===============================================================================

About this build: this rebuild has been done as part of reproduce.debian.net
where we aim to reproduce Debian binary packages distributed via ftp.debian.org,
by rebuilding using the exact same packages as the original build on the buildds,
as described in the relevant .buildinfo file from buildinfos.debian.net.

For more information please go to https://reproduce.debian.net or join
#debian-reproducible on irc.debian.org

===============================================================================

Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdg2ojDx/inputs/r-bioc-genomicfiles_1.42.0+dfsg-2_all.buildinfo
Source: r-bioc-genomicfiles
Version: 1.42.0+dfsg-2
rebuilderd-worker node: ionos17-amd64

+------------------------------------------------------------------------------+
| Downloading sources                          Mon, 11 Aug 2025 15:51:55 +0000 |
+------------------------------------------------------------------------------+

Get:1 https://deb.debian.org/debian trixie InRelease [138 kB]
Get:2 https://deb.debian.org/debian sid InRelease [216 kB]
Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB]
Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB]
Fetched 21.9 MB in 2s (12.9 MB/s)
Reading package lists...
'https://deb.debian.org/debian/pool/main/r/r-bioc-genomicfiles/r-bioc-genomicfiles_1.42.0%2bdfsg-2.dsc' r-bioc-genomicfiles_1.42.0+dfsg-2.dsc 2419 SHA256:594d8ac48a25c551307d990573f1b974309f4efe22911fc06477a3a1d430feec
'https://deb.debian.org/debian/pool/main/r/r-bioc-genomicfiles/r-bioc-genomicfiles_1.42.0%2bdfsg.orig.tar.xz' r-bioc-genomicfiles_1.42.0+dfsg.orig.tar.xz 292264 SHA256:8526bbf00556cde61f6561805b31705b2476992a97c1b68d61e4a2e58d685cd8
'https://deb.debian.org/debian/pool/main/r/r-bioc-genomicfiles/r-bioc-genomicfiles_1.42.0%2bdfsg-2.debian.tar.xz' r-bioc-genomicfiles_1.42.0+dfsg-2.debian.tar.xz 5536 SHA256:9cc9181e35c0429f1f153064116a81653e687add55cc49a80e12a599819e6d58
8526bbf00556cde61f6561805b31705b2476992a97c1b68d61e4a2e58d685cd8  r-bioc-genomicfiles_1.42.0+dfsg.orig.tar.xz
9cc9181e35c0429f1f153064116a81653e687add55cc49a80e12a599819e6d58  r-bioc-genomicfiles_1.42.0+dfsg-2.debian.tar.xz
594d8ac48a25c551307d990573f1b974309f4efe22911fc06477a3a1d430feec  r-bioc-genomicfiles_1.42.0+dfsg-2.dsc

+------------------------------------------------------------------------------+
| Calling debrebuild                           Mon, 11 Aug 2025 15:51:57 +0000 |
+------------------------------------------------------------------------------+

