=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdmNXBfa/inputs/mdanalysis_2.9.0-12_all.buildinfo Source: mdanalysis Version: 2.9.0-12 rebuilderd-worker node: ionos17-amd64 +------------------------------------------------------------------------------+ | Downloading sources Wed, 30 Jul 2025 21:33:23 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [168 kB] Get:2 https://deb.debian.org/debian sid InRelease [213 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 3s (7503 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mdanalysis/mdanalysis_2.9.0-12.dsc' mdanalysis_2.9.0-12.dsc 2945 SHA256:89347e2d211cadec312bbcdfccfc12f7f5863f3b68c326868c9905a8161122e6 'https://deb.debian.org/debian/pool/main/m/mdanalysis/mdanalysis_2.9.0.orig.tar.gz' mdanalysis_2.9.0.orig.tar.gz 61025537 SHA256:216c62feeaa75b810c5f6d539243d90ddea866ac06dbf73e38f8a864bfb4fb7d 'https://deb.debian.org/debian/pool/main/m/mdanalysis/mdanalysis_2.9.0-12.debian.tar.xz' mdanalysis_2.9.0-12.debian.tar.xz 13888 SHA256:009904701eef5802492559d4293454a4c32f7b170c91243454409f6aaeffd701 216c62feeaa75b810c5f6d539243d90ddea866ac06dbf73e38f8a864bfb4fb7d mdanalysis_2.9.0.orig.tar.gz 009904701eef5802492559d4293454a4c32f7b170c91243454409f6aaeffd701 mdanalysis_2.9.0-12.debian.tar.xz 89347e2d211cadec312bbcdfccfc12f7f5863f3b68c326868c9905a8161122e6 mdanalysis_2.9.0-12.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Wed, 30 Jul 2025 21:33:27 +0000 | +------------------------------------------------------------------------------+ Rebuilding mdanalysis=2.9.0-12 in /srv/rebuilderd/tmp/rebuilderdmNXBfa/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdmNXBfa/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdmNXBfa/inputs/mdanalysis_2.9.0-12_all.buildinfo /srv/rebuilderd/tmp/rebuilderdmNXBfa/inputs/mdanalysis_2.9.0-12_all.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mdanalysis-2.9.0 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid InRelease [213 kB] Get:2 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 Packages [10.1 MB] Fetched 10.3 MB in 1s (7969 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250711T083501Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Fetched 52.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptu87qa34/libyaml-0-2_0.2.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Fetched 75.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6dtcxgfl/libgdbm6t64_1.24-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Fetched 57.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptz9425l8/libpsl5t64_0.21.2-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libexpat1-dev amd64 2.7.1-1 [161 kB] Fetched 161 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzs1zf8u2/libexpat1-dev_2.7.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Fetched 343 kB in 0s (0 B/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.12-1_all.deb' to '/srv/rebuilderd/tmp/tmpa42u_1uh/libx11-data_1.8.12-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libisl23 amd64 0.27-1 [659 kB] Fetched 659 kB in 0s (27.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo4i0zr0s/libisl23_0.27-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 m4 amd64 1.4.19-8 [294 kB] Fetched 294 kB in 0s (26.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2n8pfafb/m4_1.4.19-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Fetched 5984 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv41ip5nu/blt_2.5.3+dfsg-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Fetched 815 kB in 0s (53.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsfq45s2b/tar_1.35+dfsg-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 base-files amd64 13.8 [73.2 kB] Fetched 73.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr5o8ecwo/base-files_13.8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Fetched 10.2 kB in 0s (1010 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpajgpq2ls/libpython3-stdlib_3.13.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Fetched 346 kB in 0s (32.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxrxlcp7b/libtiff6_4.7.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Fetched 1956 kB in 0s (80.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzdh3etvl/libpython3.13-stdlib_3.13.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Fetched 326 kB in 0s (28.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuonygakb/libkrb5-3_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps97yj7tl/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcom-err2 amd64 1.47.2-3+b1 [25.0 kB] Fetched 25.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpff048ugm/libcom-err2_1.47.2-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Fetched 28.2 kB in 0s (414 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzye7f3mm/python3_3.13.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (38.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpog1r2bas/libdpkg-perl_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Fetched 27.9 kB in 0s (162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5oil5i75/python3-alabaster_0.7.16-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (1972 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxpdhfvqj/gzip_1.13-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Fetched 87.5 kB in 0s (8340 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpadv01inf/libjson-perl_4.10000-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Fetched 12.1 MB in 0s (66.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4izmg6sf/g++-14-x86-64-linux-gnu_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 binutils amd64 2.44-3 [265 kB] Fetched 265 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpakyfc2xq/binutils_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcc1-0 amd64 14.2.0-19 [42.8 kB] Fetched 42.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2ukiveu/libcc1-0_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-filelock all 3.18.0-1 [12.8 kB] Fetched 12.8 kB in 0s (717 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwm6n21aq/python3-filelock_3.18.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Fetched 81.6 kB in 0s (6925 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxky48sz3/python3-pil.imagetk_11.1.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Fetched 57.5 kB in 0s (720 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoyqdl39a/libsasl2-2_2.1.28+dfsg1-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpslwnkiod/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Fetched 243 kB in 0s (2888 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2_v6gglx/gettext-base_0.23.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 dpkg amd64 1.22.21 [1538 kB] Fetched 1538 kB in 0s (8640 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa9qu46ux/dpkg_1.22.21_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 sensible-utils all 0.0.25 [25.0 kB] Fetched 25.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptt7q4984/sensible-utils_0.0.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc3xfwr4b/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libctf-nobfd0 amd64 2.44-3 [156 kB] Fetched 156 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp93tqrr8n/libctf-nobfd0_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-all-dev amd64 3.13.5-1 [1068 B] Fetched 1068 B in 0s (2667 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaatsds4n/python3-all-dev_3.13.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Fetched 1436 B in 0s (4669 B/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpvp7zvlep/gcc-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Fetched 52.2 kB in 0s (603 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqwnoo3sc/libmpc3_1.3.1-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 man-db amd64 2.13.1-1 [1469 kB] Fetched 1469 kB in 0s (4175 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2cnif5o5/man-db_2.13.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Fetched 10.9 kB in 0s (871 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9h25n29a/sgml-base_1.31+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (3029 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvs9noq2b/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 xz-utils amd64 5.8.1-1 [660 kB] Fetched 660 kB in 0s (8080 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpffuiy9du/xz-utils_5.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Fetched 2780 kB in 0s (140 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpunyaqbwf/fonts-lato_2.015-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Fetched 27.2 kB in 0s (2485 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqrwho5xx/python3-minimal_3.13.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 binutils-common amd64 2.44-3 [2509 kB] Fetched 2509 kB in 0s (28.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyz_7e14s/binutils-common_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Fetched 392 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv31w5xac/libfontconfig1_2.15.0-2.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmumxe2ie/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Fetched 8080 B in 0s (310 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8yu0urhi/libsz2_1.1.3-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (428 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcfv3mnaf/build-essential_12.12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libsmartcols1 amd64 2.41-5 [143 kB] Fetched 143 kB in 1s (243 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkha3xmn8/libsmartcols1_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Fetched 128 kB in 0s (1020 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeoddyzbz/docutils-common_0.21.2+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbe2f7q5g/libexpat1_2.7.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr0l6zhsz/bzip2_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Fetched 69.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp02cqc_e7/python3-attr_25.3.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Fetched 50.4 kB in 0s (734 kB/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmpwgd6tgmd/libxext6_1.3.4-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 base-passwd amd64 3.6.7 [53.7 kB] Fetched 53.7 kB in 0s (341 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xzrb71f/base-passwd_3.6.7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Fetched 67.7 kB in 0s (6122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpscz0vclb/libnghttp3-9_1.8.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libssl3t64 amd64 3.5.0-2 [2433 kB] Fetched 2433 kB in 0s (142 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg4wpwqt6/libssl3t64_3.5.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 findutils amd64 4.10.0-3 [700 kB] Fetched 700 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf5o3g5dd/findutils_4.10.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_xm_5q9f/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Fetched 2504 kB in 0s (29.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpge6ed79e/cython3_3.0.11+dfsg-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Fetched 2725 kB in 0s (38.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvozk2pc/libasan8_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Fetched 54.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9sq6pb5b/libxft2_2.3.6-1+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libudev1 amd64 257.7-1 [152 kB] Fetched 152 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9zw84se/libudev1_257.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Fetched 836 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68peya_j/python3-pygments_2.18.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgprofng0 amd64 2.44-3 [808 kB] Fetched 808 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6826am87/libgprofng0_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Fetched 245 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4orxkrdv/libssh2-1t64_1.11.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Fetched 320 kB in 0s (5184 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps4ln0q_z/python3-brotli_1.1.0-2+b7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Fetched 82.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzla5qep4/libgpg-error0_1.51-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Fetched 30.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5u9_oyox/libjs-sphinxdoc_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-build all 1.2.2-2 [36.1 kB] Fetched 36.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7_byr7xw/python3-build_1.2.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Fetched 10.8 MB in 0s (113 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy55drdat/fonts-urw-base35_20200910-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 xml-core all 0.19 [20.1 kB] Fetched 20.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl0nzg6yt/xml-core_0.19_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-roman all 5.0-1 [10.6 kB] Fetched 10.6 kB in 0s (174 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsptt3ikt/python3-roman_5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libglib2.0-0t64 amd64 2.84.3-1 [1515 kB] Fetched 1515 kB in 0s (116 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprf4o_ujl/libglib2.0-0t64_2.84.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libctf0 amd64 2.44-3 [88.6 kB] Fetched 88.6 kB in 0s (1500 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp276f1t93/libctf0_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Fetched 2460 kB in 0s (143 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9dixwhmg/libtsan2_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Fetched 318 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx5gjhrl2/fontconfig-config_2.15.0-2.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Fetched 160 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0vobwxf/liblcms2-2_2.16-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-h5py-serial amd64 3.13.0-1+b1 [1065 kB] Fetched 1065 kB in 0s (17.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx17u5ma3/python3-h5py-serial_3.13.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Fetched 517 kB in 0s (9101 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpst85i_f1/fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Fetched 11.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2m478b4k/pybuild-plugin-pyproject_6.20250414_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Fetched 4840 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpl5h07nes/cpp-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Fetched 273 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprjqiouna/w3c-sgml-lib_1.3-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Fetched 62.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe1z2c107/python3-kiwisolver_1.4.7-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libmount1 amd64 2.41-5 [209 kB] Fetched 209 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0txwx7fd/libmount1_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Fetched 2376 kB in 0s (159 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvjf3lhms/libstdc++-14-dev_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 bash amd64 5.2.37-2+b3 [1502 kB] Fetched 1502 kB in 0s (98.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph24a_t7l/bash_5.2.37-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Fetched 26.9 kB in 0s (2385 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp388f7vy_/python3-pluggy_1.5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Fetched 1280 B in 0s (26.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsx7b1z2u/cpp-14_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sphinxcontrib.bibtex all 2.6.2-1 [32.4 kB] Fetched 32.4 kB in 0s (681 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw413zs4g/python3-sphinxcontrib.bibtex_2.6.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Fetched 391 kB in 0s (7738 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp06gqwc35/libcurl4t64_8.14.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Fetched 3097 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv60a39vb/python3-pandas_2.2.3+dfsg-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pybtex all 0.24.0-4 [74.6 kB] Fetched 74.6 kB in 0s (1506 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppfbgl4a4/python3-pybtex_0.24.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpython3.13-dev amd64 3.13.5-2 [5291 kB] Fetched 5291 kB in 0s (171 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj9szjyse/libpython3.13-dev_3.13.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 dh-python all 6.20250414 [116 kB] Fetched 116 kB in 0s (2347 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6t061raj/dh-python_6.20250414_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Fetched 183 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqzvpzhcn/liblerc4_4.0.0+ds-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Fetched 93.3 kB in 0s (0 B/s) dpkg-name: info: moved 'xfonts-utils_1%3a7.7+7_amd64.deb' to '/srv/rebuilderd/tmp/tmpy37c26wl/xfonts-utils_7.7+7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Fetched 47.3 kB in 0s (4471 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1juefoa9/libdeflate0_1.23-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB] Fetched 1438 kB in 0s (32.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0pjt82e9/python3-fonttools_4.57.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Fetched 107 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp96x68nbl/python3-jinja2_3.1.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Fetched 29.7 kB in 0s (595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0xazd0l4/python3-sphinx-rtd-theme_3.0.2+dfsg-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpopmrwka7/libacl1_2.3.2-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpva5pie2d/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-msgpack amd64 1.0.3-3+b4 [84.5 kB] Fetched 84.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk4eh5tm1/python3-msgpack_1.0.3-3+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q6zazc4/dwz_0.15-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-griddataformats all 1.0.2-2 [2048 kB] Fetched 2048 kB in 0s (122 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr9l32c78/python3-griddataformats_1.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Fetched 250 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1s6_f19/libjs-jquery-ui_1.13.2+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-mda-xdrlib all 0.2.0-3 [11.6 kB] Fetched 11.6 kB in 0s (244 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphiojgl_1/python3-mda-xdrlib_0.2.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwfikn6pk/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Fetched 714 kB in 0s (70.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsdg1qqmj/libstdc++6_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Fetched 21.4 MB in 0s (135 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp06z7we_q/gcc-14-x86-64-linux-gnu_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Fetched 88.9 kB in 0s (1618 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpbkwvrk8x/zlib1g_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Fetched 1344 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_c_zxja_/libhdf5-310_1.14.5+repack-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Fetched 2452 kB in 0s (129 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwlxabf57/liblapack3_3.12.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB] Fetched 34.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpej40v6qk/sysvinit-utils_3.14-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Fetched 25.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpegj9ni2q/python3-lz4_4.4.0+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Fetched 137 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4ir8uqt/libgomp1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (483 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ribpy9y/python3-inflect_7.3.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Fetched 513 kB in 0s (47.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzvodhzli/python3-pil_11.1.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Fetched 116 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkpq3tdoe/libsharpyuv0_1.5.0-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libunistring5 amd64 1.3-2 [477 kB] Fetched 477 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptuq9uo6x/libunistring5_1.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (789 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl37tl5zq/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libc-bin amd64 2.41-9 [636 kB] Fetched 636 kB in 0s (57.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpolhp7il_/libc-bin_2.41-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpython3.13 amd64 3.13.5-2 [2160 kB] Fetched 2160 kB in 0s (123 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx8n0kc72/libpython3.13_3.13.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Fetched 90.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_oy92qq6/python3-typing-extensions_4.13.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB] Fetched 282 kB in 0s (7186 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxex0x0kl/libpng16-16t64_1.6.48-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libbinutils amd64 2.44-3 [534 kB] Fetched 534 kB in 0s (49.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwjietf5j/libbinutils_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 make amd64 4.4.1-2 [463 kB] Fetched 463 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7rcodyq/make_4.4.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Fetched 114 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprntmzqr5/python3-cairo_1.27.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Fetched 13.0 MB in 0s (135 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2zlrjaa_/python3-networkx_3.2.1-5_all.deb' Downloading dependency 1 of 385: libyaml-0-2:amd64=0.2.5-2 Downloading dependency 2 of 385: libgdbm6t64:amd64=1.24-2 Downloading dependency 3 of 385: libpsl5t64:amd64=0.21.2-1.1+b1 Downloading dependency 4 of 385: libexpat1-dev:amd64=2.7.1-1 Downloading dependency 5 of 385: libx11-data:amd64=2:1.8.12-1 Downloading dependency 6 of 385: libisl23:amd64=0.27-1 Downloading dependency 7 of 385: m4:amd64=1.4.19-8 Downloading dependency 8 of 385: blt:amd64=2.5.3+dfsg-8 Downloading dependency 9 of 385: tar:amd64=1.35+dfsg-3.1 Downloading dependency 10 of 385: base-files:amd64=13.8 Downloading dependency 11 of 385: libpython3-stdlib:amd64=3.13.5-1 Downloading dependency 12 of 385: libtiff6:amd64=4.7.0-3 Downloading dependency 13 of 385: libpython3.13-stdlib:amd64=3.13.5-2 Downloading dependency 14 of 385: libkrb5-3:amd64=1.21.3-5 Downloading dependency 15 of 385: debconf:amd64=1.5.91 Downloading dependency 16 of 385: libcom-err2:amd64=1.47.2-3+b1 Downloading dependency 17 of 385: python3:amd64=3.13.5-1 Downloading dependency 18 of 385: libdpkg-perl:amd64=1.22.21 Downloading dependency 19 of 385: python3-alabaster:amd64=0.7.16-0.1 Downloading dependency 20 of 385: gzip:amd64=1.13-1 Downloading dependency 21 of 385: libjson-perl:amd64=4.10000-1 Downloading dependency 22 of 385: g++-14-x86-64-linux-gnu:amd64=14.2.0-19 Downloading dependency 23 of 385: binutils:amd64=2.44-3 Downloading dependency 24 of 385: libcc1-0:amd64=14.2.0-19 Downloading dependency 25 of 385: python3-filelock:amd64=3.18.0-1 Downloading dependency 26 of 385: python3-pil.imagetk:amd64=11.1.0-5+b1 Downloading dependency 27 of 385: libsasl2-2:amd64=2.1.28+dfsg1-9 Downloading dependency 28 of 385: libpam-runtime:amd64=1.7.0-5 Downloading dependency 29 of 385: gettext-base:amd64=0.23.1-2 Downloading dependency 30 of 385: dpkg:amd64=1.22.21 Downloading dependency 31 of 385: sensible-utils:amd64=0.0.25 Downloading dependency 32 of 385: libjs-jquery:amd64=3.6.1+dfsg+~3.5.14-1 Downloading dependency 33 of 385: libctf-nobfd0:amd64=2.44-3 Downloading dependency 34 of 385: python3-all-dev:amd64=3.13.5-1 Downloading dependency 35 of 385: gcc-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 36 of 385: libmpc3:amd64=1.3.1-1+b3 Downloading dependency 37 of 385: man-db:amd64=2.13.1-1 Downloading dependency 38 of 385: sgml-base:amd64=1.31+nmu1 Downloading dependency 39 of 385: python3-pkg-resources:amd64=78.1.1-0.1 Downloading dependency 40 of 385: xz-utils:amd64=5.8.1-1 Downloading dependency 41 of 385: fonts-lato:amd64=2.015-1 Downloading dependency 42 of 385: python3-minimal:amd64=3.13.5-1 Downloading dependency 43 of 385: binutils-common:amd64=2.44-3 Downloading dependency 44 of 385: libfontconfig1:amd64=2.15.0-2.3 Downloading dependency 45 of 385: libfile-stripnondeterminism-perl:amd64=1.14.1-2 Downloading dependency 46 of 385: libsz2:amd64=1.1.3-1+b1 Downloading dependency 47 of 385: build-essential:amd64=12.12 Downloading dependency 48 of 385: libsmartcols1:amd64=2.41-5 Downloading dependency 49 of 385: docutils-common:amd64=0.21.2+dfsg-2 Downloading dependency 50 of 385: libexpat1:amd64=2.7.1-1 Downloading dependency 51 of 385: bzip2:amd64=1.0.8-6 Downloading dependency 52 of 385: python3-attr:amd64=25.3.0-1 Downloading dependency 53 of 385: libxext6:amd64=2:1.3.4-1+b3 Downloading dependency 54 of 385: base-passwd:amd64=3.6.7 Downloading dependency 55 of 385: libnghttp3-9:amd64=1.8.0-1 Downloading dependency 56 of 385: libssl3t64:amd64=3.5.0-2 Downloading dependency 57 of 385: findutils:amd64=4.10.0-3 Downloading dependency 58 of 385: autoconf:amd64=2.72-3.1 Downloading dependency 59 of 385: cython3:amd64=3.0.11+dfsg-2+b1 Downloading dependency 60 of 385: libasan8:amd64=14.2.0-19 Downloading dependency 61 of 385: libxft2:amd64=2.3.6-1+b4 