--- /srv/rebuilderd/tmp/rebuilderd1D3znx/inputs/r-bioc-ioniser_2.30.0+dfsg-2_all.deb
+++ /srv/rebuilderd/tmp/rebuilderd1D3znx/out/r-bioc-ioniser_2.30.0+dfsg-2_all.deb
├── file list
│ @@ -1,3 +1,3 @@
│  -rw-r--r--   0        0        0        4 2025-01-13 20:27:09.000000 debian-binary
│ --rw-r--r--   0        0        0     1720 2025-01-13 20:27:09.000000 control.tar.xz
│ --rw-r--r--   0        0        0  1137648 2025-01-13 20:27:09.000000 data.tar.xz
│ +-rw-r--r--   0        0        0     1708 2025-01-13 20:27:09.000000 control.tar.xz
│ +-rw-r--r--   0        0        0  1137588 2025-01-13 20:27:09.000000 data.tar.xz
├── control.tar.xz
│ ├── control.tar
│ │ ├── file list
│ │ │ @@ -1,3 +1,3 @@
│ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2025-01-13 20:27:09.000000 ./
│ │ │ --rw-r--r--   0 root         (0) root         (0)     1060 2025-01-13 20:27:09.000000 ./control
│ │ │ +-rw-r--r--   0 root         (0) root         (0)     1025 2025-01-13 20:27:09.000000 ./control
│ │ │  -rw-r--r--   0 root         (0) root         (0)     2411 2025-01-13 20:27:09.000000 ./md5sums
│ │ ├── ./control
│ │ │ @@ -1,14 +1,14 @@
│ │ │  Package: r-bioc-ioniser
│ │ │  Version: 2.30.0+dfsg-2
│ │ │  Architecture: all
│ │ │  Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
│ │ │  Installed-Size: 2095
│ │ │  Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr
│ │ │ -Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-gridextra, r-cran-testthat
│ │ │ +Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown
│ │ │  Section: gnu-r
│ │ │  Priority: optional
│ │ │  Homepage: https://bioconductor.org/packages/IONiseR/
│ │ │  Description: Quality Assessment Tools for Oxford Nanopore MinION data
│ │ │   IONiseR provides tools for the quality assessment of
│ │ │   Oxford Nanopore MinION data. It extracts summary statistics
│ │ │   from a set of fast5 files and can be used either before or
│ │ ├── ./md5sums
│ │ │ ├── ./md5sums
│ │ │ │┄ Files differ
├── data.tar.xz
│ ├── data.tar
│ │ ├── file list
│ │ │ @@ -19,15 +19,15 @@
│ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/R/
│ │ │  -rw-r--r--   0 root         (0) root         (0)     1058 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/R/IONiseR
│ │ │  -rw-r--r--   0 root         (0) root         (0)   432390 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/R/IONiseR.rdb
│ │ │  -rw-r--r--   0 root         (0) root         (0)     1943 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/R/IONiseR.rdx
│ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/doc/
│ │ │  -rw-r--r--   0 root         (0) root         (0)     3887 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/doc/IONiseR.R
│ │ │  -rw-r--r--   0 root         (0) root         (0)    16550 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/doc/IONiseR.Rmd
│ │ │ --rw-r--r--   0 root         (0) root         (0)    33173 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/doc/IONiseR.html
│ │ │ +-rw-r--r--   0 root         (0) root         (0)    33170 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/doc/IONiseR.html
│ │ │  -rw-r--r--   0 root         (0) root         (0)     1409 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/doc/index.html
│ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/extdata/
│ │ │  -rw-r--r--   0 root         (0) root         (0)   628027 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/extdata/example.fast5
│ │ │  -rw-r--r--   0 root         (0) root         (0)    25636 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/extdata/example_not-working.fast5
│ │ │  -rw-r--r--   0 root         (0) root         (0)   899903 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/extdata/example_v2.fast5
│ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/help/
│ │ │  -rw-r--r--   0 root         (0) root         (0)     1256 2025-01-13 20:27:09.000000 ./usr/lib/R/site-library/IONiseR/help/AnIndex
│ │ ├── ./usr/lib/R/site-library/IONiseR/doc/IONiseR.html
│ │ │ @@ -138,15 +138,15 @@
│ │ │  }
│ │ │  </style>
│ │ │  </head>
│ │ │  <body>
│ │ │  <div class="frontmatter">
│ │ │  <div class="title"><h1>IONiseR</h1></div>
│ │ │  <div class="author"><h2>Mike L. Smith</h2></div>
│ │ │ -<div class="date"><h3>13 January 2025</h3></div>
│ │ │ +<div class="date"><h3>15 July 2025</h3></div>
│ │ │  </div>
│ │ │  <div class="body">
│ │ │  <script type="text/javascript">
│ │ │  document.addEventListener("DOMContentLoaded", function() {
│ │ │    document.querySelector("h1").className = "title";
│ │ │  });
│ │ │  </script>
│ │ │ ├── html2text {}
│ │ │ │ @@ -1,10 +1,10 @@
│ │ │ │  ************ IIOONNiisseeRR ************
│ │ │ │  ********** MMiikkee LL.. SSmmiitthh **********
│ │ │ │ -******** 1133 JJaannuuaarryy 22002255 ********
│ │ │ │ +******** 1155 JJuullyy 22002255 ********
│ │ │ │  ************ IInnttrroodduuccttiioonn ************
│ │ │ │  This package is intended to provide tools for the quality assessment of data
│ │ │ │  produced by Oxford Nanopore’s MinION sequencer. It includes a functions to
│ │ │ │  generate a number plots for examining the statistics that we think will be
│ │ │ │  useful for this task.
│ │ │ │  However, nanopore sequencing is an emerging and rapidly developing technology.
│ │ │ │  It is not clear what will be most informative. We hope that IONiseR will