Rebuilding r-bioc-genomicfiles=1.42.0+dfsg-2 in /srv/rebuilderd/tmp/rebuilderdg2ojDx/inputs now.
+------------------------------------------------------------------------------+
| WARNING: calling debrebuild without --cache, hammering snapshot.d.o :(       |
+------------------------------------------------------------------------------+
+ nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdg2ojDx/out --builder=sbuild+unshare -- /srv/rebuilderd/tmp/rebuilderdg2ojDx/inputs/r-bioc-genomicfiles_1.42.0+dfsg-2_all.buildinfo
/srv/rebuilderd/tmp/rebuilderdg2ojDx/inputs/r-bioc-genomicfiles_1.42.0+dfsg-2_all.buildinfo contains a GPG signature which has NOT been validated
Using defined Build-Path: /build/reproducible-path/r-bioc-genomicfiles-1.42.0+dfsg
I: verifying dsc... successful!
dpkg-name: info: moved '09edeec42e0b25c100ad0e653b4e50c5b94a58f5' to '/srv/rebuilderd/tmp/tmpuolkfvuu/libngtcp2-crypto-gnutls8_1.9.1-1_amd64.deb'
dpkg-name: info: moved 'd6fd9dcc2d8b5fd783935808233939b4472f3127' to '/srv/rebuilderd/tmp/tmp57vc_zhi/libgnutls30t64_3.8.8-2_amd64.deb'
dpkg-name: info: moved '2009337b0d42ff7bb2e102655962e3ede6e3c53a' to '/srv/rebuilderd/tmp/tmpw9hfa9cx/libuchardet0_0.0.8-1+b2_amd64.deb'
dpkg-name: info: moved '5f6ebeaf117c9a03447edc15ef90d60d34b41d86' to '/srv/rebuilderd/tmp/tmps7qtt82d/r-cran-futile.logger_1.4.3-4_all.deb'
dpkg-name: info: moved 'bb58eb8357d1d2b3078e2bbdfe6cde558b77ac67' to '/srv/rebuilderd/tmp/tmp_rac0dba/libhogweed6t64_3.10-1+b1_amd64.deb'
dpkg-name: info: moved 'faa712f41210cb2d9992fdbaba6adae044b5fc9c' to '/srv/rebuilderd/tmp/tmp9d3ryp7x/libdebhelper-perl_13.23_all.deb'
dpkg-name: info: moved 'a85aca006ee2072a84ec2c06297885fc150dd507' to '/srv/rebuilderd/tmp/tmp2xna1o1u/libaudit1_4.0.2-2_amd64.deb'
dpkg-name: info: moved '507a8fb4afafedc5a9c177fe729aca5fde960b5a' to '/srv/rebuilderd/tmp/tmpoicy1zp_/libfontconfig1_2.15.0-2_amd64.deb'
dpkg-name: info: moved '3e83adcf197d1fe427c2f77271ecba43bd6d86aa' to '/srv/rebuilderd/tmp/tmpqbv70pny/liblapack-dev_3.12.0-4_amd64.deb'
dpkg-name: info: moved '7074e54ad2299b13627d8c7b31f5abf6f6e6bda1' to '/srv/rebuilderd/tmp/tmpx585fjn_/libdevel-overloadinfo-perl_0.007-1_all.deb'
dpkg-name: info: moved '537c47a3d6cda3b7d09e534a3304b4c7501893c3' to '/srv/rebuilderd/tmp/tmpi49n82eh/hostname_3.25_amd64.deb'
dpkg-name: info: moved 'b7fb1c0f753df055d7fb3e9a05368cb5d10c609f' to '/srv/rebuilderd/tmp/tmpvm70h8ox/libsub-exporter-perl_0.990-1_all.deb'
dpkg-name: info: moved 'b97f916891a4822986d2fa16454e975579e0364a' to '/srv/rebuilderd/tmp/tmpzjnkpp3j/gfortran-x86-64-linux-gnu_14.2.0-1_amd64.deb'
dpkg-name: info: moved '04ff30f1d5bad392400e3f2e88db02ae854ed4b4' to '/srv/rebuilderd/tmp/tmp5ohp1_h3/libunistring5_1.3-1_amd64.deb'
dpkg-name: info: moved '1a50d53b3d745e4216856048fc376343082ee7e6' to '/srv/rebuilderd/tmp/tmpnc329kd_/libfile-stripnondeterminism-perl_1.14.0-1_all.deb'
dpkg-name: info: moved 'cabec6227f870561e7e7f2e1b2f8d62a625961c2' to '/srv/rebuilderd/tmp/tmp64yx07pp/gfortran-14_14.2.0-13_amd64.deb'
dpkg-name: info: moved '5376e0ff78710baa793d3d245b6049d9706c4818' to '/srv/rebuilderd/tmp/tmpz3gmykpl/libstdc++-14-dev_14.2.0-13_amd64.deb'
dpkg-name: info: moved '671ae53fbc17c33b240584a95711642d69f00621' to '/srv/rebuilderd/tmp/tmp2xf827q3/perl-modules-5.40_5.40.0-8_all.deb'
dpkg-name: info: moved '9dd69d570c84bb156bb2a694274782d306f69f82' to '/srv/rebuilderd/tmp/tmp7iiz_3v1/libpcre2-posix3_10.44-5_amd64.deb'
dpkg-name: info: moved '0871447d503bebecdb00c78ee1de6ac86b55e04c' to '/srv/rebuilderd/tmp/tmp_b_j4pqa/libpackage-stash-xs-perl_0.30-1+b4_amd64.deb'
dpkg-name: info: moved 'd4bf45ca8c15b071cc9275057c1e1c8a283b2613' to '/srv/rebuilderd/tmp/tmpg3_sq4c6/r-bioc-xvector_0.46.0-2_amd64.deb'
dpkg-name: info: moved '95f56c3a7efa2ced4ef1a4bbe5e698bc3b8fd404' to '/srv/rebuilderd/tmp/tmp07qr419d/libsub-install-perl_0.929-1_all.deb'
dpkg-name: info: moved 'f64322e166233ad16ca51cfa3956595c98d9211f' to '/srv/rebuilderd/tmp/tmp2h_q9bd5/ncurses-base_6.5-2_all.deb'
dpkg-name: info: moved '4f55aff9f5320c9026ff754755e197b5a3760a26' to '/srv/rebuilderd/tmp/tmpewg7i0y9/r-cran-fastmap_1.2.0-1_amd64.deb'
dpkg-name: info: moved 'c2e9e5730c07a842138545f18b8cdb68fff5578b' to '/srv/rebuilderd/tmp/tmpd25_6tyq/libidn2-0_2.3.7-2+b1_amd64.deb'
dpkg-name: info: moved '24a3a22da8a3c894ae31e2e72538d2d3d28e7790' to '/srv/rebuilderd/tmp/tmp1jrjqd09/tar_1.35+dfsg-3.1_amd64.deb'
dpkg-name: info: moved '222c3386ae357d03f576326f607f582c76838fdc' to '/srv/rebuilderd/tmp/tmpgwayesbh/r-cran-askpass_1.2.1-1_amd64.deb'
dpkg-name: info: moved 'a85aba0b77ac26315755c4e3862c6703dd77b2bd' to '/srv/rebuilderd/tmp/tmpsj_15tbf/libselinux1_3.7-3+b1_amd64.deb'
dpkg-name: info: moved '7d24c6a7f0551aa403140a9e8deaf5c2df47faae' to '/srv/rebuilderd/tmp/tmpd7b6e_0g/groff-base_1.23.0-7_amd64.deb'
dpkg-name: info: moved 'c985dc67d0596293d22a6c050b33fcb78d30326f' to '/srv/rebuilderd/tmp/tmpnhbl3wht/po-debconf_1.0.21+nmu1_all.deb'
dpkg-name: info: moved 'cda4ffb8743b8d5e1c9fb0e3e76dbbd228de08fa' to '/srv/rebuilderd/tmp/tmpk3k6euyr/r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb'
dpkg-name: info: moved 'ec4f49b0a6351da59f3bf97b149123c8a5bc53e6' to '/srv/rebuilderd/tmp/tmp7q6z9e3j/libcc1-0_14.2.0-13_amd64.deb'
dpkg-name: info: moved '5b142b3b2e2650970f5b198fc2898fa843110178' to '/srv/rebuilderd/tmp/tmpryyc8isy/libmagic1t64_5.45-3+b1_amd64.deb'
dpkg-name: info: moved '574f2968f90c0e4622fc6a081ab5f35316f3de8b' to '/srv/rebuilderd/tmp/tmpt1a6z6i4/r-cran-abind_1.4-8-1_all.deb'
dpkg-name: info: moved '222252175a81a3b901b5cb265fa478a2148732c3' to '/srv/rebuilderd/tmp/tmpi0ne6pj_/libsasl2-2_2.1.28+dfsg1-8_amd64.deb'
dpkg-name: info: moved '1d47b6af368facc2d560a7eaa2f827aea5671aba' to '/srv/rebuilderd/tmp/tmpsh_yootb/libisl23_0.27-1_amd64.deb'
dpkg-name: info: moved 'd7440d194dd1142be8833d6167253ed019abd015' to '/srv/rebuilderd/tmp/tmpv62fcphy/libpixman-1-0_0.44.0-3_amd64.deb'
dpkg-name: info: moved 'f720a9293217b5c76823627068c14f9eba6fd36f' to '/srv/rebuilderd/tmp/tmpi0u_q541/r-cran-matrixstats_1.4.1-1_amd64.deb'
dpkg-name: info: moved 'e0df83113384442c8973fe35be13326370c99fd8' to '/srv/rebuilderd/tmp/tmpxp081kdl/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_amd64.deb'
dpkg-name: info: moved '721d9692ffd65ded56bf4de880f199ec188aa04f' to '/srv/rebuilderd/tmp/tmpt7h78eh6/libpsl5t64_0.21.2-1.1+b1_amd64.deb'
dpkg-name: info: moved 'dc9a36e09ca5337af243c6a57f90cb11503c8209' to '/srv/rebuilderd/tmp/tmpo_s51pst/r-bioc-rtracklayer_1.66.0-2_amd64.deb'
dpkg-name: info: moved '292d4fc25f7a54c1676183f9e328fff7f95b2ec3' to '/srv/rebuilderd/tmp/tmpoi_lyamk/libattr1_2.5.2-2_amd64.deb'
dpkg-name: info: moved 'c49b1b7e7de1ec0305288ee333081c59503bacae' to '/srv/rebuilderd/tmp/tmp7koyc5v7/libbinutils_2.43.50.20250108-1_amd64.deb'
dpkg-name: info: moved 'c523bcc6cf45976c70b218d9bdb61e19f0a61345' to '/srv/rebuilderd/tmp/tmp9k3n3cgg/libdeflate-dev_1.22-1_amd64.deb'
dpkg-name: info: moved '756f3e0a27f6fa768809b9cdeaa05eafe038f1ba' to '/srv/rebuilderd/tmp/tmprngn9pxa/libcom-err2_1.47.2-1_amd64.deb'
dpkg-name: info: moved '1b4b8dff6dfe1e5af617ae178f93c92cb7a9702d' to '/srv/rebuilderd/tmp/tmp_5h24z04/libgcc-14-dev_14.2.0-13_amd64.deb'
dpkg-name: info: moved '03bf9895286d2829ea8b2ac9ae949e9415f2e2c7' to '/srv/rebuilderd/tmp/tmpy1ix61nf/r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb'
dpkg-name: info: moved 'ce42ab83e43305149e80105b788d0eb54c996bcd' to '/srv/rebuilderd/tmp/tmp3gdxw20p/r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb'
dpkg-name: info: moved '4b1841588583cf3a8981a732224a80c673e2e5ae' to '/srv/rebuilderd/tmp/tmpqtm1wncf/libpng-dev_1.6.45-1_amd64.deb'
dpkg-name: info: moved '1df01dff6cf1fb531ae1f6845af2353adf463f98' to '/srv/rebuilderd/tmp/tmpv7jyor10/libswitch-perl_2.17-3_all.deb'
dpkg-name: info: moved 'e3bc01cf430edff34b216aa335a1bd7054e031da' to '/srv/rebuilderd/tmp/tmp3x5s8bvy/libpaper2_2.2.5-0.3_amd64.deb'
dpkg-name: info: moved '3ffde3f07f58b30dc5e8d5e3461362cd55435948' to '/srv/rebuilderd/tmp/tmp77duzb0p/libsub-exporter-progressive-perl_0.001013-3_all.deb'
dpkg-name: info: moved 'd9c1d92c3f277dd2bc8686b4ce05236dd0487aff' to '/srv/rebuilderd/tmp/tmpe925m_06/ucf_3.0046_all.deb'
dpkg-name: info: moved '383b5ec82ad65abfdf78b961081b38a72ba8e19b' to '/srv/rebuilderd/tmp/tmpoqjymoim/r-bioc-bsgenome_1.74.0-2_all.deb'
dpkg-name: info: moved 'cefbbeb41869ffacff621e1a31bf66617df50832' to '/srv/rebuilderd/tmp/tmp244ji2_h/libelf1t64_0.192-4_amd64.deb'
dpkg-name: info: moved '7df562b6ad9af0990c5fa8b462f46e3a56a2edff' to '/srv/rebuilderd/tmp/tmpb729xomh/r-cran-cachem_1.1.0-1_amd64.deb'
dpkg-name: info: moved 'cf6f984a2e4d5987437db13ecd238955cf66efa9' to '/srv/rebuilderd/tmp/tmpatl4nq9e/libdevel-stacktrace-perl_2.0500-1_all.deb'
dpkg-name: info: moved '27cb574f5e0f611cc7cdec8a10c5165c1f85b51b' to '/srv/rebuilderd/tmp/tmpgy6syvl2/file_5.45-3+b1_amd64.deb'
dpkg-name: info: moved 'd8fc9fc60d8dbb16d2642ea2770f66730323ed45' to '/srv/rebuilderd/tmp/tmpz1i6z25u/patch_2.7.6-7_amd64.deb'
dpkg-name: info: moved '804bc886fbf8e1629ad879a3aec9688828d249b7' to '/srv/rebuilderd/tmp/tmpgwatuv6o/r-cran-memoise_2.0.1-1_all.deb'
dpkg-name: info: moved 'e06bb16e07a1f267fd8e8c62c3bf6ea6226c636f' to '/srv/rebuilderd/tmp/tmpjsjfm8xz/libpackage-deprecationmanager-perl_0.18-1_all.deb'
dpkg-name: info: moved 'c20b00c876028cbb45c4dd0dc5bf050eb1972192' to '/srv/rebuilderd/tmp/tmpp2l9z0n0/r-cran-bit64_4.0.5-1_amd64.deb'
dpkg-name: info: moved 'f363614b3aaa2bcaeb296562f805aa7f0f983799' to '/srv/rebuilderd/tmp/tmpkrc97ik0/libtool_2.5.4-2_all.deb'
dpkg-name: info: moved 'e2312c42b89da330823ebe5e1dc60d6cfd88792a' to '/srv/rebuilderd/tmp/tmpithtcx4a/libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb'
dpkg-name: info: moved 'c443c0c0f2742f280607b603b6d62a2ae6c2743d' to '/srv/rebuilderd/tmp/tmpf87kxnen/g++_14.2.0-1_amd64.deb'
dpkg-name: info: moved 'ca16adc7e56b02c079f8562f0eeb5b9c69415180' to '/srv/rebuilderd/tmp/tmp3waw07dg/libsmartcols1_2.40.3-1_amd64.deb'
dpkg-name: info: moved '2924a28ffd837f9ec7c96159cefb697351594367' to '/srv/rebuilderd/tmp/tmpa6s85fx6/libpam-modules_1.5.3-7+b1_amd64.deb'
dpkg-name: info: moved '5df086deac5b9360edd382fbeda98aedd8207f49' to '/srv/rebuilderd/tmp/tmpgvuyuwk1/libtry-tiny-perl_0.32-1_all.deb'
dpkg-name: info: moved '16194ddcab2ae57662c66462ae45e00c09196027' to '/srv/rebuilderd/tmp/tmpkzbdfwqs/gcc-14_14.2.0-13_amd64.deb'
dpkg-name: info: moved 'f070f5fc40ef5d962016667f6a2537a2628e3788' to '/srv/rebuilderd/tmp/tmprllkc7_7/libgcc-s1_14.2.0-13_amd64.deb'
dpkg-name: info: moved 'aeac40ec09a1b38b1c3e02eef1cba3e3cac608a9' to '/srv/rebuilderd/tmp/tmpqct364wm/zip_3.0-14_amd64.deb'
dpkg-name: info: moved 'b4661297127730046296994de75f95dc2ede3778' to '/srv/rebuilderd/tmp/tmppv75zx8l/r-cran-rjson_0.2.23-1_amd64.deb'
dpkg-name: info: moved 'f7b230ddaa3127073239649f4af2d6d8897d717a' to '/srv/rebuilderd/tmp/tmp2mxn4jw9/cpp_14.2.0-1_amd64.deb'
dpkg-name: info: moved '799857730e6aa074adc75e897345fa93d0f04d06' to '/srv/rebuilderd/tmp/tmpi_x1a70n/make_4.4.1-1_amd64.deb'
dpkg-name: info: moved '0547e3caf3f62a87b24283918a3099fcd39804ad' to '/srv/rebuilderd/tmp/tmp0op82z5u/libdist-checkconflicts-perl_0.11-2_all.deb'
dpkg-name: info: moved '78687aee7dbf56e1f0fcc7c9b6bfb5b3850f31bc' to '/srv/rebuilderd/tmp/tmpy4r_hpz3/libboost-dev_1.83.0.2+b2_amd64.deb'
dpkg-name: info: moved '1904b4dfe53313030f9d6c33d50ea05507eb8ed9' to '/srv/rebuilderd/tmp/tmptk0bwbgo/libicu-dev_72.1-6_amd64.deb'
dpkg-name: info: moved '145f1be0efb24a586282758ea5ea5e3496e2b8dc' to '/srv/rebuilderd/tmp/tmpmsltvrqa/cpp-x86-64-linux-gnu_14.2.0-1_amd64.deb'
dpkg-name: info: moved 'ca72c37ff19b901b427ab9489e6baa6894a95577' to '/srv/rebuilderd/tmp/tmpse_31zel/libbz2-dev_1.0.8-6_amd64.deb'
dpkg-name: info: moved '8eeacf63ae65a114f09ba41c62116385b3931695' to '/srv/rebuilderd/tmp/tmpyff214dj/libzstd1_1.5.6+dfsg-2_amd64.deb'
dpkg-name: info: moved 'c185c33fa46657bd5d87e1bf30eed143ad53c851' to '/srv/rebuilderd/tmp/tmpc5lnyv33/procps_4.0.4-6_amd64.deb'
dpkg-name: info: moved 'c40ab1f32bfe261975f1d7d38348667f9271eef2' to '/srv/rebuilderd/tmp/tmp80rrymvr/dpkg-dev_1.22.13_all.deb'
dpkg-name: info: moved 'e28fc2bdae48b14fd958e8ba6010e2bffb7601e0' to '/srv/rebuilderd/tmp/tmpiiw716xz/dpkg_1.22.13_amd64.deb'
dpkg-name: info: moved 'e9ead5081c3b70e5b5831f6324910c883dd7ef40' to '/srv/rebuilderd/tmp/tmpyjmbcnba/g++-x86-64-linux-gnu_14.2.0-1_amd64.deb'
dpkg-name: info: moved 'a344baee1d7e718c3836c41eed85160e25ae1c31' to '/srv/rebuilderd/tmp/tmpi8clhp09/libc6-dev_2.40-5_amd64.deb'
dpkg-name: info: moved '2ff4ba4cf8b7e4a2093c5aa41cf99f2363ec953e' to '/srv/rebuilderd/tmp/tmpdz4vkg_d/libblkid1_2.40.3-1_amd64.deb'
dpkg-name: info: moved '475722decc50725f650e326d52dfdd0c66853a6b' to '/srv/rebuilderd/tmp/tmpzd2o64q2/fonts-dejavu-core_2.37-8_all.deb'
dpkg-name: info: moved '346f4c3e3d71e730ec6cfc39f6a5e84839b80ecc' to '/srv/rebuilderd/tmp/tmpc3wl592p/r-bioc-biocparallel_1.40.0-2_amd64.deb'
dpkg-name: info: moved '784fb94aa5dde084a04630908e2d1b60f5784797' to '/srv/rebuilderd/tmp/tmp8epyqhoq/r-cran-formatr_1.14-2_all.deb'
dpkg-name: info: moved 'a68e191136879ef8e5f9e6808849010be2bd0b8e' to '/srv/rebuilderd/tmp/tmp9ywbpd9q/libx11-6_1.8.10-2_amd64.deb'
dpkg-name: info: moved '650fbb70f3c3989fc9a60ba6ae7a345b33cbad24' to '/srv/rebuilderd/tmp/tmp7ipfzk6k/libseccomp2_2.5.5-2_amd64.deb'
dpkg-name: info: moved '1ca56600ef5bd4f7317c1f1c361811e7262deb24' to '/srv/rebuilderd/tmp/tmpcui4fns7/bsdextrautils_2.40.3-1_amd64.deb'
dpkg-name: info: moved '61921be671ffab5ab351306b9cde74a0987cd62a' to '/srv/rebuilderd/tmp/tmp8hl74gnn/findutils_4.10.0-3_amd64.deb'
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dpkg-name: info: moved 'd7cc66c713ee3a13713f3dffaec4e2b9fa43ffe2' to '/srv/rebuilderd/tmp/tmpw07m3bde/libbz2-1.0_1.0.8-6_amd64.deb'
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dpkg-name: info: moved '66e575e56473dcf346903994c6373baed161fb9d' to '/srv/rebuilderd/tmp/tmpk1ajn2wv/tzdata_2024b-5_all.deb'
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dpkg-name: info: moved '6a55ebb038d9fec5211a1052db19936f86bee460' to '/srv/rebuilderd/tmp/tmp2zui_z66/r-bioc-matrixgenerics_1.18.0-2_all.deb'
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dpkg-name: info: moved '61d5b1d2f48900b309fae792be13336f96564c15' to '/srv/rebuilderd/tmp/tmpxahm7u3o/r-bioc-biobase_2.66.0-2_amd64.deb'
dpkg-name: info: moved 'a9f638268b1e4549ed4f5dba543f756be4c923e1' to '/srv/rebuilderd/tmp/tmp7pv5keg3/base-passwd_3.6.6_amd64.deb'
dpkg-name: info: moved '4f7165a424d0691a8b49fee66378ecb415ab8d4a' to '/srv/rebuilderd/tmp/tmp_l51t8qc/fontconfig-config_2.15.0-2_amd64.deb'
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dpkg-name: info: moved 'a077d5d9b44f061f70b63b549f973c9055f674bb' to '/srv/rebuilderd/tmp/tmpz7mk3ztn/libpipeline1_1.5.8-1_amd64.deb'
dpkg-name: info: moved 'f59dc1c3130368ccb3e8cb7689cfdf95bff850db' to '/srv/rebuilderd/tmp/tmptdocd4iw/gettext-base_0.22.5-4_amd64.deb'
dpkg-name: info: moved 'afce084924a8623c3f31caa41d32461b8a07769d' to '/srv/rebuilderd/tmp/tmpvfkopgvo/dh-strip-nondeterminism_1.14.0-1_all.deb'
dpkg-name: info: moved '6b797f7ade227ecc96dcc9e1ecadd1be625dfa3a' to '/srv/rebuilderd/tmp/tmp4100fkkp/libdeflate0_1.22-1_amd64.deb'
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dpkg-name: info: moved '5661a7e86ea1c7dd8f5c226d062af28b365e4005' to '/srv/rebuilderd/tmp/tmpkdg9v0bb/libsystemd0_257.2-1_amd64.deb'
dpkg-name: info: moved 'fc9d1247247dd8d4e0e231b26ff01fe7509a55f1' to '/srv/rebuilderd/tmp/tmpgcudrgkq/libxcb1_1.17.0-2+b1_amd64.deb'
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dpkg-name: info: moved '622bda07f311967a7af1c0c52220e5ab1198346e' to '/srv/rebuilderd/tmp/tmpte3uppke/libexpat1_2.6.4-1_amd64.deb'
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dpkg-name: info: moved '96b84d1224b5f265ec4ebb919a3e061b0c2c370a' to '/srv/rebuilderd/tmp/tmpxm8rkhbq/libnettle8t64_3.10-1+b1_amd64.deb'
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dpkg-name: info: moved 'ffcab1357312f70b47d65c036fd87acb40b758cb' to '/srv/rebuilderd/tmp/tmpggmhdt91/libncurses6_6.5-2+b1_amd64.deb'
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dpkg-name: info: moved 'a8e9e646433bccd399aeae2b635a76b9dcd96279' to '/srv/rebuilderd/tmp/tmpj5528jp5/libclass-load-xs-perl_0.10-2+b4_amd64.deb'
dpkg-name: info: moved '8212065c80c91a05839e26821dc65088f4ffe67d' to '/srv/rebuilderd/tmp/tmpo85r_9cn/libgdbm6t64_1.24-2_amd64.deb'
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dpkg-name: info: moved '4dc5b76fe74f8653f053038f893da15d890326e2' to '/srv/rebuilderd/tmp/tmpxoh71466/m4_1.4.19-5_amd64.deb'
dpkg-name: info: moved '4bdf04dea0fdc741d5dd942a2d02f26cef5378a6' to '/srv/rebuilderd/tmp/tmpos1qat89/libtimedate-perl_2.3300-2_all.deb'
dpkg-name: info: moved '1a9c47795cced7a9d127410e56164bf9ff76e83e' to '/srv/rebuilderd/tmp/tmp1o40u567/r-bioc-genomicalignments_1.42.0-2_amd64.deb'
dpkg-name: info: moved '92c99687745c447dc44440a4493519bc052d0e9f' to '/srv/rebuilderd/tmp/tmpzfnzj4t3/libsm6_1.2.4-1_amd64.deb'
dpkg-name: info: moved 'e26a84b05448e96717593c0257a9055f82a6ec42' to '/srv/rebuilderd/tmp/tmpussmuctd/libthai0_0.1.29-2+b1_amd64.deb'
dpkg-name: info: moved '3da6754926afaa1f27fef7fb78150f4ee36da57a' to '/srv/rebuilderd/tmp/tmptbdjth0v/libb-hooks-op-check-perl_0.22-3+b2_amd64.deb'
dpkg-name: info: moved '4bddb4aed86342c5147f99fd72ce1eb167b8dd68' to '/srv/rebuilderd/tmp/tmpgmwkqiu1/libxcb-shm0_1.17.0-2+b1_amd64.deb'
dpkg-name: info: moved '9e9458b6765b03ee0dc24891f16c552b85edffce' to '/srv/rebuilderd/tmp/tmpsao5cdau/debianutils_5.21_amd64.deb'