Downloading dependency 62 of 385: libudev1:amd64=257.7-1 Downloading dependency 63 of 385: python3-pygments:amd64=2.18.0+dfsg-2 Downloading dependency 64 of 385: libgprofng0:amd64=2.44-3 Downloading dependency 65 of 385: libssh2-1t64:amd64=1.11.1-1 Downloading dependency 66 of 385: python3-brotli:amd64=1.1.0-2+b7 Downloading dependency 67 of 385: libgpg-error0:amd64=1.51-4 Downloading dependency 68 of 385: libjs-sphinxdoc:amd64=8.1.3-5 Downloading dependency 69 of 385: python3-build:amd64=1.2.2-2 Downloading dependency 70 of 385: fonts-urw-base35:amd64=20200910-8 Downloading dependency 71 of 385: xml-core:amd64=0.19 Downloading dependency 72 of 385: python3-roman:amd64=5.0-1 Downloading dependency 73 of 385: libglib2.0-0t64:amd64=2.84.3-1 Downloading dependency 74 of 385: libctf0:amd64=2.44-3 Downloading dependency 75 of 385: libtsan2:amd64=14.2.0-19 Downloading dependency 76 of 385: fontconfig-config:amd64=2.15.0-2.3 Downloading dependency 77 of 385: liblcms2-2:amd64=2.16-2 Downloading dependency 78 of 385: python3-h5py-serial:amd64=3.13.0-1+b1 Downloading dependency 79 of 385: fonts-font-awesome:amd64=5.0.10+really4.7.0~dfsg-4.1 Downloading dependency 80 of 385: pybuild-plugin-pyproject:amd64=6.20250414 Downloading dependency 81 of 385: cpp-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 82 of 385: w3c-sgml-lib:amd64=1.3-3 Downloading dependency 83 of 385: python3-kiwisolver:amd64=1.4.7-3+b1 Downloading dependency 84 of 385: libmount1:amd64=2.41-5 Downloading dependency 85 of 385: libstdc++-14-dev:amd64=14.2.0-19 Downloading dependency 86 of 385: bash:amd64=5.2.37-2+b3 Downloading dependency 87 of 385: python3-pluggy:amd64=1.5.0-1 Downloading dependency 88 of 385: cpp-14:amd64=14.2.0-19 Downloading dependency 89 of 385: python3-sphinxcontrib.bibtex:amd64=2.6.2-1 Downloading dependency 90 of 385: libcurl4t64:amd64=8.14.1-2 Downloading dependency 91 of 385: python3-pandas:amd64=2.2.3+dfsg-9 Downloading dependency 92 of 385: python3-pybtex:amd64=0.24.0-4 Downloading dependency 93 of 385: libpython3.13-dev:amd64=3.13.5-2 Downloading dependency 94 of 385: dh-python:amd64=6.20250414 Downloading dependency 95 of 385: liblerc4:amd64=4.0.0+ds-5 Downloading dependency 96 of 385: xfonts-utils:amd64=1:7.7+7 Downloading dependency 97 of 385: libdeflate0:amd64=1.23-2 Downloading dependency 98 of 385: python3-fonttools:amd64=4.57.0-1 Downloading dependency 99 of 385: python3-jinja2:amd64=3.1.6-1 Downloading dependency 100 of 385: python3-sphinx-rtd-theme:amd64=3.0.2+dfsg-3 Downloading dependency 101 of 385: libacl1:amd64=2.3.2-2+b1 Downloading dependency 102 of 385: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 103 of 385: python3-msgpack:amd64=1.0.3-3+b4 Downloading dependency 104 of 385: dwz:amd64=0.15-1+b1 Downloading dependency 105 of 385: python3-griddataformats:amd64=1.0.2-2 Downloading dependency 106 of 385: libjs-jquery-ui:amd64=1.13.2+dfsg-1 Downloading dependency 107 of 385: python3-mda-xdrlib:amd64=0.2.0-3 Downloading dependency 108 of 385: ncurses-base:amd64=6.5+20250216-2 Downloading dependency 109 of 385: libstdc++6:amd64=14.2.0-19 Downloading dependency 110 of 385: gcc-14-x86-64-linux-gnu:amd64=14.2.0-19 Downloading dependency 111 of 385: zlib1g:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 112 of 385: libhdf5-310:amd64=1.14.5+repack-3 Downloading dependency 113 of 385: liblapack3:amd64=3.12.1-2 Downloading dependency 114 of 385: sysvinit-utils:amd64=3.14-4 Downloading dependency 115 of 385: python3-lz4:amd64=4.4.0+dfsg-2 Downloading dependency 116 of 385: libgomp1:amd64=14.2.0-19 Downloading dependency 117 of 385: python3-inflect:amd64=7.3.1-2 Downloading dependency 118 of 385: python3-pil:amd64=11.1.0-5+b1 Downloading dependency 119 of 385: libsharpyuv0:amd64=1.5.0-0.1 Downloading dependency 120 of 385: libunistring5:amd64=1.3-2 Downloading dependency 121 of 385: init-system-helpers:amd64=1.68 Downloading dependency 122 of 385: libc-bin:amd64=2.41-9 Downloading dependency 123 of 385: libpython3.13:amd64=3.13.5-2 Downloading dependency 124 of 385: python3-typing-extensions:amd64=4.13.2-1 Downloading dependency 125 of 385: libpng16-16t64:amd64=1.6.48-1 Downloading dependency 126 of 385: libbinutils:amd64=2.44-3 Downloading dependency 127 of 385: make:amd64=4.4.1-2 Downloading dependency 128 of 385: python3-cairo:amd64=1.27.0-2 Downloading dependency 129 of 385: python3-networkx:amd64=3.2.1-5 Downloading dependency 130 of 385: dpkg-dev:amd64=1.22.21Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (3544 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqj2ybn3x/dpkg-dev_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 grep amd64 3.11-4 [431 kB] Fetched 431 kB in 0s (2893 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2r7dzx65/grep_3.11-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-mrcfile all 1.5.4-2 [118 kB] Fetched 118 kB in 0s (1858 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwjp6f_dq/python3-mrcfile_1.5.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Fetched 190 kB in 0s (4333 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1gnrj_95/fonts-lyx_2.4.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Fetched 33.0 kB in 0s (3189 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8tsqehnb/python3-ufolib2_0.17.1+dfsg1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 perl amd64 5.40.1-5 [267 kB] Fetched 267 kB in 0s (23.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_exwbqe/perl_5.40.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmswhhm7w/python3-chardet_5.2.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Fetched 19.8 kB in 0s (410 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4ozg3xz/libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptkrw15b5/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Fetched 58.0 kB in 0s (5322 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7f8a7cfk/python3-snowballstemmer_2.2.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 tzdata all 2025b-4 [260 kB] Fetched 260 kB in 0s (5244 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpauimvtyx/tzdata_2025b-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Fetched 50.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxl57gms1/libgdbm-compat4t64_1.24-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [3980 kB] Fetched 3980 kB in 0s (180 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68d3qdfc/python3-sklearn-lib_1.4.2+dfsg-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Fetched 8547 kB in 0s (61.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yzx1mqn/unicode-data_15.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Fetched 23.3 kB in 0s (1129 kB/s) dpkg-name: info: moved 'libfontenc1_1%3a1.1.8-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp5lcdn8o9/libfontenc1_1.1.8-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 liblastlog2-2 amd64 2.41-5 [28.5 kB] Fetched 28.5 kB in 0s (244 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj01x915g/liblastlog2-2_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Fetched 1023 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptnyino4v/sphinx-rtd-theme-common_3.0.2+dfsg-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 linux-libc-dev all 6.12.35-1 [2617 kB] Fetched 2617 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2lwcvva6/linux-libc-dev_6.12.35-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-gsd amd64 3.4.2-2+b1 [209 kB] Fetched 209 kB in 0s (5049 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw0gtg_8j/python3-gsd_3.4.2-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-seaborn all 0.13.2-5 [215 kB] Fetched 215 kB in 0s (5307 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6fep74ij/python3-seaborn_0.13.2-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Fetched 136 kB in 0s (2204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphghmzywg/python3-yaml_6.0.2-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (60.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp27ogoa9d/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Fetched 591 kB in 0s (9229 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq_9_2_k4/tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (44.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw_j_wovo/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-scipy amd64 1.15.3-1 [16.3 MB] Fetched 16.3 MB in 0s (62.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3cvwkk9x/python3-scipy_1.15.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Fetched 69.3 kB in 0s (195 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp30c61cu_/libhdf5-hl-310_1.14.5+repack-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Fetched 22.5 kB in 0s (464 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpep5t2egm/g++-14_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Fetched 840 kB in 0s (77.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ld1z6l6/fonts-dejavu-core_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Fetched 1187 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpesux6jf3/groff-base_1.23.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Fetched 10.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe87aeag_/liblzf1_3.6-4+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Fetched 862 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjcn95ugn/libpython3.13-minimal_3.13.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Fetched 5096 kB in 0s (210 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.2.4+ds-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp5jrms6ka/python3-numpy_2.2.4+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-tk amd64 3.13.4-1 [9572 B] Fetched 9572 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1zmkc_zd/python3-tk_3.13.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Fetched 42.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl81y4auv/python3-idna_3.10-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Fetched 9456 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_f8qg72x/libkeyutils1_1.6.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 diffutils amd64 1:3.10-4 [387 kB] Fetched 387 kB in 0s (38.2 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpby8cmj7l/diffutils_3.10-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-looseversion all 1.3.0-3 [8964 B] Fetched 8964 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpicqpix47/python3-looseversion_1.3.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Fetched 21.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68wgysi7/python3-wheel_0.46.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3.13-tk amd64 3.13.5-2 [108 kB] Fetched 108 kB in 0s (731 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg2831ufe/python3.13-tk_3.13.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Fetched 793 kB in 0s (6632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfogdaxcq/libtk8.6_8.6.16-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Fetched 189 kB in 0s (4802 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphuykjjjk/libelf1t64_0.192-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 openssl amd64 3.5.0-2 [1490 kB] Fetched 1490 kB in 0s (33.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyhjeaen5/openssl_3.5.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Fetched 58.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsb1ngo0m/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Fetched 37.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphp0344tn/libbz2-1.0_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Fetched 32.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_63ozw_/libjbig0_2.1-6.1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Fetched 9652 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbt1cz1iq/python3-certifi_2025.1.31+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Fetched 7348 B in 0s (361 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgfy32i27/python3-sphinxcontrib.jquery_4.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libc-dev-bin amd64 2.41-9 [58.0 kB] Fetched 58.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4jm80onq/libc-dev-bin_2.41-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplmwr0xg5/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Fetched 384 kB in 0s (32.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3cjzaf8u/libcurl3t64-gnutls_8.14.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-duecredit all 0.10.2-2 [70.6 kB] Fetched 70.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68obw2k4/python3-duecredit_0.10.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Fetched 31.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfl4hnl99/python3-sortedcontainers_2.4.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Fetched 49.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp88h0cyps/gcc-14-base_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Fetched 13.9 kB in 0s (360 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3knvsv3b/libraqm0_0.10.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Fetched 26.1 kB in 0s (523 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6hf_g9e/python3-dev_3.13.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Fetched 1568 B in 0s (40.4 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp9sh3yrnw/cpp_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB] Fetched 2737 kB in 0s (47.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzxxzd4oa/python-matplotlib-data_3.10.1+dfsg1-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-lxml amd64 5.4.0-1 [1297 kB] Fetched 1297 kB in 0s (95.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwijk0oks/python3-lxml_5.4.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Fetched 1158 kB in 0s (27.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphvh4obvv/python3-reportlab_4.3.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Fetched 20.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdhpro6t9/libxau6_1.0.11-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libc6 amd64 2.41-9 [2851 kB] Fetched 2851 kB in 0s (51.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprgqgjezi/libc6_2.41-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-msmb-theme all 1.2.0-4 [33.8 kB] Fetched 33.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuvryhnj0/python3-msmb-theme_1.2.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpurmijh6r/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Fetched 68.9 kB in 0s (1728 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk47v2zo7/libuchardet0_0.0.8-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Fetched 1672 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpulb0485g/python3-biopython_1.85+dfsg-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Fetched 11.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zbbs59o/python3-pyproject-hooks_1.2.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjagdpgzw/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (85.8 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpqstit9he/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp8ahfxhs_/libmagic1t64_5.46-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-joblib all 1.4.2-4 [216 kB] Fetched 216 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpey9tp_2q/python3-joblib_1.4.2-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwb8ujuih/libxcb-render0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Fetched 216 kB in 0s (5034 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdl2nep60/python3-contourpy_1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 coreutils amd64 9.7-3 [3024 kB] Fetched 3024 kB in 0s (138 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeyl4w5ig/coreutils_9.7-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Fetched 81.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn6jvxlud/libk5crypto3_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Fetched 307 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz1ijgqcl/libbrotli1_1.1.0-2+b7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyirx_y1f/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-latexcodec all 3.0.0-1 [17.5 kB] Fetched 17.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr55aa696/python3-latexcodec_3.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Fetched 11.0 MB in 0s (209 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppeoc3fra/cpp-14-x86-64-linux-gnu_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Fetched 425 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8hrlqf53/libp11-kit0_0.25.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Fetched 698 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7eo3s5su/libxml2_2.12.7+dfsg+really2.9.14-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Fetched 36.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpepi2sm3c/libmd0_1.1.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Fetched 4595 kB in 0s (88.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv1beowi2/python3-pandas-lib_2.2.3+dfsg-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-netcdf4 amd64 1.7.2-1+b4 [622 kB] Fetched 622 kB in 0s (14.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1qigfcxt/python3-netcdf4_1.7.2-1+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pytest all 8.3.5-2 [250 kB] Fetched 250 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoc1tc7dp/python3-pytest_8.3.5-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libnetcdf22 amd64 1:4.9.3-1 [517 kB] Fetched 517 kB in 0s (0 B/s) dpkg-name: info: moved 'libnetcdf22_1%3a4.9.3-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpg5yti019/libnetcdf22_4.9.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libuuid1 amd64 2.41-5 [37.6 kB] Fetched 37.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ao6_286/libuuid1_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 ca-certificates all 20250419 [162 kB] Fetched 162 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprrpjj5j1/ca-certificates_20250419_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (70.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpju3lr4wk/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Fetched 144 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp65xew9xm/libxcb1_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Fetched 90.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpko7sdnwp/libdebhelper-perl_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libaudit1 amd64 1:4.0.5-1 [59.4 kB] Fetched 59.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.5-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp70xbpzly/libaudit1_4.0.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 dash amd64 0.5.12-12 [98.5 kB] Fetched 98.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6eg0r3pl/dash_0.5.12-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Fetched 10.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8f1cqcdh/python3-zopfli_0.2.3.post1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Fetched 79.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu706cmly/python3-dateutil_2.9.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Fetched 76.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp754wtkfb/libnghttp2-14_1.64.0-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpam-modules amd64 1.7.0-5 [179 kB] Fetched 179 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx3936j1z/libpam-modules_1.7.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Fetched 113 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5tladylo/libwebpdemux2_1.5.0-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98sib7ii/libkrb5support0_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (295 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp94qdc9b1/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Fetched 9308 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz57rd47a/libatomic1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 perl-base amd64 5.40.1-5 [1665 kB] Fetched 1665 kB in 0s (37.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4mklcwbg/perl-base_5.40.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Fetched 29.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbepbtote/libngtcp2-crypto-gnutls8_1.11.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 sphinx-common all 8.1.3-5 [617 kB] Fetched 617 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw8edzbrf/sphinx-common_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Fetched 1488 kB in 0s (92.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9s4mqz1c/libhwasan0_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Fetched 35.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp533svqwg/libimagequant0_2.18.0-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Fetched 168 kB in 0s (0 B/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpvwuks376/libjpeg62-turbo_2.1.5-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Fetched 27.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvy6uhzgr/libxxhash0_0.8.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libmpfr6 amd64 4.2.2-1 [729 kB] Fetched 729 kB in 0s (60.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcy9jh6vh/libmpfr6_4.2.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Fetched 17.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libxss1_1%3a1.2.3-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmp276vstqc/libxss1_1.2.3-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdcwfqjox/libidn2-0_2.3.8-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Fetched 27.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpsqcta8vh/libxdmcp6_1.1.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 920 kB in 0s (90.7 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp01j02fwg/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 perl-modules-5.40 all 5.40.1-5 [3021 kB] Fetched 3021 kB in 0s (171 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvsaxf8to/perl-modules-5.40_5.40.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Fetched 194 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9bi5oq8j/libldap2_2.6.10+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pytz all 2025.2-3 [152 kB] Fetched 152 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7zrouns/python3-pytz_2025.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pybtex-docutils all 1.0.2-1 [8064 B] Fetched 8064 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphnsz7gzl/python3-pybtex-docutils_1.0.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-babel all 2.17.0-1 [117 kB] Fetched 117 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2snnw5b3/python3-babel_2.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Fetched 65.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-8_amd64.deb' to '/srv/rebuilderd/tmp/tmpme39ky4_/libproc2-0_4.0.4-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 openssl-provider-legacy amd64 3.5.0-2 [307 kB] Fetched 307 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwegr9xi3/openssl-provider-legacy_3.5.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Fetched 24.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplf5qqcn2/libffi8_3.4.8-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-charset-normalizer amd64 3.4.2-1 [128 kB] Fetched 128 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprh9q1jv4/python3-charset-normalizer_3.4.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Fetched 5136 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpmatgwpt6/gcc_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-mmtf all 1.1.3-1 [17.0 kB] Fetched 17.0 kB in 0s (87.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx9evtf5f/python3-mmtf_1.1.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Fetched 94.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwucpursz/bsdextrautils_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Fetched 105 kB in 0s (656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi9biu27f/libxcb-shm0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Fetched 26.5 kB in 0s (72.