--- /srv/rebuilderd/tmp/rebuilderdU1mhWH/inputs/seqan3-doc_3.4.0+ds-1_all.deb +++ /srv/rebuilderd/tmp/rebuilderdU1mhWH/out/seqan3-doc_3.4.0+ds-1_all.deb ├── file list │ @@ -1,3 +1,3 @@ │ -rw-r--r-- 0 0 0 4 2025-09-09 09:29:41.000000 debian-binary │ --rw-r--r-- 0 0 0 80112 2025-09-09 09:29:41.000000 control.tar.xz │ --rw-r--r-- 0 0 0 2664780 2025-09-09 09:29:41.000000 data.tar.xz │ +-rw-r--r-- 0 0 0 79968 2025-09-09 09:29:41.000000 control.tar.xz │ +-rw-r--r-- 0 0 0 2653308 2025-09-09 09:29:41.000000 data.tar.xz ├── control.tar.xz │ ├── control.tar │ │ ├── file list │ │ │ @@ -1,3 +1,3 @@ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2025-09-09 09:29:41.000000 ./ │ │ │ -rw-r--r-- 0 root (0) root (0) 861 2025-09-09 09:29:41.000000 ./control │ │ │ --rw-r--r-- 0 root (0) root (0) 371071 2025-09-09 09:29:41.000000 ./md5sums │ │ │ +-rw-r--r-- 0 root (0) root (0) 370801 2025-09-09 09:29:41.000000 ./md5sums │ │ ├── ./control │ │ │ @@ -1,13 +1,13 @@ │ │ │ Package: seqan3-doc │ │ │ Source: seqan3 │ │ │ Version: 3.4.0+ds-1 │ │ │ Architecture: all │ │ │ Maintainer: Debian Med Packaging Team │ │ │ -Installed-Size: 52569 │ │ │ +Installed-Size: 52017 │ │ │ Depends: doxygen-awesome-css │ │ │ Suggests: libseqan3-dev │ │ │ Section: doc │ │ │ Priority: optional │ │ │ Multi-Arch: foreign │ │ │ Homepage: https://www.seqan.de/ │ │ │ Description: C++ library for the analysis of biological sequences v3 (documentation) │ │ ├── ./md5sums │ │ │ ├── ./md5sums │ │ │ │┄ Files differ │ │ │ ├── line order │ │ │ │ @@ -1096,16 +1096,14 @@ │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000051_000086.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000052_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000052_000087.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000052_000097.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000053_000016.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000053_000029.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000053_000034.html │ │ │ │ -usr/share/doc/libseqan3-dev/html/dir_000053_000063.html │ │ │ │ -usr/share/doc/libseqan3-dev/html/dir_000053_000097.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000054_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000055_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000056_000094.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000057_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000059_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000061_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000061_000097.html │ │ │ │ @@ -1161,15 +1159,14 @@ │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000081_000027.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000081_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000081_000097.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000082_000016.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000082_000029.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000082_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000082_000053.html │ │ │ │ -usr/share/doc/libseqan3-dev/html/dir_000082_000061.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000082_000063.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000082_000097.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000084_000016.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000084_000034.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000084_000049.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000084_000080.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000084_000086.html ├── data.tar.xz │ ├── data.tar │ │ ├── file list │ │ │ @@ -9,36 +9,36 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 6404 2025-09-09 09:29:41.000000 ./usr/share/doc/libseqan3-dev/html/aa10murphy_8hpp.html │ │ │ -rw-r--r-- 0 root (0) root (0) 39848 2025-09-09 09:29:41.000000 ./usr/share/doc/libseqan3-dev/html/aa10murphy_8hpp_source.html │ │ │ -rw-r--r-- 0 root (0) root (0) 6374 2025-09-09 09:29:41.000000 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root (0) 0 2025-09-09 09:29:41.000000 ./usr/share/doc/seqan3-doc/ │ │ │ -rw-r--r-- 0 root (0) root (0) 3820 2025-09-09 09:29:41.000000 ./usr/share/doc/seqan3-doc/changelog.Debian.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 15747 2025-08-29 15:23:54.000000 ./usr/share/doc/seqan3-doc/changelog.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 4976 2025-09-09 09:29:41.000000 ./usr/share/doc/seqan3-doc/copyright │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2025-09-09 09:29:41.000000 ./usr/share/doc-base/ │ │ ├── ./usr/share/doc/libseqan3-dev/html/about_api.html │ │ │ @@ -119,17 +119,17 @@ │ │ │ │ │ │
│ │ │
Stability and long-term promises
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Table of Contents

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SeqAn3 adheres to semantic versioning and provides a stable API within one major release (all of seqan-3.*.*) unless otherwise noted.

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There is no ABI stability.

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Many of the rules on this page are derived from the abseil library.

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│ │ │ API stability

│ │ │ @@ -153,15 +153,15 @@ │ │ │

In the very rare case that we feel a breaking change to the API is unavoidable, we promise to provide the following update path:

    │ │ │
  • A new minor version is introduced that supports the new API.
    • │ │ │
  • The old API is still supported, but might be marked [[deprecated]].
    • │ │ │
  • We provide very extensive documentation on the change or an automated tool that converts your code from using the old API to using the new API.
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  • The next (or another future) minor version removes the old API.
    • │ │ │
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Warning
As a special case of point 2, the entire 3.0.* release is not stable. We will do our best not to break things, but similar to the releases of GCC, we start labelling entities as stable starting from seqan-3.1.0. Please refer to the documentation of the individual entities for their stability status.
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│ │ │ ABI stability

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No guarantees of any kind are provided in regard to the in-memory representation of our data structures. We intend for SeqAn to be built from source. The internal layout of our types may change at any point, without notice. In particular, building SeqAn in the presence of different C++ standard library types may change SeqAn types, especially for pre-adopted types in the std module — these will resolve to standard library types as of C++20.

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We do promise, however, that SeqAn3 data structures¹ serialised to disk are de-serialisable by later versions of SeqAn3. The reverse is not true, however, and re-serialising a data structure serialised by a previous release might result in a different (updated) on-disk format.

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¹ Iff they are API stable.

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│ │ │ Platform stability

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The main requirement for SeqAn3 is that your operating system provides one of the compilers supported by us. In general, we only support the latest three major compiler versions. We currently support the following compilers on 64-bit operating systems with little-endian CPU architectures:

    │ │ │ @@ -191,15 +191,15 @@ │ │ │ │ │ │ FreeBSD the latest stable release │ │ │ │ │ │

    "Support" in this context does not imply that we package SeqAn for these operating systems (although we do in some cases), it merely states that you should be able to build applications that depend on SeqAn on the given platforms. This implies the availability of a supported compiler in the default package repositories or via easy-to-use third party services.

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    More platforms and compilers will be added during the SeqAn3 lifecycle, but some will be marked as experimentally supported which means support may be dropped again later on.

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    We promise to provide good forward-compatibility with the C++ standard. And we will strive to fix any warnings that are added by newer versions of a supported compiler.

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    ¹ We consider CentOS 7 / RedHat Enterprise Linux (RHEL) 7 as being community-supported. That means issues and patches are welcome, but we do not actively test for those operating systems. See this related issue.

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    │ │ │ Dependencies

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    We may add additional dependencies in future minor releases of SeqAn or raise the required versions of current dependencies. However, we promise not to add required dependencies that result in new licensing obligations or link-time dependencies.

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Core

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Range

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Header Changes:

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#include <seqan3/range/views/{trim.hpp => trim_quality.hpp}>
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Search

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Alphabet

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Argument parser

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