Downloading dependency 130 of 380: r-cran-yaml:amd64=2.3.10-1
Downloading dependency 131 of 380: libssl3t64:amd64=3.4.0-2
Downloading dependency 132 of 380: pkgconf:amd64=1.8.1-4
Downloading dependency 133 of 380: r-bioc-biocgenerics:amd64=0.52.0-2
Downloading dependency 134 of 380: bash:amd64=5.2.37-1
Downloading dependency 135 of 380: libdevel-callchecker-perl:amd64=0.009-1+b1
Downloading dependency 136 of 380: libncursesw6:amd64=6.5-2+b1
Downloading dependency 137 of 380: librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b5
Downloading dependency 138 of 380: libudev1:amd64=257.2-1
Downloading dependency 139 of 380: r-cran-httr:amd64=1.4.7+dfsg-1
Downloading dependency 140 of 380: autotools-dev:amd64=20220109.1
Downloading dependency 141 of 380: g++-14-x86-64-linux-gnu:amd64=14.2.0-13
Downloading dependency 142 of 380: libbz2-1.0:amd64=1.0.8-6
Downloading dependency 143 of 380: libcurl3t64-gnutls:amd64=8.11.1-1
Downloading dependency 144 of 380: libgprofng0:amd64=2.43.50.20250108-1
Downloading dependency 145 of 380: r-cran-bit:amd64=4.0.5-1
Downloading dependency 146 of 380: libnghttp2-14:amd64=1.64.0-1
Downloading dependency 147 of 380: xz-utils:amd64=5.6.3-1+b1
Downloading dependency 148 of 380: gcc-14-x86-64-linux-gnu:amd64=14.2.0-13
Downloading dependency 149 of 380: libsub-identify-perl:amd64=0.14-3+b3
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Downloading dependency 151 of 380: libdevel-globaldestruction-perl:amd64=0.14-4
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dpkg-name: info: moved '5635bb60438f44af86da35a1c358288138bed3e6' to '/srv/rebuilderd/tmp/tmpkgw_54dt/r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb'
dpkg-name: info: moved '84f251dec178be15b895bfdd9c563ed60160ba3f' to '/srv/rebuilderd/tmp/tmp8cmrqsrq/r-cran-lambda.r_1.2.4-2_all.deb'
dpkg-name: info: moved '7be5c58d2594133d0fa1dd5c9f7b8a7d2cd087c8' to '/srv/rebuilderd/tmp/tmpga2rdnpn/libwebp7_1.5.0-0.1_amd64.deb'
dpkg-name: info: moved 'a29275a7ec079ad04a750c01f55653c353c36ee1' to '/srv/rebuilderd/tmp/tmp1ioeixou/r-bioc-annotationdbi_1.68.0-2_all.deb'
dpkg-name: info: moved '23aea262d2c56a31d6557ffe3c1a23c77772d304' to '/srv/rebuilderd/tmp/tmprrvd1noy/gcc_14.2.0-1_amd64.deb'
dpkg-name: info: moved 'f04540923df81f90ec5ebd7c04d6890d30c84404' to '/srv/rebuilderd/tmp/tmp9ujooz43/libgomp1_14.2.0-13_amd64.deb'
dpkg-name: info: moved '741955844803ba254c5534c6395bf9a3bd06fa23' to '/srv/rebuilderd/tmp/tmpw5ew1nr6/libc6_2.40-5_amd64.deb'
dpkg-name: info: moved 'ea51e3267b7aa137853e971768b8d81ea2dab512' to '/srv/rebuilderd/tmp/tmpkv73_eoz/libasan8_14.2.0-13_amd64.deb'
dpkg-name: info: moved '1e84b1aceb6b0de820b73138c064563c67621b6a' to '/srv/rebuilderd/tmp/tmp8997nbw_/liblsan0_14.2.0-13_amd64.deb'
dpkg-name: info: moved '98fb1ed69df1c946aa3e9b8d9778617da2d10557' to '/srv/rebuilderd/tmp/tmp2wmcv3eo/r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb'
dpkg-name: info: moved '429412435ee54708b6bb00fba8f4b49522ac446e' to '/srv/rebuilderd/tmp/tmpphuty1bg/ncurses-bin_6.5-2+b1_amd64.deb'
dpkg-name: info: moved '348722998f48db57731b45292b08dc5c3131857d' to '/srv/rebuilderd/tmp/tmpkvlky17s/libxmuu1_1.1.3-3+b4_amd64.deb'
dpkg-name: info: moved 'ed449d06d1e84c56deb2487977971e46ba5cf699' to '/srv/rebuilderd/tmp/tmp7dgtwr4d/intltool-debian_0.35.0+20060710.6_all.deb'
dpkg-name: info: moved '293a68d65d14337defeb3bf3a30ec4afdd85e428' to '/srv/rebuilderd/tmp/tmpb_37wopf/bsdutils_2.40.3-1_amd64.deb'
dpkg-name: info: moved '0d12b31ac736c30a9f5c191bb4ce2fe88e38f3d3' to '/srv/rebuilderd/tmp/tmpy_dyx6zl/libgfortran-14-dev_14.2.0-13_amd64.deb'
dpkg-name: info: moved 'b93c999cdbe681f0591c1e705b53fd737bd46827' to '/srv/rebuilderd/tmp/tmpgl99_q3x/perl-base_5.40.0-8_amd64.deb'
dpkg-name: info: moved '578bb313af73a79a8be28dd47d418e7f6880518f' to '/srv/rebuilderd/tmp/tmps_94xg7h/r-cran-vctrs_0.6.5-1_amd64.deb'
dpkg-name: info: moved 'c7e5027526e90d395bb9cf0ba7fe7bd406fcc444' to '/srv/rebuilderd/tmp/tmpg52vvh61/r-cran-matrix_1.7-1-1_amd64.deb'
dpkg-name: info: moved '0c6a5d92feed9693ef01b53a8226d66be59ea515' to '/srv/rebuilderd/tmp/tmpsvlr6v2a/libdebconfclient0_0.277_amd64.deb'
dpkg-name: info: moved 'a311c268e27d0cd63980f918dc25850e74ea6abe' to '/srv/rebuilderd/tmp/tmpnpnplj80/base-files_13.6_amd64.deb'
dpkg-name: info: moved '022eab3bec89a7c7f5c6215ff5f57a32cf78a2ec' to '/srv/rebuilderd/tmp/tmprgae0sqn/r-base-dev_4.4.2-1_all.deb'
dpkg-name: info: moved '6a6c6906e976cd58d8777c9465ff0af5054950d5' to '/srv/rebuilderd/tmp/tmprpva82pw/libmpfr6_4.2.1-1+b2_amd64.deb'
dpkg-name: info: moved '71dfd03d453b89ff30bbe49bdb57dfac03a214d9' to '/srv/rebuilderd/tmp/tmp4n0gl235/libproc2-0_4.0.4-6_amd64.deb'
dpkg-name: info: moved '6307ae0dc648946d5c877bcf2835edb57589d2d9' to '/srv/rebuilderd/tmp/tmpsek3kxnr/r-cran-cpp11_0.5.0-1_all.deb'
dpkg-name: info: moved '35d0919bfaccb06d3ff36e443700f3c41760fb33' to '/srv/rebuilderd/tmp/tmpc2gak170/libencode-locale-perl_1.05-3_all.deb'
dpkg-name: info: moved '6610e9ed8ca8a6e529b169cd54e73b61fd4a0dbf' to '/srv/rebuilderd/tmp/tmp1ma64vth/libcap2_2.66-5+b1_amd64.deb'
dpkg-name: info: moved '51c8c4bbbb1b29dd6a53bf07a92a365bdad34b8a' to '/srv/rebuilderd/tmp/tmpdoh688ry/gfortran_14.2.0-1_amd64.deb'
dpkg-name: info: moved '1a2a16c0e01433c2b1addd212881350535397c02' to '/srv/rebuilderd/tmp/tmpa4s3o98c/libpcre2-32-0_10.44-5_amd64.deb'
dpkg-name: info: moved '985911d69dfbdedddc940cfb64c38e8b14621d30' to '/srv/rebuilderd/tmp/tmpzpsfpons/r-cran-rsqlite_2.3.7-2_amd64.deb'
dpkg-name: info: moved 'afecf82fa482879861398728f8a257b49809c46d' to '/srv/rebuilderd/tmp/tmpt2swawxg/libctf0_2.43.50.20250108-1_amd64.deb'
dpkg-name: info: moved '3a1a295ee970dff9423e8f65e908c8ade246e607' to '/srv/rebuilderd/tmp/tmpcn2meryt/libjpeg62-turbo-dev_2.1.5-3+b1_amd64.deb'
dpkg-name: info: moved 'b094813d4ea39997a3a798b356961ab080b31428' to '/srv/rebuilderd/tmp/tmpt3odb_sw/libreadline8t64_8.2-6_amd64.deb'
dpkg-name: info: moved '40010f4454102426678b631eb10c67f49bae7b2b' to '/srv/rebuilderd/tmp/tmpct33d9fn/liblapack3_3.12.0-4_amd64.deb'
dpkg-name: info: moved 'ac8c7d8bf9611123b258c1367761d7a7c5b947ee' to '/srv/rebuilderd/tmp/tmpzqqvfyio/r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb'
dpkg-name: info: moved '0b1fdf1baf48d943b98b670aa57dc748fd000e5b' to '/srv/rebuilderd/tmp/tmp3rl7zap2/liburi-perl_5.30-1_all.deb'
dpkg-name: info: moved '26246a81d648968fa4db0d633f57730737295ef9' to '/srv/rebuilderd/tmp/tmpsakxlvdr/libc-bin_2.40-5_amd64.deb'
dpkg-name: info: moved '16f1880620b1a8a4ba013e94e93bcf25a3f25d76' to '/srv/rebuilderd/tmp/tmpy4gcokqv/libgssapi-krb5-2_1.21.3-3_amd64.deb'
dpkg-name: info: moved '1bd860f1b9bfbf1442147b4d032e272143fd49a7' to '/srv/rebuilderd/tmp/tmpc2w27_ez/libclass-load-perl_0.25-2_all.deb'
dpkg-name: info: moved '0d92888372ed117bf54bec481863c5f06ab965f4' to '/srv/rebuilderd/tmp/tmpm8naz_e_/libc-dev-bin_2.40-5_amd64.deb'
dpkg-name: info: moved '98a2af3a05ef53b1d69d0c5ea7a4b1e4190e35e9' to '/srv/rebuilderd/tmp/tmpqu0fb7jt/libxrender1_0.9.10-1.1+b3_amd64.deb'
dpkg-name: info: moved '1eb59785bf51f28c6b5dd0ed054d1028d51b2c6d' to '/srv/rebuilderd/tmp/tmp_ymo_q2t/r-base-core_4.4.2-1_amd64.deb'
dpkg-name: info: moved '8f9b21cef417f06049adb3eef8310a80a5bf0858' to '/srv/rebuilderd/tmp/tmpj92bofpk/libblas-dev_3.12.0-4_amd64.deb'
dpkg-name: info: moved 'a3a4525073551b03a55b148f5a118ccbb1991bf3' to '/srv/rebuilderd/tmp/tmprob604rr/sensible-utils_0.0.24_all.deb'
dpkg-name: info: moved '434fd5e78071e44d13890aff8081080b404d2cd2' to '/srv/rebuilderd/tmp/tmpau3rfya6/mawk_1.3.4.20240905-1_amd64.deb'
dpkg-name: info: moved '512350fc58c62d2794eb1ba3ecea0940a9aba051' to '/srv/rebuilderd/tmp/tmpms5x1ufe/libhwasan0_14.2.0-13_amd64.deb'
dpkg-name: info: moved 'a3639359394712d35d93de5684dd65cf828ca69f' to '/srv/rebuilderd/tmp/tmpw09on7_j/g++-14_14.2.0-13_amd64.deb'
dpkg-name: info: moved '63366c7a4935ec3db46d67fbe6d4c073b0c9fafb' to '/srv/rebuilderd/tmp/tmp8c0gs5jk/libgmp10_6.3.0+dfsg-3_amd64.deb'
dpkg-name: info: moved 'acd1561110601c152c0609012c29b2441735b36b' to '/srv/rebuilderd/tmp/tmpz3qrfhq7/libpng16-16t64_1.6.45-1_amd64.deb'
dpkg-name: info: moved '8b65ea4d11e396dfe3f25cb59228cc83b8929d05' to '/srv/rebuilderd/tmp/tmptsebrghd/r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb'
dpkg-name: info: moved '665171e77ac38bacd226db8cb401accb4bf1c623' to '/srv/rebuilderd/tmp/tmps8ezv4v4/libquadmath0_14.2.0-13_amd64.deb'
dpkg-name: info: moved 'ecbd1400fd55b23bfd93f5850f2d0b019261ccab' to '/srv/rebuilderd/tmp/tmp5z65i5om/libb-hooks-endofscope-perl_0.28-1_all.deb'
dpkg-name: info: moved '959493934085e58f64c6efd0036e8f997e1dc927' to '/srv/rebuilderd/tmp/tmpnk1wql3a/libpam-modules-bin_1.5.3-7+b1_amd64.deb'
dpkg-name: info: moved 'd0cb5516047722eea00700869d78cf0a6e36890e' to '/srv/rebuilderd/tmp/tmpkbdtfzdn/libhttp-message-perl_7.00-2_all.deb'
dpkg-name: info: moved '3c39a159d523a2c34ea1834d7dad04c3fcfb4a9b' to '/srv/rebuilderd/tmp/tmpeb4wquu4/dh-r_20241218_all.deb'
dpkg-name: info: moved '8c5580c7ae6b55bc701e1fe53a05e8a4a48f86e4' to '/srv/rebuilderd/tmp/tmpv0tg5i_i/sed_4.9-2_amd64.deb'
dpkg-buildpackage: info: source package debootsnap-dummy
dpkg-buildpackage: info: source version 1.0
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator <rebuilderd@ionos17-amd64.debian.net>
dpkg-buildpackage: info: host architecture amd64
 dpkg-source --before-build .
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/debootsnap-dummy/
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'.
 dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo
 dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)