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmb610_w3/libfribidi0_1.0.16-1_amd64.deb' Downloading dependency 131 of 385: grep:amd64=3.11-4 Downloading dependency 132 of 385: python3-mrcfile:amd64=1.5.4-2 Downloading dependency 133 of 385: fonts-lyx:amd64=2.4.3-1 Downloading dependency 134 of 385: python3-ufolib2:amd64=0.17.1+dfsg1-1 Downloading dependency 135 of 385: perl:amd64=5.40.1-5 Downloading dependency 136 of 385: python3-chardet:amd64=5.2.0+dfsg-2 Downloading dependency 137 of 385: libsasl2-modules-db:amd64=2.1.28+dfsg1-9 Downloading dependency 138 of 385: python3-jaraco.context:amd64=6.0.1-1 Downloading dependency 139 of 385: python3-snowballstemmer:amd64=2.2.0-4 Downloading dependency 140 of 385: tzdata:amd64=2025b-4 Downloading dependency 141 of 385: libgdbm-compat4t64:amd64=1.24-2 Downloading dependency 142 of 385: python3-sklearn-lib:amd64=1.4.2+dfsg-8 Downloading dependency 143 of 385: unicode-data:amd64=15.1.0-1 Downloading dependency 144 of 385: libfontenc1:amd64=1:1.1.8-1+b2 Downloading dependency 145 of 385: liblastlog2-2:amd64=2.41-5 Downloading dependency 146 of 385: sphinx-rtd-theme-common:amd64=3.0.2+dfsg-3 Downloading dependency 147 of 385: linux-libc-dev:amd64=6.12.35-1 Downloading dependency 148 of 385: python3-gsd:amd64=3.4.2-2+b1 Downloading dependency 149 of 385: python3-seaborn:amd64=0.13.2-5 Downloading dependency 150 of 385: python3-yaml:amd64=6.0.2-1+b2 Downloading dependency 151 of 385: python3-autocommand:amd64=2.2.2-3 Downloading dependency 152 of 385: tk8.6-blt2.5:amd64=2.5.3+dfsg-8 Downloading dependency 153 of 385: dh-strip-nondeterminism:amd64=1.14.1-2 Downloading dependency 154 of 385: python3-scipy:amd64=1.15.3-1 Downloading dependency 155 of 385: libhdf5-hl-310:amd64=1.14.5+repack-3 Downloading dependency 156 of 385: g++-14:amd64=14.2.0-19 Downloading dependency 157 of 385: fonts-dejavu-core:amd64=2.37-8 Downloading dependency 158 of 385: groff-base:amd64=1.23.0-9 Downloading dependency 159 of 385: liblzf1:amd64=3.6-4+b3 Downloading dependency 160 of 385: libpython3.13-minimal:amd64=3.13.5-2 Downloading dependency 161 of 385: python3-numpy:amd64=1:2.2.4+ds-1 Downloading dependency 162 of 385: python3-tk:amd64=3.13.4-1 Downloading dependency 163 of 385: python3-idna:amd64=3.10-1 Downloading dependency 164 of 385: libkeyutils1:amd64=1.6.3-6 Downloading dependency 165 of 385: diffutils:amd64=1:3.10-4 Downloading dependency 166 of 385: python3-looseversion:amd64=1.3.0-3 Downloading dependency 167 of 385: python3-wheel:amd64=0.46.1-2 Downloading dependency 168 of 385: python3.13-tk:amd64=3.13.5-2 Downloading dependency 169 of 385: libtk8.6:amd64=8.6.16-1 Downloading dependency 170 of 385: libelf1t64:amd64=0.192-4 Downloading dependency 171 of 385: openssl:amd64=3.5.0-2 Downloading dependency 172 of 385: librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 173 of 385: libbz2-1.0:amd64=1.0.8-6 Downloading dependency 174 of 385: libjbig0:amd64=2.1-6.1+b2 Downloading dependency 175 of 385: python3-certifi:amd64=2025.1.31+ds-1 Downloading dependency 176 of 385: python3-sphinxcontrib.jquery:amd64=4.1-5 Downloading dependency 177 of 385: libc-dev-bin:amd64=2.41-9 Downloading dependency 178 of 385: python3-jaraco.functools:amd64=4.1.0-1 Downloading dependency 179 of 385: libcurl3t64-gnutls:amd64=8.14.1-2 Downloading dependency 180 of 385: python3-duecredit:amd64=0.10.2-2 Downloading dependency 181 of 385: python3-sortedcontainers:amd64=2.4.0-2 Downloading dependency 182 of 385: gcc-14-base:amd64=14.2.0-19 Downloading dependency 183 of 385: libraqm0:amd64=0.10.2-1 Downloading dependency 184 of 385: python3-dev:amd64=3.13.5-1 Downloading dependency 185 of 385: cpp:amd64=4:14.2.0-1 Downloading dependency 186 of 385: python-matplotlib-data:amd64=3.10.1+dfsg1-4 Downloading dependency 187 of 385: python3-lxml:amd64=5.4.0-1 Downloading dependency 188 of 385: python3-reportlab:amd64=4.3.1-1 Downloading dependency 189 of 385: libxau6:amd64=1:1.0.11-1 Downloading dependency 190 of 385: libc6:amd64=2.41-9 Downloading dependency 191 of 385: python3-msmb-theme:amd64=1.2.0-4 Downloading dependency 192 of 385: libtool:amd64=2.5.4-4 Downloading dependency 193 of 385: libuchardet0:amd64=0.0.8-1+b2 Downloading dependency 194 of 385: python3-biopython:amd64=1.85+dfsg-4 Downloading dependency 195 of 385: python3-pyproject-hooks:amd64=1.2.0-1 Downloading dependency 196 of 385: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 197 of 385: automake:amd64=1:1.17-4 Downloading dependency 198 of 385: libmagic1t64:amd64=1:5.46-5 Downloading dependency 199 of 385: python3-joblib:amd64=1.4.2-4 Downloading dependency 200 of 385: libxcb-render0:amd64=1.17.0-2+b1 Downloading dependency 201 of 385: python3-contourpy:amd64=1.3.1-1+b1 Downloading dependency 202 of 385: coreutils:amd64=9.7-3 Downloading dependency 203 of 385: libk5crypto3:amd64=1.21.3-5 Downloading dependency 204 of 385: libbrotli1:amd64=1.1.0-2+b7 Downloading dependency 205 of 385: python3-zipp:amd64=3.21.0-1 Downloading dependency 206 of 385: python3-latexcodec:amd64=3.0.0-1 Downloading dependency 207 of 385: cpp-14-x86-64-linux-gnu:amd64=14.2.0-19 Downloading dependency 208 of 385: libp11-kit0:amd64=0.25.5-3 Downloading dependency 209 of 385: libxml2:amd64=2.12.7+dfsg+really2.9.14-1 Downloading dependency 210 of 385: libmd0:amd64=1.1.0-2+b1 Downloading dependency 211 of 385: python3-pandas-lib:amd64=2.2.3+dfsg-9 Downloading dependency 212 of 385: python3-netcdf4:amd64=1.7.2-1+b4 Downloading dependency 213 of 385: python3-pytest:amd64=8.3.5-2 Downloading dependency 214 of 385: libnetcdf22:amd64=1:4.9.3-1 Downloading dependency 215 of 385: libuuid1:amd64=2.41-5 Downloading dependency 216 of 385: ca-certificates:amd64=20250419 Downloading dependency 217 of 385: python3-setuptools:amd64=78.1.1-0.1 Downloading dependency 218 of 385: libxcb1:amd64=1.17.0-2+b1 Downloading dependency 219 of 385: libdebhelper-perl:amd64=13.24.2 Downloading dependency 220 of 385: libaudit1:amd64=1:4.0.5-1 Downloading dependency 221 of 385: dash:amd64=0.5.12-12 Downloading dependency 222 of 385: python3-zopfli:amd64=0.2.3.post1-1+b1 Downloading dependency 223 of 385: python3-dateutil:amd64=2.9.0-4 Downloading dependency 224 of 385: libnghttp2-14:amd64=1.64.0-1.1 Downloading dependency 225 of 385: libpam-modules:amd64=1.7.0-5 Downloading dependency 226 of 385: libwebpdemux2:amd64=1.5.0-0.1 Downloading dependency 227 of 385: libkrb5support0:amd64=1.21.3-5 Downloading dependency 228 of 385: python3-jaraco.text:amd64=4.0.0-1 Downloading dependency 229 of 385: libatomic1:amd64=14.2.0-19 Downloading dependency 230 of 385: perl-base:amd64=5.40.1-5 Downloading dependency 231 of 385: libngtcp2-crypto-gnutls8:amd64=1.11.0-1 Downloading dependency 232 of 385: sphinx-common:amd64=8.1.3-5 Downloading dependency 233 of 385: libhwasan0:amd64=14.2.0-19 Downloading dependency 234 of 385: libimagequant0:amd64=2.18.0-1+b2 Downloading dependency 235 of 385: libjpeg62-turbo:amd64=1:2.1.5-4 Downloading dependency 236 of 385: libxxhash0:amd64=0.8.3-2 Downloading dependency 237 of 385: libmpfr6:amd64=4.2.2-1 Downloading dependency 238 of 385: libxss1:amd64=1:1.2.3-1+b3 Downloading dependency 239 of 385: libidn2-0:amd64=2.3.8-2 Downloading dependency 240 of 385: libxdmcp6:amd64=1:1.1.5-1 Downloading dependency 241 of 385: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 242 of 385: perl-modules-5.40:amd64=5.40.1-5 Downloading dependency 243 of 385: libldap2:amd64=2.6.10+dfsg-1 Downloading dependency 244 of 385: python3-pytz:amd64=2025.2-3 Downloading dependency 245 of 385: python3-pybtex-docutils:amd64=1.0.2-1 Downloading dependency 246 of 385: python3-babel:amd64=2.17.0-1 Downloading dependency 247 of 385: libproc2-0:amd64=2:4.0.4-8 Downloading dependency 248 of 385: openssl-provider-legacy:amd64=3.5.0-2 Downloading dependency 249 of 385: libffi8:amd64=3.4.8-2 Downloading dependency 250 of 385: python3-charset-normalizer:amd64=3.4.2-1 Downloading dependency 251 of 385: gcc:amd64=4:14.2.0-1 Downloading dependency 252 of 385: python3-mmtf:amd64=1.1.3-1 Downloading dependency 253 of 385: bsdextrautils:amd64=2.41-5 Downloading dependency 254 of 385: libxcb-shm0:amd64=1.17.0-2+b1 Downloading dependency 255 of 385: libfribidi0:amd64=1.0.16-1 Downloading dependency 256 of 385: python3-monotonic:amd64=1.6-3Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-monotonic all 1.6-3 [5340 B] Fetched 5340 B in 0s (12.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0lj3kwy5/python3-monotonic_1.6-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Fetched 233 kB in 0s (2138 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxd72vnwm/libxslt1.1_1.1.35-1.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Fetched 95.2 kB in 0s (610 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk_y5viu1/python3-fs_2.4.16-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Fetched 577 kB in 0s (5393 kB/s) dpkg-name: info: moved 'xfonts-encodings_1%3a1.0.4-2.2_all.deb' to '/srv/rebuilderd/tmp/tmpw4uy9vqf/xfonts-encodings_1.0.4-2.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Fetched 131 kB in 0s (1015 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6_6bpo3h/libngtcp2-16_1.11.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (782 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89qbc6fi/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Fetched 4148 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3p68z_b_/python3-sympy_1.13.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 liblz4-1 amd64 1.10.0-4 [63.9 kB] Fetched 63.9 kB in 0s (662 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyrk059d9/liblz4-1_1.10.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Fetched 6396 B in 0s (16.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe2mws4dk/python3-iniconfig_1.1.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Fetched 23.8 kB in 0s (284 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp999_jmly/libaec0_1.1.3-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Fetched 815 kB in 0s (5040 kB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmptc50qlu4/libx11-6_1.8.12-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Fetched 90.1 kB in 0s (1360 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdyt64r6v/libcrypt1_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcap2 amd64 1:2.75-9 [28.4 kB] Fetched 28.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.75-9_amd64.deb' to '/srv/rebuilderd/tmp/tmpmemul0o7/libcap2_2.75-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Fetched 560 kB in 0s (19.8 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp3f6o1ezk/libgmp10_6.3.0+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Fetched 135 kB in 0s (7862 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc7p26rpr/libncursesw6_6.5+20250216-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Fetched 298 kB in 0s (3280 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcq99_j_r/libpcre2-8-0_10.45-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpython3-all-dev amd64 3.13.5-1 [1068 B] Fetched 1068 B in 0s (2872 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzm44_zw8/libpython3-all-dev_3.13.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpam0g amd64 1.7.0-5 [69.9 kB] Fetched 69.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpku85r4rc/libpam0g_1.7.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 ncurses-bin amd64 6.5+20250216-2 [438 kB] Fetched 438 kB in 0s (6208 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcvawjtgj/ncurses-bin_6.5+20250216-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-all amd64 3.13.5-1 [1048 B] Fetched 1048 B in 0s (17.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq0ytz42x/python3-all_3.13.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Fetched 27.9 kB in 0s (246 kB/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpme2_8592/libxrender1_0.9.12-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 file amd64 1:5.46-5 [43.6 kB] Fetched 43.6 kB in 0s (421 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpo18z_0l8/file_5.46-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Fetched 16.6 kB in 0s (211 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yhoo0wz/python3-platformdirs_4.3.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Fetched 42.0 kB in 0s (122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxafphiax/libpipeline1_1.5.8-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Fetched 305 kB in 0s (2365 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt37cl01n/libnettle8t64_3.10.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2s0stqfe/hostname_3.25_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libsframe1 amd64 2.44-3 [78.4 kB] Fetched 78.4 kB in 0s (1363 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ilv522_/libsframe1_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Fetched 138 kB in 0s (3333 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2q6nr26u/libgssapi-krb5-2_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Fetched 538 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpui6m6jz6/libcairo2_1.18.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Fetched 9496 B in 0s (592 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ehsefyz/python3-cycler_0.12.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sphinx-sitemap all 2.6.0-1 [8508 B] Fetched 8508 B in 0s (70.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7juw12o/python3-sphinx-sitemap_2.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-tqdm all 4.67.1-5 [90.8 kB] Fetched 90.8 kB in 0s (658 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpibt9l4u1/python3-tqdm_4.67.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Fetched 403 kB in 0s (6192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp30khqiye/python3-docutils_0.21.2+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sphinx all 8.1.3-5 [468 kB] Fetched 468 kB in 0s (4576 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy65y3koy/python3-sphinx_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Fetched 1465 kB in 0s (3827 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0f6g57j8/libgnutls30t64_3.8.9-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Fetched 75.4 kB in 0s (928 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnby931xr/libgraphite2-3_1.3.14-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libsqlite3-0 amd64 3.46.1-6 [915 kB] Fetched 915 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv3ka4l3e/libsqlite3-0_3.46.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Fetched 126 kB in 0s (3564 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvfuh5bkf/libwebpmux3_1.5.0-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Fetched 72.8 kB in 0s (1518 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplgmysekt/libgcc-s1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB] Fetched 17.6 kB in 0s (432 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx4ffvzdf/libcap-ng0_0.8.5-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (49.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq25tn9gx/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 liblzma5 amd64 5.8.1-1 [309 kB] Fetched 309 kB in 0s (3844 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpphcmvbek/liblzma5_5.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-urllib3 all 2.3.0-2 [114 kB] Fetched 114 kB in 0s (1286 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuzklnjv7/python3-urllib3_2.3.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Fetched 479 kB in 0s (9303 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiiwrj8hg/libharfbuzz0b_10.2.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 x11-common all 1:7.7+24 [217 kB] Fetched 217 kB in 0s (6192 kB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+24_all.deb' to '/srv/rebuilderd/tmp/tmp6mh5x2_8/x11-common_7.7+24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Fetched 39.8 kB in 0s (303 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv98x4uc4/libjansson4_2.14-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Fetched 5667 kB in 0s (71.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3wir13mc/libjs-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Fetched 204 kB in 0s (2316 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxcdkq52/libopenjp2-7_2.5.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB] Fetched 348 kB in 0s (8217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8yj_hm8q/libtinfo6_6.5+20250216-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 debianutils amd64 5.23.1 [92.3 kB] Fetched 92.3 kB in 0s (5454 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0bry6b3z/debianutils_5.23.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB] Fetched 304 kB in 0s (3162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwhuwftka/libzstd1_1.5.7+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Fetched 26.0 kB in 0s (282 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjnpe55gm/libitm1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 gettext amd64 0.23.1-2 [1680 kB] Fetched 1680 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi0kwbgg3/gettext_0.23.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Fetched 72.2 kB in 0s (590 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6k5iqa1l/python3-requests_2.32.3+dfsg-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Fetched 49.9 kB in 0s (735 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdkoolvry/libtasn1-6_4.20.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-packaging all 25.0-1 [56.6 kB] Fetched 56.6 kB in 0s (448 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmu2tr0ji/python3-packaging_25.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Fetched 10.4 kB in 0s (108 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsapy8kzf/libpython3-dev_3.13.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3 [1014 kB] Fetched 1014 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy7nfjdev/binutils-x86-64-linux-gnu_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Fetched 145 kB in 0s (740 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7utiyhvv/libquadmath0_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (225 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpudygords/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 util-linux amd64 2.41-5 [1235 kB] Fetched 1235 kB in 0s (29.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpql539zjh/util-linux_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Fetched 146 kB in 0s (2623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp320bm8j9/python3-pyparsing_3.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Fetched 67.4 kB in 1s (132 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb2clbnzm/python3-more-itertools_10.7.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libperl5.40 amd64 5.40.1-5 [4335 kB] Fetched 4335 kB in 0s (34.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8dkvbgie/libperl5.40_5.40.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Fetched 248 kB in 0s (3990 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq33qoksc/libqhull-r8.0_2020.2-6+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Fetched 84.7 kB in 0s (597 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpygq75b13/libselinux1_3.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Fetched 2210 kB in 0s (19.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnewqwolr/fonts-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (2086 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl0odqtpl/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Fetched 757 kB in 0s (7211 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp42x0woiz/python3.13_3.13.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Fetched 2224 kB in 0s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp33nm8a4b/python3.13-minimal_3.13.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Fetched 489 kB in 0s (1094 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg9qeee4b/fonts-dejavu-mono_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Fetched 335 kB in 0s (993 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps0yecdmm/libhogweed6t64_3.10.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (438 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpznpmyk8k/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-sklearn all 1.4.2+dfsg-8 [2248 kB] Fetched 2248 kB in 0s (139 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcjynsslq/python3-sklearn_1.4.2+dfsg-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libc6-dev amd64 2.41-9 [1989 kB] Fetched 1989 kB in 0s (132 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp914asu1h/libc6-dev_2.41-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 procps amd64 2:4.0.4-8 [881 kB] Fetched 881 kB in 0s (76.9 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-8_amd64.deb' to '/srv/rebuilderd/tmp/tmpj0t0rdl1/procps_4.0.4-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4vwo422w/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB] Fetched 51.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7a1rubko/libseccomp2_2.6.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Fetched 836 kB in 0s (72.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpboir99e8/libgfortran5_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Fetched 6050 kB in 0s (207 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp931u9kox/python-babel-localedata_2.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Fetched 37.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr07irma2/python3-typeguard_4.4.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 autopoint all 0.23.1-2 [770 kB] Fetched 770 kB in 0s (72.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtrf06pu/autopoint_0.23.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 debhelper all 13.24.2 [919 kB] Fetched 919 kB in 0s (76.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxtnjjqh0/debhelper_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Fetched 9904 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoed1qhhz/python3-rlpycairo_0.3.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpl8ne1gd9/libmagic-mgc_5.46-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-hypothesis all 6.130.5-2 [336 kB] Fetched 336 kB in 0s (33.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpns02ya4g/python3-hypothesis_6.130.5-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 patch amd64 2.8-2 [134 kB] Fetched 134 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyk4ulecr/patch_2.8-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Fetched 419 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjweg9t6v/python3-mpmath_1.3.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Fetched 18.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpng3bdxsa/python3-installer_0.7.0+dfsg1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpt2qaf7mf/libattr1_2.5.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Fetched 6688 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp442omhgj/python3-imagesize_1.4.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libsystemd0 amd64 257.7-1 [453 kB] Fetched 453 kB in 0s (32.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q8_pbss/libsystemd0_257.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Fetched 119 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpbacepwpz/libcrypt-dev_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Fetched 14.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjzcutavp/python3-markupsafe_2.1.5-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Fetched 139 kB in 0s (0 B/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp2ju3wt2o/python3-numpy-dev_2.2.4+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Fetched 843 kB in 0s (76.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv2hyzjx7/libgcrypt20_1.11.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpam-modules-bin amd64 1.7.0-5 [49.1 kB] Fetched 49.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprkcvcl_s/libpam-modules-bin_1.7.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Fetched 318 kB in 0s (7060 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxotjx53c/libwebp7_1.5.0-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Fetched 106 kB in 0s (2440 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnst9r9ll/libzopfli1_1.0.3-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libdebconfclient0 amd64 0.279 [10.5 kB] Fetched 10.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9lolsnlu/libdebconfclient0_0.279_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-cftime amd64 1.6.4-2 [216 kB] Fetched 216 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lg9n74g/python3-cftime_1.6.4-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Fetched 452 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz_3x_k6h/libfreetype6_2.13.3+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Fetched 160 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb2zf7ede/libblas3_3.12.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (30.8 kB/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpyfjrhz3_/g++-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Fetched 1074 kB in 0s (89.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmgc37pl1/libubsan1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Fetched 540 kB in 0s (51.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcto5m6pd/gcc-14_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-citeproc all 0.8.2-1 [99.0 kB] Fetched 99.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5tnk0u2/python3-citeproc_0.8.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Fetched 1204 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaby7ia6a/liblsan0_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Fetched 116 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpucaia1lw/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Fetched 248 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj5ky01ql/libpixman-1-0_0.44.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3.13-dev amd64 3.13.5-2 [504 kB] Fetched 504 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2dmjio2r/python3.13-dev_3.13.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libblkid1 amd64 2.41-5 [171 kB] Fetched 171 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpppr7owpn/libblkid1_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Fetched 2672 kB in 0s (170 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1n8z__83/libgcc-14-dev_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Fetched 1344 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpfq1vmd4x/g++_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr22auvs_/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Fetched 169 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvetyjlb3/libreadline8t64_8.2-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq_5votr9/python3-decorator_5.2.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Fetched 21.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdmfdq19d/python3-threadpoolctl_3.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Fetched 1042 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3iygdgjc/libtcl8.6_8.6.16+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Fetched 704 kB in 0s (69.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyvapxnt6/libdb5.3t64_5.3.28+dfsg2-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-fasteners all 0.18-2 [14.0 kB] Fetched 14.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_1uj5mx/python3-fasteners_0.18-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Fetched 89.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ksffuyj/python3-freetype_2.5.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-h5py all 3.13.0-1 [15.0 kB] Fetched 15.