--- /srv/rebuilderd/tmp/rebuilderdNjL7hR/inputs/seqan3-doc_3.4.0~rc.3+ds-4_all.deb +++ /srv/rebuilderd/tmp/rebuilderdNjL7hR/out/seqan3-doc_3.4.0~rc.3+ds-4_all.deb ├── file list │ @@ -1,3 +1,3 @@ │ -rw-r--r-- 0 0 0 4 2025-04-23 13:22:40.000000 debian-binary │ -rw-r--r-- 0 0 0 81156 2025-04-23 13:22:40.000000 control.tar.xz │ --rw-r--r-- 0 0 0 2744012 2025-04-23 13:22:40.000000 data.tar.xz │ +-rw-r--r-- 0 0 0 2722248 2025-04-23 13:22:40.000000 data.tar.xz ├── control.tar.xz │ ├── control.tar │ │ ├── file list │ │ │ @@ -1,3 +1,3 @@ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2025-04-23 13:22:40.000000 ./ │ │ │ -rw-r--r-- 0 root (0) root (0) 866 2025-04-23 13:22:40.000000 ./control │ │ │ --rw-r--r-- 0 root (0) root (0) 375371 2025-04-23 13:22:40.000000 ./md5sums │ │ │ +-rw-r--r-- 0 root (0) root (0) 375101 2025-04-23 13:22:40.000000 ./md5sums │ │ ├── ./control │ │ │ @@ -1,13 +1,13 @@ │ │ │ Package: seqan3-doc │ │ │ Source: seqan3 │ │ │ Version: 3.4.0~rc.3+ds-4 │ │ │ Architecture: all │ │ │ Maintainer: Debian Med Packaging Team │ │ │ -Installed-Size: 55060 │ │ │ +Installed-Size: 53569 │ │ │ Depends: doxygen-awesome-css │ │ │ Suggests: libseqan3-dev │ │ │ Section: doc │ │ │ Priority: optional │ │ │ Multi-Arch: foreign │ │ │ Homepage: https://www.seqan.de/ │ │ │ Description: C++ library for the analysis of biological sequences v3 (documentation) │ │ ├── ./md5sums │ │ │ ├── ./md5sums │ │ │ │┄ Files differ │ │ │ ├── line order │ │ │ │ @@ -990,14 +990,15 @@ │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000015_000016.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000015_000027.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000015_000035.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000015_000038.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000015_000068.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000015_000072.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000015_000074.html │ │ │ │ +usr/share/doc/libseqan3-dev/html/dir_000015_000083.html │ │ │ │ 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-usr/share/doc/libseqan3-dev/html/dir_000054_000100.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000055_000035.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000056_000035.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000057_000097.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000058_000035.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000060_000035.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000062_000035.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000064_000016.html │ │ │ │ @@ -1134,15 +1133,14 @@ │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000066_000025.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000067_000085.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000068_000015.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000068_000016.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000068_000032.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000068_000035.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000068_000082.html │ │ │ │ -usr/share/doc/libseqan3-dev/html/dir_000068_000086.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000068_000088.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000068_000100.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000069_000100.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000071_000025.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000071_000100.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000072_000014.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000072_000016.html │ │ │ │ @@ -1155,15 +1153,14 @@ │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000073_000100.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000074_000016.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000074_000027.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000074_000035.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000074_000038.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000074_000041.html │ │ │ │ usr/share/doc/libseqan3-dev/html/dir_000074_000072.html │ │ │ │ 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./usr/share/doc/seqan3-doc/changelog.Debian.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 15747 2024-12-19 11:51:18.000000 ./usr/share/doc/seqan3-doc/changelog.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 4953 2025-02-11 15:44:24.000000 ./usr/share/doc/seqan3-doc/copyright │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2025-04-23 13:22:40.000000 ./usr/share/doc-base/ │ │ │ -rw-r--r-- 0 root (0) root (0) 686 2024-08-15 10:30:06.000000 ./usr/share/doc-base/seqan3-doc.seqan-doc │ │ ├── ./usr/share/doc/libseqan3-dev/html/aa10li_8hpp_source.html │ │ │ @@ -140,36 +140,36 @@ │ │ │
17
│ │ │
18namespace seqan3
│ │ │
19{
│ │ │
│ │ │
79class aa10li : public aminoacid_base<aa10li, 10>