The package has been created.
Attention, the package has been created in the /srv/rebuilderd/tmp/tmpbh3dihw6/cache directory,
not in ".." as indicated by the message above!
I: automatically chosen mode: unshare
I: chroot architecture amd64 is equal to the host's architecture
I: using /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4 as tempdir
I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4
Ign:1 copy:/srv/rebuilderd/tmp/tmpbh3dihw6/cache ./ InRelease
Get:2 copy:/srv/rebuilderd/tmp/tmpbh3dihw6/cache ./ Release [462 B]
Ign:3 copy:/srv/rebuilderd/tmp/tmpbh3dihw6/cache ./ Release.gpg
Get:4 copy:/srv/rebuilderd/tmp/tmpbh3dihw6/cache ./ Packages [477 kB]
Fetched 477 kB in 0s (45.1 MB/s)
Reading package lists...
usr-is-merged found but not real -- not running merged-usr setup hook
I: skipping apt-get update because it was already run
I: downloading packages with apt...
I: extracting archives...
I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4
Ign:1 copy:/srv/rebuilderd/tmp/tmpbh3dihw6/cache ./ InRelease
Get:2 copy:/srv/rebuilderd/tmp/tmpbh3dihw6/cache ./ Release [462 B]
Ign:3 copy:/srv/rebuilderd/tmp/tmpbh3dihw6/cache ./ Release.gpg
Fetched 462 B in 0s (44.0 kB/s)
Reading package lists...
usr-is-merged found but not real -- not running merged-usr extract hook
I: installing essential packages...
I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4
usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook
I: installing remaining packages inside the chroot...
I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpbh3dihw6/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4
Reading package lists...
Building dependency tree...
Reading state information...
libngtcp2-crypto-gnutls8 is already the newest version (1.9.1-1).
libngtcp2-crypto-gnutls8 set to manually installed.
libgnutls30t64 is already the newest version (3.8.8-2).
libgnutls30t64 set to manually installed.
libuchardet0 is already the newest version (0.0.8-1+b2).
libuchardet0 set to manually installed.
r-cran-futile.logger is already the newest version (1.4.3-4).
r-cran-futile.logger set to manually installed.
libhogweed6t64 is already the newest version (3.10-1+b1).
libhogweed6t64 set to manually installed.
libdebhelper-perl is already the newest version (13.23).
libdebhelper-perl set to manually installed.
libaudit1 is already the newest version (1:4.0.2-2).
libfontconfig1 is already the newest version (2.15.0-2).
libfontconfig1 set to manually installed.
liblapack-dev is already the newest version (3.12.0-4).
liblapack-dev set to manually installed.
libdevel-overloadinfo-perl is already the newest version (0.007-1).
libdevel-overloadinfo-perl set to manually installed.
hostname is already the newest version (3.25).
libsub-exporter-perl is already the newest version (0.990-1).
libsub-exporter-perl set to manually installed.
gfortran-x86-64-linux-gnu is already the newest version (4:14.2.0-1).
gfortran-x86-64-linux-gnu set to manually installed.
libunistring5 is already the newest version (1.3-1).
libunistring5 set to manually installed.
libfile-stripnondeterminism-perl is already the newest version (1.14.0-1).
libfile-stripnondeterminism-perl set to manually installed.
gfortran-14 is already the newest version (14.2.0-13).
gfortran-14 set to manually installed.
libstdc++-14-dev is already the newest version (14.2.0-13).
libstdc++-14-dev set to manually installed.
perl-modules-5.40 is already the newest version (5.40.0-8).
perl-modules-5.40 set to manually installed.
libpcre2-posix3 is already the newest version (10.44-5).
libpcre2-posix3 set to manually installed.
libpackage-stash-xs-perl is already the newest version (0.30-1+b4).
libpackage-stash-xs-perl set to manually installed.
r-bioc-xvector is already the newest version (0.46.0-2).
r-bioc-xvector set to manually installed.
libsub-install-perl is already the newest version (0.929-1).
libsub-install-perl set to manually installed.
ncurses-base is already the newest version (6.5-2).
r-cran-fastmap is already the newest version (1.2.0-1).
r-cran-fastmap set to manually installed.
libidn2-0 is already the newest version (2.3.7-2+b1).
libidn2-0 set to manually installed.
tar is already the newest version (1.35+dfsg-3.1).
r-cran-askpass is already the newest version (1.2.1-1).
r-cran-askpass set to manually installed.
libselinux1 is already the newest version (3.7-3+b1).
groff-base is already the newest version (1.23.0-7).
groff-base set to manually installed.
po-debconf is already the newest version (1.0.21+nmu1).
po-debconf set to manually installed.
r-bioc-s4arrays is already the newest version (1.6.0+dfsg-2).
r-bioc-s4arrays set to manually installed.
libcc1-0 is already the newest version (14.2.0-13).
libcc1-0 set to manually installed.
libmagic1t64 is already the newest version (1:5.45-3+b1).
libmagic1t64 set to manually installed.
r-cran-abind is already the newest version (1.4-8-1).
r-cran-abind set to manually installed.
libsasl2-2 is already the newest version (2.1.28+dfsg1-8).
libsasl2-2 set to manually installed.
libisl23 is already the newest version (0.27-1).
libisl23 set to manually installed.
libpixman-1-0 is already the newest version (0.44.0-3).
libpixman-1-0 set to manually installed.
r-cran-matrixstats is already the newest version (1.4.1-1).
r-cran-matrixstats set to manually installed.
zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1).
zlib1g-dev set to manually installed.
libpsl5t64 is already the newest version (0.21.2-1.1+b1).
libpsl5t64 set to manually installed.
r-bioc-rtracklayer is already the newest version (1.66.0-2).
r-bioc-rtracklayer set to manually installed.
libattr1 is already the newest version (1:2.5.2-2).
libbinutils is already the newest version (2.43.50.20250108-1).
libbinutils set to manually installed.
libdeflate-dev is already the newest version (1.22-1).
libdeflate-dev set to manually installed.
libcom-err2 is already the newest version (1.47.2-1).
libcom-err2 set to manually installed.
libgcc-14-dev is already the newest version (14.2.0-13).
libgcc-14-dev set to manually installed.
r-bioc-genomicfeatures is already the newest version (1.58.0+dfsg-2).
r-bioc-genomicfeatures set to manually installed.
r-bioc-sparsearray is already the newest version (1.6.0+dfsg-2).
r-bioc-sparsearray set to manually installed.
libpng-dev is already the newest version (1.6.45-1).
libpng-dev set to manually installed.
libswitch-perl is already the newest version (2.17-3).
libswitch-perl set to manually installed.
libpaper2 is already the newest version (2.2.5-0.3).
libpaper2 set to manually installed.
libsub-exporter-progressive-perl is already the newest version (0.001013-3).
libsub-exporter-progressive-perl set to manually installed.
ucf is already the newest version (3.0046).
ucf set to manually installed.
r-bioc-bsgenome is already the newest version (1.74.0-2).
r-bioc-bsgenome set to manually installed.
libelf1t64 is already the newest version (0.192-4).
libelf1t64 set to manually installed.
r-cran-cachem is already the newest version (1.1.0-1).
r-cran-cachem set to manually installed.
libdevel-stacktrace-perl is already the newest version (2.0500-1).
libdevel-stacktrace-perl set to manually installed.
file is already the newest version (1:5.45-3+b1).
file set to manually installed.
patch is already the newest version (2.7.6-7).
patch set to manually installed.
r-cran-memoise is already the newest version (2.0.1-1).
r-cran-memoise set to manually installed.
libpackage-deprecationmanager-perl is already the newest version (0.18-1).
libpackage-deprecationmanager-perl set to manually installed.
r-cran-bit64 is already the newest version (4.0.5-1).
r-cran-bit64 set to manually installed.
libtool is already the newest version (2.5.4-2).
libtool set to manually installed.
libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.2+b1).
libxml2 set to manually installed.
g++ is already the newest version (4:14.2.0-1).
g++ set to manually installed.
libsmartcols1 is already the newest version (2.40.3-1).
libpam-modules is already the newest version (1.5.3-7+b1).
libtry-tiny-perl is already the newest version (0.32-1).
libtry-tiny-perl set to manually installed.
gcc-14 is already the newest version (14.2.0-13).
gcc-14 set to manually installed.
libgcc-s1 is already the newest version (14.2.0-13).
zip is already the newest version (3.0-14).
zip set to manually installed.
r-cran-rjson is already the newest version (0.2.23-1).
r-cran-rjson set to manually installed.
cpp is already the newest version (4:14.2.0-1).
cpp set to manually installed.
make is already the newest version (4.4.1-1).
make set to manually installed.
libdist-checkconflicts-perl is already the newest version (0.11-2).
libdist-checkconflicts-perl set to manually installed.
libboost-dev is already the newest version (1.83.0.2+b2).
libboost-dev set to manually installed.
libicu-dev is already the newest version (72.1-6).
libicu-dev set to manually installed.
cpp-x86-64-linux-gnu is already the newest version (4:14.2.0-1).
cpp-x86-64-linux-gnu set to manually installed.
libbz2-dev is already the newest version (1.0.8-6).
libbz2-dev set to manually installed.
libzstd1 is already the newest version (1.5.6+dfsg-2).
procps is already the newest version (2:4.0.4-6).
procps set to manually installed.
dpkg-dev is already the newest version (1.22.13).
dpkg-dev set to manually installed.
dpkg is already the newest version (1.22.13).
g++-x86-64-linux-gnu is already the newest version (4:14.2.0-1).
g++-x86-64-linux-gnu set to manually installed.
libc6-dev is already the newest version (2.40-5).
libc6-dev set to manually installed.
libblkid1 is already the newest version (2.40.3-1).
fonts-dejavu-core is already the newest version (2.37-8).
fonts-dejavu-core set to manually installed.
r-bioc-biocparallel is already the newest version (1.40.0-2).
r-bioc-biocparallel set to manually installed.
r-cran-formatr is already the newest version (1.14-2).
r-cran-formatr set to manually installed.
libx11-6 is already the newest version (2:1.8.10-2).
libx11-6 set to manually installed.
libseccomp2 is already the newest version (2.5.5-2).
libseccomp2 set to manually installed.
bsdextrautils is already the newest version (2.40.3-1).
bsdextrautils set to manually installed.
findutils is already the newest version (4.10.0-3).
binutils-common is already the newest version (2.43.50.20250108-1).
binutils-common set to manually installed.
r-cran-restfulr is already the newest version (0.0.15-1).
r-cran-restfulr set to manually installed.
libblas3 is already the newest version (3.12.0-4).
libblas3 set to manually installed.
libpcre2-dev is already the newest version (10.44-5).
libpcre2-dev set to manually installed.
libtirpc-common is already the newest version (1.3.4+ds-1.3).
libtirpc-common set to manually installed.
libffi8 is already the newest version (3.4.6-1).
libffi8 set to manually installed.
libitm1 is already the newest version (14.2.0-13).
libitm1 set to manually installed.
libreadline-dev is already the newest version (8.2-6).
libreadline-dev set to manually installed.
gettext is already the newest version (0.22.5-4).
gettext set to manually installed.
libcrypt-dev is already the newest version (1:4.4.36-5).
libcrypt-dev set to manually installed.
libmagic-mgc is already the newest version (1:5.45-3+b1).
libmagic-mgc set to manually installed.
libx11-data is already the newest version (2:1.8.10-2).
libx11-data set to manually installed.
libsub-name-perl is already the newest version (0.28-1).
libsub-name-perl set to manually installed.
r-bioc-biocio is already the newest version (1.16.0+dfsg-2).
r-bioc-biocio set to manually installed.
r-cran-glue is already the newest version (1.8.0-1).
r-cran-glue set to manually installed.
libxdmcp6 is already the newest version (1:1.1.5-1).
libxdmcp6 set to manually installed.
gfortran-14-x86-64-linux-gnu is already the newest version (14.2.0-13).
gfortran-14-x86-64-linux-gnu set to manually installed.
libaudit-common is already the newest version (1:4.0.2-2).
libngtcp2-16 is already the newest version (1.9.1-1).
libngtcp2-16 set to manually installed.
libpam0g is already the newest version (1.5.3-7+b1).
xauth is already the newest version (1:1.1.2-1.1).
xauth set to manually installed.
autoconf is already the newest version (2.72-3).
autoconf set to manually installed.
r-cran-codetools is already the newest version (0.2-20-1).
r-cran-codetools set to manually installed.
libgfortran5 is already the newest version (14.2.0-13).
libgfortran5 set to manually installed.
r-cran-lattice is already the newest version (0.22-6-1).
r-cran-lattice set to manually installed.
libdpkg-perl is already the newest version (1.22.13).
libdpkg-perl set to manually installed.
libstdc++6 is already the newest version (14.2.0-13).
libstdc++6 set to manually installed.
libice6 is already the newest version (2:1.1.1-1).
libice6 set to manually installed.
libjpeg62-turbo is already the newest version (1:2.1.5-3+b1).
libjpeg62-turbo set to manually installed.
libmpc3 is already the newest version (1.3.1-1+b3).
libmpc3 set to manually installed.
libdatrie1 is already the newest version (0.2.13-3+b1).
libdatrie1 set to manually installed.
libgraphite2-3 is already the newest version (1.3.14-2+b1).
libgraphite2-3 set to manually installed.
libbrotli1 is already the newest version (1.1.0-2+b6).
libbrotli1 set to manually installed.
gzip is already the newest version (1.12-1.2).
r-bioc-rhtslib is already the newest version (3.2.0+dfsg-2).
r-bioc-rhtslib set to manually installed.
build-essential is already the newest version (12.12).
build-essential set to manually installed.
r-cran-yaml is already the newest version (2.3.10-1).
r-cran-yaml set to manually installed.
libssl3t64 is already the newest version (3.4.0-2).
pkgconf is already the newest version (1.8.1-4).
pkgconf set to manually installed.
r-bioc-biocgenerics is already the newest version (0.52.0-2).
r-bioc-biocgenerics set to manually installed.
bash is already the newest version (5.2.37-1).
libdevel-callchecker-perl is already the newest version (0.009-1+b1).
libdevel-callchecker-perl set to manually installed.
libncursesw6 is already the newest version (6.5-2+b1).
libncursesw6 set to manually installed.
librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5).
librtmp1 set to manually installed.
libudev1 is already the newest version (257.2-1).
r-cran-httr is already the newest version (1.4.7+dfsg-1).
r-cran-httr set to manually installed.
autotools-dev is already the newest version (20220109.1).
autotools-dev set to manually installed.
g++-14-x86-64-linux-gnu is already the newest version (14.2.0-13).
g++-14-x86-64-linux-gnu set to manually installed.
libbz2-1.0 is already the newest version (1.0.8-6).
libcurl3t64-gnutls is already the newest version (8.11.1-1).
libcurl3t64-gnutls set to manually installed.
libgprofng0 is already the newest version (2.43.50.20250108-1).
libgprofng0 set to manually installed.
r-cran-bit is already the newest version (4.0.5-1).
r-cran-bit set to manually installed.
libnghttp2-14 is already the newest version (1.64.0-1).
libnghttp2-14 set to manually installed.
xz-utils is already the newest version (5.6.3-1+b1).
xz-utils set to manually installed.
gcc-14-x86-64-linux-gnu is already the newest version (14.2.0-13).
gcc-14-x86-64-linux-gnu set to manually installed.
libsub-identify-perl is already the newest version (0.14-3+b3).
libsub-identify-perl set to manually installed.
r-cran-xml is already the newest version (3.99-0.18-1).
r-cran-xml set to manually installed.
libdevel-globaldestruction-perl is already the newest version (0.14-4).
libdevel-globaldestruction-perl set to manually installed.
r-cran-rlang is already the newest version (1.1.4-1).
r-cran-rlang set to manually installed.
libpcre2-8-0 is already the newest version (10.44-5).
util-linux is already the newest version (2.40.3-1).
libxft2 is already the newest version (2.3.6-1+b3).
libxft2 set to manually installed.
r-bioc-genomeinfodbdata is already the newest version (1.2.13-2).
r-bioc-genomeinfodbdata set to manually installed.
r-cran-openssl is already the newest version (2.2.0+dfsg-1).
r-cran-openssl set to manually installed.
liblzma-dev is already the newest version (5.6.3-1+b1).
liblzma-dev set to manually installed.
libpangocairo-1.0-0 is already the newest version (1.55.0+ds-3).
libpangocairo-1.0-0 set to manually installed.
libnghttp3-9 is already the newest version (1.6.0-2).
libnghttp3-9 set to manually installed.
grep is already the newest version (3.11-4).
fontconfig is already the newest version (2.15.0-2).
fontconfig set to manually installed.
libtinfo6 is already the newest version (6.5-2+b1).
dwz is already the newest version (0.15-1+b1).
dwz set to manually installed.
linux-libc-dev is already the newest version (6.12.9-1).
linux-libc-dev set to manually installed.
libgdbm-compat4t64 is already the newest version (1.24-2).
libgdbm-compat4t64 set to manually installed.
r-cran-lifecycle is already the newest version (1.0.4+dfsg-1).
r-cran-lifecycle set to manually installed.
libperl5.40 is already the newest version (5.40.0-8).
libperl5.40 set to manually installed.
r-bioc-ucsc.utils is already the newest version (1.2.0+ds-2).
r-bioc-ucsc.utils set to manually installed.
x11-common is already the newest version (1:7.7+23.2).
x11-common set to manually installed.
dh-autoreconf is already the newest version (20).
dh-autoreconf set to manually installed.
libclone-perl is already the newest version (0.47-1+b1).
libclone-perl set to manually installed.
r-cran-plogr is already the newest version (0.2.0-3).
r-cran-plogr set to manually installed.
libk5crypto3 is already the newest version (1.21.3-3).
libk5crypto3 set to manually installed.
r-cran-pkgconfig is already the newest version (2.0.3-2).
r-cran-pkgconfig set to manually installed.
libmount1 is already the newest version (2.40.3-1).
libthai-data is already the newest version (0.1.29-2).
libthai-data set to manually installed.
libtsan2 is already the newest version (14.2.0-13).
libtsan2 set to manually installed.
libmoose-perl is already the newest version (2.2207-1+b3).
libmoose-perl set to manually installed.
libtirpc-dev is already the newest version (1.3.4+ds-1.3+b1).
libtirpc-dev set to manually installed.
r-bioc-s4vectors is already the newest version (0.44.0+dfsg-2).
r-bioc-s4vectors set to manually installed.
r-cran-crayon is already the newest version (1.5.2-1).
r-cran-crayon set to manually installed.
libkeyutils1 is already the newest version (1.6.3-4).
libkeyutils1 set to manually installed.