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdw1k8wuf/python3-h5py_3.13.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 bsdutils amd64 1:2.41-5 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: info: moved 'bsdutils_1%3a2.41-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp6frbjyi2/bsdutils_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Fetched 43.4 kB in 0s (1006 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxi8lbii/python3-defusedxml_0.7.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (8354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyn_t7dj2/sed_4.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-six all 1.17.0-1 [16.5 kB] Fetched 16.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1cgt7egi/python3-six_1.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 libaudit-common all 1:4.0.5-1 [13.5 kB] Fetched 13.5 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.5-1_all.deb' to '/srv/rebuilderd/tmp/tmpwz6omkpg/libaudit-common_4.0.5-1_all.deb' Downloading dependency 257 of 385: libxslt1.1:amd64=1.1.35-1.2 Downloading dependency 258 of 385: python3-fs:amd64=2.4.16-7 Downloading dependency 259 of 385: xfonts-encodings:amd64=1:1.0.4-2.2 Downloading dependency 260 of 385: libngtcp2-16:amd64=1.11.0-1 Downloading dependency 261 of 385: media-types:amd64=13.0.0 Downloading dependency 262 of 385: python3-sympy:amd64=1.13.3-5 Downloading dependency 263 of 385: liblz4-1:amd64=1.10.0-4 Downloading dependency 264 of 385: python3-iniconfig:amd64=1.1.1-2 Downloading dependency 265 of 385: libaec0:amd64=1.1.3-1+b1 Downloading dependency 266 of 385: libx11-6:amd64=2:1.8.12-1 Downloading dependency 267 of 385: libcrypt1:amd64=1:4.4.38-1 Downloading dependency 268 of 385: libcap2:amd64=1:2.75-9 Downloading dependency 269 of 385: libgmp10:amd64=2:6.3.0+dfsg-3 Downloading dependency 270 of 385: 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286 of 385: python3-sphinx-sitemap:amd64=2.6.0-1 Downloading dependency 287 of 385: python3-tqdm:amd64=4.67.1-5 Downloading dependency 288 of 385: python3-docutils:amd64=0.21.2+dfsg-2 Downloading dependency 289 of 385: python3-sphinx:amd64=8.1.3-5 Downloading dependency 290 of 385: libgnutls30t64:amd64=3.8.9-3 Downloading dependency 291 of 385: libgraphite2-3:amd64=1.3.14-2+b1 Downloading dependency 292 of 385: libsqlite3-0:amd64=3.46.1-6 Downloading dependency 293 of 385: libwebpmux3:amd64=1.5.0-0.1 Downloading dependency 294 of 385: libgcc-s1:amd64=14.2.0-19 Downloading dependency 295 of 385: libcap-ng0:amd64=0.8.5-4+b1 Downloading dependency 296 of 385: dh-autoreconf:amd64=20 Downloading dependency 297 of 385: liblzma5:amd64=5.8.1-1 Downloading dependency 298 of 385: python3-urllib3:amd64=2.3.0-2 Downloading dependency 299 of 385: libharfbuzz0b:amd64=10.2.0-1+b1 Downloading dependency 300 of 385: x11-common:amd64=1:7.7+24 Downloading dependency 301 of 385: 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python3-h5py:amd64=3.13.0-1 Downloading dependency 379 of 385: bsdutils:amd64=1:2.41-5 Downloading dependency 380 of 385: python3-defusedxml:amd64=0.7.1-3 Downloading dependency 381 of 385: sed:amd64=4.9-2 Downloading dependency 382 of 385: python3-six:amd64=1.17.0-1 Downloading dependency 383 of 385: libaudit-common:amd64=1:4.0.5-1 Downloading dependency 384 of 385: mawk:amd64=1.3.4.20250131-1Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Fetched 141 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt8c3bz2m/mawk_1.3.4.20250131-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250711T083501Z sid/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [23.8 MB] Fetched 23.8 MB in 0s (206 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxgj5iud/python3-matplotlib_3.10.1+dfsg1-4_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp17uwbrag/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.p5e_HdcQH2 as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.p5e_HdcQH2 127.0.0.1 - - [30/Jul/2025 21:36:50] code 404, message File not found 127.0.0.1 - - [30/Jul/2025 21:36:50] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:35971 ./ InRelease 127.0.0.1 - - [30/Jul/2025 21:36:50] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:35971 ./ Release [462 B] 127.0.0.1 - - [30/Jul/2025 21:36:50] code 404, message File not found 127.0.0.1 - - [30/Jul/2025 21:36:50] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:35971 ./ Release.gpg 127.0.0.1 - - [30/Jul/2025 21:36:50] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:35971 ./ Packages [477 kB] Fetched 477 kB in 0s (7503 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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- [30/Jul/2025 21:36:52] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Jul/2025 21:36:52] "GET /./sysvinit-utils_3.14-4_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.p5e_HdcQH2 127.0.0.1 - - [30/Jul/2025 21:36:54] code 404, message File not found 127.0.0.1 - - [30/Jul/2025 21:36:54] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:35971 ./ InRelease 127.0.0.1 - - [30/Jul/2025 21:36:54] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:35971 ./ Release 127.0.0.1 - - [30/Jul/2025 21:36:54] code 404, message File not found 127.0.0.1 - - [30/Jul/2025 21:36:54] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:35971 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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Building dependency tree... Reading state information... libyaml-0-2 is already the newest version (0.2.5-2). libyaml-0-2 set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libexpat1-dev is already the newest version (2.7.1-1). libexpat1-dev set to manually installed. libx11-data is already the newest version (2:1.8.12-1). libx11-data set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. m4 is already the newest version (1.4.19-8). m4 set to manually installed. blt is already the newest version (2.5.3+dfsg-8). blt set to manually installed. tar is already the newest version (1.35+dfsg-3.1). base-files is already the newest version (13.8). libpython3-stdlib is already the newest version (3.13.5-1). libpython3-stdlib set to manually installed. libtiff6 is already the newest version (4.7.0-3). libtiff6 set to manually installed. libpython3.13-stdlib is already the newest version (3.13.5-2). libpython3.13-stdlib set to manually installed. libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. debconf is already the newest version (1.5.91). libcom-err2 is already the newest version (1.47.2-3+b1). libcom-err2 set to manually installed. python3 is already the newest version (3.13.5-1). python3 set to manually installed. libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. python3-alabaster is already the newest version (0.7.16-0.1). python3-alabaster set to manually installed. gzip is already the newest version (1.13-1). libjson-perl is already the newest version (4.10000-1). libjson-perl set to manually installed. g++-14-x86-64-linux-gnu is already the newest version (14.2.0-19). g++-14-x86-64-linux-gnu set to manually installed. binutils is already the newest version (2.44-3). binutils set to manually installed. libcc1-0 is already the newest version (14.2.0-19). libcc1-0 set to manually installed. python3-filelock is already the newest version (3.18.0-1). python3-filelock set to manually installed. python3-pil.imagetk is already the newest version (11.1.0-5+b1). python3-pil.imagetk set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-9). libsasl2-2 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). gettext-base is already the newest version (0.23.1-2). gettext-base set to manually installed. dpkg is already the newest version (1.22.21). sensible-utils is already the newest version (0.0.25). sensible-utils set to manually installed. libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1). libjs-jquery set to manually installed. libctf-nobfd0 is already the newest version (2.44-3). libctf-nobfd0 set to manually installed. python3-all-dev is already the newest version (3.13.5-1). python3-all-dev set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:14.2.0-1). gcc-x86-64-linux-gnu set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. fonts-lato is already the newest version (2.015-1). fonts-lato set to manually installed. python3-minimal is already the newest version (3.13.5-1). python3-minimal set to manually installed. binutils-common is already the newest version (2.44-3). binutils-common set to manually installed. libfontconfig1 is already the newest version (2.15.0-2.3). libfontconfig1 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. libsz2 is already the newest version (1.1.3-1+b1). libsz2 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libsmartcols1 is already the newest version (2.41-5). docutils-common is already the newest version (0.21.2+dfsg-2). docutils-common set to manually installed. libexpat1 is already the newest version (2.7.1-1). libexpat1 set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. python3-attr is already the newest version (25.3.0-1). python3-attr set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b3). libxext6 set to manually installed. base-passwd is already the newest version (3.6.7). libnghttp3-9 is already the newest version (1.8.0-1). libnghttp3-9 set to manually installed. libssl3t64 is already the newest version (3.5.0-2). findutils is already the newest version (4.10.0-3). autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. cython3 is already the newest version (3.0.11+dfsg-2+b1). cython3 set to manually installed. libasan8 is already the newest version (14.2.0-19). libasan8 set to manually installed. libxft2 is already the newest version (2.3.6-1+b4). libxft2 set to manually installed. libudev1 is already the newest version (257.7-1). python3-pygments is already the newest version (2.18.0+dfsg-2). python3-pygments set to manually installed. libgprofng0 is already the newest version (2.44-3). libgprofng0 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. python3-brotli is already the newest version (1.1.0-2+b7). python3-brotli set to manually installed. libgpg-error0 is already the newest version (1.51-4). libgpg-error0 set to manually installed. libjs-sphinxdoc is already the newest version (8.1.3-5). libjs-sphinxdoc set to manually installed. python3-build is already the newest version (1.2.2-2). python3-build set to manually installed. fonts-urw-base35 is already the newest version (20200910-8). fonts-urw-base35 set to manually installed. xml-core is already the newest version (0.19). xml-core set to manually installed. python3-roman is already the newest version (5.0-1). python3-roman set to manually installed. libglib2.0-0t64 is already the newest version (2.84.3-1). libglib2.0-0t64 set to manually installed. libctf0 is already the newest version (2.44-3). libctf0 set to manually installed. libtsan2 is already the newest version (14.2.0-19). libtsan2 set to manually installed. fontconfig-config is already the newest version (2.15.0-2.3). fontconfig-config set to manually installed. liblcms2-2 is already the newest version (2.16-2). liblcms2-2 set to manually installed. python3-h5py-serial is already the newest version (3.13.0-1+b1). python3-h5py-serial set to manually installed. fonts-font-awesome is already the newest version (5.0.10+really4.7.0~dfsg-4.1). fonts-font-awesome set to manually installed. pybuild-plugin-pyproject is already the newest version (6.20250414). pybuild-plugin-pyproject set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:14.2.0-1). cpp-x86-64-linux-gnu set to manually installed. w3c-sgml-lib is already the newest version (1.3-3). w3c-sgml-lib set to manually installed. python3-kiwisolver is already the newest version (1.4.7-3+b1). python3-kiwisolver set to manually installed. libmount1 is already the newest version (2.41-5). libstdc++-14-dev is already the newest version (14.2.0-19). libstdc++-14-dev set to manually installed. bash is already the newest version (5.2.37-2+b3). python3-pluggy is already the newest version (1.5.0-1). python3-pluggy set to manually installed. cpp-14 is already the newest version (14.2.0-19). cpp-14 set to manually installed. python3-sphinxcontrib.bibtex is already the newest version (2.6.2-1). python3-sphinxcontrib.bibtex set to manually installed. libcurl4t64 is already the newest version (8.14.1-2). libcurl4t64 set to manually installed. python3-pandas is already the newest version (2.2.3+dfsg-9). python3-pandas set to manually installed. python3-pybtex is already the newest version (0.24.0-4). python3-pybtex set to manually installed. libpython3.13-dev is already the newest version (3.13.5-2). libpython3.13-dev set to manually installed. dh-python is already the newest version (6.20250414). dh-python set to manually installed. liblerc4 is already the newest version (4.0.0+ds-5). liblerc4 set to manually installed. xfonts-utils is already the newest version (1:7.7+7). xfonts-utils set to manually installed. libdeflate0 is already the newest version (1.23-2). libdeflate0 set to manually installed. python3-fonttools is already the newest version (4.57.0-1). python3-fonttools set to manually installed. python3-jinja2 is already the newest version (3.1.6-1). python3-jinja2 set to manually installed. python3-sphinx-rtd-theme is already the newest version (3.0.2+dfsg-3). python3-sphinx-rtd-theme set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. python3-msgpack is already the newest version (1.0.3-3+b4). python3-msgpack set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. python3-griddataformats is already the newest version (1.0.2-2). python3-griddataformats set to manually installed. libjs-jquery-ui is already the newest version (1.13.2+dfsg-1). libjs-jquery-ui set to manually installed. python3-mda-xdrlib is already the newest version (0.2.0-3). python3-mda-xdrlib set to manually installed. ncurses-base is already the newest version (6.5+20250216-2). libstdc++6 is already the newest version (14.2.0-19). libstdc++6 set to manually installed. gcc-14-x86-64-linux-gnu is already the newest version (14.2.0-19). gcc-14-x86-64-linux-gnu set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libhdf5-310 is already the newest version (1.14.5+repack-3). libhdf5-310 set to manually installed. liblapack3 is already the newest version (3.12.1-2). liblapack3 set to manually installed. sysvinit-utils is already the newest version (3.14-4). python3-lz4 is already the newest version (4.4.0+dfsg-2). python3-lz4 set to manually installed. libgomp1 is already the newest version (14.2.0-19). libgomp1 set to manually installed. python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. python3-pil is already the newest version (11.1.0-5+b1). python3-pil set to manually installed. libsharpyuv0 is already the newest version (1.5.0-0.1). libsharpyuv0 set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. init-system-helpers is already the newest version (1.68). libc-bin is already the newest version (2.41-9). libpython3.13 is already the newest version (3.13.5-2). libpython3.13 set to manually installed. python3-typing-extensions is already the newest version (4.13.2-1). python3-typing-extensions set to manually installed. libpng16-16t64 is already the newest version (1.6.48-1). libpng16-16t64 set to manually installed. libbinutils is already the newest version (2.44-3). libbinutils set to manually installed. make is already the newest version (4.4.1-2). make set to manually installed. python3-cairo is already the newest version (1.27.0-2). python3-cairo set to manually installed. python3-networkx is already the newest version (3.2.1-5). python3-networkx set to manually installed. dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. grep is already the newest version (3.11-4). python3-mrcfile is already the newest version (1.5.4-2). python3-mrcfile set to manually installed. fonts-lyx is already the newest version (2.4.3-1). fonts-lyx set to manually installed. python3-ufolib2 is already the newest version (0.17.1+dfsg1-1). python3-ufolib2 set to manually installed. perl is already the newest version (5.40.1-5). perl set to manually installed. python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-9). libsasl2-modules-db set to manually installed. python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. python3-snowballstemmer is already the newest version (2.2.0-4). python3-snowballstemmer set to manually installed. tzdata is already the newest version (2025b-4). tzdata set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. python3-sklearn-lib is already the newest version (1.4.2+dfsg-8). python3-sklearn-lib set to manually installed. unicode-data is already the newest version (15.1.0-1). unicode-data set to manually installed. libfontenc1 is already the newest version (1:1.1.8-1+b2). libfontenc1 set to manually installed. liblastlog2-2 is already the newest version (2.41-5). sphinx-rtd-theme-common is already the newest version (3.0.2+dfsg-3). sphinx-rtd-theme-common set to manually installed. linux-libc-dev is already the newest version (6.12.35-1). linux-libc-dev set to manually installed. python3-gsd is already the newest version (3.4.2-2+b1). python3-gsd set to manually installed. python3-seaborn is already the newest version (0.13.2-5). python3-seaborn set to manually installed. python3-yaml is already the newest version (6.0.2-1+b2). python3-yaml set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. tk8.6-blt2.5 is already the newest version (2.5.3+dfsg-8). tk8.6-blt2.5 set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. python3-scipy is already the newest version (1.15.3-1). python3-scipy set to manually installed. libhdf5-hl-310 is already the newest version (1.14.5+repack-3). libhdf5-hl-310 set to manually installed. g++-14 is already the newest version (14.2.0-19). g++-14 set to manually installed. fonts-dejavu-core is already the newest version (2.37-8). fonts-dejavu-core set to manually installed. groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. liblzf1 is already the newest version (3.6-4+b3). liblzf1 set to manually installed. libpython3.13-minimal is already the newest version (3.13.5-2). libpython3.13-minimal set to manually installed. python3-numpy is already the newest version (1:2.2.4+ds-1). python3-numpy set to manually installed. python3-tk is already the newest version (3.13.4-1). python3-tk set to manually installed. python3-idna is already the newest version (3.10-1). python3-idna set to manually installed. libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. diffutils is already the newest version (1:3.10-4). python3-looseversion is already the newest version (1.3.0-3). python3-looseversion set to manually installed. python3-wheel is already the newest version (0.46.1-2). python3-wheel set to manually installed. python3.13-tk is already the newest version (3.13.5-2). python3.13-tk set to manually installed. libtk8.6 is already the newest version (8.6.16-1). libtk8.6 set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. openssl is already the newest version (3.5.0-2). openssl set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libjbig0 is already the newest version (2.1-6.1+b2). libjbig0 set to manually installed. python3-certifi is already the newest version (2025.1.31+ds-1). python3-certifi set to manually installed. python3-sphinxcontrib.jquery is already the newest version (4.1-5). python3-sphinxcontrib.jquery set to manually installed. libc-dev-bin is already the newest version (2.41-9). libc-dev-bin set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. libcurl3t64-gnutls is already the newest version (8.14.1-2). libcurl3t64-gnutls set to manually installed. python3-duecredit is already the newest version (0.10.2-2). python3-duecredit set to manually installed. python3-sortedcontainers is already the newest version (2.4.0-2). python3-sortedcontainers set to manually installed. gcc-14-base is already the newest version (14.2.0-19). libraqm0 is already the newest version (0.10.2-1). libraqm0 set to manually installed. python3-dev is already the newest version (3.13.5-1). python3-dev set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. python-matplotlib-data is already the newest version (3.10.1+dfsg1-4). python-matplotlib-data set to manually installed. python3-lxml is already the newest version (5.4.0-1). python3-lxml set to manually installed. python3-reportlab is already the newest version (4.3.1-1). python3-reportlab set to manually installed. libxau6 is already the newest version (1:1.0.11-1). libxau6 set to manually installed. libc6 is already the newest version (2.41-9). python3-msmb-theme is already the newest version (1.2.0-4). python3-msmb-theme set to manually installed. libtool is already the newest version (2.5.4-4). libtool set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. python3-biopython is already the newest version (1.85+dfsg-4). python3-biopython set to manually installed. python3-pyproject-hooks is already the newest version (1.2.0-1). python3-pyproject-hooks set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. automake is already the newest version (1:1.17-4). automake set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. python3-joblib is already the newest version (1.4.2-4). python3-joblib set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b1). libxcb-render0 set to manually installed. python3-contourpy is already the newest version (1.3.1-1+b1). python3-contourpy set to manually installed. coreutils is already the newest version (9.7-3). libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. python3-latexcodec is already the newest version (3.0.0-1). python3-latexcodec set to manually installed. cpp-14-x86-64-linux-gnu is already the newest version (14.2.0-19). cpp-14-x86-64-linux-gnu set to manually installed. libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-1). libxml2 set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). python3-pandas-lib is already the newest version (2.2.3+dfsg-9). python3-pandas-lib set to manually installed. python3-netcdf4 is already the newest version (1.7.2-1+b4). python3-netcdf4 set to manually installed. python3-pytest is already the newest version (8.3.5-2). python3-pytest set to manually installed. libnetcdf22 is already the newest version (1:4.9.3-1). libnetcdf22 set to manually installed. libuuid1 is already the newest version (2.41-5). ca-certificates is already the newest version (20250419). ca-certificates set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. libxcb1 is already the newest version (1.17.0-2+b1). libxcb1 set to manually installed. libdebhelper-perl is already the newest version (13.24.2). libdebhelper-perl set to manually installed. libaudit1 is already the newest version (1:4.0.5-1). dash is already the newest version (0.5.12-12). python3-zopfli is already the newest version (0.2.3.post1-1+b1). python3-zopfli set to manually installed. python3-dateutil is already the newest version (2.9.0-4). python3-dateutil set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1.1). libnghttp2-14 set to manually installed. libpam-modules is already the newest version (1.7.0-5). libwebpdemux2 is already the newest version (1.5.0-0.1). libwebpdemux2 set to manually installed. libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libatomic1 is already the newest version (14.2.0-19). libatomic1 set to manually installed. perl-base is already the newest version (5.40.1-5). libngtcp2-crypto-gnutls8 is already the newest version (1.11.0-1). libngtcp2-crypto-gnutls8 set to manually installed. sphinx-common is already the newest version (8.1.3-5). sphinx-common set to manually installed. libhwasan0 is already the newest version (14.2.0-19). libhwasan0 set to manually installed. libimagequant0 is already the newest version (2.18.0-1+b2). libimagequant0 set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.5-4). libjpeg62-turbo set to manually installed. libxxhash0 is already the newest version (0.8.3-2). libxxhash0 set to manually installed. libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. libxss1 is already the newest version (1:1.2.3-1+b3). libxss1 set to manually installed. libidn2-0 is already the newest version (2.3.8-2). libidn2-0 set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-1). libxdmcp6 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-5). perl-modules-5.40 set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. python3-pytz is already the newest version (2025.2-3). python3-pytz set to manually installed. python3-pybtex-docutils is already the newest version (1.0.2-1). python3-pybtex-docutils set to manually installed. python3-babel is already the newest version (2.17.0-1). python3-babel set to manually installed. libproc2-0 is already the newest version (2:4.0.4-8). libproc2-0 set to manually installed. openssl-provider-legacy is already the newest version (3.5.0-2). libffi8 is already the newest version (3.4.8-2). libffi8 set to manually installed. python3-charset-normalizer is already the newest version (3.4.2-1). python3-charset-normalizer set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. python3-mmtf is already the newest version (1.1.3-1). python3-mmtf set to manually installed. bsdextrautils is already the newest version (2.41-5). bsdextrautils set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b1). libxcb-shm0 set to manually installed. libfribidi0 is already the newest version (1.0.16-1). libfribidi0 set to manually installed. python3-monotonic is already the newest version (1.6-3). python3-monotonic set to manually installed. libxslt1.1 is already the newest version (1.1.35-1.2). libxslt1.1 set to manually installed. python3-fs is already the newest version (2.4.16-7). python3-fs set to manually installed. xfonts-encodings is already the newest version (1:1.0.4-2.2). xfonts-encodings set to manually installed. libngtcp2-16 is already the newest version (1.11.0-1). libngtcp2-16 set to manually