│ │ │
80{
│ │ │
81private:
│ │ │ -
83 using base_t = aminoacid_base<aa10li, 10>;
│ │ │ +
83 using base_t = aminoacid_base<aa10li, 10>;
│ │ │
84
│ │ │
86 friend base_t;
│ │ │
89 friend base_t::base_t;
│ │ │
91
│ │ │
92public:
│ │ │ -
96 constexpr aa10li() noexcept = default;
│ │ │ -
97 constexpr aa10li(aa10li const &) noexcept = default;
│ │ │ -
98 constexpr aa10li(aa10li &&) noexcept = default;
│ │ │ -
99 constexpr aa10li & operator=(aa10li const &) noexcept = default;
│ │ │ -
100 constexpr aa10li & operator=(aa10li &&) noexcept = default;
│ │ │ -
101 ~aa10li() noexcept = default;
│ │ │ +
96 constexpr aa10li() noexcept = default;
│ │ │ +
97 constexpr aa10li(aa10li const &) noexcept = default;
│ │ │ +
98 constexpr aa10li(aa10li &&) noexcept = default;
│ │ │ +
99 constexpr aa10li & operator=(aa10li const &) noexcept = default;
│ │ │ +
100 constexpr aa10li & operator=(aa10li &&) noexcept = default;
│ │ │ +
101 ~aa10li() noexcept = default;
│ │ │
102
│ │ │ -
104 using base_t::base_t;
│ │ │ +
104 using base_t::base_t;
│ │ │
106
│ │ │ -
107private:
│ │ │ -
109 static constexpr char_type rank_to_char_table[alphabet_size]{'A', 'B', 'C', 'F', 'G', 'H', 'I', 'J', 'K', 'P'};
│ │ │ +
107private:
│ │ │ +
109 static constexpr char_type rank_to_char_table[alphabet_size]{'A', 'B', 'C', 'F', 'G', 'H', 'I', 'J', 'K', 'P'};
│ │ │
110
│ │ │ -
112 static constexpr rank_type char_to_rank(char_type const chr)
│ │ │ +
112 static constexpr rank_type char_to_rank(char_type const chr)
│ │ │
113 {
│ │ │
114 using index_t = std::make_unsigned_t<char_type>;
│ │ │ -
115 return char_to_rank_table[static_cast<index_t>(chr)];
│ │ │ +
115 return char_to_rank_table[static_cast<index_t>(chr)];
│ │ │
116 }
│ │ │
117
│ │ │
119 static constexpr char_type rank_to_char(rank_type const rank)
│ │ │
120 {
│ │ │
121 return rank_to_char_table[rank];
│ │ │
122 }
│ │ │
123
│ │ │ @@ -236,28 +236,28 @@ │ │ │
189
│ │ │
190// ------------------------------------------------------------------
│ │ │
191// literals
│ │ │
192// ------------------------------------------------------------------
│ │ │
193inline namespace literals
│ │ │
194{
│ │ │
195
│ │ │ -
209constexpr aa10li operator""_aa10li(char const c) noexcept
│ │ │ +
209constexpr aa10li operator""_aa10li(char const c) noexcept
│ │ │
210{
│ │ │ -
211 return aa10li{}.assign_char(c);
│ │ │ +
211 return aa10li{}.assign_char(c);
│ │ │
212}
│ │ │
213
│ │ │ -
225SEQAN3_WORKAROUND_LITERAL aa10li_vector operator""_aa10li(char const * const s, size_t const n)
│ │ │ +
225SEQAN3_WORKAROUND_LITERAL aa10li_vector operator""_aa10li(char const * const s, size_t const n)
│ │ │
226{
│ │ │ -
227 aa10li_vector r;
│ │ │ -
228 r.resize(n);
│ │ │ +
227 aa10li_vector r;
│ │ │ +
228 r.resize(n);
│ │ │
229
│ │ │ -
230 for (size_t i = 0; i < n; ++i)
│ │ │ -
231 r[i].assign_char(s[i]);
│ │ │ +
230 for (size_t i = 0; i < n; ++i)
│ │ │ +
231 r[i].assign_char(s[i]);
│ │ │
232
│ │ │ -
233 return r;
│ │ │ +
233 return r;
│ │ │
234}
│ │ │
236
│ │ │
237} // namespace literals
│ │ │
238
│ │ │
239} // namespace seqan3
│ │ │
concept.hpp
Provides seqan3::aminoacid_alphabet.
│ │ │
aminoacid_base.hpp
Provides seqan3::aminoacid_base.
│ │ │ @@ -266,21 +266,21 @@ │ │ │
seqan3::aa10li::aa10li
constexpr aa10li() noexcept=default
Defaulted.
│ │ │
seqan3::alphabet_base< aa10li, size, char >
│ │ │
seqan3::alphabet_base::assign_char
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition alphabet_base.hpp:160
│ │ │
seqan3::alphabet_base::rank_type
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition alphabet_base.hpp:77
│ │ │
seqan3::alphabet_base::alphabet_size
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition alphabet_base.hpp:196
│ │ │
seqan3::alphabet_base::char_type
std::conditional_t< std::same_as< char_t, void >, char, char_t > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition alphabet_base.hpp:69
│ │ │
seqan3::aminoacid_base
A CRTP-base that refines seqan3::alphabet_base and is used by the amino acids.
Definition aminoacid_base.hpp:30
│ │ │ -
seqan3::debug_stream_type
A "pretty printer" for most SeqAn data structures and related types.
Definition debug_stream_type.hpp:79
│ │ │ │ │ │
std::array::fill
T fill(T... args)
│ │ │ │ │ │
seqan3
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
│ │ │
seqan3::to_lower
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition transform.hpp:74
│ │ │
SEQAN3_WORKAROUND_LITERAL
#define SEQAN3_WORKAROUND_LITERAL
Our char literals returning std::vector should be constexpr if constexpr std::vector is supported.
Definition platform.hpp:294
│ │ │ +
std::vector::resize
T resize(T... args)
│ │ │
transform.hpp
Provides utilities for modifying characters.
│ │ │ │ │ │
│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │

Core

│ │ │ │ │ │

Range

│ │ │ │ │ │

Header Changes:

│ │ │
#include <seqan3/range/views/{trim.hpp => trim_quality.hpp}>
│ │ │

Search

│ │ │ │ │ │

Alphabet

│ │ │ │ │ │

Argument parser

│ │ │