libcrypt1 is already the newest version (1:4.4.36-5).
libjpeg-dev is already the newest version (1:2.1.5-3+b1).
libjpeg-dev set to manually installed.
r-cran-rcurl is already the newest version (1.98-1.16+dfsg-1).
r-cran-rcurl set to manually installed.
liblerc4 is already the newest version (4.0.0+ds-5).
liblerc4 set to manually installed.
libmodule-runtime-conflicts-perl is already the newest version (0.003-2).
libmodule-runtime-conflicts-perl set to manually installed.
libssh2-1t64 is already the newest version (1.11.1-1).
libssh2-1t64 set to manually installed.
libcurl4t64 is already the newest version (8.11.1-1).
libcurl4t64 set to manually installed.
init-system-helpers is already the newest version (1.68).
libdynaloader-functions-perl is already the newest version (0.004-1).
libdynaloader-functions-perl set to manually installed.
libxt6t64 is already the newest version (1:1.2.1-1.2+b2).
libxt6t64 set to manually installed.
libubsan1 is already the newest version (14.2.0-13).
libubsan1 set to manually installed.
diffutils is already the newest version (1:3.10-2).
libjansson4 is already the newest version (2.14-2+b3).
libjansson4 set to manually installed.
libcap-ng0 is already the newest version (0.8.5-4).
libarchive-zip-perl is already the newest version (1.68-1).
libarchive-zip-perl set to manually installed.
r-bioc-delayedarray is already the newest version (0.32.0+dfsg-2).
r-bioc-delayedarray set to manually installed.
cpp-14 is already the newest version (14.2.0-13).
cpp-14 set to manually installed.
libharfbuzz0b is already the newest version (10.1.0-2).
libharfbuzz0b set to manually installed.
libldap-2.5-0 is already the newest version (2.5.19+dfsg-1).
libldap-2.5-0 set to manually installed.
libncurses-dev is already the newest version (6.5-2+b1).
libncurses-dev set to manually installed.
openssl is already the newest version (3.4.0-2).
openssl set to manually installed.
libsasl2-modules-db is already the newest version (2.1.28+dfsg1-8).
libsasl2-modules-db set to manually installed.
libpangoft2-1.0-0 is already the newest version (1.55.0+ds-3).
libpangoft2-1.0-0 set to manually installed.
r-cran-futile.options is already the newest version (1.0.1-3).
r-cran-futile.options set to manually installed.
libfribidi0 is already the newest version (1.0.16-1).
libfribidi0 set to manually installed.
pkgconf-bin is already the newest version (1.8.1-4).
pkgconf-bin set to manually installed.
ca-certificates is already the newest version (20241223).
ca-certificates set to manually installed.
libwww-curl-perl is already the newest version (4.17-11).
libwww-curl-perl set to manually installed.
libtiff6 is already the newest version (4.5.1+git230720-5).
libtiff6 set to manually installed.
r-bioc-variantannotation is already the newest version (1.52.0-2).
r-bioc-variantannotation set to manually installed.
r-cran-dbi is already the newest version (1.2.3-1).
r-cran-dbi set to manually installed.
tzdata is already the newest version (2024b-5).
tzdata set to manually installed.
libpackage-stash-perl is already the newest version (0.40-1).
libpackage-stash-perl set to manually installed.
icu-devtools is already the newest version (72.1-6).
icu-devtools set to manually installed.
r-bioc-matrixgenerics is already the newest version (1.18.0-2).
r-bioc-matrixgenerics set to manually installed.
libxcb-render0 is already the newest version (1.17.0-2+b1).
libxcb-render0 set to manually installed.
r-bioc-biobase is already the newest version (2.66.0-2).
r-bioc-biobase set to manually installed.
base-passwd is already the newest version (3.6.6).
fontconfig-config is already the newest version (2.15.0-2).
fontconfig-config set to manually installed.
gcc-14-base is already the newest version (14.2.0-13).
libpipeline1 is already the newest version (1.5.8-1).
libpipeline1 set to manually installed.
gettext-base is already the newest version (0.22.5-4).
gettext-base set to manually installed.
dh-strip-nondeterminism is already the newest version (1.14.0-1).
dh-strip-nondeterminism set to manually installed.
libdeflate0 is already the newest version (1.22-1).
libdeflate0 set to manually installed.
libio-html-perl is already the newest version (1.004-3).
libio-html-perl set to manually installed.
libsystemd0 is already the newest version (257.2-1).
libxcb1 is already the newest version (1.17.0-2+b1).
libxcb1 set to manually installed.
libmodule-implementation-perl is already the newest version (0.09-2).
libmodule-implementation-perl set to manually installed.
libexpat1 is already the newest version (2.6.4-1).
libexpat1 set to manually installed.
gcc-x86-64-linux-gnu is already the newest version (4:14.2.0-1).
gcc-x86-64-linux-gnu set to manually installed.
libnettle8t64 is already the newest version (3.10-1+b1).
libnettle8t64 set to manually installed.
r-cran-mime is already the newest version (0.12-2).
r-cran-mime set to manually installed.
libncurses6 is already the newest version (6.5-2+b1).
libncurses6 set to manually installed.
libicu72 is already the newest version (72.1-6).
libicu72 set to manually installed.
fonts-dejavu-mono is already the newest version (2.37-8).
fonts-dejavu-mono set to manually installed.
libpam-runtime is already the newest version (1.5.3-7).
libtasn1-6 is already the newest version (4.19.0-3+b3).
libtasn1-6 set to manually installed.
dash is already the newest version (0.5.12-11).
libclass-c3-perl is already the newest version (0.35-2).
libclass-c3-perl set to manually installed.
libclass-load-xs-perl is already the newest version (0.10-2+b4).
libclass-load-xs-perl set to manually installed.
libgdbm6t64 is already the newest version (1.24-2).
libgdbm6t64 set to manually installed.
libeval-closure-perl is already the newest version (0.14-3).
libeval-closure-perl set to manually installed.
libmodule-runtime-perl is already the newest version (0.016-2).
libmodule-runtime-perl set to manually installed.
m4 is already the newest version (1.4.19-5).
m4 set to manually installed.
libtimedate-perl is already the newest version (2.3300-2).
libtimedate-perl set to manually installed.
r-bioc-genomicalignments is already the newest version (1.42.0-2).
r-bioc-genomicalignments set to manually installed.
libsm6 is already the newest version (2:1.2.4-1).
libsm6 set to manually installed.
libthai0 is already the newest version (0.1.29-2+b1).
libthai0 set to manually installed.
libb-hooks-op-check-perl is already the newest version (0.22-3+b2).
libb-hooks-op-check-perl set to manually installed.
libxcb-shm0 is already the newest version (1.17.0-2+b1).
libxcb-shm0 set to manually installed.
debianutils is already the newest version (5.21).
libacl1 is already the newest version (2.3.2-2+b1).
libnamespace-clean-perl is already the newest version (0.27-2).
libnamespace-clean-perl set to manually installed.
r-cran-bitops is already the newest version (1.0-8-1).
r-cran-bitops set to manually installed.
r-bioc-genomicranges is already the newest version (1.58.0+dfsg-2).
r-bioc-genomicranges set to manually installed.
r-cran-sys is already the newest version (3.4.3-1).
r-cran-sys set to manually installed.
liblzma5 is already the newest version (5.6.3-1+b1).
libwww-curl-simple-perl is already the newest version (0.100191-3).
libwww-curl-simple-perl set to manually installed.
libfile-which-perl is already the newest version (1.27-2).
libfile-which-perl set to manually installed.
r-cran-snow is already the newest version (1:0.4.4-2).
r-cran-snow set to manually installed.
r-cran-bh is already the newest version (1.84.0-1).
r-cran-bh set to manually installed.
libxext6 is already the newest version (2:1.3.4-1+b3).
libxext6 set to manually installed.
libtk8.6 is already the newest version (8.6.16-1).
libtk8.6 set to manually installed.
libmro-compat-perl is already the newest version (0.15-2).
libmro-compat-perl set to manually installed.
r-cran-cli is already the newest version (3.6.3-1).
r-cran-cli set to manually installed.
libpcre2-16-0 is already the newest version (10.44-5).
libpcre2-16-0 set to manually installed.
rpcsvc-proto is already the newest version (1.4.3-1).
rpcsvc-proto set to manually installed.
r-cran-jsonlite is already the newest version (1.8.9+dfsg-1).
r-cran-jsonlite set to manually installed.
openssl-provider-legacy is already the newest version (3.4.0-2).
libtirpc3t64 is already the newest version (1.3.4+ds-1.3+b1).
libtirpc3t64 set to manually installed.
cpp-14-x86-64-linux-gnu is already the newest version (14.2.0-13).
cpp-14-x86-64-linux-gnu set to manually installed.
unzip is already the newest version (6.0-28).
unzip set to manually installed.
debhelper is already the newest version (13.23).
debhelper set to manually installed.
libsframe1 is already the newest version (2.43.50.20250108-1).
libsframe1 set to manually installed.
liblwp-mediatypes-perl is already the newest version (6.04-2).
liblwp-mediatypes-perl set to manually installed.
r-bioc-iranges is already the newest version (2.40.1-2).
r-bioc-iranges set to manually installed.
libalgorithm-c3-perl is already the newest version (0.11-2).
libalgorithm-c3-perl set to manually installed.
libparams-classify-perl is already the newest version (0.015-2+b4).
libparams-classify-perl set to manually installed.
libxss1 is already the newest version (1:1.2.3-1+b3).
libxss1 set to manually installed.
libmd0 is already the newest version (1.1.0-2+b1).
libatomic1 is already the newest version (14.2.0-13).
libatomic1 set to manually installed.
libxau6 is already the newest version (1:1.0.11-1).
libxau6 set to manually installed.
r-bioc-genomeinfodb is already the newest version (1.42.1+dfsg-2).
r-bioc-genomeinfodb set to manually installed.
libtcl8.6 is already the newest version (8.6.16+dfsg-1).
libtcl8.6 set to manually installed.
libcairo2 is already the newest version (1.18.2-2).
libcairo2 set to manually installed.
r-cran-r6 is already the newest version (2.5.1-1).
r-cran-r6 set to manually installed.
libkrb5support0 is already the newest version (1.21.3-3).
libkrb5support0 set to manually installed.
libctf-nobfd0 is already the newest version (2.43.50.20250108-1).
libctf-nobfd0 set to manually installed.
r-cran-blob is already the newest version (1.2.4-1).
r-cran-blob set to manually installed.
autopoint is already the newest version (0.22.5-4).
autopoint set to manually installed.
bzip2 is already the newest version (1.0.8-6).
bzip2 set to manually installed.
libboost1.83-dev is already the newest version (1.83.0-4).
libboost1.83-dev set to manually installed.
libglib2.0-0t64 is already the newest version (2.82.4-1).
libglib2.0-0t64 set to manually installed.
libp11-kit0 is already the newest version (0.25.5-3).
libp11-kit0 set to manually installed.
binutils is already the newest version (2.43.50.20250108-1).
binutils set to manually installed.
zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1).
libpaper-utils is already the newest version (2.2.5-0.3).
libpaper-utils set to manually installed.
man-db is already the newest version (2.13.0-1).
man-db set to manually installed.
libparams-util-perl is already the newest version (1.102-3+b1).
libparams-util-perl set to manually installed.
libjbig0 is already the newest version (2.1-6.1+b2).
libjbig0 set to manually installed.
libpkgconf3 is already the newest version (1.8.1-4).
libpkgconf3 set to manually installed.
coreutils is already the newest version (9.5-1+b1).
perl is already the newest version (5.40.0-8).
perl set to manually installed.
r-bioc-keggrest is already the newest version (1.46.0+dfsg-2).
r-bioc-keggrest set to manually installed.
automake is already the newest version (1:1.16.5-1.3).
automake set to manually installed.
libsharpyuv0 is already the newest version (1.5.0-0.1).
libsharpyuv0 set to manually installed.
r-cran-curl is already the newest version (5.2.3+dfsg-1).
r-cran-curl set to manually installed.
libdb5.3t64 is already the newest version (5.3.28+dfsg2-9).
libvariable-magic-perl is already the newest version (0.64-1+b1).
libvariable-magic-perl set to manually installed.
libdata-optlist-perl is already the newest version (0.114-1).
libdata-optlist-perl set to manually installed.
libkrb5-3 is already the newest version (1.21.3-3).
libkrb5-3 set to manually installed.
binutils-x86-64-linux-gnu is already the newest version (2.43.50.20250108-1).
binutils-x86-64-linux-gnu set to manually installed.
sysvinit-utils is already the newest version (3.13-1).
debconf is already the newest version (1.5.89).
libpango-1.0-0 is already the newest version (1.55.0+ds-3).
libpango-1.0-0 set to manually installed.
readline-common is already the newest version (8.2-6).
readline-common set to manually installed.
libuuid1 is already the newest version (2.40.3-1).
dctrl-tools is already the newest version (2.24-3+b1).
dctrl-tools set to manually installed.
libfreetype6 is already the newest version (2.13.3+dfsg-1).
libfreetype6 set to manually installed.
r-cran-png is already the newest version (0.1-8-1+b1).
r-cran-png set to manually installed.
xdg-utils is already the newest version (1.2.1-2).
xdg-utils set to manually installed.
libhttp-date-perl is already the newest version (6.06-1).
libhttp-date-perl set to manually installed.
r-bioc-rsamtools is already the newest version (2.22.0+dfsg-2).
r-bioc-rsamtools set to manually installed.
r-cran-lambda.r is already the newest version (1.2.4-2).
r-cran-lambda.r set to manually installed.
libwebp7 is already the newest version (1.5.0-0.1).
libwebp7 set to manually installed.
r-bioc-annotationdbi is already the newest version (1.68.0-2).
r-bioc-annotationdbi set to manually installed.
gcc is already the newest version (4:14.2.0-1).
gcc set to manually installed.
libgomp1 is already the newest version (14.2.0-13).
libgomp1 set to manually installed.
libc6 is already the newest version (2.40-5).
libasan8 is already the newest version (14.2.0-13).
libasan8 set to manually installed.
liblsan0 is already the newest version (14.2.0-13).
liblsan0 set to manually installed.
r-bioc-zlibbioc is already the newest version (1.52.0+dfsg-2).
r-bioc-zlibbioc set to manually installed.
ncurses-bin is already the newest version (6.5-2+b1).
libxmuu1 is already the newest version (2:1.1.3-3+b4).
libxmuu1 set to manually installed.
intltool-debian is already the newest version (0.35.0+20060710.6).
intltool-debian set to manually installed.
bsdutils is already the newest version (1:2.40.3-1).
libgfortran-14-dev is already the newest version (14.2.0-13).
libgfortran-14-dev set to manually installed.
perl-base is already the newest version (5.40.0-8).
r-cran-vctrs is already the newest version (0.6.5-1).
r-cran-vctrs set to manually installed.
r-cran-matrix is already the newest version (1.7-1-1).
r-cran-matrix set to manually installed.
libdebconfclient0 is already the newest version (0.277).
base-files is already the newest version (13.6).
r-base-dev is already the newest version (4.4.2-1).
r-base-dev set to manually installed.
libmpfr6 is already the newest version (4.2.1-1+b2).
libmpfr6 set to manually installed.
libproc2-0 is already the newest version (2:4.0.4-6).
libproc2-0 set to manually installed.
r-cran-cpp11 is already the newest version (0.5.0-1).
r-cran-cpp11 set to manually installed.
libencode-locale-perl is already the newest version (1.05-3).
libencode-locale-perl set to manually installed.
libcap2 is already the newest version (1:2.66-5+b1).
gfortran is already the newest version (4:14.2.0-1).
gfortran set to manually installed.
libpcre2-32-0 is already the newest version (10.44-5).
libpcre2-32-0 set to manually installed.
r-cran-rsqlite is already the newest version (2.3.7-2).
r-cran-rsqlite set to manually installed.
libctf0 is already the newest version (2.43.50.20250108-1).
libctf0 set to manually installed.
libjpeg62-turbo-dev is already the newest version (1:2.1.5-3+b1).
libjpeg62-turbo-dev set to manually installed.
libreadline8t64 is already the newest version (8.2-6).
libreadline8t64 set to manually installed.
liblapack3 is already the newest version (3.12.0-4).
liblapack3 set to manually installed.
r-bioc-biostrings is already the newest version (2.74.1+dfsg-2).
r-bioc-biostrings set to manually installed.
liburi-perl is already the newest version (5.30-1).
liburi-perl set to manually installed.
libc-bin is already the newest version (2.40-5).
libgssapi-krb5-2 is already the newest version (1.21.3-3).
libgssapi-krb5-2 set to manually installed.
libclass-load-perl is already the newest version (0.25-2).
libclass-load-perl set to manually installed.
libc-dev-bin is already the newest version (2.40-5).
libc-dev-bin set to manually installed.
libxrender1 is already the newest version (1:0.9.10-1.1+b3).
libxrender1 set to manually installed.
r-base-core is already the newest version (4.4.2-1).
r-base-core set to manually installed.
libblas-dev is already the newest version (3.12.0-4).
libblas-dev set to manually installed.
sensible-utils is already the newest version (0.0.24).
sensible-utils set to manually installed.
mawk is already the newest version (1.3.4.20240905-1).
libhwasan0 is already the newest version (14.2.0-13).
libhwasan0 set to manually installed.
g++-14 is already the newest version (14.2.0-13).
g++-14 set to manually installed.
libgmp10 is already the newest version (2:6.3.0+dfsg-3).
libpng16-16t64 is already the newest version (1.6.45-1).
libpng16-16t64 set to manually installed.
r-bioc-summarizedexperiment is already the newest version (1.36.0+dfsg-2).
r-bioc-summarizedexperiment set to manually installed.
libquadmath0 is already the newest version (14.2.0-13).
libquadmath0 set to manually installed.
libb-hooks-endofscope-perl is already the newest version (0.28-1).
libb-hooks-endofscope-perl set to manually installed.
libpam-modules-bin is already the newest version (1.5.3-7+b1).
libhttp-message-perl is already the newest version (7.00-2).
libhttp-message-perl set to manually installed.
dh-r is already the newest version (20241218).
dh-r set to manually installed.
sed is already the newest version (4.9-2).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4
(Reading database ... 41844 files and directories currently installed.)
Removing debootsnap-dummy (1.0) ...
I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4
I: running special hook: download /pkglist ./pkglist
I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4
I: waiting for background processes to finish...
I: cleaning package lists and apt cache...
I: skipping cleanup/reproducible as requested
I: creating tarball...
I: done
I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.GbPRzm5Bq4...
I: success in 102.2671 seconds