installed. media-types is already the newest version (13.0.0). media-types set to manually installed. python3-sympy is already the newest version (1.13.3-5). python3-sympy set to manually installed. liblz4-1 is already the newest version (1.10.0-4). liblz4-1 set to manually installed. python3-iniconfig is already the newest version (1.1.1-2). python3-iniconfig set to manually installed. libaec0 is already the newest version (1.1.3-1+b1). libaec0 set to manually installed. libx11-6 is already the newest version (2:1.8.12-1). libx11-6 set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libcap2 is already the newest version (1:2.75-9). libgmp10 is already the newest version (2:6.3.0+dfsg-3). libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). libpython3-all-dev is already the newest version (3.13.5-1). libpython3-all-dev set to manually installed. libpam0g is already the newest version (1.7.0-5). ncurses-bin is already the newest version (6.5+20250216-2). python3-all is already the newest version (3.13.5-1). python3-all set to manually installed. libxrender1 is already the newest version (1:0.9.12-1). libxrender1 set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. python3-platformdirs is already the newest version (4.3.7-1). python3-platformdirs set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libnettle8t64 is already the newest version (3.10.1-1). libnettle8t64 set to manually installed. hostname is already the newest version (3.25). libsframe1 is already the newest version (2.44-3). libsframe1 set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. libcairo2 is already the newest version (1.18.4-1+b1). libcairo2 set to manually installed. python3-cycler is already the newest version (0.12.1-1). python3-cycler set to manually installed. python3-sphinx-sitemap is already the newest version (2.6.0-1). python3-sphinx-sitemap set to manually installed. python3-tqdm is already the newest version (4.67.1-5). python3-tqdm set to manually installed. python3-docutils is already the newest version (0.21.2+dfsg-2). python3-docutils set to manually installed. python3-sphinx is already the newest version (8.1.3-5). python3-sphinx set to manually installed. libgnutls30t64 is already the newest version (3.8.9-3). libgnutls30t64 set to manually installed. libgraphite2-3 is already the newest version (1.3.14-2+b1). libgraphite2-3 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-6). libwebpmux3 is already the newest version (1.5.0-0.1). libwebpmux3 set to manually installed. libgcc-s1 is already the newest version (14.2.0-19). libcap-ng0 is already the newest version (0.8.5-4+b1). dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. liblzma5 is already the newest version (5.8.1-1). python3-urllib3 is already the newest version (2.3.0-2). python3-urllib3 set to manually installed. libharfbuzz0b is already the newest version (10.2.0-1+b1). libharfbuzz0b set to manually installed. x11-common is already the newest version (1:7.7+24). x11-common set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libjs-mathjax is already the newest version (2.7.9+dfsg-1). libjs-mathjax set to manually installed. libopenjp2-7 is already the newest version (2.5.3-2). libopenjp2-7 set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). debianutils is already the newest version (5.23.1). libzstd1 is already the newest version (1.5.7+dfsg-1). libitm1 is already the newest version (14.2.0-19). libitm1 set to manually installed. gettext is already the newest version (0.23.1-2). gettext set to manually installed. python3-requests is already the newest version (2.32.3+dfsg-5). python3-requests set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. python3-packaging is already the newest version (25.0-1). python3-packaging set to manually installed. libpython3-dev is already the newest version (3.13.5-1). libpython3-dev set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.44-3). binutils-x86-64-linux-gnu set to manually installed. libquadmath0 is already the newest version (14.2.0-19). libquadmath0 set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. util-linux is already the newest version (2.41-5). python3-pyparsing is already the newest version (3.1.2-1). python3-pyparsing set to manually installed. python3-more-itertools is already the newest version (10.7.0-1). python3-more-itertools set to manually installed. libperl5.40 is already the newest version (5.40.1-5). libperl5.40 set to manually installed. libqhull-r8.0 is already the newest version (2020.2-6+b2). libqhull-r8.0 set to manually installed. libselinux1 is already the newest version (3.8.1-1). fonts-mathjax is already the newest version (2.7.9+dfsg-1). fonts-mathjax set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. python3.13 is already the newest version (3.13.5-2). python3.13 set to manually installed. python3.13-minimal is already the newest version (3.13.5-2). python3.13-minimal set to manually installed. fonts-dejavu-mono is already the newest version (2.37-8). fonts-dejavu-mono set to manually installed. libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. python3-sklearn is already the newest version (1.4.2+dfsg-8). python3-sklearn set to manually installed. libc6-dev is already the newest version (2.41-9). libc6-dev set to manually installed. procps is already the newest version (2:4.0.4-8). procps set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. libgfortran5 is already the newest version (14.2.0-19). libgfortran5 set to manually installed. python-babel-localedata is already the newest version (2.17.0-1). python-babel-localedata set to manually installed. python3-typeguard is already the newest version (4.4.2-1). python3-typeguard set to manually installed. autopoint is already the newest version (0.23.1-2). autopoint set to manually installed. debhelper is already the newest version (13.24.2). debhelper set to manually installed. python3-rlpycairo is already the newest version (0.3.0-3). python3-rlpycairo set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. python3-hypothesis is already the newest version (6.130.5-2). python3-hypothesis set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. python3-mpmath is already the newest version (1.3.0-1). python3-mpmath set to manually installed. python3-installer is already the newest version (0.7.0+dfsg1-3). python3-installer set to manually installed. libattr1 is already the newest version (1:2.5.2-3). python3-imagesize is already the newest version (1.4.1-1). python3-imagesize set to manually installed. libsystemd0 is already the newest version (257.7-1). libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. python3-markupsafe is already the newest version (2.1.5-1+b3). python3-markupsafe set to manually installed. python3-numpy-dev is already the newest version (1:2.2.4+ds-1). python3-numpy-dev set to manually installed. libgcrypt20 is already the newest version (1.11.0-7). libgcrypt20 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). libwebp7 is already the newest version (1.5.0-0.1). libwebp7 set to manually installed. libzopfli1 is already the newest version (1.0.3-3). libzopfli1 set to manually installed. libdebconfclient0 is already the newest version (0.279). python3-cftime is already the newest version (1.6.4-2). python3-cftime set to manually installed. libfreetype6 is already the newest version (2.13.3+dfsg-1). libfreetype6 set to manually installed. libblas3 is already the newest version (3.12.1-2). libblas3 set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:14.2.0-1). g++-x86-64-linux-gnu set to manually installed. libubsan1 is already the newest version (14.2.0-19). libubsan1 set to manually installed. gcc-14 is already the newest version (14.2.0-19). gcc-14 set to manually installed. python3-citeproc is already the newest version (0.8.2-1). python3-citeproc set to manually installed. liblsan0 is already the newest version (14.2.0-19). liblsan0 set to manually installed. libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3). libjs-underscore set to manually installed. libpixman-1-0 is already the newest version (0.44.0-3). libpixman-1-0 set to manually installed. python3.13-dev is already the newest version (3.13.5-2). python3.13-dev set to manually installed. libblkid1 is already the newest version (2.41-5). libgcc-14-dev is already the newest version (14.2.0-19). libgcc-14-dev set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. python3-threadpoolctl is already the newest version (3.1.0-1). python3-threadpoolctl set to manually installed. libtcl8.6 is already the newest version (8.6.16+dfsg-1). libtcl8.6 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). python3-fasteners is already the newest version (0.18-2). python3-fasteners set to manually installed. python3-freetype is already the newest version (2.5.1-1). python3-freetype set to manually installed. python3-h5py is already the newest version (3.13.0-1). python3-h5py set to manually installed. bsdutils is already the newest version (1:2.41-5). python3-defusedxml is already the newest version (0.7.1-3). python3-defusedxml set to manually installed. sed is already the newest version (4.9-2). python3-six is already the newest version (1.17.0-1). python3-six set to manually installed. libaudit-common is already the newest version (1:4.0.5-1). mawk is already the newest version (1.3.4.20250131-1). python3-matplotlib is already the newest version (3.10.1+dfsg1-4). python3-matplotlib set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.p5e_HdcQH2 (Reading database ... 44635 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.p5e_HdcQH2 I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.p5e_HdcQH2 I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.p5e_HdcQH2... I: success in 297.7021 seconds Downloading dependency 385 of 385: python3-matplotlib:amd64=3.10.1+dfsg1-4 env --chdir=/srv/rebuilderd/tmp/rebuilderdmNXBfa/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1752138477 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildE9tJLI/debrebuild.sbuildrc.lf7rh2X9ynCQ sbuild --build=amd64 --host=amd64 --no-source --no-arch-any --arch-all --chroot=/srv/rebuilderd/tmp/debrebuildE9tJLI/debrebuild.tar.eyzdyxu5pooI --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mdanalysis-2.9.0 /srv/rebuilderd/tmp/rebuilderdmNXBfa/inputs/mdanalysis_2.9.0-12.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3 (07 June 2025) on ionos17-amd64 +==============================================================================+ | mdanalysis 2.9.0-12 (amd64) Wed, 30 Jul 2025 21:41:49 +0000 | +==============================================================================+ Package: mdanalysis Version: 2.9.0-12 Source Version: 2.9.0-12 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: all I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/diskspace/rebuilderd_tmp/debrebuildE9tJLI/debrebuild.tar.eyzdyxu5pooI to /srv/rebuilderd/tmp/tmp.sbuild.9dYiJ5Yi3_... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Wed, 30 Jul 2025 21:42:07 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdmNXBfa/inputs/mdanalysis_2.9.0-12.dsc exists in /srv/rebuilderd/tmp/rebuilderdmNXBfa/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 30 Jul 2025 21:42:10 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cython3, dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-setuptools, python3-numpy, python3-biopython (>= 1.80), python3-networkx, python3-griddataformats, python3-mmtf, python3-joblib, python3-scipy, python3-matplotlib, python3-mda-xdrlib, python3-tqdm, python3-threadpoolctl, python3-packaging, python3-filelock, python3-fasteners, python3-gsd (>= 3.0.1~), python3-netcdf4, python3-h5py, python3-seaborn, python3-sklearn, python3-duecredit, python3-hypothesis, python3-pytest, python3-sphinx, build-essential, python3-msmb-theme, python3-pybtex, python3-sphinx-rtd-theme, python3-sphinx-sitemap, python3-sphinxcontrib.bibtex, libjs-mathjax Filtered Build-Depends: debhelper-compat (= 13), cython3, dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-setuptools, python3-numpy, python3-biopython (>= 1.80), python3-networkx, python3-griddataformats, python3-mmtf, python3-joblib, python3-scipy, python3-matplotlib, python3-mda-xdrlib, python3-tqdm, python3-threadpoolctl, python3-packaging, python3-filelock, python3-fasteners, python3-gsd (>= 3.0.1~), python3-netcdf4, python3-h5py, python3-seaborn, python3-sklearn, python3-duecredit, python3-hypothesis, python3-pytest, python3-sphinx, build-essential, python3-msmb-theme, python3-pybtex, python3-sphinx-rtd-theme, python3-sphinx-sitemap, python3-sphinxcontrib.bibtex, libjs-mathjax dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-ttBYyz/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Wed, 30 Jul 2025 21:42:17 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Wed, 30 Jul 2025 21:42:18 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.38+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.38-1 (2025-07-16) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.21 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.35-1 Package versions: autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 blt_2.5.3+dfsg-8 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-x86-64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-2+b1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debianutils_5.23.1 dh-autoreconf_20 dh-python_6.20250414 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 docutils-common_0.21.2+dfsg-2 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 file_1:5.46-5 findutils_4.10.0-3 fontconfig-config_2.15.0-2.3 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-lato_2.015-1 fonts-lyx_2.4.3-1 fonts-mathjax_2.7.9+dfsg-1 fonts-urw-base35_20200910-8 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libaec0_1.1.3-1+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.44-3 libblas3_3.12.1-2 libblkid1_2.41-5 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libcairo2_1.18.4-1+b1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcc1-0_14.2.0-19 libcom-err2_1.47.2-3+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.14.1-2 libcurl4t64_8.14.1-2 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdeflate0_1.23-2 libdpkg-perl_1.22.21 libelf1t64_0.192-4 libexpat1_2.7.1-1 libexpat1-dev_2.7.1-1 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libfontconfig1_2.15.0-2.3 libfontenc1_1:1.1.8-1+b2 libfreetype6_2.13.3+dfsg-1 libfribidi0_1.0.16-1 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-19 libglib2.0-0t64_2.84.3-1 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-3 libgomp1_14.2.0-19 libgpg-error0_1.51-4 libgprofng0_2.44-3 libgraphite2-3_1.3.14-2+b1 libgssapi-krb5-2_1.21.3-5 libharfbuzz0b_10.2.0-1+b1 libhdf5-310_1.14.5+repack-3 libhdf5-hl-310_1.14.5+repack-3 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libidn2-0_2.3.8-2 libimagequant0_2.18.0-1+b2 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-4 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-mathjax_2.7.9+dfsg-1 libjs-sphinxdoc_8.1.3-5 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-perl_4.10000-1 libk5crypto3_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5support0_1.21.3-5 liblapack3_3.12.1-2 liblastlog2-2_2.41-5 liblcms2-2_2.16-2 libldap2_2.6.10+dfsg-1 liblerc4_4.0.0+ds-5 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzf1_3.6-4+b3 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnetcdf22_1:4.9.3-1 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1.1 libnghttp3-9_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libopenjp2-7_2.5.3-2 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-5 libpipeline1_1.5.8-1 libpixman-1-0_0.44.0-3 libpng16-16t64_1.6.48-1 libproc2-0_2:4.0.4-8 libpsl5t64_0.21.2-1.1+b1 libpython3-all-dev_3.13.5-1 libpython3-dev_3.13.5-1 libpython3-stdlib_3.13.5-1 libpython3.13_3.13.5-2 libpython3.13-dev_3.13.5-2 libpython3.13-minimal_3.13.5-2 libpython3.13-stdlib_3.13.5-2 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zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Wed, 30 Jul 2025 21:42:18 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mdanalysis Binary: python3-mdanalysis, python-mdanalysis-doc Architecture: any all Version: 2.9.0-12 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://www.mdanalysis.org/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/mdanalysis Vcs-Git: https://salsa.debian.org/debichem-team/mdanalysis.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, python3-all, python3-hypothesis, python3-pytest, python3-sklearn Build-Depends: debhelper-compat (= 13), cython3, dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-setuptools, python3-numpy, python3-biopython (>= 1.80) [amd64 arm64 armel armhf i386 mips64el ppc64el riscv64 s390x], python3-networkx, python3-griddataformats, python3-mmtf, python3-joblib, python3-scipy, python3-matplotlib, python3-mda-xdrlib, python3-tqdm, python3-threadpoolctl, python3-packaging, python3-filelock, python3-fasteners, python3-gsd (>= 3.0.1~) [!s390x !hppa !m68k !powerpc !ppc64 !sparc64], python3-netcdf4, python3-h5py, python3-seaborn, python3-sklearn, python3-duecredit, python3-hypothesis , python3-pytest , python3-sphinx Build-Depends-Indep: python3-msmb-theme, python3-pybtex, python3-sphinx-rtd-theme, python3-sphinx-sitemap, python3-sphinxcontrib.bibtex, libjs-mathjax Package-List: python-mdanalysis-doc deb doc optional arch=all python3-mdanalysis deb python optional arch=any Checksums-Sha1: f2606c497528efce3e62fafbf7dc92d28d90d811 61025537 mdanalysis_2.9.0.orig.tar.gz 240d9e5287c77e6fc6708e2fadfd4b1d9185426a 13888 mdanalysis_2.9.0-12.debian.tar.xz Checksums-Sha256: 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for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1752138477 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -A dpkg-buildpackage: info: source package mdanalysis dpkg-buildpackage: info: source version 2.9.0-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-source: info: using options from mdanalysis-2.9.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mdanalysis-2.9.0' rm -f .duecredit.p rm -f package/MDAnalysis/authors.py rm -f package/MDAnalysis/analysis/encore/clustering/affinityprop.c \ package/MDAnalysis/analysis/encore/cutils.c \ package/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c \ package/MDAnalysis/coordinates/timestep.cpp \ package/MDAnalysis/lib/_augment.cpp \ package/MDAnalysis/lib/_cutil.cpp \ package/MDAnalysis/lib/c_distances.c \ package/MDAnalysis/lib/c_distances_openmp.c \ package/MDAnalysis/lib/formats/cython_util.c \ package/MDAnalysis/lib/formats/libdcd.c \ package/MDAnalysis/lib/formats/libmdaxdr.c \ package/MDAnalysis/lib/nsgrid.cpp \ package/MDAnalysis/lib/qcprot.c rm -rf package/MDAnalysis.egg-info rm -f testsuite/MDAnalysisTests/data/.*_offsets.npz testsuite/MDAnalysisTests/data/*/.*_offsets.npz rm -rf testsuite/.pytest_cache make[1]: Leaving directory '/build/reproducible-path/mdanalysis-2.9.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild dh_auto_build -i -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis * Building wheel... performance hint: MDAnalysis/lib/c_distances.pyx:275:5: Exception check on '_minimum_image_orthogonal' will always require the GIL to be acquired. Possible solutions: 1. Declare '_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_minimum_image_orthogonal' to allow an error code to be returned. performance hint: MDAnalysis/lib/c_distances.pyx:302:5: Exception check on '_minimum_image_triclinic' will always require the GIL to be acquired. Possible solutions: 1. Declare '_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_minimum_image_triclinic' to allow an error code to be returned. performance hint: MDAnalysis/lib/c_distances.pyx:390:37: Exception check after calling '__pyx_fuse_0_minimum_image_orthogonal' will always require the GIL to be acquired. Possible solutions: 1. Declare '__pyx_fuse_0_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '__pyx_fuse_0_minimum_image_orthogonal' to allow an error code to be returned. performance hint: MDAnalysis/lib/c_distances.pyx:390:37: Exception check after calling '__pyx_fuse_1_minimum_image_orthogonal' will always require the GIL to be acquired. Possible solutions: 1. Declare '__pyx_fuse_1_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '__pyx_fuse_1_minimum_image_orthogonal' to allow an error code to be returned. performance hint: MDAnalysis/lib/c_distances.pyx:414:36: Exception check after calling '__pyx_fuse_0_minimum_image_triclinic' will always require the GIL to be acquired. Possible solutions: 1. Declare '__pyx_fuse_0_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '__pyx_fuse_0_minimum_image_triclinic' to allow an error code to be returned. performance hint: MDAnalysis/lib/c_distances.pyx:414:36: Exception check after calling '__pyx_fuse_1_minimum_image_triclinic' will always require the GIL to be acquired. Possible solutions: 1. Declare '__pyx_fuse_1_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '__pyx_fuse_1_minimum_image_triclinic' to allow an error code to be returned. performance hint: MDAnalysis/lib/nsgrid.pyx:417:37: Exception check after calling 'coord2cellid' will always require the GIL to be acquired. Declare 'coord2cellid' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: MDAnalysis/lib/nsgrid.pyx:431:26: Exception check after calling 'coord2cellxyz' will always require the GIL to be acquired. Possible solutions: 1. Declare 'coord2cellxyz' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'coord2cellxyz' to allow an error code to be returned. performance hint: MDAnalysis/lib/nsgrid.pyx:559:34: Exception check after calling 'coord2cellxyz' will always require the GIL to be acquired. Possible solutions: 1. Declare 'coord2cellxyz' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'coord2cellxyz' to allow an error code to be returned. performance hint: MDAnalysis/lib/nsgrid.pyx:567:56: Exception check after calling 'cellxyz2cellid' will always require the GIL to be acquired. Declare 'cellxyz2cellid' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: MDAnalysis/lib/nsgrid.pyx:574:53: Exception check after calling 'calc_distsq' will always require the GIL to be acquired. Declare 'calc_distsq' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: MDAnalysis/lib/nsgrid.pyx:578:57: Exception check after calling 'add_neighbors' will always require the GIL to be acquired. Possible solutions: 1. Declare 'add_neighbors' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'add_neighbors' to allow an error code to be returned. Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. Compiling MDAnalysis/lib/formats/libdcd.pyx because it changed. Compiling MDAnalysis/lib/c_distances.pyx because it changed. Compiling MDAnalysis/lib/c_distances_openmp.pyx because it changed. Compiling MDAnalysis/lib/qcprot.pyx because it changed. Compiling MDAnalysis/lib/formats/libmdaxdr.pyx because it changed. Compiling MDAnalysis/lib/formats/cython_util.pyx because it changed. Compiling MDAnalysis/analysis/encore/cutils.pyx because it changed. Compiling MDAnalysis/analysis/encore/clustering/affinityprop.pyx because it changed. Compiling MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx because it changed. Compiling MDAnalysis/lib/_cutil.pyx because it changed. Compiling MDAnalysis/lib/_augment.pyx because it changed. Compiling MDAnalysis/lib/nsgrid.pyx because it changed. Compiling MDAnalysis/coordinates/timestep.pyx because it changed. [ 1/13] Cythonizing MDAnalysis/analysis/encore/clustering/affinityprop.pyx [ 2/13] Cythonizing MDAnalysis/analysis/encore/cutils.pyx [ 3/13] Cythonizing MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx [ 4/13] Cythonizing MDAnalysis/coordinates/timestep.pyx [ 5/13] Cythonizing MDAnalysis/lib/_augment.pyx [ 6/13] Cythonizing MDAnalysis/lib/_cutil.pyx [ 7/13] Cythonizing MDAnalysis/lib/c_distances.pyx [ 8/13] Cythonizing MDAnalysis/lib/c_distances_openmp.pyx [ 9/13] Cythonizing MDAnalysis/lib/formats/cython_util.pyx [10/13] Cythonizing MDAnalysis/lib/formats/libdcd.pyx [11/13] Cythonizing MDAnalysis/lib/formats/libmdaxdr.pyx [12/13] Cythonizing MDAnalysis/lib/nsgrid.pyx [13/13] Cythonizing MDAnalysis/lib/qcprot.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/authors.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/exceptions.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/due.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/version.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/units.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis creating build/lib.linux-x86_64-cpython-313/MDAnalysis/tests copying MDAnalysis/tests/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/tests copying MDAnalysis/tests/datafiles.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/tests creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/bat.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/pca.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/gnm.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/rms.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/distances.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/backends.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/align.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/results.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/rdf.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/polymer.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/psa.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/contacts.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/density.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/msd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis creating build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/GROParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/tables.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/guessers.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology creating build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/rotate.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/wrap.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/translate.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/nojump.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/fit.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations creating build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization copying MDAnalysis/visualization/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/_distopia.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/distances.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/log.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/correlations.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/transformations.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/util.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/mdamath.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib creating build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/RDKit.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters creating build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/memory.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/chain.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/null.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates creating build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/jmol.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/pymol.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/vmd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/charmm.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/gromacs.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections creating build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary creating build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser copying MDAnalysis/guesser/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser copying MDAnalysis/guesser/tables.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser copying MDAnalysis/guesser/default_guesser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser copying MDAnalysis/guesser/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser creating build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/selection.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/_get_readers.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/universe.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/topology.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/groups.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core copying MDAnalysis/core/accessors.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hole2 creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp copying MDAnalysis/analysis/dssp/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp copying MDAnalysis/analysis/dssp/dssp.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp copying MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering creating build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis copying MDAnalysis/lib/libmdanalysis/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include copying MDAnalysis/lib/include/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src copying MDAnalysis/lib/formats/src/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations copying MDAnalysis/lib/src/transformations/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source copying doc/sphinx/source/conf.py -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source running egg_info creating MDAnalysis.egg-info writing MDAnalysis.egg-info/PKG-INFO writing dependency_links to MDAnalysis.egg-info/dependency_links.txt writing requirements to MDAnalysis.egg-info/requires.txt writing top-level names to MDAnalysis.egg-info/top_level.txt writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/analysis/encore/clustering/include/ap.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MDAnalysis.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'doc/html/html' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data copying doc/README -> build/lib.linux-x86_64-cpython-313/doc copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/c_distances.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/c_distances.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/qcprot.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/include copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/include creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations copying doc/sphinx/Makefile -> build/lib.linux-x86_64-cpython-313/doc/sphinx copying doc/sphinx/source/index.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source copying doc/sphinx/source/references.bib -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images copying doc/sphinx/source/images/AnalysisBase_parallel.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images copying doc/sphinx/source/images/RSMD_plot.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images copying doc/sphinx/source/images/janin_demo_plot.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images copying doc/sphinx/source/images/janin_ref_plot.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images copying doc/sphinx/source/images/msd_demo_plot.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images copying doc/sphinx/source/images/parallelization_time.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images copying doc/sphinx/source/images/rama_demo_plot.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images copying doc/sphinx/source/images/rama_ref_plot.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/converters.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/coordinates_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/core_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/exceptions.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/guesser_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/lib_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/overview.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/references.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/selections.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/selections_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/topology.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/topology_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/trajectory_transformations.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/units.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/version.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/align.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/backends.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/bat.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/contacts.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/data.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/density.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/dielectric.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/diffusionmap.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/dihedrals.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/distances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/dssp.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/encore.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/gnm.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel_deprecated.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/helix_analysis.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/hole2.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/hydrogenbonds.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/leaflet.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/legacy_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/lineardensity.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/msd.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/nucleicacids.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/nuclinfo.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/parallelization.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/pca.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/polymer.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/psa.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/rdf.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/results.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/DMSParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/ExtendedPDBParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/FHIAIMSParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/GMSParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/GROParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/GSDParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/HoomdXMLParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/ITPParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/LAMMPSParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/MMTFParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/MinimalParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/PDBParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/PDBQTParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/PQRParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/PSFParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/TOPParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/TPRParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/TXYZParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/XYZParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/core.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/guessers.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/tables.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization copying doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization copying doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization copying doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization copying doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/distances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/log.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/util.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates copying doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules copying doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules copying doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules copying doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules copying doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary copying doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary copying doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary copying doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary copying doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary copying doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core copying doc/sphinx/source/documentation_pages/core/accessors.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core copying doc/sphinx/source/documentation_pages/core/groups.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core copying doc/sphinx/source/documentation_pages/core/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core copying doc/sphinx/source/documentation_pages/core/selection.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core copying doc/sphinx/source/documentation_pages/core/topology.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core copying doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core copying doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core copying doc/sphinx/source/documentation_pages/core/universe.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy copying doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/confdistmatrix.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/covariance.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/dimensionality_reduction.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats copying doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats copying doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats running build_ext building 'MDAnalysis.lib.formats.libdcd' extension creating build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats/include -I/usr/include/python3.13 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.o -std=c11 -O3 -funroll-loops -fsigned-zeros In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/formats/libdcd.c:1261: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.lib.c_distances' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/include -I/usr/include/python3.13 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.o -std=c11 -O3 -funroll-loops -fsigned-zeros In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/c_distances.c:1263: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.lib.c_distances_openmp' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPARALLEL -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/include -I/usr/include/python3.13 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c11 -O3 -funroll-loops -fsigned-zeros In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/c_distances_openmp.c:1272: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.o -L/usr/lib/x86_64-linux-gnu -lm -lgomp -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.cpython-313-x86_64-linux-gnu.so -fopenmp building 'MDAnalysis.lib.qcprot' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.o -std=c11 -O3 -funroll-loops -fsigned-zeros In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/qcprot.c:1255: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.lib._transformations' extension creating build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/transformations.o -std=c11 -O3 -funroll-loops -fsigned-zeros In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/src/transformations/transformations.c:73: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/transformations.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_transformations.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.lib.formats.libmdaxdr' extension creating build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/include/python3.13 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.o -std=c11 -O3 -funroll-loops -fsigned-zeros In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/formats/libmdaxdr.c:1282: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/include/python3.13 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/trr_seek.o -std=c11 -O3 -funroll-loops -fsigned-zeros x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/include/python3.13 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile.o -std=c11 -O3 -funroll-loops -fsigned-zeros x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/include/python3.13 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c11 -O3 -funroll-loops -fsigned-zeros x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/include/python3.13 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c11 -O3 -funroll-loops -fsigned-zeros x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/formats -I/usr/include/python3.13 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xtc_seek.o -std=c11 -O3 -funroll-loops -fsigned-zeros x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xtc_seek.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.lib.formats.cython_util' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.o -std=c11 -O3 -funroll-loops -fsigned-zeros In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/formats/cython_util.c:1272: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.cutils' extension creating build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.o -std=c11 -funroll-loops -fsigned-zeros -O3 In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/analysis/encore/cutils.c:1255: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension creating build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering creating build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c11 -funroll-loops -fsigned-zeros -O3 In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/analysis/encore/clustering/affinityprop.c:1261: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c11 -funroll-loops -fsigned-zeros -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension creating build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c11 -funroll-loops -fsigned-zeros -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c11 -funroll-loops -fsigned-zeros -O3 In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:1261: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.lib._cutil' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/include -I/usr/include/python3.13 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.o -O3 -funroll-loops -fsigned-zeros -std=c++11 In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/_cutil.cpp:1273: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.lib._augment' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.o -O3 -funroll-loops -fsigned-zeros -std=c++11 In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/lib/_augment.cpp:1268: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.lib.nsgrid' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.9.0/package/MDAnalysis/lib/include -I/usr/include/python3.13 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.o -O3 -funroll-loops -fsigned-zeros -std=c++11 x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.cpython-313-x86_64-linux-gnu.so building 'MDAnalysis.coordinates.timestep' extension creating build/temp.linux-x86_64-cpython-313/MDAnalysis/coordinates x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MDAnalysis/coordinates/timestep.cpp -o build/temp.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.o -O3 -funroll-loops -fsigned-zeros -std=c++11 In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from MDAnalysis/coordinates/timestep.cpp:1269: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MDAnalysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/authors.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/tests copying build/lib.linux-x86_64-cpython-313/MDAnalysis/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/tests copying build/lib.linux-x86_64-cpython-313/MDAnalysis/tests/datafiles.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/tests creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/bat.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/legacy copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/legacy copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/pca.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/gnm.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/rms.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/distances.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/backends.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/align.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2 copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hole2 copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/results.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/dssp copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/dssp copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp/dssp.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/dssp copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/dssp copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/rdf.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/polymer.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/clustering/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/clustering/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/psa.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/contacts.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/density.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/msd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data creating build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/GROParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tables.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/guessers.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology creating build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology creating build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/rotate.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/wrap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/translate.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/nojump.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/fit.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations creating build/bdist.linux-x86_64/wheel/MDAnalysis/visualization copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_distopia.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/libmdanalysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/libmdanalysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/libmdanalysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/distances.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/log.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/correlations.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_transformations.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/transformations.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/util.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/mdamath.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/exceptions.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/RDKit.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/due.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/version.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/memory.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/chain.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/null.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-313/MDAnalysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/jmol.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/pymol.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/vmd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/charmm.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/gromacs.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/units.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary creating build/bdist.linux-x86_64/wheel/MDAnalysis/guesser copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/tables.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/default_guesser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser creating build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/selection.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/_get_readers.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/universe.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topology.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/groups.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/accessors.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core creating build/bdist.linux-x86_64/wheel/doc copying build/lib.linux-x86_64-cpython-313/doc/README -> build/bdist.linux-x86_64/wheel/./doc creating build/bdist.linux-x86_64/wheel/doc/sphinx creating build/bdist.linux-x86_64/wheel/doc/sphinx/source copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/references.bib -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/conf.py -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/index.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/RSMD_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/msd_demo_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/janin_ref_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/janin_demo_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/AnalysisBase_parallel.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/rama_ref_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/parallelization_time.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/rama_demo_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/analysis creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/analysis/legacy copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/legacy copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/psa.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/leaflet.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/data.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/polymer.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/nuclinfo.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/results.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/distances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/dihedrals.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/rdf.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/contacts.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/confdistmatrix.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/covariance.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/dimensionality_reduction.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/parallelization.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/bat.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/dssp.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/nucleicacids.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/density.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel_deprecated.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/msd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hole2.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/diffusionmap.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/align.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/backends.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/pca.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/helix_analysis.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/gnm.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/dielectric.