Downloading dependency 256 of 380: libnamespace-clean-perl:amd64=0.27-2
Downloading dependency 257 of 380: r-cran-bitops:amd64=1.0-8-1
Downloading dependency 258 of 380: r-bioc-genomicranges:amd64=1.58.0+dfsg-2
Downloading dependency 259 of 380: r-cran-sys:amd64=3.4.3-1
Downloading dependency 260 of 380: liblzma5:amd64=5.6.3-1+b1
Downloading dependency 261 of 380: libwww-curl-simple-perl:amd64=0.100191-3
Downloading dependency 262 of 380: libfile-which-perl:amd64=1.27-2
Downloading dependency 263 of 380: r-cran-snow:amd64=1:0.4.4-2
Downloading dependency 264 of 380: r-cran-bh:amd64=1.84.0-1
Downloading dependency 265 of 380: libxext6:amd64=2:1.3.4-1+b3
Downloading dependency 266 of 380: libtk8.6:amd64=8.6.16-1
Downloading dependency 267 of 380: libmro-compat-perl:amd64=0.15-2
Downloading dependency 268 of 380: r-cran-cli:amd64=3.6.3-1
Downloading dependency 269 of 380: libpcre2-16-0:amd64=10.44-5
Downloading dependency 270 of 380: rpcsvc-proto:amd64=1.4.3-1
Downloading dependency 271 of 380: r-cran-jsonlite:amd64=1.8.9+dfsg-1
Downloading dependency 272 of 380: openssl-provider-legacy:amd64=3.4.0-2
Downloading dependency 273 of 380: libtirpc3t64:amd64=1.3.4+ds-1.3+b1
Downloading dependency 274 of 380: cpp-14-x86-64-linux-gnu:amd64=14.2.0-13
Downloading dependency 275 of 380: unzip:amd64=6.0-28
Downloading dependency 276 of 380: debhelper:amd64=13.23
Downloading dependency 277 of 380: libsframe1:amd64=2.43.50.20250108-1
Downloading dependency 278 of 380: liblwp-mediatypes-perl:amd64=6.04-2
Downloading dependency 279 of 380: r-bioc-iranges:amd64=2.40.1-2
Downloading dependency 280 of 380: libalgorithm-c3-perl:amd64=0.11-2
Downloading dependency 281 of 380: libparams-classify-perl:amd64=0.015-2+b4
Downloading dependency 282 of 380: libxss1:amd64=1:1.2.3-1+b3
Downloading dependency 283 of 380: libmd0:amd64=1.1.0-2+b1
Downloading dependency 284 of 380: libatomic1:amd64=14.2.0-13
Downloading dependency 285 of 380: libxau6:amd64=1:1.0.11-1
Downloading dependency 286 of 380: r-bioc-genomeinfodb:amd64=1.42.1+dfsg-2
Downloading dependency 287 of 380: libtcl8.6:amd64=8.6.16+dfsg-1
Downloading dependency 288 of 380: libcairo2:amd64=1.18.2-2
Downloading dependency 289 of 380: r-cran-r6:amd64=2.5.1-1
Downloading dependency 290 of 380: libkrb5support0:amd64=1.21.3-3
Downloading dependency 291 of 380: libctf-nobfd0:amd64=2.43.50.20250108-1
Downloading dependency 292 of 380: r-cran-blob:amd64=1.2.4-1
Downloading dependency 293 of 380: autopoint:amd64=0.22.5-4
Downloading dependency 294 of 380: bzip2:amd64=1.0.8-6
Downloading dependency 295 of 380: libboost1.83-dev:amd64=1.83.0-4
Downloading dependency 296 of 380: libglib2.0-0t64:amd64=2.82.4-1
Downloading dependency 297 of 380: libp11-kit0:amd64=0.25.5-3
Downloading dependency 298 of 380: binutils:amd64=2.43.50.20250108-1
Downloading dependency 299 of 380: zlib1g:amd64=1:1.3.dfsg+really1.3.1-1+b1
Downloading dependency 300 of 380: libpaper-utils:amd64=2.2.5-0.3
Downloading dependency 301 of 380: man-db:amd64=2.13.0-1
Downloading dependency 302 of 380: libparams-util-perl:amd64=1.102-3+b1
Downloading dependency 303 of 380: libjbig0:amd64=2.1-6.1+b2
Downloading dependency 304 of 380: libpkgconf3:amd64=1.8.1-4
Downloading dependency 305 of 380: coreutils:amd64=9.5-1+b1
Downloading dependency 306 of 380: perl:amd64=5.40.0-8
Downloading dependency 307 of 380: r-bioc-keggrest:amd64=1.46.0+dfsg-2
Downloading dependency 308 of 380: automake:amd64=1:1.16.5-1.3
Downloading dependency 309 of 380: libsharpyuv0:amd64=1.5.0-0.1
Downloading dependency 310 of 380: r-cran-curl:amd64=5.2.3+dfsg-1
Downloading dependency 311 of 380: libdb5.3t64:amd64=5.3.28+dfsg2-9
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Downloading dependency 314 of 380: libkrb5-3:amd64=1.21.3-3
Downloading dependency 315 of 380: binutils-x86-64-linux-gnu:amd64=2.43.50.20250108-1
Downloading dependency 316 of 380: sysvinit-utils:amd64=3.13-1
Downloading dependency 317 of 380: debconf:amd64=1.5.89
Downloading dependency 318 of 380: libpango-1.0-0:amd64=1.55.0+ds-3
Downloading dependency 319 of 380: readline-common:amd64=8.2-6
Downloading dependency 320 of 380: libuuid1:amd64=2.40.3-1
Downloading dependency 321 of 380: dctrl-tools:amd64=2.24-3+b1
Downloading dependency 322 of 380: libfreetype6:amd64=2.13.3+dfsg-1
Downloading dependency 323 of 380: r-cran-png:amd64=0.1-8-1+b1
Downloading dependency 324 of 380: xdg-utils:amd64=1.2.1-2
Downloading dependency 325 of 380: libhttp-date-perl:amd64=6.06-1
Downloading dependency 326 of 380: r-bioc-rsamtools:amd64=2.22.0+dfsg-2
Downloading dependency 327 of 380: r-cran-lambda.r:amd64=1.2.4-2
Downloading dependency 328 of 380: libwebp7:amd64=1.5.0-0.1
Downloading dependency 329 of 380: r-bioc-annotationdbi:amd64=1.68.0-2
Downloading dependency 330 of 380: gcc:amd64=4:14.2.0-1
Downloading dependency 331 of 380: libgomp1:amd64=14.2.0-13
Downloading dependency 332 of 380: libc6:amd64=2.40-5
Downloading dependency 333 of 380: libasan8:amd64=14.2.0-13
Downloading dependency 334 of 380: liblsan0:amd64=14.2.0-13
Downloading dependency 335 of 380: r-bioc-zlibbioc:amd64=1.52.0+dfsg-2
Downloading dependency 336 of 380: ncurses-bin:amd64=6.5-2+b1
Downloading dependency 337 of 380: libxmuu1:amd64=2:1.1.3-3+b4
Downloading dependency 338 of 380: intltool-debian:amd64=0.35.0+20060710.6
Downloading dependency 339 of 380: bsdutils:amd64=1:2.40.3-1
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Downloading dependency 341 of 380: perl-base:amd64=5.40.0-8
Downloading dependency 342 of 380: r-cran-vctrs:amd64=0.6.5-1
Downloading dependency 343 of 380: r-cran-matrix:amd64=1.7-1-1
Downloading dependency 344 of 380: libdebconfclient0:amd64=0.277
Downloading dependency 345 of 380: base-files:amd64=13.6
Downloading dependency 346 of 380: r-base-dev:amd64=4.4.2-1
Downloading dependency 347 of 380: libmpfr6:amd64=4.2.1-1+b2
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Downloading dependency 349 of 380: r-cran-cpp11:amd64=0.5.0-1
Downloading dependency 350 of 380: libencode-locale-perl:amd64=1.05-3
Downloading dependency 351 of 380: libcap2:amd64=1:2.66-5+b1
Downloading dependency 352 of 380: gfortran:amd64=4:14.2.0-1
Downloading dependency 353 of 380: libpcre2-32-0:amd64=10.44-5
Downloading dependency 354 of 380: r-cran-rsqlite:amd64=2.3.7-2
Downloading dependency 355 of 380: libctf0:amd64=2.43.50.20250108-1
Downloading dependency 356 of 380: libjpeg62-turbo-dev:amd64=1:2.1.5-3+b1
Downloading dependency 357 of 380: libreadline8t64:amd64=8.2-6
Downloading dependency 358 of 380: liblapack3:amd64=3.12.0-4
Downloading dependency 359 of 380: r-bioc-biostrings:amd64=2.74.1+dfsg-2
Downloading dependency 360 of 380: liburi-perl:amd64=5.30-1
Downloading dependency 361 of 380: libc-bin:amd64=2.40-5
Downloading dependency 362 of 380: libgssapi-krb5-2:amd64=1.21.3-3
Downloading dependency 363 of 380: libclass-load-perl:amd64=0.25-2
Downloading dependency 364 of 380: libc-dev-bin:amd64=2.40-5
Downloading dependency 365 of 380: libxrender1:amd64=1:0.9.10-1.1+b3
Downloading dependency 366 of 380: r-base-core:amd64=4.4.2-1
Downloading dependency 367 of 380: libblas-dev:amd64=3.12.0-4
Downloading dependency 368 of 380: sensible-utils:amd64=0.0.24
Downloading dependency 369 of 380: mawk:amd64=1.3.4.20240905-1
Downloading dependency 370 of 380: libhwasan0:amd64=14.2.0-13
Downloading dependency 371 of 380: g++-14:amd64=14.2.0-13
Downloading dependency 372 of 380: libgmp10:amd64=2:6.3.0+dfsg-3
Downloading dependency 373 of 380: libpng16-16t64:amd64=1.6.45-1
Downloading dependency 374 of 380: r-bioc-summarizedexperiment:amd64=1.36.0+dfsg-2
Downloading dependency 375 of 380: libquadmath0:amd64=14.2.0-13
Downloading dependency 376 of 380: libb-hooks-endofscope-perl:amd64=0.28-1
Downloading dependency 377 of 380: libpam-modules-bin:amd64=1.5.3-7+b1
Downloading dependency 378 of 380: libhttp-message-perl:amd64=7.00-2
Downloading dependency 379 of 380: dh-r:amd64=20241218
Downloading dependency 380 of 380: sed:amd64=4.9-2
env --chdir=/srv/rebuilderd/tmp/rebuilderdg2ojDx/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1736840694 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildUYNzAQ/debrebuild.sbuildrc.alHhn7Pf0Qil sbuild --build=amd64 --host=amd64 --no-source --no-arch-any --arch-all --chroot=/srv/rebuilderd/tmp/debrebuildUYNzAQ/debrebuild.tar.P7kCDRShkdIO --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=r-bioc-genomicfiles-1.42.0+dfsg /srv/rebuilderd/tmp/rebuilderdg2ojDx/inputs/r-bioc-genomicfiles_1.42.0+dfsg-2.dsc
I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl
The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future.
To start using "unshare" add this to your `~/.config/sbuild/config.pl`:
	$chroot_mode = "unshare";
If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`:
	$chroot_mode = "schroot";
	$schroot = "schroot";
sbuild (Debian sbuild) 0.89.3 (07 June 2025) on ionos17-amd64