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/lineardensity.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hydrogenbonds.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/MMTFParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/LAMMPSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PQRParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PSFParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GSDParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GROParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/guessers.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/FHIAIMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/TOPParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/ITPParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/tables.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/HoomdXMLParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/ExtendedPDBParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/TXYZParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/XYZParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/TPRParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBQTParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/MinimalParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/DMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/references.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/exceptions.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/visualization copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/distances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/lib/formats copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib/formats copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib/formats copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/util.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/log.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/version.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/converters copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/overview.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/trajectory_transformations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/guesser_modules copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/auxiliary copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topology.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/groups.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/selection.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/universe.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/accessors.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/units.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages copying build/lib.linux-x86_64-cpython-313/doc/sphinx/Makefile -> build/bdist.linux-x86_64/wheel/./doc/sphinx running install_egg_info Copying MDAnalysis.egg-info to build/bdist.linux-x86_64/wheel/./MDAnalysis-2.9.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/mdanalysis-2.9.0.dist-info/WHEEL creating '/build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/.tmp-1oqe6wxh/mdanalysis-2.9.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MDAnalysis/__init__.py' adding 'MDAnalysis/authors.py' adding 'MDAnalysis/due.py' adding 'MDAnalysis/exceptions.py' adding 'MDAnalysis/units.py' adding 'MDAnalysis/version.py' adding 'MDAnalysis/analysis/__init__.py' adding 'MDAnalysis/analysis/align.py' adding 'MDAnalysis/analysis/atomicdistances.py' adding 'MDAnalysis/analysis/backends.py' adding 'MDAnalysis/analysis/base.py' adding 'MDAnalysis/analysis/bat.py' adding 'MDAnalysis/analysis/contacts.py' adding 'MDAnalysis/analysis/density.py' adding 'MDAnalysis/analysis/dielectric.py' adding 'MDAnalysis/analysis/diffusionmap.py' adding 'MDAnalysis/analysis/dihedrals.py' adding 'MDAnalysis/analysis/distances.py' adding 'MDAnalysis/analysis/gnm.py' adding 'MDAnalysis/analysis/helix_analysis.py' adding 'MDAnalysis/analysis/leaflet.py' adding 'MDAnalysis/analysis/lineardensity.py' adding 'MDAnalysis/analysis/msd.py' adding 'MDAnalysis/analysis/nucleicacids.py' adding 'MDAnalysis/analysis/nuclinfo.py' adding 'MDAnalysis/analysis/pca.py' adding 'MDAnalysis/analysis/polymer.py' adding 'MDAnalysis/analysis/psa.py' adding 'MDAnalysis/analysis/rdf.py' adding 'MDAnalysis/analysis/results.py' adding 'MDAnalysis/analysis/rms.py' adding 'MDAnalysis/analysis/waterdynamics.py' adding 'MDAnalysis/analysis/data/__init__.py' adding 'MDAnalysis/analysis/data/filenames.py' adding 'MDAnalysis/analysis/data/janin_ref_data.npy' adding 'MDAnalysis/analysis/data/rama_ref_data.npy' adding 'MDAnalysis/analysis/dssp/__init__.py' adding 'MDAnalysis/analysis/dssp/dssp.py' adding 'MDAnalysis/analysis/dssp/pydssp_numpy.py' adding 'MDAnalysis/analysis/encore/__init__.py' adding 'MDAnalysis/analysis/encore/bootstrap.py' adding 'MDAnalysis/analysis/encore/confdistmatrix.py' adding 'MDAnalysis/analysis/encore/covariance.py' adding 'MDAnalysis/analysis/encore/cutils.c' adding 'MDAnalysis/analysis/encore/cutils.cpython-313-x86_64-linux-gnu.so' adding 'MDAnalysis/analysis/encore/cutils.pyx' adding 'MDAnalysis/analysis/encore/similarity.py' adding 'MDAnalysis/analysis/encore/utils.py' adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py' adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py' adding 'MDAnalysis/analysis/encore/clustering/__init__.py' adding 'MDAnalysis/analysis/encore/clustering/affinityprop.c' adding 'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-313-x86_64-linux-gnu.so' adding 'MDAnalysis/analysis/encore/clustering/affinityprop.pyx' adding 'MDAnalysis/analysis/encore/clustering/cluster.py' adding 'MDAnalysis/analysis/encore/clustering/include/ap.h' adding 'MDAnalysis/analysis/encore/clustering/src/ap.c' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-313-x86_64-linux-gnu.so' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c' adding 'MDAnalysis/analysis/hbonds/__init__.py' adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py' adding 'MDAnalysis/analysis/hole2/__init__.py' adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py' adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py' adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py' adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py' adding 'MDAnalysis/analysis/legacy/__init__.py' adding 'MDAnalysis/analysis/legacy/x3dna.py' adding 'MDAnalysis/auxiliary/EDR.py' adding 'MDAnalysis/auxiliary/XVG.py' adding 'MDAnalysis/auxiliary/__init__.py' adding 'MDAnalysis/auxiliary/base.py' adding 'MDAnalysis/auxiliary/core.py' adding 'MDAnalysis/converters/OpenMM.py' adding 'MDAnalysis/converters/OpenMMParser.py' adding 'MDAnalysis/converters/ParmEd.py' adding 'MDAnalysis/converters/ParmEdParser.py' adding 'MDAnalysis/converters/RDKit.py' adding 'MDAnalysis/converters/RDKitParser.py' adding 'MDAnalysis/converters/__init__.py' adding 'MDAnalysis/converters/base.py' adding 'MDAnalysis/coordinates/CRD.py' adding 'MDAnalysis/coordinates/DCD.py' adding 'MDAnalysis/coordinates/DLPoly.py' adding 'MDAnalysis/coordinates/DMS.py' adding 'MDAnalysis/coordinates/FHIAIMS.py' adding 'MDAnalysis/coordinates/GMS.py' adding 'MDAnalysis/coordinates/GRO.py' adding 'MDAnalysis/coordinates/GSD.py' adding 'MDAnalysis/coordinates/H5MD.py' adding 'MDAnalysis/coordinates/INPCRD.py' adding 'MDAnalysis/coordinates/LAMMPS.py' adding 'MDAnalysis/coordinates/MMTF.py' adding 'MDAnalysis/coordinates/MOL2.py' adding 'MDAnalysis/coordinates/NAMDBIN.py' adding 'MDAnalysis/coordinates/PDB.py' adding 'MDAnalysis/coordinates/PDBQT.py' adding 'MDAnalysis/coordinates/PQR.py' adding 'MDAnalysis/coordinates/ParmEd.py' adding 'MDAnalysis/coordinates/TNG.py' adding 'MDAnalysis/coordinates/TRC.py' adding 'MDAnalysis/coordinates/TRJ.py' adding 'MDAnalysis/coordinates/TRR.py' adding 'MDAnalysis/coordinates/TRZ.py' adding 'MDAnalysis/coordinates/TXYZ.py' adding 'MDAnalysis/coordinates/XDR.py' adding 'MDAnalysis/coordinates/XTC.py' adding 'MDAnalysis/coordinates/XYZ.py' adding 'MDAnalysis/coordinates/__init__.py' adding 'MDAnalysis/coordinates/base.py' adding 'MDAnalysis/coordinates/chain.py' adding 'MDAnalysis/coordinates/chemfiles.py' adding 'MDAnalysis/coordinates/core.py' adding 'MDAnalysis/coordinates/memory.py' adding 'MDAnalysis/coordinates/null.py' adding 'MDAnalysis/coordinates/timestep.cpp' adding 'MDAnalysis/coordinates/timestep.cpython-313-x86_64-linux-gnu.so' adding 'MDAnalysis/coordinates/timestep.pxd' adding 'MDAnalysis/coordinates/timestep.pyx' adding 'MDAnalysis/core/__init__.py' adding 'MDAnalysis/core/_get_readers.py' adding 'MDAnalysis/core/accessors.py' adding 'MDAnalysis/core/groups.py' adding 'MDAnalysis/core/selection.py' adding 'MDAnalysis/core/topology.py' adding 'MDAnalysis/core/topologyattrs.py' adding 'MDAnalysis/core/topologyobjects.py' adding 'MDAnalysis/core/universe.py' adding 'MDAnalysis/guesser/__init__.py' adding 'MDAnalysis/guesser/base.py' adding 'MDAnalysis/guesser/default_guesser.py' adding 'MDAnalysis/guesser/tables.py' adding 'MDAnalysis/lib/NeighborSearch.py' adding 'MDAnalysis/lib/__init__.py' adding 'MDAnalysis/lib/_augment.cpp' adding 'MDAnalysis/lib/_augment.cpython-313-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/_augment.pyx' adding 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'doc/sphinx/source/documentation_pages/topology/ITPParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/LAMMPSParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/MMTFParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst' adding 'doc/sphinx/source/documentation_pages/topology/MinimalParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/PDBParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/PDBQTParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/PQRParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/PSFParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/TOPParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/TPRParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/TXYZParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/XYZParser.rst' adding 'doc/sphinx/source/documentation_pages/topology/base.rst' adding 'doc/sphinx/source/documentation_pages/topology/core.rst' adding 'doc/sphinx/source/documentation_pages/topology/guessers.rst' adding 'doc/sphinx/source/documentation_pages/topology/init.rst' adding 'doc/sphinx/source/documentation_pages/topology/tables.rst' adding 'doc/sphinx/source/documentation_pages/topology/tpr_util.rst' adding 'doc/sphinx/source/documentation_pages/transformations/base.rst' adding 'doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst' adding 'doc/sphinx/source/documentation_pages/transformations/fit.rst' adding 'doc/sphinx/source/documentation_pages/transformations/nojump.rst' adding 'doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst' adding 'doc/sphinx/source/documentation_pages/transformations/rotate.rst' adding 'doc/sphinx/source/documentation_pages/transformations/translate.rst' adding 'doc/sphinx/source/documentation_pages/transformations/wrap.rst' adding 'doc/sphinx/source/documentation_pages/visualization/streamlines.rst' adding 'doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst' adding 'doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png' adding 'doc/sphinx/source/documentation_pages/visualization/testing_streamline.png' adding 'doc/sphinx/source/images/AnalysisBase_parallel.png' adding 'doc/sphinx/source/images/RSMD_plot.png' adding 'doc/sphinx/source/images/janin_demo_plot.png' adding 'doc/sphinx/source/images/janin_ref_plot.png' adding 'doc/sphinx/source/images/msd_demo_plot.png' adding 'doc/sphinx/source/images/parallelization_time.png' adding 'doc/sphinx/source/images/rama_demo_plot.png' adding 'doc/sphinx/source/images/rama_ref_plot.png' adding 'mdanalysis-2.9.0.dist-info/licenses/AUTHORS' adding 'mdanalysis-2.9.0.dist-info/licenses/LICENSE' adding 'mdanalysis-2.9.0.dist-info/METADATA' adding 'mdanalysis-2.9.0.dist-info/WHEEL' adding 'mdanalysis-2.9.0.dist-info/top_level.txt' adding 'mdanalysis-2.9.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built mdanalysis-2.9.0-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/mdanalysis-2.9.0' PYTHONPATH=/build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build make html -C package/doc/sphinx/ BUILDDIR=/build/reproducible-path/mdanalysis-2.9.0/.pybuild # HTML generator make[2]: Entering directory '/build/reproducible-path/mdanalysis-2.9.0/package/doc/sphinx' sphinx-build -v -b html source /build/reproducible-path/mdanalysis-2.9.0/.pybuild/html Running Sphinx v8.1.3 loading translations [en]... locale_dir /build/reproducible-path/mdanalysis-2.9.0/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exist locale_dir 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WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'griddataformats' from https://mdanalysis.org/GridDataFormats/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'networkx' from https://networkx.org/documentation/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'parmed' from https://parmed.github.io/ParmEd/html/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'rdkit' from https://rdkit.org/docs/objects.inv ... loading intersphinx inventory 'waterdynamics' from https://www.mdanalysis.org/waterdynamics/objects.inv ... loading intersphinx inventory 'mdahole2' from https://www.mdanalysis.org/mdahole2/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to : HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'pathsimanalysis' from https://www.mdanalysis.org/PathSimAnalysis/objects.inv ... loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://www.mdanalysis.org/waterdynamics/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /waterdynamics/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://www.mdanalysis.org/mdahole2/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /mdahole2/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://www.mdanalysis.org/PathSimAnalysis/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /PathSimAnalysis/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.dask.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.dask.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) locale_dir /build/reproducible-path/mdanalysis-2.9.0/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exist building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 177 source files that are out of date updating environment: locale_dir /build/reproducible-path/mdanalysis-2.9.0/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exist [new config] 177 added, 0 changed, 0 removed reading sources... [ 1%] documentation_pages/analysis/align /usr/lib/python3/dist-packages/Bio/Application/__init__.py:39: BiopythonDeprecationWarning: The Bio.Application modules and modules relying on it have been deprecated. Due to the on going maintenance burden of keeping command line application wrappers up to date, we have decided to deprecate and eventually remove these modules. We instead now recommend building your command line and invoking it directly with the subprocess module. warnings.warn( Didn't find AlignTraj.reference_atoms in MDAnalysis.analysis.align Didn't find AlignTraj.mobile_atoms in MDAnalysis.analysis.align Didn't find AlignTraj.results.rmsd in MDAnalysis.analysis.align Didn't find AlignTraj.filename in MDAnalysis.analysis.align Didn't find AverageStructure.reference_atoms in MDAnalysis.analysis.align Didn't find AverageStructure.mobile_atoms in MDAnalysis.analysis.align Didn't find AverageStructure.results.universe in MDAnalysis.analysis.align Didn't find AverageStructure.results.positions in MDAnalysis.analysis.align Didn't find AverageStructure.results.rmsd in MDAnalysis.analysis.align Didn't find AverageStructure.filename in MDAnalysis.analysis.align reading sources... [ 1%] documentation_pages/analysis/atomicdistances Didn't find AtomicDistances.results in MDAnalysis.analysis.atomicdistances Didn't find AtomicDistances.n_frames in MDAnalysis.analysis.atomicdistances Didn't find AtomicDistances.n_atoms in MDAnalysis.analysis.atomicdistances reading sources... [ 2%] documentation_pages/analysis/backends reading sources... [ 2%] documentation_pages/analysis/base Didn't find AnalysisBase.times in MDAnalysis.analysis.base Didn't find AnalysisBase.frames in MDAnalysis.analysis.base Didn't find AnalysisBase.results in MDAnalysis.analysis.base Didn't find AnalysisFromFunction.results.frames in MDAnalysis.analysis.base Didn't find AnalysisFromFunction.results.times in MDAnalysis.analysis.base Didn't find AnalysisFromFunction.results.timeseries in MDAnalysis.analysis.base Didn't find results.frames in MDAnalysis.analysis.base Didn't find results.times in MDAnalysis.analysis.base Didn't find results.timeseries in MDAnalysis.analysis.base reading sources... [ 3%] documentation_pages/analysis/bat Didn't find BAT.results.bat in MDAnalysis.analysis.bat reading sources... [ 3%] documentation_pages/analysis/contacts Didn't find Contacts.results.timeseries in MDAnalysis.analysis.contacts Didn't find Contacts.n_initial_contacts in MDAnalysis.analysis.contacts Didn't find Contacts.r0 in MDAnalysis.analysis.contacts reading sources... [ 4%] documentation_pages/analysis/data reading sources... [ 5%] documentation_pages/analysis/density Didn't find DensityAnalysis.results.density in MDAnalysis.analysis.density Didn't find Density.grid in MDAnalysis.analysis.density Didn't find Density.edges in MDAnalysis.analysis.density Didn't find Density.delta in MDAnalysis.analysis.density Didn't find Density.origin in MDAnalysis.analysis.density Didn't find Density.units in MDAnalysis.analysis.density reading sources... [ 5%] documentation_pages/analysis/dielectric Didn't find DielectricConstant.results.M in MDAnalysis.analysis.dielectric Didn't find DielectricConstant.results.M2 in MDAnalysis.analysis.dielectric Didn't find DielectricConstant.results.fluct in MDAnalysis.analysis.dielectric Didn't find DielectricConstant.results.eps in MDAnalysis.analysis.dielectric Didn't find DielectricConstant.results.eps_mean in MDAnalysis.analysis.dielectric reading sources... [ 6%] documentation_pages/analysis/diffusionmap Didn't find DiffusionMap.eigenvalues in MDAnalysis.analysis.diffusionmap Didn't find DistanceMatrix.atoms in MDAnalysis.analysis.diffusionmap Didn't find DistanceMatrix.results.dist_matrix in MDAnalysis.analysis.diffusionmap reading sources... [ 6%] documentation_pages/analysis/dihedrals mkdir -p failed for path /sbuild-nonexistent/.config/matplotlib: [Errno 13] Permission denied: '/sbuild-nonexistent' Matplotlib created a temporary cache directory at /tmp/matplotlib-jml3f60q because there was an issue with the default path (/sbuild-nonexistent/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. Didn't find Dihedral.results.angles in MDAnalysis.analysis.dihedrals Didn't find Ramachandran.results.angles in MDAnalysis.analysis.dihedrals Didn't find Janin.results.angles in MDAnalysis.analysis.dihedrals reading sources... [ 7%] documentation_pages/analysis/distances reading sources... [ 7%] documentation_pages/analysis/dssp Didn't find DSSP.results.dssp in MDAnalysis.analysis.dssp.dssp Didn't find DSSP.results.dssp_ndarray in MDAnalysis.analysis.dssp.dssp Didn't find DSSP.results.resids in MDAnalysis.analysis.dssp.dssp reading sources... [ 8%] documentation_pages/analysis/encore reading sources... [ 8%] documentation_pages/analysis/encore/bootstrap /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/encore/__init__.py:45: DeprecationWarning: Deprecation in version 2.8.0 MDAnalysis.analysis.encore is deprecated in favour of the MDAKit mdaencore (https://www.mdanalysis.org/mdaencore/) and will be removed in MDAnalysis version 3.0.0. warnings.warn(wmsg, category=DeprecationWarning) reading sources... [ 9%] documentation_pages/analysis/encore/clustering Didn't find Cluster.id in MDAnalysis.analysis.encore.clustering.ClusterCollection Didn't find Cluster.metadata in MDAnalysis.analysis.encore.clustering.ClusterCollection Didn't find Cluster.size in MDAnalysis.analysis.encore.clustering.ClusterCollection Didn't find Cluster.centroid in MDAnalysis.analysis.encore.clustering.ClusterCollection Didn't find Cluster.elements in MDAnalysis.analysis.encore.clustering.ClusterCollection Didn't find ClusterCollection.clusters in MDAnalysis.analysis.encore.clustering.ClusterCollection reading sources... [ 10%] documentation_pages/analysis/encore/confdistmatrix reading sources... [ 10%] documentation_pages/analysis/encore/covariance reading sources... [ 11%] documentation_pages/analysis/encore/dimensionality_reduction reading sources... [ 11%] documentation_pages/analysis/encore/similarity reading sources... [ 12%] documentation_pages/analysis/encore/utils Didn't find ParallelCalculation.n_jobs in MDAnalysis.analysis.encore.utils Didn't find ParallelCalculation.function in MDAnalysis.analysis.encore.utils Didn't find ParallelCalculation.args in MDAnalysis.analysis.encore.utils Didn't find ParallelCalculation.kwargs in MDAnalysis.analysis.encore.utils Didn't find ParallelCalculation.nruns in MDAnalysis.analysis.encore.utils reading sources... [ 12%] documentation_pages/analysis/gnm Didn't find GNMAnalysis.results.times in MDAnalysis.analysis.gnm Didn't find GNMAnalysis.results.eigenvalues in MDAnalysis.analysis.gnm Didn't find GNMAnalysis.results.eigenvectors in MDAnalysis.analysis.gnm Didn't find closeContactGNMAnalysis.results.times in MDAnalysis.analysis.gnm Didn't find closeContactGNMAnalysis.results.eigenvalues in MDAnalysis.analysis.gnm Didn't find closeContactGNMAnalysis.results.eigenvectors in MDAnalysis.analysis.gnm reading sources... [ 13%] documentation_pages/analysis/hbond_autocorrel reading sources... [ 14%] documentation_pages/analysis/hbond_autocorrel_deprecated /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/hbonds/hbond_autocorrel.py:54: DeprecationWarning: This module was moved to MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel; hbonds.hbond_autocorrel will be removed in 3.0.0. warnings.warn(wmsg, category=DeprecationWarning) reading sources... [ 14%] documentation_pages/analysis/helix_analysis Didn't find HELANAL.results.local_twists in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.local_nres_per_turn in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.local_axes in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.local_heights in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.local_helix_directions in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.local_origins in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.local_screw_angles in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.local_bends in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.all_bends in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.global_axis in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.global_tilts in MDAnalysis.analysis.helix_analysis Didn't find HELANAL.results.summary in MDAnalysis.analysis.helix_analysis reading sources... [ 15%] documentation_pages/analysis/hole2 /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/hole2/__init__.py:50: UserWarning: Please install the mdahole2 mdakit to use it in MDAnalysis. More details can be found here: https://www.mdanalysis.org/mdahole2/getting_started.html warnings.warn(wmsg, category=UserWarning) reading sources... [ 15%] documentation_pages/analysis/hydrogenbonds Didn't find HydrogenBondAnalysis.results.hbonds in MDAnalysis.analysis.hydrogenbonds.hbond_analysis reading sources... [ 16%] documentation_pages/analysis/leaflet reading sources... [ 16%] documentation_pages/analysis/legacy/x3dna Didn't find X3DNA.profiles in MDAnalysis.analysis.legacy.x3dna Didn't find X3DNAtraj.profiles in MDAnalysis.analysis.legacy.x3dna reading sources... [ 17%] documentation_pages/analysis/legacy_modules reading sources... [ 18%] documentation_pages/analysis/lineardensity Didn't find LinearDensity.results.x.dim in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.mass_density in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.mass_density_stddev in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.charge_density in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.charge_density_stddev in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.pos in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.pos_std in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.char in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.char_std in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.slice_volume in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.results.x.hist_bin_edges in MDAnalysis.analysis.lineardensity Didn't find LinearDensity.Note in MDAnalysis.analysis.lineardensity reading sources... [ 18%] documentation_pages/analysis/msd Didn't find EinsteinMSD.dim_fac in MDAnalysis.analysis.msd Didn't find EinsteinMSD.results.timeseries in MDAnalysis.analysis.msd Didn't find EinsteinMSD.results.msds_by_particle in MDAnalysis.analysis.msd Didn't find EinsteinMSD.ag in MDAnalysis.analysis.msd Didn't find EinsteinMSD.n_frames in MDAnalysis.analysis.msd Didn't find EinsteinMSD.n_particles in MDAnalysis.analysis.msd reading sources... [ 19%] documentation_pages/analysis/nucleicacids Didn't find NucPairDist.results.pair_distances in MDAnalysis.analysis.nucleicacids Didn't find NucPairDist.results.distances in MDAnalysis.analysis.nucleicacids Didn't find NucPairDist.times in MDAnalysis.analysis.nucleicacids Didn't find WatsonCrickDist.results.distances in MDAnalysis.analysis.nucleicacids Didn't find WatsonCrickDist.results.pair_distances in MDAnalysis.analysis.nucleicacids Didn't find WatsonCrickDist.times in MDAnalysis.analysis.nucleicacids Didn't find MinorPairDist.results.distances in MDAnalysis.analysis.nucleicacids Didn't find MinorPairDist.times in MDAnalysis.analysis.nucleicacids Didn't find MajorPairDist.results.distances in MDAnalysis.analysis.nucleicacids Didn't find MajorPairDist.times in MDAnalysis.analysis.nucleicacids reading sources... [ 19%] documentation_pages/analysis/nuclinfo reading sources... [ 20%] documentation_pages/analysis/parallelization reading sources... [ 20%] documentation_pages/analysis/pca Didn't find PCA.results.p_components in MDAnalysis.analysis.pca Didn't find PCA.results.variance in MDAnalysis.analysis.pca Didn't find PCA.results.cumulated_variance in MDAnalysis.analysis.pca reading sources... [ 21%] documentation_pages/analysis/polymer Didn't find PersistenceLength.results.bond_autocorrelation in MDAnalysis.analysis.polymer Didn't find PersistenceLength.results.lb in MDAnalysis.analysis.polymer Didn't find PersistenceLength.results.x in MDAnalysis.analysis.polymer Didn't find PersistenceLength.results.lp in MDAnalysis.analysis.polymer Didn't find PersistenceLength.results.fit in MDAnalysis.analysis.polymer reading sources... [ 21%] documentation_pages/analysis/psa /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/psa.py:72: UserWarning: Please install the PathSimAnalysis mdakit to use it in MDAnalysis. More details can be found here: https://www.mdanalysis.org/PathSimAnalysis/getting_started.html warnings.warn(wmsg, category=UserWarning) reading sources... [ 22%] documentation_pages/analysis/rdf Didn't find InterRDF.results.bins in MDAnalysis.analysis.rdf Didn't find InterRDF.results.edges in MDAnalysis.analysis.rdf Didn't find InterRDF.results.rdf in MDAnalysis.analysis.rdf Didn't find InterRDF.results.count in MDAnalysis.analysis.rdf Didn't find InterRDF_s.results.bins in MDAnalysis.analysis.rdf Didn't find InterRDF_s.results.edges in MDAnalysis.analysis.rdf Didn't find InterRDF_s.results.rdf in MDAnalysis.analysis.rdf Didn't find InterRDF_s.results.count in MDAnalysis.analysis.rdf Didn't find InterRDF_s.results.cdf in MDAnalysis.analysis.rdf reading sources... [ 23%] documentation_pages/analysis/results reading sources... [ 23%] documentation_pages/analysis/rms Didn't find RMSD.results.rmsd in MDAnalysis.analysis.rms Didn't find RMSF.results.rmsf in MDAnalysis.analysis.rms reading sources... [ 24%] documentation_pages/analysis/waterdynamics /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/waterdynamics.py:57: UserWarning: Please install the waterdynamics mdakit to use it in MDAnalysis. More details can be found here: https://www.mdanalysis.org/waterdynamics/getting_started.html warnings.warn(wmsg, category=UserWarning) reading sources... [ 24%] documentation_pages/analysis/wbridge_analysis Didn't find WaterBridgeAnalysis.timesteps in MDAnalysis.analysis.hydrogenbonds.wbridge_analysis Didn't find WaterBridgeAnalysis.results.network in MDAnalysis.analysis.hydrogenbonds.wbridge_analysis Didn't find WaterBridgeAnalysis.table in MDAnalysis.analysis.hydrogenbonds.wbridge_analysis Didn't find WaterBridgeAnalysis.results.timeseries in MDAnalysis.analysis.hydrogenbonds.wbridge_analysis reading sources... [ 25%] documentation_pages/analysis_modules reading sources... [ 25%] documentation_pages/auxiliary/EDR Didn't find EDRReader._auxdata in MDAnalysis.auxiliary.EDR Didn't find EDRReader.data_dict in MDAnalysis.auxiliary.EDR Didn't find EDRReader.unit_dict in MDAnalysis.auxiliary.EDR Didn't find EDRReader._n_steps in MDAnalysis.auxiliary.EDR Didn't find EDRReader.terms in MDAnalysis.auxiliary.EDR reading sources... [ 26%] documentation_pages/auxiliary/XVG reading sources... [ 27%] documentation_pages/auxiliary/base Didn't find AuxStep.step in MDAnalysis.auxiliary.base Didn't find AuxReader.auxstep in MDAnalysis.auxiliary.base Didn't find AuxReader.frame_data in MDAnalysis.auxiliary.base Didn't find AuxReader.frame_rep in MDAnalysis.auxiliary.base Didn't find AuxFileReader.auxfile in MDAnalysis.auxiliary.base reading sources... [ 27%] documentation_pages/auxiliary/core reading sources... [ 28%] documentation_pages/auxiliary/init reading sources... [ 28%] documentation_pages/auxiliary_modules reading sources... [ 29%] documentation_pages/converters reading sources... [ 29%] documentation_pages/converters/OpenMM reading sources... [ 30%] documentation_pages/converters/ParmEd reading sources... [ 31%] documentation_pages/converters/RDKit reading sources... [ 31%] documentation_pages/converters/base reading sources... [ 32%] documentation_pages/coordinates/CRD reading sources... [ 32%] documentation_pages/coordinates/DCD reading sources... [ 33%] documentation_pages/coordinates/DLPoly reading sources... [ 33%] documentation_pages/coordinates/DMS reading sources... [ 34%] documentation_pages/coordinates/FHIAIMS reading sources... [ 34%] documentation_pages/coordinates/GMS reading sources... [ 35%] documentation_pages/coordinates/GRO reading sources... [ 36%] documentation_pages/coordinates/GSD reading sources... [ 36%] documentation_pages/coordinates/H5MD reading sources... [ 37%] documentation_pages/coordinates/INPCRD reading sources... [ 37%] documentation_pages/coordinates/LAMMPS reading sources... [ 38%] documentation_pages/coordinates/MMTF reading sources... [ 38%] documentation_pages/coordinates/MOL2 reading sources... [ 39%] documentation_pages/coordinates/NAMDBIN reading sources... [ 40%] documentation_pages/coordinates/PDB reading sources... [ 40%] documentation_pages/coordinates/PDBQT reading sources... [ 41%] documentation_pages/coordinates/PQR reading sources... [ 41%] documentation_pages/coordinates/TNG reading sources... [ 42%] documentation_pages/coordinates/TRC reading sources... [ 42%] documentation_pages/coordinates/TRJ reading sources... [ 43%] documentation_pages/coordinates/TRR reading sources... [ 44%] documentation_pages/coordinates/TRZ Didn't find TRZReader.ts in MDAnalysis.coordinates.TRZ reading sources... [ 44%] documentation_pages/coordinates/TXYZ reading sources... [ 45%] documentation_pages/coordinates/XDR reading sources... [ 45%] documentation_pages/coordinates/XTC reading sources... [ 46%] documentation_pages/coordinates/XYZ reading sources... [ 46%] documentation_pages/coordinates/base reading sources... [ 47%] documentation_pages/coordinates/chain reading sources... [ 47%] documentation_pages/coordinates/chemfiles reading sources... [ 48%] documentation_pages/coordinates/core reading sources... [ 49%] documentation_pages/coordinates/init reading sources... [ 49%] documentation_pages/coordinates/memory reading sources... [ 50%] documentation_pages/coordinates/null reading sources... [ 50%] documentation_pages/coordinates/pickle_readers reading sources... [ 51%] documentation_pages/coordinates/timestep reading sources... [ 51%] documentation_pages/coordinates_modules reading sources... [ 52%] documentation_pages/core/accessors reading sources... [ 53%] documentation_pages/core/groups reading sources... [ 53%] documentation_pages/core/init reading sources... [ 54%] documentation_pages/core/selection reading sources... [ 54%] documentation_pages/core/topology Didn't find TransTable.n_atoms in MDAnalysis.core.topology Didn't find TransTable.n_residues in MDAnalysis.core.topology Didn't find TransTable.n_segments in MDAnalysis.core.topology reading sources... [ 55%] documentation_pages/core/topologyattrs reading sources... [ 55%] documentation_pages/core/topologyobjects reading sources... [ 56%] documentation_pages/core/universe Didn't find Universe.atoms in MDAnalysis.core.universe Didn't find Universe.residues in MDAnalysis.core.universe Didn't find Universe.segments in MDAnalysis.core.universe reading sources... [ 56%] documentation_pages/core_modules reading sources... [ 57%] documentation_pages/exceptions reading sources... [ 58%] documentation_pages/guesser_modules reading sources... [ 58%] documentation_pages/guesser_modules/base reading sources... [ 59%] documentation_pages/guesser_modules/default_guesser reading sources... [ 59%] documentation_pages/guesser_modules/init reading sources... [ 60%] documentation_pages/guesser_modules/tables reading sources... [ 60%] documentation_pages/lib/NeighborSearch reading sources... [ 61%] documentation_pages/lib/c_distances reading sources... [ 62%] documentation_pages/lib/c_distances_openmp reading sources... [ 62%] documentation_pages/lib/correlations reading sources... [ 63%] documentation_pages/lib/distances reading sources... [ 63%] documentation_pages/lib/formats/libdcd reading sources... [ 64%] documentation_pages/lib/formats/libmdaxdr reading sources... [ 64%] documentation_pages/lib/log reading sources... [ 65%] documentation_pages/lib/mdamath reading sources... [ 66%] documentation_pages/lib/nsgrid reading sources... [ 66%] documentation_pages/lib/picklable_file_io reading sources... [ 67%] documentation_pages/lib/pkdtree reading sources... [ 67%] documentation_pages/lib/qcprot reading sources... [ 68%] documentation_pages/lib/transformations reading sources... [ 68%] documentation_pages/lib/util reading sources... [ 69%] documentation_pages/lib_modules reading sources... [ 69%] documentation_pages/overview reading sources... [ 70%] documentation_pages/references reading sources... [ 71%] documentation_pages/selections reading sources... [ 71%] documentation_pages/selections/base reading sources... 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[docutils] WARNING: autodoc: failed to import module 'utils' from module 'MDAnalysis.analysis.hole2'; the following exception was raised: No module named 'MDAnalysis.analysis.hole2.utils' [autodoc.import_object] WARNING: autodoc: failed to import module 'templates' from module 'MDAnalysis.analysis.hole2'; the following exception was raised: No module named 'MDAnalysis.analysis.hole2.templates' [autodoc.import_object] /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/core/universe.py:docstring of MDAnalysis.core.universe.Universe:127: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/core/universe.py:docstring of MDAnalysis.core.universe.Universe:127: WARNING: Inline strong start-string without end-string. [docutils] /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/guesser/default_guesser.py:docstring of MDAnalysis.guesser.default_guesser.DefaultGuesser:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/topology/ExtendedPDBParser.py:docstring of MDAnalysis.topology.ExtendedPDBParser.ExtendedPDBParser:29: CRITICAL: Unexpected section title. See Also -------- [docutils] /build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/topology/TPRParser.py:docstring of MDAnalysis.topology.TPRParser:46: WARNING: Footnote [*] is not referenced. [ref.footnote] docstring of MDAnalysis.topology.tables.atomelements:3: ERROR: Unexpected indentation. [docutils] docstring of MDAnalysis.topology.tables.atomelements:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] docstring of MDAnalysis.topology.tables.atomelements:7: ERROR: Unexpected indentation. [docutils] docstring of MDAnalysis.topology.tables.atomelements:8: WARNING: Inline strong start-string without end-string. [docutils] docstring of MDAnalysis.topology.tables.masses:3: ERROR: Unexpected indentation. [docutils] docstring of MDAnalysis.topology.tables.masses:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] docstring of MDAnalysis.topology.tables.masses:7: ERROR: Unexpected indentation. [docutils] docstring of MDAnalysis.topology.tables.masses:8: WARNING: Inline strong start-string without end-string. [docutils] docstring of MDAnalysis.topology.tables.vdwradii:3: ERROR: Unexpected indentation. [docutils] docstring of MDAnalysis.topology.tables.vdwradii:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] docstring of MDAnalysis.topology.tables.vdwradii:7: ERROR: Unexpected indentation. 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[ 60%] images/AnalysisBase_parallel.png copying images... [ 70%] images/parallelization_time.png copying images... [ 80%] images/RSMD_plot.png copying images... [ 90%] documentation_pages/visualization/testing_streamline.png copying images... [100%] documentation_pages/visualization/test_streamplot_3D.png dumping search index in English (code: en)... done dumping object inventory... done sphinx-sitemap: sitemap.xml was generated for URL https://docs.mdanalysis.org/ in /build/reproducible-path/mdanalysis-2.9.0/.pybuild/html/sitemap.xml build succeeded, 41 warnings. The HTML pages are in ../../../.pybuild/html. Build finished. The HTML pages are in /build/reproducible-path/mdanalysis-2.9.0/.pybuild/html. make[2]: Leaving directory '/build/reproducible-path/mdanalysis-2.9.0/package/doc/sphinx' make[1]: Leaving directory '/build/reproducible-path/mdanalysis-2.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -i -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-mdanalysis-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild E: dh_python3 dh_python3:198: no package to act on (python3-foo or one with ${python3:Depends} in Depends) debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/mdanalysis-2.9.0' dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. rm -rf debian/python3-mdanalysis/usr/lib/python3.* make[1]: Leaving directory '/build/reproducible-path/mdanalysis-2.9.0' dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-mdanalysis-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'python-mdanalysis-doc' in '../python-mdanalysis-doc_2.9.0-12_all.deb'. dpkg-genbuildinfo --build=all -O../mdanalysis_2.9.0-12_all.buildinfo dpkg-genchanges --build=all -O../mdanalysis_2.9.0-12_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-source: info: using options from mdanalysis-2.9.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-07-30T21:48:39Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 30 Jul 2025 21:48:40 +0000 | +------------------------------------------------------------------------------+ mdanalysis_2.9.0-12_all.changes: -------------------------------- Format: 1.8 Date: Thu, 10 Jul 2025 11:07:57 +0200 Source: mdanalysis Binary: python-mdanalysis-doc Architecture: all Version: 2.9.0-12 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python-mdanalysis-doc - analyse molecular dynamics files and trajectories ( documentation Changes: mdanalysis (2.9.0-12) unstable; urgency=medium . * skip all tests, both build-time and run-time. See Bug#1108309. Checksums-Sha1: 4abfaa058e1178471528515cd1df3bed5c3ce75f 12080 mdanalysis_2.9.0-12_all.buildinfo 7ff24635221a3cfdf1f9a86506390d0fc04e6180 3504192 python-mdanalysis-doc_2.9.0-12_all.deb Checksums-Sha256: e0738966645b2c77b2bb1a8dcaf4b55ae16dfa1915ca6a73b7b7f0fc707dc095 12080 mdanalysis_2.9.0-12_all.buildinfo 8fd5a8cb765d316a154db587a670893c6f3eacdd7128f82c5e440ae6fd8a4854 3504192 python-mdanalysis-doc_2.9.0-12_all.deb Files: bf896d4215d50e4508b30a5aef75c677 12080 python optional mdanalysis_2.9.0-12_all.buildinfo 05414906c9ca4b11fe7771d15aa650e3 3504192 doc optional python-mdanalysis-doc_2.9.0-12_all.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 30 Jul 2025 21:48:41 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mdanalysis Binary: python-mdanalysis-doc Architecture: all Version: 2.9.0-12 Checksums-Md5: 05414906c9ca4b11fe7771d15aa650e3 3504192 python-mdanalysis-doc_2.9.0-12_all.deb Checksums-Sha1: 7ff24635221a3cfdf1f9a86506390d0fc04e6180 3504192 python-mdanalysis-doc_2.9.0-12_all.deb Checksums-Sha256: 8fd5a8cb765d316a154db587a670893c6f3eacdd7128f82c5e440ae6fd8a4854 3504192 python-mdanalysis-doc_2.9.0-12_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 30 Jul 2025 21:48:38 +0000 Build-Path: /build/reproducible-path/mdanalysis-2.9.0 Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), blt (= 2.5.3+dfsg-8), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20250419), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), cython3 (= 3.0.11+dfsg-2+b1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-python (= 6.20250414), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), docutils-common (= 0.21.2+dfsg-2), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-2.3), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-lato (= 2.015-1), fonts-lyx (= 2.4.3-1), fonts-mathjax (= 2.7.9+dfsg-1), fonts-urw-base35 (= 20200910-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libaec0 (= 1.1.3-1+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.44-3), libblas3 (= 3.12.1-2), libblkid1 (= 2.41-5), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcairo2 (= 1.18.4-1+b1), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcc1-0 (= 14.2.0-19), libcom-err2 (= 1.47.2-3+b1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcurl3t64-gnutls (= 8.14.1-2), libcurl4t64 (= 8.14.1-2), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.192-4), libexpat1 (= 2.7.1-1), libexpat1-dev (= 2.7.1-1), libffi8 (= 3.4.8-2), libfile-stripnondeterminism-perl (= 1.14.1-2), libfontconfig1 (= 2.15.0-2.3), libfontenc1 (= 1:1.1.8-1+b2), libfreetype6 (= 2.13.3+dfsg-1), libfribidi0 (= 1.0.16-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgcrypt20 (= 1.11.0-7), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran5 (= 14.2.0-19), libglib2.0-0t64 (= 2.84.3-1), libgmp10 (= 2:6.3.0+dfsg-3), libgnutls30t64 (= 3.8.9-3), libgomp1 (= 14.2.0-19), libgpg-error0 (= 1.51-4), libgprofng0 (= 2.44-3), libgraphite2-3 (= 1.3.14-2+b1), libgssapi-krb5-2 (= 1.21.3-5), libharfbuzz0b (= 10.2.0-1+b1), libhdf5-310 (= 1.14.5+repack-3), libhdf5-hl-310 (= 1.14.5+repack-3), libhogweed6t64 (= 3.10.1-1), libhwasan0 (= 14.2.0-19), libidn2-0 (= 2.3.8-2), libimagequant0 (= 2.18.0-1+b2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libjbig0 (= 2.1-6.1+b2), libjpeg62-turbo (= 1:2.1.5-4), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-sphinxdoc (= 8.1.3-5), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libjson-perl (= 4.10000-1), libk5crypto3 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblapack3 (= 3.12.1-2), liblastlog2-2 (= 2.41-5), liblcms2-2 (= 2.16-2), libldap2 (= 2.6.10+dfsg-1), liblerc4 (= 4.0.0+ds-5), liblsan0 (= 14.2.0-19), liblz4-1 (= 1.10.0-4), liblzf1 (= 3.6-4+b3), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libnetcdf22 (= 1:4.9.3-1), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1.1), libnghttp3-9 (= 1.8.0-1), libngtcp2-16 (= 1.11.0-1), libngtcp2-crypto-gnutls8 (= 1.11.0-1), libopenjp2-7 (= 2.5.3-2), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-5), libpipeline1 (= 1.5.8-1), libpixman-1-0 (= 0.44.0-3), libpng16-16t64 (= 1.6.48-1), libproc2-0 (= 2:4.0.4-8), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-all-dev (= 3.13.5-1), libpython3-dev (= 3.13.5-1), libpython3-stdlib (= 3.13.5-1), libpython3.13 (= 3.13.5-2), libpython3.13-dev (= 3.13.5-2), libpython3.13-minimal (= 3.13.5-2), libpython3.13-stdlib (= 3.13.5-2), libqhull-r8.0 (= 2020.2-6+b2), libquadmath0 (= 14.2.0-19), libraqm0 (= 0.10.2-1), libreadline8t64 (= 8.2-6), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsharpyuv0 (= 1.5.0-0.1), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.7-1), libsz2 (= 1.1.3-1+b1), libtasn1-6 (= 4.20.0-2), libtcl8.6 (= 8.6.16+dfsg-1), libtiff6 (= 4.7.0-3), libtinfo6 (= 6.5+20250216-2), libtk8.6 (= 8.6.16-1), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libwebp7 (= 1.5.0-0.1), libwebpdemux2 (= 1.5.0-0.1), libwebpmux3 (= 1.5.0-0.1), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libxau6 (= 1:1.0.11-1), libxcb-render0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxdmcp6 (= 1:1.1.5-1), libxext6 (= 2:1.3.4-1+b3), libxft2 (= 2.3.6-1+b4), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libxrender1 (= 1:0.9.12-1), libxslt1.1 (= 1.1.35-1.2), libxss1 (= 1:1.2.3-1+b3), libxxhash0 (= 0.8.3-2), libyaml-0-2 (= 0.2.5-2), libzopfli1 (= 1.0.3-3), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.35-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 13.0.0), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl (= 3.5.0-2), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-5), perl-base (= 5.40.1-5), perl-modules-5.40 (= 5.40.1-5), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-8), pybuild-plugin-pyproject (= 6.20250414), python-babel-localedata (= 2.17.0-1), python-matplotlib-data (= 3.10.1+dfsg1-4), python3 (= 3.13.5-1), python3-alabaster (= 0.7.16-0.1), python3-all (= 3.13.5-1), python3-all-dev (= 3.13.5-1), python3-attr (= 25.3.0-1), python3-autocommand (= 2.2.2-3), python3-babel (= 2.17.0-1), python3-biopython (= 1.85+dfsg-4), python3-brotli (= 1.1.0-2+b7), python3-build (= 1.2.2-2), python3-cairo (= 1.27.0-2), python3-certifi (= 2025.1.31+ds-1), python3-cftime (= 1.6.4-2), python3-chardet (= 5.2.0+dfsg-2), python3-charset-normalizer (= 3.4.2-1), python3-citeproc (= 0.8.2-1), python3-contourpy (= 1.3.1-1+b1), python3-cycler (= 0.12.1-1), python3-dateutil (= 2.9.0-4), python3-decorator (= 5.2.1-2), python3-defusedxml (= 0.7.1-3), python3-dev (= 3.13.5-1), python3-docutils (= 0.21.2+dfsg-2), python3-duecredit (= 0.10.2-2), python3-fasteners (= 0.18-2), python3-filelock (= 3.18.0-1), python3-fonttools (= 4.57.0-1), python3-freetype (= 2.5.1-1), python3-fs (= 2.4.16-7), python3-griddataformats (= 1.0.2-2), python3-gsd (= 3.4.2-2+b1), python3-h5py (= 3.13.0-1), python3-h5py-serial (= 3.13.0-1+b1), python3-hypothesis (= 6.130.5-2), python3-idna (= 3.10-1), python3-imagesize (= 1.4.1-1), python3-inflect (= 7.3.1-2), python3-iniconfig (= 1.1.1-2), python3-installer (= 0.7.0+dfsg1-3), python3-jaraco.context (= 6.0.1-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-jinja2 (= 3.1.6-1), python3-joblib (= 1.4.2-4), python3-kiwisolver (= 1.4.7-3+b1), python3-latexcodec (= 3.0.0-1), python3-looseversion (= 1.3.0-3), python3-lxml (= 5.4.0-1), python3-lz4 (= 4.4.0+dfsg-2), python3-markupsafe (= 2.1.5-1+b3), python3-matplotlib (= 3.10.1+dfsg1-4), python3-mda-xdrlib (= 0.2.0-3), python3-minimal (= 3.13.5-1), python3-mmtf (= 1.1.3-1), python3-monotonic (= 1.6-3), python3-more-itertools (= 10.7.0-1), python3-mpmath (= 1.3.0-1), python3-mrcfile (= 1.5.4-2), python3-msgpack (= 1.0.3-3+b4), python3-msmb-theme (= 1.2.0-4), python3-netcdf4 (= 1.7.2-1+b4), python3-networkx (= 3.2.1-5), python3-numpy (= 1:2.2.4+ds-1), python3-numpy-dev (= 1:2.2.4+ds-1), python3-packaging (= 25.0-1), python3-pandas (= 2.2.3+dfsg-9), python3-pandas-lib (= 2.2.3+dfsg-9), python3-pil (= 11.1.0-5+b1), python3-pil.imagetk (= 11.1.0-5+b1), python3-pkg-resources (= 78.1.1-0.1), python3-platformdirs (= 4.3.7-1), python3-pluggy (= 1.5.0-1), python3-pybtex (= 0.24.0-4), python3-pybtex-docutils (= 1.0.2-1), python3-pygments (= 2.18.0+dfsg-2), python3-pyparsing (= 3.1.2-1), python3-pyproject-hooks (= 1.2.0-1), python3-pytest (= 8.3.5-2), python3-pytz (= 2025.2-3), python3-reportlab (= 4.3.1-1), python3-requests (= 2.32.3+dfsg-5), python3-rlpycairo (= 0.3.0-3), python3-roman (= 5.0-1), python3-scipy (= 1.15.3-1), python3-seaborn (= 0.13.2-5), python3-setuptools (= 78.1.1-0.1), python3-six (= 1.17.0-1), python3-sklearn (= 1.4.2+dfsg-8), python3-sklearn-lib (= 1.4.2+dfsg-8), python3-snowballstemmer (= 2.2.0-4), python3-sortedcontainers (= 2.4.0-2), python3-sphinx (= 8.1.3-5), python3-sphinx-rtd-theme (= 3.0.2+dfsg-3), python3-sphinx-sitemap (= 2.6.0-1), python3-sphinxcontrib.bibtex (= 2.6.2-1), python3-sphinxcontrib.jquery (= 4.1-5), python3-sympy (= 1.13.3-5), python3-threadpoolctl (= 3.1.0-1), python3-tk (= 3.13.4-1), python3-tqdm (= 4.67.1-5), python3-typeguard (= 4.4.2-1), python3-typing-extensions (= 4.13.2-1), python3-ufolib2 (= 0.17.1+dfsg1-1), python3-urllib3 (= 2.3.0-2), python3-wheel (= 0.46.1-2), python3-yaml (= 6.0.2-1+b2), python3-zipp (= 3.21.0-1), python3-zopfli (= 0.2.3.post1-1+b1), python3.13 (= 3.13.5-2), python3.13-dev (= 3.13.5-2), python3.13-minimal (= 3.13.5-2), python3.13-tk (= 3.13.5-2), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sgml-base (= 1.31+nmu1), sphinx-common (= 8.1.3-5), sphinx-rtd-theme-common (= 3.0.2+dfsg-3), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tk8.6-blt2.5 (= 2.5.3+dfsg-8), tzdata (= 2025b-4), unicode-data (= 15.1.0-1), util-linux (= 2.41-5), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+24), xfonts-encodings (= 1:1.0.4-2.2), xfonts-utils (= 1:7.7+7), xml-core (= 0.19), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1752138477" +------------------------------------------------------------------------------+ | Package contents Wed, 30 Jul 2025 21:48:42 +0000 | +------------------------------------------------------------------------------+ python-mdanalysis-doc_2.9.0-12_all.deb -------------------------------------- new Debian package, version 2.0. size 3504192 bytes: control archive=14052 bytes. 1596 bytes, 36 lines control 64485 bytes, 531 lines md5sums Package: python-mdanalysis-doc Source: mdanalysis Version: 2.9.0-12 Architecture: all Maintainer: Debichem Team Installed-Size: 23571 Depends: libjs-mathjax, libjs-sphinxdoc (>= 8.1) Section: doc Priority: optional Multi-Arch: foreign Homepage: https://www.mdanalysis.org/ Description: analyse molecular dynamics files and trajectories ( documentation) MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists. . MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. . It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others — see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module. . The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS. . 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2025-07-10 09:07 ./usr/share/doc/python-mdanalysis-doc/html/sitemap.xml.gz +------------------------------------------------------------------------------+ | Post Build Wed, 30 Jul 2025 21:48:43 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 30 Jul 2025 21:48:43 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 30 Jul 2025 21:48:49 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: all Build-Space: 343092 Build-Time: 374 Distribution: unstable Host Architecture: amd64 Install-Time: 7 Job: /srv/rebuilderd/tmp/rebuilderdmNXBfa/inputs/mdanalysis_2.9.0-12.dsc Machine Architecture: amd64 Package: mdanalysis Package-Time: 410 Source-Version: 2.9.0-12 Space: 343092 Status: successful Version: 2.9.0-12 -------------------------------------------------------------------------------- Finished at 2025-07-30T21:48:39Z Build needed 00:06:50, 343092k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdmNXBfa/out checking python-mdanalysis-doc_2.9.0-12_all.deb: size differs for python-mdanalysis-doc_2.9.0-12_all.deb