+==============================================================================+
| r-bioc-genomicfiles 1.42.0+dfsg-2 (amd64)    Mon, 11 Aug 2025 15:54:51 +0000 |
+==============================================================================+

Package: r-bioc-genomicfiles
Version: 1.42.0+dfsg-2
Source Version: 1.42.0+dfsg-2
Distribution: unstable
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: all

I: No tarballs found in /srv/rebuilderd/.cache/sbuild
I: Unpacking /srv/diskspace/rebuilderd_tmp/debrebuildUYNzAQ/debrebuild.tar.P7kCDRShkdIO to /srv/rebuilderd/tmp/tmp.sbuild.9pHzqMyMjF...
I: Setting up the chroot...
I: Creating chroot session...
I: Setting up log color...
I: Setting up apt archive...

+------------------------------------------------------------------------------+
| Fetch source files                           Mon, 11 Aug 2025 15:55:03 +0000 |
+------------------------------------------------------------------------------+


Local sources
-------------

/srv/rebuilderd/tmp/rebuilderdg2ojDx/inputs/r-bioc-genomicfiles_1.42.0+dfsg-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdg2ojDx/inputs; copying to chroot

+------------------------------------------------------------------------------+
| Install package build dependencies           Mon, 11 Aug 2025 15:55:05 +0000 |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-genomicalignments, r-bioc-iranges, r-bioc-s4vectors, r-bioc-variantannotation, r-bioc-genomeinfodb, build-essential
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-genomicalignments, r-bioc-iranges, r-bioc-s4vectors, r-bioc-variantannotation, r-bioc-genomeinfodb, build-essential
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-ZdEgAE/apt_archive/sbuild-build-depends-main-dummy.deb'.

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies

+------------------------------------------------------------------------------+
| Check architectures                          Mon, 11 Aug 2025 15:55:23 +0000 |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in all)

+------------------------------------------------------------------------------+
| Build environment                            Mon, 11 Aug 2025 15:55:24 +0000 |
+------------------------------------------------------------------------------+

Kernel: Linux 6.12.38+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.38-1 (2025-07-16) amd64 (x86_64)
Toolchain package versions: binutils_2.43.50.20250108-1 dpkg-dev_1.22.13 g++-14_14.2.0-13 gcc-14_14.2.0-13 libc6-dev_2.40-5 libstdc++-14-dev_14.2.0-13 libstdc++6_14.2.0-13 linux-libc-dev_6.12.9-1
Package versions: autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-4 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1 binutils_2.43.50.20250108-1 binutils-common_2.43.50.20250108-1 binutils-x86-64-linux-gnu_2.43.50.20250108-1 bsdextrautils_2.40.3-1 bsdutils_1:2.40.3-1 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20241223 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-13 cpp-14-x86-64-linux-gnu_14.2.0-13 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-11 dctrl-tools_2.24-3+b1 debconf_1.5.89 debhelper_13.23 debianutils_5.21 dh-autoreconf_20 dh-r_20241218 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-2 dpkg_1.22.13 dpkg-dev_1.22.13 dwz_0.15-1+b1 file_1:5.45-3+b1 findutils_4.10.0-3 fontconfig_2.15.0-2 fontconfig-config_2.15.0-2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-13 g++-14-x86-64-linux-gnu_14.2.0-13 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-13 gcc-14-base_14.2.0-13 gcc-14-x86-64-linux-gnu_14.2.0-13 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.22.5-4 gettext-base_0.22.5-4 gfortran_4:14.2.0-1 gfortran-14_14.2.0-13 gfortran-14-x86-64-linux-gnu_14.2.0-13 gfortran-x86-64-linux-gnu_4:14.2.0-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.12-1.2 hostname_3.25 icu-devtools_72.1-6 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libalgorithm-c3-perl_0.11-2 libarchive-zip-perl_1.68-1 libasan8_14.2.0-13 libatomic1_14.2.0-13 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2 libb-hooks-endofscope-perl_0.28-1 libb-hooks-op-check-perl_0.22-3+b2 libbinutils_2.43.50.20250108-1 libblas-dev_3.12.0-4 libblas3_3.12.0-4 libblkid1_2.40.3-1 libboost-dev_1.83.0.2+b2 libboost1.83-dev_1.83.0-4 libbrotli1_1.1.0-2+b6 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-5 libc-dev-bin_2.40-5 libc6_2.40-5 libc6-dev_2.40-5 libcairo2_1.18.2-2 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-13 libclass-c3-perl_0.35-2 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+------------------------------------------------------------------------------+
| Build                                        Mon, 11 Aug 2025 15:55:24 +0000 |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-genomicfiles
Binary: r-bioc-genomicfiles
Architecture: all
Version: 1.42.0+dfsg-2
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://bioconductor.org/packages/GenomicFiles/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicfiles
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicfiles.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-genomicalignments, r-bioc-iranges, r-bioc-s4vectors, r-bioc-variantannotation, r-bioc-genomeinfodb
Package-List:
 r-bioc-genomicfiles deb gnu-r optional arch=all
Checksums-Sha1:
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Checksums-Sha256:
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dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.42.0+dfsg-2.dsc: unsupported subcommand
dpkg-source: info: extracting r-bioc-genomicfiles in /build/reproducible-path/r-bioc-genomicfiles-1.42.0+dfsg
dpkg-source: info: unpacking r-bioc-genomicfiles_1.42.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-genomicfiles_1.42.0+dfsg-2.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=6
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LC_COLLATE=C.UTF-8
LC_CTYPE=C.UTF-8
LOGNAME=sbuild
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
SOURCE_DATE_EPOCH=1736840694
USER=sbuild

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -A
dpkg-buildpackage: info: source package r-bioc-genomicfiles
dpkg-buildpackage: info: source version 1.42.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
 dpkg-source --before-build .
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-indep
dh binary-indep --buildsystem R
   dh_update_autotools_config -i -O--buildsystem=R
   dh_autoreconf -i -O--buildsystem=R
   dh_auto_configure -i -O--buildsystem=R
   dh_auto_build -i -O--buildsystem=R
   dh_auto_test -i -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -i -O--buildsystem=R
   dh_prep -i -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-genomicfiles/ -i -O--buildsystem=R
I: R Package: GenomicFiles Version: 1.42.0
I: Building using R version 4.4.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 14 Jan 2025 08:44:54 +0100
	mkdir -p /build/reproducible-path/r-bioc-genomicfiles-1.42.0\+dfsg/debian/r-bioc-genomicfiles/usr/lib/R/site-library
	R CMD INSTALL -l /build/reproducible-path/r-bioc-genomicfiles-1.42.0\+dfsg/debian/r-bioc-genomicfiles/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 14 Jan 2025 08:44:54 +0100'"
* installing *source* package ‘GenomicFiles’ ...
file ‘inst/doc/GenomicFiles.html’ is missing
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicFiles)
/bin/sh: 1: apt-cache: not found
grep-aptavail: command (apt-cache dumpavail) failed (exit status 127)
W: Ignoring specified R dependency: R (>= 3.1.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.11.2)
I: Using r-bioc-matrixgenerics for Depends:MatrixGenerics
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.31.16)
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment
I: Using r-bioc-biocparallel for Depends:BiocParallel (>= 1.1.0)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.17.29)
I: Using r-bioc-rtracklayer for Depends:rtracklayer (>= 1.25.3)
W: Cannot find a debian package for Suggests:BiocStyle
W: Cannot find a debian package for Suggests:RUnit
W: Cannot find a debian package for Suggests:genefilter
W: Cannot find a debian package for Suggests:deepSNV
W: Cannot find a debian package for Suggests:snpStats
W: Cannot find a debian package for Suggests:knitr
W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14
I: Using r-bioc-biostrings for Suggests:Biostrings
W: Cannot find a debian package for Suggests:Homo.sapiens
I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.7.7)
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.25)
I: Using r-bioc-variantannotation for Imports:VariantAnnotation (>= 1.27.9)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb
I: BioConductor API version: r-api-bioc-3.20
I: Use r-bioc-genomicfiles as Debian binary package for variables substitution
   dh_installdocs -i -O--buildsystem=R
   dh_installchangelogs -i -O--buildsystem=R
   dh_installsystemduser -i -O--buildsystem=R
   dh_perl -i -O--buildsystem=R
   dh_link -i -O--buildsystem=R
   dh_strip_nondeterminism -i -O--buildsystem=R
   dh_compress -i -O--buildsystem=R
   dh_fixperms -i -O--buildsystem=R
   dh_missing -i -O--buildsystem=R
   dh_installdeb -i -O--buildsystem=R
   dh_gencontrol -i -O--buildsystem=R
   dh_md5sums -i -O--buildsystem=R
   dh_builddeb -i -O--buildsystem=R
dpkg-deb: building package 'r-bioc-genomicfiles' in '../r-bioc-genomicfiles_1.42.0+dfsg-2_all.deb'.
 dpkg-genbuildinfo --build=all -O../r-bioc-genomicfiles_1.42.0+dfsg-2_all.buildinfo
 dpkg-genchanges --build=all -O../r-bioc-genomicfiles_1.42.0+dfsg-2_all.changes
dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2025-08-11T15:56:00Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                      Mon, 11 Aug 2025 15:56:01 +0000 |
+------------------------------------------------------------------------------+


r-bioc-genomicfiles_1.42.0+dfsg-2_all.changes:
----------------------------------------------

Format: 1.8
Date: Tue, 14 Jan 2025 08:44:54 +0100
Source: r-bioc-genomicfiles
Binary: r-bioc-genomicfiles
Architecture: all
Version: 1.42.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 r-bioc-genomicfiles - Distributed computing by file or by range
Changes:
 r-bioc-genomicfiles (1.42.0+dfsg-2) unstable; urgency=medium
 .
   * Team upload.
   * Upload to unstable.
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Checksums-Sha256:
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Files:
 e4febed13bc47102b74a787f74f75719 12090 gnu-r optional r-bioc-genomicfiles_1.42.0+dfsg-2_all.buildinfo
 a9d217b94c821fc224d427613d727971 542352 gnu-r optional r-bioc-genomicfiles_1.42.0+dfsg-2_all.deb

+------------------------------------------------------------------------------+
| Buildinfo                                    Mon, 11 Aug 2025 15:56:01 +0000 |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-bioc-genomicfiles
Binary: r-bioc-genomicfiles
Architecture: all
Version: 1.42.0+dfsg-2
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Mon, 11 Aug 2025 15:56:00 +0000
Build-Path: /build/reproducible-path/r-bioc-genomicfiles-1.42.0+dfsg
Installed-Build-Depends:
 autoconf (= 2.72-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.22.5-4),
 autotools-dev (= 20220109.1),
 base-files (= 13.6),
 base-passwd (= 3.6.6),
 bash (= 5.2.37-1),
 binutils (= 2.43.50.20250108-1),
 binutils-common (= 2.43.50.20250108-1),
 binutils-x86-64-linux-gnu (= 2.43.50.20250108-1),
 bsdextrautils (= 2.40.3-1),
 bsdutils (= 1:2.40.3-1),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 ca-certificates (= 20241223),
 coreutils (= 9.5-1+b1),
 cpp (= 4:14.2.0-1),
 cpp-14 (= 14.2.0-13),
 cpp-14-x86-64-linux-gnu (= 14.2.0-13),
 cpp-x86-64-linux-gnu (= 4:14.2.0-1),
 dash (= 0.5.12-11),
 dctrl-tools (= 2.24-3+b1),
 debconf (= 1.5.89),
 debhelper (= 13.23),
 debianutils (= 5.21),
 dh-autoreconf (= 20),
 dh-r (= 20241218),
 dh-strip-nondeterminism (= 1.14.0-1),
 diffutils (= 1:3.10-2),
 dpkg (= 1.22.13),
 dpkg-dev (= 1.22.13),
 dwz (= 0.15-1+b1),
 file (= 1:5.45-3+b1),
 findutils (= 4.10.0-3),
 fontconfig (= 2.15.0-2),
 fontconfig-config (= 2.15.0-2),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:14.2.0-1),
 g++-14 (= 14.2.0-13),
 g++-14-x86-64-linux-gnu (= 14.2.0-13),
 g++-x86-64-linux-gnu (= 4:14.2.0-1),
 gcc (= 4:14.2.0-1),
 gcc-14 (= 14.2.0-13),
 gcc-14-base (= 14.2.0-13),
 gcc-14-x86-64-linux-gnu (= 14.2.0-13),
 gcc-x86-64-linux-gnu (= 4:14.2.0-1),
 gettext (= 0.22.5-4),
 gettext-base (= 0.22.5-4),
 gfortran (= 4:14.2.0-1),
 gfortran-14 (= 14.2.0-13),
 gfortran-14-x86-64-linux-gnu (= 14.2.0-13),
 gfortran-x86-64-linux-gnu (= 4:14.2.0-1),
 grep (= 3.11-4),
 groff-base (= 1.23.0-7),
 gzip (= 1.12-1.2),
 hostname (= 3.25),
 icu-devtools (= 72.1-6),
 init-system-helpers (= 1.68),
 intltool-debian (= 0.35.0+20060710.6),
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 libaudit-common (= 1:4.0.2-2),
 libaudit1 (= 1:4.0.2-2),
 libb-hooks-endofscope-perl (= 0.28-1),
 libb-hooks-op-check-perl (= 0.22-3+b2),
 libbinutils (= 2.43.50.20250108-1),
 libblas-dev (= 3.12.0-4),
 libblas3 (= 3.12.0-4),
 libblkid1 (= 2.40.3-1),
 libboost-dev (= 1.83.0.2+b2),
 libboost1.83-dev (= 1.83.0-4),
 libbrotli1 (= 1.1.0-2+b6),
 libbz2-1.0 (= 1.0.8-6),
 libbz2-dev (= 1.0.8-6),
 libc-bin (= 2.40-5),
 libc-dev-bin (= 2.40-5),
 libc6 (= 2.40-5),
 libc6-dev (= 2.40-5),
 libcairo2 (= 1.18.2-2),
 libcap-ng0 (= 0.8.5-4),
 libcap2 (= 1:2.66-5+b1),
 libcc1-0 (= 14.2.0-13),
 libclass-c3-perl (= 0.35-2),
 libclass-load-perl (= 0.25-2),
 libclass-load-xs-perl (= 0.10-2+b4),
 libclone-perl (= 0.47-1+b1),
 libcom-err2 (= 1.47.2-1),
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 libcurl3t64-gnutls (= 8.11.1-1),
 libcurl4t64 (= 8.11.1-1),
 libdata-optlist-perl (= 0.114-1),
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 libdebhelper-perl (= 13.23),
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 libdeflate0 (= 1.22-1),
 libdevel-callchecker-perl (= 0.009-1+b1),
 libdevel-globaldestruction-perl (= 0.14-4),
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 libfile-which-perl (= 1.27-2),
 libfontconfig1 (= 2.15.0-2),
 libfreetype6 (= 2.13.3+dfsg-1),
 libfribidi0 (= 1.0.16-1),
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 libgprofng0 (= 2.43.50.20250108-1),
 libgraphite2-3 (= 1.3.14-2+b1),
 libgssapi-krb5-2 (= 1.21.3-3),
 libharfbuzz0b (= 10.1.0-2),
 libhogweed6t64 (= 3.10-1+b1),
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 libhttp-message-perl (= 7.00-2),
 libhwasan0 (= 14.2.0-13),
 libice6 (= 2:1.1.1-1),
 libicu-dev (= 72.1-6),
 libicu72 (= 72.1-6),
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 libjpeg-dev (= 1:2.1.5-3+b1),
 libjpeg62-turbo (= 1:2.1.5-3+b1),
 libjpeg62-turbo-dev (= 1:2.1.5-3+b1),
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 liblzma5 (= 5.6.3-1+b1),
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 libmagic1t64 (= 1:5.45-3+b1),
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 libmodule-runtime-conflicts-perl (= 0.003-2),
 libmodule-runtime-perl (= 0.016-2),
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 libnamespace-clean-perl (= 0.27-2),
 libncurses-dev (= 6.5-2+b1),
 libncurses6 (= 6.5-2+b1),
 libncursesw6 (= 6.5-2+b1),
 libnettle8t64 (= 3.10-1+b1),
 libnghttp2-14 (= 1.64.0-1),
 libnghttp3-9 (= 1.6.0-2),
 libngtcp2-16 (= 1.9.1-1),
 libngtcp2-crypto-gnutls8 (= 1.9.1-1),
 libp11-kit0 (= 0.25.5-3),
 libpackage-deprecationmanager-perl (= 0.18-1),
 libpackage-stash-perl (= 0.40-1),
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 libpam0g (= 1.5.3-7+b1),
 libpango-1.0-0 (= 1.55.0+ds-3),
 libpangocairo-1.0-0 (= 1.55.0+ds-3),
 libpangoft2-1.0-0 (= 1.55.0+ds-3),
 libpaper-utils (= 2.2.5-0.3),
 libpaper2 (= 2.2.5-0.3),
 libparams-classify-perl (= 0.015-2+b4),
 libparams-util-perl (= 1.102-3+b1),
 libpcre2-16-0 (= 10.44-5),
 libpcre2-32-0 (= 10.44-5),
 libpcre2-8-0 (= 10.44-5),
 libpcre2-dev (= 10.44-5),
 libpcre2-posix3 (= 10.44-5),
 libperl5.40 (= 5.40.0-8),
 libpipeline1 (= 1.5.8-1),
 libpixman-1-0 (= 0.44.0-3),
 libpkgconf3 (= 1.8.1-4),
 libpng-dev (= 1.6.45-1),
 libpng16-16t64 (= 1.6.45-1),
 libproc2-0 (= 2:4.0.4-6),
 libpsl5t64 (= 0.21.2-1.1+b1),
 libquadmath0 (= 14.2.0-13),
 libreadline-dev (= 8.2-6),
 libreadline8t64 (= 8.2-6),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5),
 libsasl2-2 (= 2.1.28+dfsg1-8),
 libsasl2-modules-db (= 2.1.28+dfsg1-8),
 libseccomp2 (= 2.5.5-2),
 libselinux1 (= 3.7-3+b1),
 libsframe1 (= 2.43.50.20250108-1),
 libsharpyuv0 (= 1.5.0-0.1),
 libsm6 (= 2:1.2.4-1),
 libsmartcols1 (= 2.40.3-1),
 libssh2-1t64 (= 1.11.1-1),
 libssl3t64 (= 3.4.0-2),
 libstdc++-14-dev (= 14.2.0-13),
 libstdc++6 (= 14.2.0-13),
 libsub-exporter-perl (= 0.990-1),
 libsub-exporter-progressive-perl (= 0.001013-3),
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 libsub-install-perl (= 0.929-1),
 libsub-name-perl (= 0.28-1),
 libswitch-perl (= 2.17-3),
 libsystemd0 (= 257.2-1),
 libtasn1-6 (= 4.19.0-3+b3),
 libtcl8.6 (= 8.6.16+dfsg-1),
 libthai-data (= 0.1.29-2),
 libthai0 (= 0.1.29-2+b1),
 libtiff6 (= 4.5.1+git230720-5),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.5-2+b1),
 libtirpc-common (= 1.3.4+ds-1.3),
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 libtk8.6 (= 8.6.16-1),
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 libudev1 (= 257.2-1),
 libunistring5 (= 1.3-1),
 liburi-perl (= 5.30-1),
 libuuid1 (= 2.40.3-1),
 libvariable-magic-perl (= 0.64-1+b1),
 libwebp7 (= 1.5.0-0.1),
 libwww-curl-perl (= 4.17-11),
 libwww-curl-simple-perl (= 0.100191-3),
 libx11-6 (= 2:1.8.10-2),
 libx11-data (= 2:1.8.10-2),
 libxau6 (= 1:1.0.11-1),
 libxcb-render0 (= 1.17.0-2+b1),
 libxcb-shm0 (= 1.17.0-2+b1),
 libxcb1 (= 1.17.0-2+b1),
 libxdmcp6 (= 1:1.1.5-1),
 libxext6 (= 2:1.3.4-1+b3),
 libxft2 (= 2.3.6-1+b3),
 libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
 libxmuu1 (= 2:1.1.3-3+b4),
 libxrender1 (= 1:0.9.10-1.1+b3),
 libxss1 (= 1:1.2.3-1+b3),
 libxt6t64 (= 1:1.2.1-1.2+b2),
 libzstd1 (= 1.5.6+dfsg-2),
 linux-libc-dev (= 6.12.9-1),
 m4 (= 1.4.19-5),
 make (= 4.4.1-1),
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 mawk (= 1.3.4.20240905-1),
 ncurses-base (= 6.5-2),
 ncurses-bin (= 6.5-2+b1),
 openssl (= 3.4.0-2),
 openssl-provider-legacy (= 3.4.0-2),
 patch (= 2.7.6-7),
 perl (= 5.40.0-8),
 perl-base (= 5.40.0-8),
 perl-modules-5.40 (= 5.40.0-8),
 pkgconf (= 1.8.1-4),
 pkgconf-bin (= 1.8.1-4),
 po-debconf (= 1.0.21+nmu1),
 procps (= 2:4.0.4-6),
 r-base-core (= 4.4.2-1),
 r-base-dev (= 4.4.2-1),
 r-bioc-annotationdbi (= 1.68.0-2),
 r-bioc-biobase (= 2.66.0-2),
 r-bioc-biocgenerics (= 0.52.0-2),
 r-bioc-biocio (= 1.16.0+dfsg-2),
 r-bioc-biocparallel (= 1.40.0-2),
 r-bioc-biostrings (= 2.74.1+dfsg-2),
 r-bioc-bsgenome (= 1.74.0-2),
 r-bioc-delayedarray (= 0.32.0+dfsg-2),
 r-bioc-genomeinfodb (= 1.42.1+dfsg-2),
 r-bioc-genomeinfodbdata (= 1.2.13-2),
 r-bioc-genomicalignments (= 1.42.0-2),
 r-bioc-genomicfeatures (= 1.58.0+dfsg-2),
 r-bioc-genomicranges (= 1.58.0+dfsg-2),
 r-bioc-iranges (= 2.40.1-2),
 r-bioc-keggrest (= 1.46.0+dfsg-2),
 r-bioc-matrixgenerics (= 1.18.0-2),
 r-bioc-rhtslib (= 3.2.0+dfsg-2),
 r-bioc-rsamtools (= 2.22.0+dfsg-2),
 r-bioc-rtracklayer (= 1.66.0-2),
 r-bioc-s4arrays (= 1.6.0+dfsg-2),
 r-bioc-s4vectors (= 0.44.0+dfsg-2),
 r-bioc-sparsearray (= 1.6.0+dfsg-2),
 r-bioc-summarizedexperiment (= 1.36.0+dfsg-2),
 r-bioc-ucsc.utils (= 1.2.0+ds-2),
 r-bioc-variantannotation (= 1.52.0-2),
 r-bioc-xvector (= 0.46.0-2),
 r-bioc-zlibbioc (= 1.52.0+dfsg-2),
 r-cran-abind (= 1.4-8-1),
 r-cran-askpass (= 1.2.1-1),
 r-cran-bh (= 1.84.0-1),
 r-cran-bit (= 4.0.5-1),
 r-cran-bit64 (= 4.0.5-1),
 r-cran-bitops (= 1.0-8-1),
 r-cran-blob (= 1.2.4-1),
 r-cran-cachem (= 1.1.0-1),
 r-cran-cli (= 3.6.3-1),
 r-cran-codetools (= 0.2-20-1),
 r-cran-cpp11 (= 0.5.0-1),
 r-cran-crayon (= 1.5.2-1),
 r-cran-curl (= 5.2.3+dfsg-1),
 r-cran-dbi (= 1.2.3-1),
 r-cran-fastmap (= 1.2.0-1),
 r-cran-formatr (= 1.14-2),
 r-cran-futile.logger (= 1.4.3-4),
 r-cran-futile.options (= 1.0.1-3),
 r-cran-glue (= 1.8.0-1),
 r-cran-httr (= 1.4.7+dfsg-1),
 r-cran-jsonlite (= 1.8.9+dfsg-1),
 r-cran-lambda.r (= 1.2.4-2),
 r-cran-lattice (= 0.22-6-1),
 r-cran-lifecycle (= 1.0.4+dfsg-1),
 r-cran-matrix (= 1.7-1-1),
 r-cran-matrixstats (= 1.4.1-1),
 r-cran-memoise (= 2.0.1-1),
 r-cran-mime (= 0.12-2),
 r-cran-openssl (= 2.2.0+dfsg-1),
 r-cran-pkgconfig (= 2.0.3-2),
 r-cran-plogr (= 0.2.0-3),
 r-cran-png (= 0.1-8-1+b1),
 r-cran-r6 (= 2.5.1-1),
 r-cran-rcurl (= 1.98-1.16+dfsg-1),
 r-cran-restfulr (= 0.0.15-1),
 r-cran-rjson (= 0.2.23-1),
 r-cran-rlang (= 1.1.4-1),
 r-cran-rsqlite (= 2.3.7-2),
 r-cran-snow (= 1:0.4.4-2),
 r-cran-sys (= 3.4.3-1),
 r-cran-vctrs (= 0.6.5-1),
 r-cran-xml (= 3.99-0.18-1),
 r-cran-yaml (= 2.3.10-1),
 readline-common (= 8.2-6),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.24),
 sysvinit-utils (= 3.13-1),
 tar (= 1.35+dfsg-3.1),
 tzdata (= 2024b-5),
 ucf (= 3.0046),
 unzip (= 6.0-28),
 util-linux (= 2.40.3-1),
 x11-common (= 1:7.7+23.2),
 xauth (= 1:1.1.2-1.1),
 xdg-utils (= 1.2.1-2),
 xz-utils (= 5.6.3-1+b1),
 zip (= 3.0-14),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="parallel=6"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1736840694"


+------------------------------------------------------------------------------+
| Package contents                             Mon, 11 Aug 2025 15:56:01 +0000 |
+------------------------------------------------------------------------------+


r-bioc-genomicfiles_1.42.0+dfsg-2_all.deb
-----------------------------------------

 new Debian package, version 2.0.
 size 542352 bytes: control archive=2092 bytes.
     948 bytes,    15 lines      control
    4313 bytes,    47 lines      md5sums
 Package: r-bioc-genomicfiles
 Version: 1.42.0+dfsg-2
 Architecture: all
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 785
 Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-biocgenerics (>= 0.11.2), r-bioc-matrixgenerics, r-bioc-genomicranges (>= 1.31.16), r-bioc-summarizedexperiment, r-bioc-biocparallel (>= 1.1.0), r-bioc-rsamtools (>= 1.17.29), r-bioc-rtracklayer (>= 1.25.3), r-bioc-genomicalignments (>= 1.7.7), r-bioc-iranges, r-bioc-s4vectors (>= 0.9.25), r-bioc-variantannotation (>= 1.27.9), r-bioc-genomeinfodb
 Suggests: r-bioc-biostrings
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/GenomicFiles/
 Description: Distributed computing by file or by range
  This package provides infrastructure for parallel
  computations distributed 'by file' or 'by range'. User
  defined MAPPER and REDUCER functions provide added
  flexibility for data combination and manipulation.

drwxr-xr-x root/root         0 2025-01-14 07:44 ./
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drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/
-rw-r--r-- root/root      2308 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/DESCRIPTION
-rw-r--r-- root/root       774 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/INDEX
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/Meta/
-rw-r--r-- root/root      1133 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/Meta/Rd.rds
-rw-r--r-- root/root       123 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/Meta/features.rds
-rw-r--r-- root/root      1178 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/Meta/hsearch.rds
-rw-r--r-- root/root       771 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/Meta/links.rds
-rw-r--r-- root/root       634 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/Meta/nsInfo.rds
-rw-r--r-- root/root      1825 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/Meta/package.rds
-rw-r--r-- root/root       256 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/Meta/vignette.rds
-rw-r--r-- root/root      1788 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/NAMESPACE
-rw-r--r-- root/root      1849 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/NEWS
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/R/
-rw-r--r-- root/root      1058 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/R/GenomicFiles
-rw-r--r-- root/root    523898 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/R/GenomicFiles.rdb
-rw-r--r-- root/root      2112 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/R/GenomicFiles.rdx
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/doc/
-rw-r--r-- root/root      9418 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/doc/GenomicFiles.R
-rw-r--r-- root/root     25423 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/doc/GenomicFiles.Rmd
-rw-r--r-- root/root      1450 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/doc/index.html
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/
-rw-r--r-- root/root      1945 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_11.vcf.bgz
-rw-r--r-- root/root       149 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_11.vcf.bgz.tbi
-rw-r--r-- root/root     17634 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_20.vcf.bgz
-rw-r--r-- root/root      3647 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_20.vcf.bgz.tbi
-rw-r--r-- root/root     11309 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_21.vcf.bgz
-rw-r--r-- root/root      2011 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_21.vcf.bgz.tbi
-rw-r--r-- root/root     15484 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_22.vcf.bgz
-rw-r--r-- root/root      2509 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_22.vcf.bgz.tbi
-rw-r--r-- root/root      1943 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_7.vcf.bgz
-rw-r--r-- root/root       172 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_7.vcf.bgz.tbi
-rw-r--r-- root/root     12994 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_X.vcf.bgz
-rw-r--r-- root/root      3279 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_X.vcf.bgz.tbi
-rw-r--r-- root/root      2526 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_Y.vcf.bgz
-rw-r--r-- root/root       258 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/CEUtrio_Y.vcf.bgz.tbi
-rw-r--r-- root/root       332 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/extdata/seqinfo.rds
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/help/
-rw-r--r-- root/root      3153 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/help/AnIndex
-rw-r--r-- root/root     62410 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/help/GenomicFiles.rdb
-rw-r--r-- root/root       387 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/help/GenomicFiles.rdx
-rw-r--r-- root/root       759 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/help/aliases.rds
-rw-r--r-- root/root       245 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/help/paths.rds
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/html/
-rw-r--r-- root/root      8618 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/html/00Index.html
-rw-r--r-- root/root      1844 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/html/R.css
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/scripts/
-rw-r--r-- root/root      5184 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/scripts/methods-FileManager.R
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/unitTests/
-rw-r--r-- root/root       335 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/unitTests/test_GenomicFiles-class.R
-rw-r--r-- root/root      7849 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/unitTests/test_VcfStack-class.R
-rw-r--r-- root/root      2833 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/unitTests/test_pack-methods.R
-rw-r--r-- root/root      2008 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/unitTests/test_reduceByFile-methods.R
-rw-r--r-- root/root      1182 2025-01-14 07:44 ./usr/lib/R/site-library/GenomicFiles/unitTests/test_reduceByRange-methods.R
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/share/
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2025-01-14 07:44 ./usr/share/doc/r-bioc-genomicfiles/
-rw-r--r-- root/root       970 2025-01-14 07:44 ./usr/share/doc/r-bioc-genomicfiles/changelog.Debian.gz
-rw-r--r-- root/root      9803 2024-11-30 22:07 ./usr/share/doc/r-bioc-genomicfiles/copyright


+------------------------------------------------------------------------------+
| Post Build                                   Mon, 11 Aug 2025 15:56:03 +0000 |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                      Mon, 11 Aug 2025 15:56:03 +0000 |
+------------------------------------------------------------------------------+

Purging /build/reproducible-path
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                      Mon, 11 Aug 2025 15:56:13 +0000 |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: all
Build-Space: 2208
Build-Time: 35
Distribution: unstable
Host Architecture: amd64
Install-Time: 18
Job: /srv/rebuilderd/tmp/rebuilderdg2ojDx/inputs/r-bioc-genomicfiles_1.42.0+dfsg-2.dsc
Machine Architecture: amd64
Package: r-bioc-genomicfiles
Package-Time: 69
Source-Version: 1.42.0+dfsg-2
Space: 2208
Status: successful
Version: 1.42.0+dfsg-2
--------------------------------------------------------------------------------
Finished at 2025-08-11T15:56:00Z
Build needed 00:01:09, 2208k disk space
build artifacts stored in /srv/rebuilderd/tmp/rebuilderdg2ojDx/out
size differs for r-bioc-genomicfiles_1.42.0+dfsg-2_all.deb
checking r-bioc-genomicfiles_1.42.0+dfsg-2_all.deb: