=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderda3PVbF/inputs/segemehl_0.3.4-5+b1_amd64.buildinfo Source: segemehl Version: 0.3.4-5 rebuilderd-worker node: osuosl4-amd64 +------------------------------------------------------------------------------+ | Downloading sources Sat, 09 Aug 2025 21:17:27 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [138 kB] Get:2 https://deb.debian.org/debian sid InRelease [216 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 2s (9,874 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/s/segemehl/segemehl_0.3.4-5.dsc' segemehl_0.3.4-5.dsc 2032 SHA256:b3b9a58839fa46fe4705a1d89de8ca7651122ee4001a0b8857b422876dfb9f95 'https://deb.debian.org/debian/pool/main/s/segemehl/segemehl_0.3.4.orig.tar.xz' segemehl_0.3.4.orig.tar.xz 244092 SHA256:e498fb23e36d45a0d0035105812a747ca901af366d07dde431c25a49ee28abbc 'https://deb.debian.org/debian/pool/main/s/segemehl/segemehl_0.3.4-5.debian.tar.xz' segemehl_0.3.4-5.debian.tar.xz 7788 SHA256:2215ecca17c8dc76082b2e4b45938d981373bac5a122d4afd3abe6dfcd0620ca e498fb23e36d45a0d0035105812a747ca901af366d07dde431c25a49ee28abbc segemehl_0.3.4.orig.tar.xz 2215ecca17c8dc76082b2e4b45938d981373bac5a122d4afd3abe6dfcd0620ca segemehl_0.3.4-5.debian.tar.xz b3b9a58839fa46fe4705a1d89de8ca7651122ee4001a0b8857b422876dfb9f95 segemehl_0.3.4-5.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sat, 09 Aug 2025 21:17:30 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderda3PVbF/out --builder=sbuild+unshare -- /srv/rebuilderd/tmp/rebuilderda3PVbF/inputs/segemehl_0.3.4-5+b1_amd64.buildinfo Rebuilding segemehl=0.3.4-5 in /srv/rebuilderd/tmp/rebuilderda3PVbF/inputs now. +------------------------------------------------------------------------------+ | WARNING: calling debrebuild without --cache, hammering snapshot.d.o :( | +------------------------------------------------------------------------------+ /srv/rebuilderd/tmp/rebuilderda3PVbF/inputs/segemehl_0.3.4-5+b1_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/segemehl-0.3.4 I: verifying dsc... successful! dpkg-name: info: moved 'b4ad8d553a774cdc379b679d99bae9e8a7a00a3e' to '/srv/rebuilderd/tmp/tmpob12vqfu/libncurses6_6.4+20240113-1_amd64.deb' dpkg-name: info: moved 'fb0f73868a6172a596d656795430d97f2c97e32e' to '/srv/rebuilderd/tmp/tmpfyppzyer/perl-modules-5.38_5.38.2-3.2_all.deb' dpkg-name: info: moved '5c88ab2bc2c13f4499c41dbf2277d9eb0f33f972' to '/srv/rebuilderd/tmp/tmpa72s4git/libgcrypt20_1.10.3-2_amd64.deb' dpkg-name: info: moved '533e4a7ac037c3a2b6885d1fec57c173a93a0c87' to '/srv/rebuilderd/tmp/tmpo6phi1he/libhtscodecs2_1.6.0-1+b1_amd64.deb' dpkg-name: info: moved 'd6244762d23ab6cab7f380c210e90e385e8d8aa8' to '/srv/rebuilderd/tmp/tmphosfeu_x/libasan8_14-20240315-1_amd64.deb' dpkg-name: info: moved 'ab11f8736c30b20270aef08e0a2128b62e3cdeef' to '/srv/rebuilderd/tmp/tmpmido8nbm/libpsl5t64_0.21.2-1.1_amd64.deb' dpkg-name: info: moved 'e6396f2faf6325ca946030d6f66af895f7f4f8e5' to '/srv/rebuilderd/tmp/tmpx087vcpf/libgmp10_6.3.0+dfsg-2+b1_amd64.deb' dpkg-name: info: moved 'f405b2c89a055d08790a5e0846675d87a5c38b07' to '/srv/rebuilderd/tmp/tmp1xm57vpf/libsasl2-2_2.1.28+dfsg1-6_amd64.deb' dpkg-name: info: moved 'c51b847b1da67e85fb86b62e4354108506ab2529' to '/srv/rebuilderd/tmp/tmph6ylbju_/zlib1g_1.3.dfsg-3.1_amd64.deb' dpkg-name: info: moved '0cd5ae4473a5a6e3c52b27ee02d4ce36516d7513' to '/srv/rebuilderd/tmp/tmp1npr55g_/libdebhelper-perl_13.15.2_all.deb' dpkg-name: info: moved 'cbbb067a9a9469db1bff281f5c205a8897d4b93e' to '/srv/rebuilderd/tmp/tmphyh16fri/libc-dev-bin_2.37-15.1_amd64.deb' dpkg-name: info: moved 'cf1501b5ab8efa7ce39c11a3af1afdd3e483ec64' to '/srv/rebuilderd/tmp/tmpafgex3s4/libnettle8t64_3.9.1-2.2_amd64.deb' dpkg-name: info: moved 'be196c919e5b8c09eeaa43a39055b69a52c3f228' to '/srv/rebuilderd/tmp/tmpjau23cxu/libicu72_72.1-4+b1_amd64.deb' dpkg-name: info: moved '4add0249ce2fc14394d1f6578b45154b62980a63' to '/srv/rebuilderd/tmp/tmp3z270k6b/gzip_1.12-1.1_amd64.deb' dpkg-name: info: moved '1d286dc17de69478f929b92b6ba8225f41987c7b' to '/srv/rebuilderd/tmp/tmp008kopsl/binutils_2.42-4_amd64.deb' dpkg-name: info: moved '608f780efe98b9c53e4106105339d85c976e9042' to '/srv/rebuilderd/tmp/tmpxu4zgght/libbinutils_2.42-4_amd64.deb' dpkg-name: info: moved '5ffed64cb87ef7d46696b6d0e808d27ec352a00c' to '/srv/rebuilderd/tmp/tmpoksbve56/libhogweed6t64_3.9.1-2.2_amd64.deb' dpkg-name: info: moved '8464fef82f9738b81139c0b611df8c3831c1f0d4' to '/srv/rebuilderd/tmp/tmph467ftm7/libstdc++-13-dev_13.2.0-19_amd64.deb' dpkg-name: info: moved '29a8c33351d40a60b16b3602b52752611b91506f' to '/srv/rebuilderd/tmp/tmpa7xrbc5d/libcurl4-gnutls-dev_8.6.0-4_amd64.deb' dpkg-name: info: moved '73c90dd8b0ddda9006afbd8692a7356b6422e50f' to '/srv/rebuilderd/tmp/tmpx9seqtce/libudev1_255.4-1+b1_amd64.deb' dpkg-name: info: moved 'b783d7e96b2eb4ce7fc23ffcb86a58d25d5577a0' to '/srv/rebuilderd/tmp/tmpdre285j1/usr-is-merged_39_all.deb' dpkg-name: info: moved '5c26937072136ab1ea6c3373d493da27ef1fa40f' to '/srv/rebuilderd/tmp/tmp16luqfyo/libcap-ng0_0.8.4-2_amd64.deb' dpkg-name: info: moved '96b759971735b094f9b5833ec8300a32d725ebf9' to '/srv/rebuilderd/tmp/tmp9p9mrhoa/libgdbm6t64_1.23-5.1_amd64.deb' dpkg-name: info: moved '3d4e1e417d7b1af14e8b308f86778a00075a1744' to '/srv/rebuilderd/tmp/tmp8t4edp9d/debianutils_5.17_amd64.deb' dpkg-name: info: moved 'ac46923bb8ce18a62fba0ffe7e09ddc01975f0ca' to '/srv/rebuilderd/tmp/tmpcoyenpr6/libcom-err2_1.47.0-2.4_amd64.deb' dpkg-name: info: moved 'fb6e94185581cf639c8a26a8b6a266e5b872c70a' to '/srv/rebuilderd/tmp/tmpzdssl5_l/libctf0_2.42-4_amd64.deb' dpkg-name: info: moved '1b35fffeb1eefc1bd6f9b414330ce558eabbe28b' to '/srv/rebuilderd/tmp/tmpbpc70g4g/autoconf_2.71-3_all.deb' dpkg-name: info: moved 'ba11b393463bccfd14ed05253dd90b2e8bdf9b5e' to '/srv/rebuilderd/tmp/tmpjmubil3k/debconf_1.5.86_all.deb' dpkg-name: info: moved '129d10910ddb1a950ee4d8f110911fa90ba3b797' to '/srv/rebuilderd/tmp/tmp0kynm2qj/libhts3t64_1.19+ds-1.1+b1_amd64.deb' dpkg-name: info: moved 'a62ab6200e0cec5d897797072c6fbfe721354386' to '/srv/rebuilderd/tmp/tmphwoile_k/libuchardet0_0.0.8-1+b1_amd64.deb' dpkg-name: info: moved '173eb26999913b3914e2da28dc159378f2ca6085' to '/srv/rebuilderd/tmp/tmp6qx0rura/dpkg_1.22.6_amd64.deb' dpkg-name: info: moved 'ff5aa9aedf16ab3e4408c06cd5913334991be363' to '/srv/rebuilderd/tmp/tmpg6z1rbdf/bsdextrautils_2.39.3-10_amd64.deb' dpkg-name: info: moved '64386b26e3c3189ebea76102f2023b4c38eb281c' to '/srv/rebuilderd/tmp/tmp_4i6s5fp/libcap2_2.66-5_amd64.deb' dpkg-name: info: moved '8a101c8bb9d99e26d87ebe039c4bebbc512001e0' to '/srv/rebuilderd/tmp/tmpvo9ilor5/libgpg-error0_1.47-3_amd64.deb' dpkg-name: info: moved '42fc22c76dade04c99d8a23141a5fe12d46ae697' to '/srv/rebuilderd/tmp/tmpcdv6lwp8/rpcsvc-proto_1.4.3-1_amd64.deb' dpkg-name: info: moved '7213682f37ce8d45eabe6c16ea054b9ef59cda9a' to '/srv/rebuilderd/tmp/tmpq7v9i42c/libuuid1_2.39.3-10_amd64.deb' dpkg-name: info: moved '9f1fc0e6062cbe262ba189a0f2a83f97e355752c' to '/srv/rebuilderd/tmp/tmpt1nzj2wn/libcc1-0_14-20240315-1_amd64.deb' dpkg-name: info: moved 'e427677b19301d797cc9179b129a880e3f498435' to '/srv/rebuilderd/tmp/tmpuzgs7e3p/libmount1_2.39.3-10_amd64.deb' dpkg-name: info: moved '8ae4e245282cd5b9117f4f08575ae76114331d41' to '/srv/rebuilderd/tmp/tmp_6s0urlq/libidn2-0_2.3.7-2_amd64.deb' dpkg-name: info: moved '886c3e63481d18ffc4bde29dc90d978f53f91b79' to '/srv/rebuilderd/tmp/tmp7zbf29rs/binutils-common_2.42-4_amd64.deb' dpkg-name: info: moved 'aaa39427a54dd06c751162f9c02960940e4d0e80' to '/srv/rebuilderd/tmp/tmppsyd35ll/libgprofng0_2.42-4_amd64.deb' dpkg-name: info: moved '4a6c7e3bccbe7fcbb93afeb90e31a3446708d848' to '/srv/rebuilderd/tmp/tmp47tirba5/libaudit-common_3.1.2-2.1_all.deb' dpkg-name: info: moved 'd3e83cd9b45afc69d5b89f3f2c5e4683abeabb64' to '/srv/rebuilderd/tmp/tmpov2sq_5f/g++-13-x86-64-linux-gnu_13.2.0-19_amd64.deb' dpkg-name: info: moved 'ed449d06d1e84c56deb2487977971e46ba5cf699' to '/srv/rebuilderd/tmp/tmpo87vp16i/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: info: moved '785d98c02f469c07263905d291be5f1e95d0f4eb' to '/srv/rebuilderd/tmp/tmpx6pnzgk3/dwz_0.15-1+b1_amd64.deb' dpkg-name: info: moved '2a607962b25c565b4d47823baefece9f4d1fcc9a' to '/srv/rebuilderd/tmp/tmplzlq6z8m/mawk_1.3.4.20240123-1_amd64.deb' dpkg-name: info: moved '979cc5613e38547a4ee6d4c76142d443ea008b93' to '/srv/rebuilderd/tmp/tmpzn8tfd7c/pkgconf_1.8.1-1+b2_amd64.deb' dpkg-name: info: moved 'e41be3327e467a91db461851e72028b75ca59999' to '/srv/rebuilderd/tmp/tmpbh0_4ho9/automake_1.16.5-1.3_all.deb' dpkg-name: info: moved '1a45f097baf38ba522aaaffcb9453199f84b8f96' to '/srv/rebuilderd/tmp/tmp2os2e2u3/libhts-dev_1.19+ds-1.1+b1_amd64.deb' dpkg-name: info: moved 'bbcaf8bb6e8038333803ebb5702f6b8e939021f5' to '/srv/rebuilderd/tmp/tmpw8f21njw/libkrb5-3_1.20.1-6_amd64.deb' dpkg-name: info: moved 'd21162109f7d53c0675bb22508c314788cad86c5' to '/srv/rebuilderd/tmp/tmpdo6yr3cq/base-files_13_amd64.deb' dpkg-name: info: moved '1702526d4072e630a505ba36c0085b3295293130' to '/srv/rebuilderd/tmp/tmp4grij6yz/liblzma5_5.6.0-0.2_amd64.deb' dpkg-name: info: moved 'e716de259a8b65b644d876536d0231d08770b01d' to '/srv/rebuilderd/tmp/tmpqye60kga/libpam-modules_1.5.3-6_amd64.deb' dpkg-name: info: moved '69db96c0518c282551e49d67e29819941fa4f7c4' to '/srv/rebuilderd/tmp/tmp3m7yy1bv/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: info: moved '34b7709fb29bf8a189c14727114bb43dd5a1089b' to '/srv/rebuilderd/tmp/tmpr_o_4alu/libunistring5_1.1-2_amd64.deb' dpkg-name: info: moved '4e7d91ffb25db82aac5c87e9116a73bf6ee0e521' to '/srv/rebuilderd/tmp/tmp1eiokhgw/libctf-nobfd0_2.42-4_amd64.deb' dpkg-name: info: moved '41e1c74d8e7600489887852d356891b6468601f8' to '/srv/rebuilderd/tmp/tmp2qsqrf7r/perl_5.38.2-3.2_amd64.deb' dpkg-name: info: moved '71af9460e6497fcb8219ca9e90d4373a6596d7af' to '/srv/rebuilderd/tmp/tmp72e04v7d/init-system-helpers_1.66_all.deb' dpkg-name: info: moved 'e1c7045f08b23fdb52b237b493b24eea8af0d7db' to '/srv/rebuilderd/tmp/tmprv1syfkm/libffi8_3.4.6-1_amd64.deb' dpkg-name: info: moved '6b6ef2d717e82f1b0a73c2d69fec54f90adadd06' to '/srv/rebuilderd/tmp/tmp8ypfkbkv/libmagic-mgc_5.45-3_amd64.deb' dpkg-name: info: moved '7f6c1391024264c6136094c6bf2b33e38bca1646' to '/srv/rebuilderd/tmp/tmpy5e_y410/gcc-13-base_13.2.0-19_amd64.deb' dpkg-name: info: moved '12110abeec21b9e4bc3acdbc131f1242aa8b22ce' to '/srv/rebuilderd/tmp/tmpvgo7i5gd/libmagic1t64_5.45-3_amd64.deb' dpkg-name: info: moved '87d421823bec55d5764423ab93bd36687eadf455' to '/srv/rebuilderd/tmp/tmp1pwuih03/libc6_2.37-15.1_amd64.deb' dpkg-name: info: moved 'a1f2ee3c731b7a00dc4a3b1dd5dc7c44e5a7ff87' to '/srv/rebuilderd/tmp/tmpsyg7gze8/diffutils_3.10-1_amd64.deb' dpkg-name: info: moved '8d17c842846f34b960b6dfe880811347ca596d83' to '/srv/rebuilderd/tmp/tmpc4kinb6v/libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb' dpkg-name: info: moved '5a22e0d38e9588cb37c5c32ed495573d7baf09d0' to '/srv/rebuilderd/tmp/tmp1spx2f56/libpam-modules-bin_1.5.3-6_amd64.deb' dpkg-name: info: moved 'c641d984315d89b341a9a15637670d00d1896a80' to '/srv/rebuilderd/tmp/tmpj1m2ejtu/libdpkg-perl_1.22.6_all.deb' dpkg-name: info: moved 'a8c53f1877236e750d7f35c15cf6e0c81e800909' to '/srv/rebuilderd/tmp/tmpbnwp8ljg/cpp-x86-64-linux-gnu_13.2.0-7_amd64.deb' dpkg-name: info: moved '1be2a8fcd3494cc87beeca3e18f13852d13a6c62' to '/srv/rebuilderd/tmp/tmpsynf1g54/gettext_0.21-14+b1_amd64.deb' dpkg-name: info: moved '804aa0278b2b63cda9e8c5ade08d76d450cdebb4' to '/srv/rebuilderd/tmp/tmpq1be3r3i/libquadmath0_14-20240315-1_amd64.deb' dpkg-name: info: moved '9043d381a62a798a5a9777fc9c2dc855eaaa2b9d' to '/srv/rebuilderd/tmp/tmp5rxspkz7/libubsan1_14-20240315-1_amd64.deb' dpkg-name: info: moved '497a56f2f645b9449216d7ffa2f5fbd877fa5178' to '/srv/rebuilderd/tmp/tmpgg7dwclp/tar_1.35+dfsg-3_amd64.deb' dpkg-name: info: moved '954e59b5eb01fb837167193ed05fa2f578746365' to '/srv/rebuilderd/tmp/tmpbv7i6xwi/autotools-dev_20220109.1_all.deb' dpkg-name: info: moved 'c50604b48dad27bb4c70f7ac076f89edb4fc80e0' to '/srv/rebuilderd/tmp/tmptbnqb9ii/librtmp1_2.4+20151223.gitfa8646d.1-2+b3_amd64.deb' dpkg-name: info: moved '45dabb4c586dc002f6f91e491a726ee0ae948481' to '/srv/rebuilderd/tmp/tmp618e9ier/libseccomp2_2.5.5-1_amd64.deb' dpkg-name: info: moved '279e568de79a5679cf80cb69c4b4847c1a2464b5' to '/srv/rebuilderd/tmp/tmpkdy74i95/libldap-2.5-0_2.5.16+dfsg-2_amd64.deb' dpkg-name: info: moved '4c8cd6078d4b0a3e0d91160bc757d1bf5f7a269e' to '/srv/rebuilderd/tmp/tmpr2za5l13/cpp-13_13.2.0-19_amd64.deb' dpkg-name: info: moved 'b3d80f6869a1e424727c4d3f87ba2cbcbe8a6f02' to '/srv/rebuilderd/tmp/tmp2flw4jrc/gcc-13-x86-64-linux-gnu_13.2.0-19_amd64.deb' dpkg-name: info: moved '3178850c82672525244b750776815e2ff4551fc2' to '/srv/rebuilderd/tmp/tmpai38di5e/make_4.3-4.1_amd64.deb' dpkg-name: info: moved '1e07edeb7fb7d4edb7e41ef7b4e8fc37b7492802' to '/srv/rebuilderd/tmp/tmppif9b1s5/cpp_13.2.0-7_amd64.deb' dpkg-name: info: moved '7b2a21f5ff2acbec53d9a5ca375e77161ffca206' to '/srv/rebuilderd/tmp/tmpgjkcxn_0/debhelper_13.15.2_all.deb' dpkg-name: info: moved '630f803e0befc2afa4cf673abda6931e0f1c8430' to '/srv/rebuilderd/tmp/tmpumkw80zy/libjansson4_2.14-2+b2_amd64.deb' dpkg-name: info: moved '2595bae09c1dcea0e48cb1f0e90393ed22ffdfb6' to '/srv/rebuilderd/tmp/tmpuozxu7zb/gcc_13.2.0-7_amd64.deb' dpkg-name: info: moved '49fba9ee90c99f15517ab0e905a416e263cfd45e' to '/srv/rebuilderd/tmp/tmph91_6w60/libgomp1_14-20240315-1_amd64.deb' dpkg-name: info: moved '5700cfd4fe2ca7c13a0f4410d1876b98c2f95fc5' to '/srv/rebuilderd/tmp/tmph60zx5yi/libsystemd0_255.4-1+b1_amd64.deb' dpkg-name: info: moved 'bea064dfda3b00a3b3a2efec3954853cebe58460' to '/srv/rebuilderd/tmp/tmp98yz7gdn/man-db_2.12.0-3_amd64.deb' dpkg-name: info: moved '98b7982dd3572f9461a20ce19298028df274df2c' to '/srv/rebuilderd/tmp/tmp7dmwzdse/libblkid1_2.39.3-10_amd64.deb' dpkg-name: info: moved '194738b73f65d1cf4b9ae6c5562b3917f56d2c01' to '/srv/rebuilderd/tmp/tmp2mkfoayf/libmpc3_1.3.1-1+b2_amd64.deb' dpkg-name: info: moved '964952fa784d15964538b31a9e9a16c83f04466f' to '/srv/rebuilderd/tmp/tmp9gi01_ww/gcc-13_13.2.0-19_amd64.deb' dpkg-name: info: moved '2a41cf73ff81ede0dd3d3a45e26772ee4b82d656' to '/srv/rebuilderd/tmp/tmpdg7cd394/libpam0g_1.5.3-6_amd64.deb' dpkg-name: info: moved '2d9b30ec5295aa12784d7ab6c99213b26f484b07' to '/srv/rebuilderd/tmp/tmp2p4vt0bk/libncursesw6_6.4+20240113-1_amd64.deb' dpkg-name: info: moved '3d20d7a98c63bf89d2b88ce33aaf35d1d0e517be' to '/srv/rebuilderd/tmp/tmp9g5srnlf/sysvinit-utils_3.08-7_amd64.deb' dpkg-name: info: moved '081414310d55b4e4330ac463adf70cfcb126d851' to '/srv/rebuilderd/tmp/tmp_oj2tgzu/libp11-kit0_0.25.3-4_amd64.deb' dpkg-name: info: moved 'd8fc9fc60d8dbb16d2642ea2770f66730323ed45' to '/srv/rebuilderd/tmp/tmpicw7al_9/patch_2.7.6-7_amd64.deb' dpkg-name: info: moved 'd5999d9ea4d90e31c7064df099890fc58b63b7b1' to '/srv/rebuilderd/tmp/tmpscaghxf7/g++_13.2.0-7_amd64.deb' dpkg-name: info: moved 'e5074f43b083e07620f961c03f868debec7db932' to '/srv/rebuilderd/tmp/tmptdxzo1f_/bsdutils_2.39.3-10_amd64.deb' dpkg-name: info: moved 'bb9ecb8ca6bee881757385eac2e8472359bcbe19' to '/srv/rebuilderd/tmp/tmpz2rvgf9q/libpam-runtime_1.5.3-6_all.deb' dpkg-name: info: moved '1c2fe0dca87c74bb506c85aeb6fdcb73c99ec190' to '/srv/rebuilderd/tmp/tmpjtjh1mf_/hostname_3.23+nmu2_amd64.deb' dpkg-name: info: moved '7af72fdec7c6638fee9f712727dec75552a76305' to '/srv/rebuilderd/tmp/tmpcwzi43qm/libaudit1_3.1.2-2.1_amd64.deb' dpkg-name: info: moved '3d381908ad3a0dc0e74043f044ce7d7b61aededf' to '/srv/rebuilderd/tmp/tmp5msbqvh2/libitm1_14-20240315-1_amd64.deb' dpkg-name: info: moved 'ad68ff619088e73a7d7dead8bf3a24ff1219b5aa' to '/srv/rebuilderd/tmp/tmpx_26u5mn/libnghttp2-14_1.59.0-1+b1_amd64.deb' dpkg-name: info: moved '7b4e3f926c942beb95cbac78d8c3d3d1f33995c4' to '/srv/rebuilderd/tmp/tmp5o9m0_5_/libtinfo6_6.4+20240113-1_amd64.deb' dpkg-name: info: moved 'e2a25c59476355507e30db35d1c46cfd34b3e214' to '/srv/rebuilderd/tmp/tmp32exeiap/bash_5.2.21-2_amd64.deb' dpkg-name: info: moved '58218d5fd111e985646c0d8d109cf64162796716' to '/srv/rebuilderd/tmp/tmpfhof7j94/dh-autoreconf_20_all.deb' dpkg-name: info: moved '56b0d51bc6ea28996af11a94999a7dae47b6ff1b' to '/srv/rebuilderd/tmp/tmp62y2jaac/libpkgconf3_1.8.1-1+b2_amd64.deb' dpkg-name: info: moved '26914c631c9fbe3089da5719a7408758dfcc0938' to '/srv/rebuilderd/tmp/tmpi_mskc8k/ncurses-bin_6.4+20240113-1_amd64.deb' dpkg-name: info: moved 'a1f1ab4697734e438f1fe7b36771b574e25cfdc7' to '/srv/rebuilderd/tmp/tmp62f79les/libgdbm-compat4t64_1.23-5.1_amd64.deb' dpkg-name: info: moved '57f9c23132d3dcfe058eac15cc13b95408034646' to '/srv/rebuilderd/tmp/tmp6n2azenc/dpkg-dev_1.22.6_all.deb' dpkg-name: info: moved '07b4145c6597196247eb3af44401bafdc13fce8e' to '/srv/rebuilderd/tmp/tmpdpo4xqv9/g++-x86-64-linux-gnu_13.2.0-7_amd64.deb' dpkg-name: info: moved '2272cfa437d9ddecbf15aa89b48b023857f80bbf' to '/srv/rebuilderd/tmp/tmptpee5dk9/libc6-dev_2.37-15.1_amd64.deb' dpkg-name: info: moved 'b35943fcf7a985542dd2664ea460dfeb38389113' to '/srv/rebuilderd/tmp/tmpyi4q25pc/libdebconfclient0_0.271+b2_amd64.deb' dpkg-name: info: moved 'f69ea141aeafbc4c2a1cf2e84c267c3788b56e42' to '/srv/rebuilderd/tmp/tmp1543_91u/libdeflate-dev_1.20-1_amd64.deb' dpkg-name: info: moved 'e81cb036623bd45bc862ce656da4740020ffef60' to '/srv/rebuilderd/tmp/tmpjymcu855/liblzma-dev_5.6.0-0.2_amd64.deb' dpkg-name: info: moved 'cb81d8a7b0ab680146c5e4f3da0ee092eacea985' to '/srv/rebuilderd/tmp/tmpjyuwh93r/libsub-override-perl_0.10-1_all.deb' dpkg-name: info: moved '4be3e9a21065f1fd6fa78f7a7d0733a6550594bf' to '/srv/rebuilderd/tmp/tmp4_gi8joy/pkg-config_1.8.1-1+b2_amd64.deb' dpkg-name: info: moved '9de1214335fc7231e1c3ad338f24f7440892287d' to '/srv/rebuilderd/tmp/tmpomlky9ni/libssh2-1t64_1.11.0-4.1+b1_amd64.deb' dpkg-name: info: moved '5361fe4752628664eb2d6c7aada5e51684d61566' to '/srv/rebuilderd/tmp/tmp9cje7ebq/ncurses-base_6.4+20240113-1_all.deb' dpkg-name: info: moved 'c15541020bd9df9ef3a9863d662701cbc5d882da' to '/srv/rebuilderd/tmp/tmpo6x43lxx/autopoint_0.21-14_all.deb' dpkg-name: info: moved 'ed08d8e20c2dc74a6c3dea4f6d3da96c1e31d970' to '/srv/rebuilderd/tmp/tmpswsrtviv/cpp-13-x86-64-linux-gnu_13.2.0-19_amd64.deb' dpkg-name: info: moved 'a654f26c15e4ca791a7b7074ea2392c1600c0dff' to '/srv/rebuilderd/tmp/tmptps7clp4/findutils_4.9.0-5_amd64.deb' dpkg-name: info: moved '3e1f663f457f9b4bf8b9ef2d022d63eb35e6ada9' to '/srv/rebuilderd/tmp/tmp1b05pf5u/libacl1_2.3.2-1_amd64.deb' dpkg-name: info: moved '6000319fb5c7e9583ffd044c8ba25eaeffa7e9c9' to '/srv/rebuilderd/tmp/tmpydppwge0/libatomic1_14-20240315-1_amd64.deb' dpkg-name: info: moved '20a7e4ad5e2d7058baef12a9d7e9dd1fdeebdc44' to '/srv/rebuilderd/tmp/tmpdt32uzoc/libstdc++6_14-20240315-1_amd64.deb' dpkg-name: info: moved 'c31d591dccee48635fe7d38e4748af4906a1c3eb' to '/srv/rebuilderd/tmp/tmpn2iq7gg5/libisl23_0.26-3+b2_amd64.deb' dpkg-name: info: moved '9e1bd6f7a0bd322ccafdc4a3de2ae0b7cfc08ea0' to '/srv/rebuilderd/tmp/tmpd4un0vy7/libssl3t64_3.1.5-1.1_amd64.deb' dpkg-name: info: moved '82d7c33ec3e031e587d32373b37612d5aabd9087' to '/srv/rebuilderd/tmp/tmpyj8w0ki5/xz-utils_5.6.0-0.2_amd64.deb' dpkg-name: info: moved '8c5580c7ae6b55bc701e1fe53a05e8a4a48f86e4' to '/srv/rebuilderd/tmp/tmp79jlu8mi/sed_4.9-2_amd64.deb' dpkg-name: info: moved 'a887a8f28a6ce22b515a4c123bc6d4978bb07a61' to '/srv/rebuilderd/tmp/tmpshrr3vv3/libgnutls30t64_3.8.3-1.1+b1_amd64.deb' dpkg-name: info: moved 'f7020862cc2b778d09491074187aa63512a2045d' to '/srv/rebuilderd/tmp/tmptih7z_fc/libzstd1_1.5.5+dfsg2-2_amd64.deb' dpkg-name: info: moved 'c5692855610497754260b756b290f80c92561dd6' to '/srv/rebuilderd/tmp/tmpwxn7wfh8/libc-bin_2.37-15.1_amd64.deb' dpkg-name: info: moved 'd6838eda51929aaa0d30fe4c2a595ba7689ce6e4' to '/srv/rebuilderd/tmp/tmphhmx_346/util-linux_2.39.3-10_amd64.deb' dpkg-name: info: moved '474c22b0661646b11ceda40d14665991beb7e979' to '/srv/rebuilderd/tmp/tmpukva32nl/login_4.13+dfsg1-4_amd64.deb' 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'/srv/rebuilderd/tmp/tmpx4_c4aj8/libcrypt1_4.4.36-4_amd64.deb' dpkg-name: info: moved 'd31906734cf4e9758820b64aa0e2685c075c27ba' to '/srv/rebuilderd/tmp/tmp653nocbf/libcurl3t64-gnutls_8.6.0-4_amd64.deb' dpkg-name: info: moved 'b98da5db2750dee3fb3120afc3bba81c9aa10e97' to '/srv/rebuilderd/tmp/tmpeivq6js_/m4_1.4.19-4_amd64.deb' dpkg-name: info: moved '14b37125805aa5467f2cbc5fcbb24a513cc62193' to '/srv/rebuilderd/tmp/tmpae8sytgq/libpipeline1_1.5.7-1+b2_amd64.deb' dpkg-name: info: moved '4a679d84763c65e126de3e1b88bdaf860878271f' to '/srv/rebuilderd/tmp/tmptemo65ho/pkgconf-bin_1.8.1-1+b2_amd64.deb' dpkg-name: info: moved '75e8a90176b27a068c7df57c74361bec17429676' to '/srv/rebuilderd/tmp/tmpwy0mp4hz/base-passwd_3.6.3_amd64.deb' dpkg-name: info: moved '8cf73d15464fd17e38d211afe83b009f86f2072f' to '/srv/rebuilderd/tmp/tmpp1v2s66l/liblsan0_14-20240315-1_amd64.deb' dpkg-name: info: moved 'e465fc7b81f4f3403213f379c547dd9859594d3d' to '/srv/rebuilderd/tmp/tmpnrsq81w3/libsframe1_2.42-4_amd64.deb' dpkg-name: info: moved 'bd048df74e931df4553b2a1aba10b9a5880621c9' to '/srv/rebuilderd/tmp/tmp8_pshkpv/build-essential_12.10_amd64.deb' dpkg-name: info: moved '053184f5ee29242ccdb91207a02172c6777f1ed9' to '/srv/rebuilderd/tmp/tmp_a39r_my/gcc-x86-64-linux-gnu_13.2.0-7_amd64.deb' dpkg-name: info: moved '95cc10eac523ff470c27d79b0f06c002ed0f73d5' to '/srv/rebuilderd/tmp/tmpayow7nrl/liblz4-1_1.9.4-1+b2_amd64.deb' dpkg-name: info: moved '966c608dfa15a6dcefa6ca0ccab6b8ba88e43759' to '/srv/rebuilderd/tmp/tmpgzap69fl/libgcc-13-dev_13.2.0-19_amd64.deb' dpkg-name: info: moved 'c6c62d7c83395a8f572b3478f6f182c1c8262377' to '/srv/rebuilderd/tmp/tmp2wq10p89/sensible-utils_0.0.22_all.deb' dpkg-name: info: moved '2e151cf41c9c58ee2fd7ef19424656a128b7203a' to '/srv/rebuilderd/tmp/tmpoeke8ln_/libfile-stripnondeterminism-perl_1.13.1-1_all.deb' dpkg-name: info: moved '9ae4a46f550d447bb0b63480ffeb07da1602fd99' to '/srv/rebuilderd/tmp/tmpe_foqk_1/libmpfr6_4.2.1-1+b1_amd64.deb' dpkg-name: info: moved 'ce0481c1c96f784c714b444c22e4fca2e5ac408a' to '/srv/rebuilderd/tmp/tmpas6ai2r5/zlib1g-dev_1.3.dfsg-3.1_amd64.deb' dpkg-name: info: moved 'a6868a252b800881932809f5de102ea0a8af2d1d' to '/srv/rebuilderd/tmp/tmp635fghwp/libncurses-dev_6.4+20240113-1_amd64.deb' dpkg-name: info: moved 'd396877a028fd89d433f1185f8b4a4f1ee132c0c' to '/srv/rebuilderd/tmp/tmpi1gaqv3g/libgssapi-krb5-2_1.20.1-6_amd64.deb' dpkg-name: info: moved '880026c6887ae3fe06df6202f42d1f7cb58eadf7' to '/srv/rebuilderd/tmp/tmpoy5racww/libelf1t64_0.191-1_amd64.deb' dpkg-name: info: moved '377edbcd4196bbc733f74b6321a5b53d4b79626b' to '/srv/rebuilderd/tmp/tmpofmi6nn0/coreutils_9.4-3.1_amd64.deb' dpkg-name: info: moved 'c985dc67d0596293d22a6c050b33fcb78d30326f' to '/srv/rebuilderd/tmp/tmpm4qbs8io/po-debconf_1.0.21+nmu1_all.deb' dpkg-name: info: moved '4cc21159d84a9aaeace803a8babcbe83bf995a09' to '/srv/rebuilderd/tmp/tmpd4zguhls/libtsan2_14-20240315-1_amd64.deb' dpkg-name: info: moved '2f429bdb7997c9e83b70d06753ce0bb059678ed8' to '/srv/rebuilderd/tmp/tmpsv266bwr/libcrypt-dev_4.4.36-4_amd64.deb' dpkg-name: info: moved 'bc8f900a0c15d1acf6e48c90a0e9e0ba3be7b4a5' to '/srv/rebuilderd/tmp/tmp3zgpbofr/perl-base_5.38.2-3.2_amd64.deb' dpkg-name: info: moved '4497b6a35272b4163d0fcc1e03da8d89e1965635' to '/srv/rebuilderd/tmp/tmplpfa42_9/groff-base_1.23.0-3+b1_amd64.deb' dpkg-name: info: moved '8501dc9fc575d213079dea49853b34b372ac3c74' to '/srv/rebuilderd/tmp/tmp427gu_zo/libgcc-s1_14-20240315-1_amd64.deb' dpkg-name: info: moved 'da2d775dc27fe0214e66bd86746556e4b26d610f' to '/srv/rebuilderd/tmp/tmptsikveu1/libmd0_1.1.0-2_amd64.deb' dpkg-name: info: moved '280ad6ab1c330c6f1f4c591d202c9973252daf9b' to '/srv/rebuilderd/tmp/tmpsx5f1l78/libattr1_2.5.2-1_amd64.deb' dpkg-name: info: moved 'ba14a3ef482f65ba378502074bdc97623d0c7204' to '/srv/rebuilderd/tmp/tmpspgj49a1/libtool_2.4.7-7_all.deb' dpkg-name: info: moved 'c96d2ad946319bcdc68fa0b467514d1b97398339' to '/srv/rebuilderd/tmp/tmpqacht6lv/libkeyutils1_1.6.3-3_amd64.deb' dpkg-name: info: moved '84a3f08d7796f71caf81402c1d13020f74c9ae75' to '/srv/rebuilderd/tmp/tmp31_rg8hk/dh-strip-nondeterminism_1.13.1-1_all.deb' dpkg-name: info: moved '99b6adf2b54de7fbed270aa1006ea9c936910c8c' to '/srv/rebuilderd/tmp/tmp41l4iybj/libk5crypto3_1.20.1-6_amd64.deb' dpkg-name: info: moved '7be65b5bb4a2ddcc5dd65c1413a32b0a6264ea09' to '/srv/rebuilderd/tmp/tmpdrngo1bo/linux-libc-dev_6.7.9-2_all.deb' dpkg-name: info: moved '03c475538533329a463305a9243f0572b03d6841' to '/srv/rebuilderd/tmp/tmp28gtjbbe/dash_0.5.12-6_amd64.deb' dpkg-name: info: moved '9870cf7731dab27e160e89219536eeaafdd348e0' to '/srv/rebuilderd/tmp/tmp8w4nsx6v/libsmartcols1_2.39.3-10_amd64.deb' dpkg-name: info: moved 'acab56dcc116f8299c197dff8e071559a4c0cbf9' to '/srv/rebuilderd/tmp/tmpc6toyqf0/grep_3.11-4_amd64.deb' dpkg-name: info: moved '81938fd7bd7d312796116e69e486ea33e1182da3' to '/srv/rebuilderd/tmp/tmplyacq74p/libdb5.3t64_5.3.28+dfsg2-5+b1_amd64.deb' dpkg-name: info: moved '2b84241293f54baf2265c6f1656fb266f0db4649' to '/srv/rebuilderd/tmp/tmpt56p5ouh/libxml2_2.9.14+dfsg-1.3+b2_amd64.deb' dpkg-name: info: moved 'ae8e9ea658314574231d382078937592790b08c0' to '/srv/rebuilderd/tmp/tmpe8816rp1/libpcre2-8-0_10.42-4+b1_amd64.deb' dpkg-name: info: moved '08feddc7934ce4be3d7d4843c72208e3e448db39' to '/srv/rebuilderd/tmp/tmpogf0pd0e/libbrotli1_1.1.0-2+b3_amd64.deb' dpkg-name: info: moved 'fc5e5a14b7f03ed5756d45e29dde92d3d5b7c878' to '/srv/rebuilderd/tmp/tmp7_302aev/binutils-x86-64-linux-gnu_2.42-4_amd64.deb' dpkg-name: info: moved 'ab09ef6b7cce7ed7a8dda8e6cf03b473aa3ab7a6' to '/srv/rebuilderd/tmp/tmpyq2s04po/libbz2-1.0_1.0.8-5.1_amd64.deb' dpkg-name: info: moved '27c14ea1615f98d0308edcfbef55ec479bd9313d' to '/srv/rebuilderd/tmp/tmpbtgz72cy/libdeflate0_1.20-1_amd64.deb' dpkg-name: info: moved 'de7411c8e4066e7a0d29bcc080dfb393190006de' to '/srv/rebuilderd/tmp/tmp06s_xdtp/bzip2_1.0.8-5.1_amd64.deb' dpkg-name: info: moved '370a1e4269483b86ed976bfd984b37f72b2e1e87' to '/srv/rebuilderd/tmp/tmpmseq2k1g/libhwasan0_14-20240315-1_amd64.deb' dpkg-name: info: moved 'af77f63b80397585513159c7dba9c86d44357a78' to '/srv/rebuilderd/tmp/tmpd_9dsisl/libkrb5support0_1.20.1-6_amd64.deb' dpkg-name: info: moved '019c9078921ed0b5a527b36ae1490ec9a6624e80' to '/srv/rebuilderd/tmp/tmps235hvrk/gcc-14-base_14-20240315-1_amd64.deb' dpkg-name: info: moved 'fa3634338dbca4fca3a2715afb53c0527b26b0e3' to '/srv/rebuilderd/tmp/tmp6240wctc/libselinux1_3.5-2+b1_amd64.deb' dpkg-name: info: moved '847aa30b40ade54cca324a6d4826e6a324690648' to '/srv/rebuilderd/tmp/tmppbr985yn/g++-13_13.2.0-19_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpm_cbg__f/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8 as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8 Ign:1 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ InRelease Get:2 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ Release [462 B] Ign:3 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ Release.gpg Get:4 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ Packages [230 kB] Fetched 230 kB in 0s (19.1 MB/s) Reading package lists... usr-is-merged found -- running merged-usr setup hook dpkg-deb: building package 'usr-is-merged' in '/srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8/tmp/tmp.fZZnos583N/usr-is-merged.deb'. Selecting previously unselected package usr-is-merged. (Reading database ... 0 files and directories currently installed.) Preparing to unpack .../usr-is-merged.deb ... Unpacking usr-is-merged (1) ... touch: cannot touch '/run/needrestart/unpacked': Permission denied Setting up usr-is-merged (1) ... I: skipping apt-get update because it was already run I: downloading packages with apt... I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8 Ign:1 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ InRelease Get:2 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ Release [462 B] Ign:3 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ Release.gpg Fetched 462 B in 0s (0 B/s) Reading package lists... usr-is-merged found -- running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8 dummy usr-is-merged package installed -- running merged-usr essential hook Reading package lists... Building dependency tree... The following packages will be upgraded: usr-is-merged 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5572 B of archives. After this operation, 13.3 kB of additional disk space will be used. Get:1 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ usr-is-merged 39 [5572 B] Fetched 5572 B in 0s (0 B/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8/ (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 3724 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39_all.deb ... Unpacking usr-is-merged (39) over (1) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8/ Setting up usr-is-merged (39) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8/ I: installing remaining packages inside the chroot... I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpm_cbg__f/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8 Reading package lists... Building dependency tree... Reading state information... libncurses6 is already the newest version (6.4+20240113-1). libncurses6 set to manually installed. perl-modules-5.38 is already the newest version (5.38.2-3.2). perl-modules-5.38 set to manually installed. libgcrypt20 is already the newest version (1.10.3-2). libhtscodecs2 is already the newest version (1.6.0-1+b1). libhtscodecs2 set to manually installed. libasan8 is already the newest version (14-20240315-1). libasan8 set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1). libpsl5t64 set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-2+b1). libsasl2-2 is already the newest version (2.1.28+dfsg1-6). libsasl2-2 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg-3.1). libdebhelper-perl is already the newest version (13.15.2). libdebhelper-perl set to manually installed. libc-dev-bin is already the newest version (2.37-15.1). libc-dev-bin set to manually installed. libnettle8t64 is already the newest version (3.9.1-2.2). libnettle8t64 set to manually installed. libicu72 is already the newest version (72.1-4+b1). libicu72 set to manually installed. gzip is already the newest version (1.12-1.1). binutils is already the newest version (2.42-4). binutils set to manually installed. libbinutils is already the newest version (2.42-4). libbinutils set to manually installed. libhogweed6t64 is already the newest version (3.9.1-2.2). libhogweed6t64 set to manually installed. libstdc++-13-dev is already the newest version (13.2.0-19). libstdc++-13-dev set to manually installed. libcurl4-gnutls-dev is already the newest version (8.6.0-4). libcurl4-gnutls-dev set to manually installed. libudev1 is already the newest version (255.4-1+b1). usr-is-merged is already the newest version (39). libcap-ng0 is already the newest version (0.8.4-2). libgdbm6t64 is already the newest version (1.23-5.1). libgdbm6t64 set to manually installed. debianutils is already the newest version (5.17). libcom-err2 is already the newest version (1.47.0-2.4). libcom-err2 set to manually installed. libctf0 is already the newest version (2.42-4). libctf0 set to manually installed. autoconf is already the newest version (2.71-3). autoconf set to manually installed. debconf is already the newest version (1.5.86). libhts3t64 is already the newest version (1.19+ds-1.1+b1). libhts3t64 set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b1). libuchardet0 set to manually installed. dpkg is already the newest version (1.22.6). bsdextrautils is already the newest version (2.39.3-10). bsdextrautils set to manually installed. libcap2 is already the newest version (1:2.66-5). libgpg-error0 is already the newest version (1.47-3). rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libuuid1 is already the newest version (2.39.3-10). libcc1-0 is already the newest version (14-20240315-1). libcc1-0 set to manually installed. libmount1 is already the newest version (2.39.3-10). libidn2-0 is already the newest version (2.3.7-2). libidn2-0 set to manually installed. binutils-common is already the newest version (2.42-4). binutils-common set to manually installed. libgprofng0 is already the newest version (2.42-4). libgprofng0 set to manually installed. libaudit-common is already the newest version (1:3.1.2-2.1). g++-13-x86-64-linux-gnu is already the newest version (13.2.0-19). g++-13-x86-64-linux-gnu set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. mawk is already the newest version (1.3.4.20240123-1). pkgconf is already the newest version (1.8.1-1+b2). pkgconf set to manually installed. automake is already the newest version (1:1.16.5-1.3). automake set to manually installed. libhts-dev is already the newest version (1.19+ds-1.1+b1). libhts-dev set to manually installed. libkrb5-3 is already the newest version (1.20.1-6). libkrb5-3 set to manually installed. base-files is already the newest version (13). liblzma5 is already the newest version (5.6.0-0.2). libpam-modules is already the newest version (1.5.3-6). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libunistring5 is already the newest version (1.1-2). libunistring5 set to manually installed. libctf-nobfd0 is already the newest version (2.42-4). libctf-nobfd0 set to manually installed. perl is already the newest version (5.38.2-3.2). perl set to manually installed. init-system-helpers is already the newest version (1.66). libffi8 is already the newest version (3.4.6-1). libffi8 set to manually installed. libmagic-mgc is already the newest version (1:5.45-3). libmagic-mgc set to manually installed. gcc-13-base is already the newest version (13.2.0-19). gcc-13-base set to manually installed. libmagic1t64 is already the newest version (1:5.45-3). libmagic1t64 set to manually installed. libc6 is already the newest version (2.37-15.1). diffutils is already the newest version (1:3.10-1). libsasl2-modules-db is already the newest version (2.1.28+dfsg1-6). libsasl2-modules-db set to manually installed. libpam-modules-bin is already the newest version (1.5.3-6). libdpkg-perl is already the newest version (1.22.6). libdpkg-perl set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:13.2.0-7). cpp-x86-64-linux-gnu set to manually installed. gettext is already the newest version (0.21-14+b1). gettext set to manually installed. libquadmath0 is already the newest version (14-20240315-1). libquadmath0 set to manually installed. libubsan1 is already the newest version (14-20240315-1). libubsan1 set to manually installed. tar is already the newest version (1.35+dfsg-3). autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b3). librtmp1 set to manually installed. libseccomp2 is already the newest version (2.5.5-1). libseccomp2 set to manually installed. libldap-2.5-0 is already the newest version (2.5.16+dfsg-2). libldap-2.5-0 set to manually installed. cpp-13 is already the newest version (13.2.0-19). cpp-13 set to manually installed. gcc-13-x86-64-linux-gnu is already the newest version (13.2.0-19). gcc-13-x86-64-linux-gnu set to manually installed. make is already the newest version (4.3-4.1). make set to manually installed. cpp is already the newest version (4:13.2.0-7). cpp set to manually installed. debhelper is already the newest version (13.15.2). debhelper set to manually installed. libjansson4 is already the newest version (2.14-2+b2). libjansson4 set to manually installed. gcc is already the newest version (4:13.2.0-7). gcc set to manually installed. libgomp1 is already the newest version (14-20240315-1). libgomp1 set to manually installed. libsystemd0 is already the newest version (255.4-1+b1). man-db is already the newest version (2.12.0-3). man-db set to manually installed. libblkid1 is already the newest version (2.39.3-10). libmpc3 is already the newest version (1.3.1-1+b2). libmpc3 set to manually installed. gcc-13 is already the newest version (13.2.0-19). gcc-13 set to manually installed. libpam0g is already the newest version (1.5.3-6). libncursesw6 is already the newest version (6.4+20240113-1). libncursesw6 set to manually installed. sysvinit-utils is already the newest version (3.08-7). libp11-kit0 is already the newest version (0.25.3-4). libp11-kit0 set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. g++ is already the newest version (4:13.2.0-7). g++ set to manually installed. bsdutils is already the newest version (1:2.39.3-10). libpam-runtime is already the newest version (1.5.3-6). hostname is already the newest version (3.23+nmu2). libaudit1 is already the newest version (1:3.1.2-2.1). libitm1 is already the newest version (14-20240315-1). libitm1 set to manually installed. libnghttp2-14 is already the newest version (1.59.0-1+b1). libnghttp2-14 set to manually installed. libtinfo6 is already the newest version (6.4+20240113-1). bash is already the newest version (5.2.21-2). dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libpkgconf3 is already the newest version (1.8.1-1+b2). libpkgconf3 set to manually installed. ncurses-bin is already the newest version (6.4+20240113-1). libgdbm-compat4t64 is already the newest version (1.23-5.1). libgdbm-compat4t64 set to manually installed. dpkg-dev is already the newest version (1.22.6). dpkg-dev set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:13.2.0-7). g++-x86-64-linux-gnu set to manually installed. libc6-dev is already the newest version (2.37-15.1). libc6-dev set to manually installed. libdebconfclient0 is already the newest version (0.271+b2). libdeflate-dev is already the newest version (1.20-1). libdeflate-dev set to manually installed. liblzma-dev is already the newest version (5.6.0-0.2). liblzma-dev set to manually installed. libsub-override-perl is already the newest version (0.10-1). libsub-override-perl set to manually installed. libssh2-1t64 is already the newest version (1.11.0-4.1+b1). libssh2-1t64 set to manually installed. ncurses-base is already the newest version (6.4+20240113-1). autopoint is already the newest version (0.21-14). autopoint set to manually installed. cpp-13-x86-64-linux-gnu is already the newest version (13.2.0-19). cpp-13-x86-64-linux-gnu set to manually installed. findutils is already the newest version (4.9.0-5). libacl1 is already the newest version (2.3.2-1). libatomic1 is already the newest version (14-20240315-1). libatomic1 set to manually installed. libstdc++6 is already the newest version (14-20240315-1). libstdc++6 set to manually installed. libisl23 is already the newest version (0.26-3+b2). libisl23 set to manually installed. libssl3t64 is already the newest version (3.1.5-1.1). xz-utils is already the newest version (5.6.0-0.2). xz-utils set to manually installed. sed is already the newest version (4.9-2). libgnutls30t64 is already the newest version (3.8.3-1.1+b1). libgnutls30t64 set to manually installed. libzstd1 is already the newest version (1.5.5+dfsg2-2). libc-bin is already the newest version (2.37-15.1). util-linux is already the newest version (2.39.3-10). login is already the newest version (1:4.13+dfsg1-4). file is already the newest version (1:5.45-3). file set to manually installed. libtasn1-6 is already the newest version (4.19.0-3+b2). libtasn1-6 set to manually installed. libperl5.38t64 is already the newest version (5.38.2-3.2). libperl5.38t64 set to manually installed. gettext-base is already the newest version (0.21-14+b1). gettext-base set to manually installed. libcrypt1 is already the newest version (1:4.4.36-4). libcurl3t64-gnutls is already the newest version (8.6.0-4). libcurl3t64-gnutls set to manually installed. m4 is already the newest version (1.4.19-4). m4 set to manually installed. libpipeline1 is already the newest version (1.5.7-1+b2). libpipeline1 set to manually installed. pkgconf-bin is already the newest version (1.8.1-1+b2). pkgconf-bin set to manually installed. base-passwd is already the newest version (3.6.3). liblsan0 is already the newest version (14-20240315-1). liblsan0 set to manually installed. libsframe1 is already the newest version (2.42-4). libsframe1 set to manually installed. build-essential is already the newest version (12.10). build-essential set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:13.2.0-7). gcc-x86-64-linux-gnu set to manually installed. liblz4-1 is already the newest version (1.9.4-1+b2). libgcc-13-dev is already the newest version (13.2.0-19). libgcc-13-dev set to manually installed. sensible-utils is already the newest version (0.0.22). sensible-utils set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.13.1-1). libfile-stripnondeterminism-perl set to manually installed. libmpfr6 is already the newest version (4.2.1-1+b1). libmpfr6 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg-3.1). zlib1g-dev set to manually installed. libncurses-dev is already the newest version (6.4+20240113-1). libncurses-dev set to manually installed. libgssapi-krb5-2 is already the newest version (1.20.1-6). libgssapi-krb5-2 set to manually installed. libelf1t64 is already the newest version (0.191-1). libelf1t64 set to manually installed. coreutils is already the newest version (9.4-3.1). po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libtsan2 is already the newest version (14-20240315-1). libtsan2 set to manually installed. libcrypt-dev is already the newest version (1:4.4.36-4). libcrypt-dev set to manually installed. perl-base is already the newest version (5.38.2-3.2). groff-base is already the newest version (1.23.0-3+b1). groff-base set to manually installed. libgcc-s1 is already the newest version (14-20240315-1). libmd0 is already the newest version (1.1.0-2). libattr1 is already the newest version (1:2.5.2-1). libtool is already the newest version (2.4.7-7). libtool set to manually installed. libkeyutils1 is already the newest version (1.6.3-3). libkeyutils1 set to manually installed. dh-strip-nondeterminism is already the newest version (1.13.1-1). dh-strip-nondeterminism set to manually installed. libk5crypto3 is already the newest version (1.20.1-6). libk5crypto3 set to manually installed. linux-libc-dev is already the newest version (6.7.9-2). linux-libc-dev set to manually installed. dash is already the newest version (0.5.12-6). libsmartcols1 is already the newest version (2.39.3-10). grep is already the newest version (3.11-4). libdb5.3t64 is already the newest version (5.3.28+dfsg2-5+b1). libdb5.3t64 set to manually installed. libxml2 is already the newest version (2.9.14+dfsg-1.3+b2). libxml2 set to manually installed. libpcre2-8-0 is already the newest version (10.42-4+b1). libbrotli1 is already the newest version (1.1.0-2+b3). libbrotli1 set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.42-4). binutils-x86-64-linux-gnu set to manually installed. libbz2-1.0 is already the newest version (1.0.8-5.1). libdeflate0 is already the newest version (1.20-1). libdeflate0 set to manually installed. bzip2 is already the newest version (1.0.8-5.1). bzip2 set to manually installed. libhwasan0 is already the newest version (14-20240315-1). libhwasan0 set to manually installed. libkrb5support0 is already the newest version (1.20.1-6). libkrb5support0 set to manually installed. gcc-14-base is already the newest version (14-20240315-1). libselinux1 is already the newest version (3.5-2+b1). g++-13 is already the newest version (13.2.0-19). g++-13 set to manually installed. The following NEW packages will be installed: pkg-config 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 14.0 kB of archives. After this operation, 30.7 kB of additional disk space will be used. Get:1 copy:/srv/rebuilderd/tmp/tmpm_cbg__f/cache ./ pkg-config 1.8.1-1+b2 [14.0 kB] Fetched 14.0 kB in 0s (0 B/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8/ Selecting previously unselected package pkg-config:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13878 files and directories currently installed.) Preparing to unpack .../pkg-config_1.8.1-1+b2_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1+b2) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8/ Setting up pkg-config:amd64 (1.8.1-1+b2) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8 (Reading database ... 13884 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8 I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8 I: waiting for background processes to finish... I: PID 2768 exited with exit code 0 I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.exVJJ_9fF8... I: success in 25.6692 seconds Downloading dependency 134 of 185: libtasn1-6:amd64=4.19.0-3+b2 Downloading dependency 135 of 185: libperl5.38t64:amd64=5.38.2-3.2 Downloading dependency 136 of 185: gettext-base:amd64=0.21-14+b1 Downloading dependency 137 of 185: libcrypt1:amd64=1:4.4.36-4 Downloading dependency 138 of 185: libcurl3t64-gnutls:amd64=8.6.0-4 Downloading dependency 139 of 185: m4:amd64=1.4.19-4 Downloading dependency 140 of 185: libpipeline1:amd64=1.5.7-1+b2 Downloading dependency 141 of 185: pkgconf-bin:amd64=1.8.1-1+b2 Downloading dependency 142 of 185: base-passwd:amd64=3.6.3 Downloading dependency 143 of 185: liblsan0:amd64=14-20240315-1 Downloading dependency 144 of 185: libsframe1:amd64=2.42-4 Downloading dependency 145 of 185: build-essential:amd64=12.10 Downloading dependency 146 of 185: gcc-x86-64-linux-gnu:amd64=4:13.2.0-7 Downloading dependency 147 of 185: liblz4-1:amd64=1.9.4-1+b2 Downloading dependency 148 of 185: libgcc-13-dev:amd64=13.2.0-19 Downloading dependency 149 of 185: sensible-utils:amd64=0.0.22 Downloading dependency 150 of 185: libfile-stripnondeterminism-perl:amd64=1.13.1-1 Downloading dependency 151 of 185: libmpfr6:amd64=4.2.1-1+b1 Downloading dependency 152 of 185: zlib1g-dev:amd64=1:1.3.dfsg-3.1 Downloading dependency 153 of 185: libncurses-dev:amd64=6.4+20240113-1 Downloading dependency 154 of 185: libgssapi-krb5-2:amd64=1.20.1-6 Downloading dependency 155 of 185: libelf1t64:amd64=0.191-1 Downloading dependency 156 of 185: coreutils:amd64=9.4-3.1 Downloading dependency 157 of 185: po-debconf:amd64=1.0.21+nmu1 Downloading dependency 158 of 185: libtsan2:amd64=14-20240315-1 Downloading dependency 159 of 185: libcrypt-dev:amd64=1:4.4.36-4 Downloading dependency 160 of 185: perl-base:amd64=5.38.2-3.2 Downloading dependency 161 of 185: groff-base:amd64=1.23.0-3+b1 Downloading dependency 162 of 185: libgcc-s1:amd64=14-20240315-1 Downloading dependency 163 of 185: libmd0:amd64=1.1.0-2 Downloading dependency 164 of 185: libattr1:amd64=1:2.5.2-1 Downloading dependency 165 of 185: libtool:amd64=2.4.7-7 Downloading dependency 166 of 185: libkeyutils1:amd64=1.6.3-3 Downloading dependency 167 of 185: dh-strip-nondeterminism:amd64=1.13.1-1 Downloading dependency 168 of 185: libk5crypto3:amd64=1.20.1-6 Downloading dependency 169 of 185: linux-libc-dev:amd64=6.7.9-2 Downloading dependency 170 of 185: dash:amd64=0.5.12-6 Downloading dependency 171 of 185: libsmartcols1:amd64=2.39.3-10 Downloading dependency 172 of 185: grep:amd64=3.11-4 Downloading dependency 173 of 185: libdb5.3t64:amd64=5.3.28+dfsg2-5+b1 Downloading dependency 174 of 185: libxml2:amd64=2.9.14+dfsg-1.3+b2 Downloading dependency 175 of 185: libpcre2-8-0:amd64=10.42-4+b1 Downloading dependency 176 of 185: libbrotli1:amd64=1.1.0-2+b3 Downloading dependency 177 of 185: binutils-x86-64-linux-gnu:amd64=2.42-4 Downloading dependency 178 of 185: libbz2-1.0:amd64=1.0.8-5.1 Downloading dependency 179 of 185: libdeflate0:amd64=1.20-1 Downloading dependency 180 of 185: bzip2:amd64=1.0.8-5.1 Downloading dependency 181 of 185: libhwasan0:amd64=14-20240315-1 Downloading dependency 182 of 185: libkrb5support0:amd64=1.20.1-6 Downloading dependency 183 of 185: gcc-14-base:amd64=14-20240315-1 Downloading dependency 184 of 185: libselinux1:amd64=3.5-2+b1 Downloading dependency 185 of 185: g++-13:amd64=13.2.0-19 env --chdir=/srv/rebuilderd/tmp/rebuilderda3PVbF/out DEB_BUILD_OPTIONS=parallel=6 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 SOURCE_DATE_EPOCH=1711286253 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildamugWC/debrebuild.sbuildrc.jyntZbhnt0Oq sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --binNMU-changelog= segemehl (0.3.4-5+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for time_t -- amd64 / i386 Build Daemon (x86-csail-01) Sun, 24 Mar 2024 13:17:33 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildamugWC/debrebuild.tar.2PpLhXxDr6LP --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=segemehl-0.3.4 /srv/rebuilderd/tmp/rebuilderda3PVbF/inputs/segemehl_0.3.4-5.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3 (07 June 2025) on osuosl4-amd64.reproducible.osuosl.org +==============================================================================+ | segemehl 0.3.4-5+b1 (amd64) Sat, 09 Aug 2025 21:18:55 +0000 | +==============================================================================+ Package: segemehl Version: 0.3.4-5+b1 Source Version: 0.3.4-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildamugWC/debrebuild.tar.2PpLhXxDr6LP to /srv/rebuilderd/tmp/tmp.sbuild.m6J3DZGLQT... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sat, 09 Aug 2025 21:19:01 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderda3PVbF/inputs/segemehl_0.3.4-5.dsc exists in /srv/rebuilderd/tmp/rebuilderda3PVbF/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 09 Aug 2025 21:19:03 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-iQy1rm/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sat, 09 Aug 2025 21:19:07 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Sat, 09 Aug 2025 21:19:07 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.38+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.38-1 (2025-07-16) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-19 gcc-13_13.2.0-19 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-19 libstdc++6_14-20240315-1 linux-libc-dev_6.7.9-2 Package versions: autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.39.3-10 bsdutils_1:2.39.3-10 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-19 cpp-13-x86-64-linux-gnu_13.2.0-19 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.2 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-19 g++-13-x86-64-linux-gnu_13.2.0-19 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-19 gcc-13-base_13.2.0-19 gcc-13-x86-64-linux-gnu_13.2.0-19 gcc-14-base_14-20240315-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libarchive-zip-perl_1.68-1 libasan8_14-20240315-1 libatomic1_14-20240315-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.39.3-10 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5.1 libc-bin_2.37-15.1 libc-dev-bin_2.37-15.1 libc6_2.37-15.1 libc6-dev_2.37-15.1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240315-1 libcom-err2_1.47.0-2.4 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libcurl3t64-gnutls_8.6.0-4 libcurl4-gnutls-dev_8.6.0-4 libdb5.3t64_5.3.28+dfsg2-5+b1 libdebconfclient0_0.271+b2 libdebhelper-perl_13.15.2 libdeflate-dev_1.20-1 libdeflate0_1.20-1 libdpkg-perl_1.22.6 libelf1t64_0.191-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-19 libgcc-s1_14-20240315-1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1 libgdbm6t64_1.23-5.1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.3-1.1+b1 libgomp1_14-20240315-1 libgpg-error0_1.47-3 libgprofng0_2.42-4 libgssapi-krb5-2_1.20.1-6 libhogweed6t64_3.9.1-2.2 libhts-dev_1.19+ds-1.1+b1 libhts3t64_1.19+ds-1.1+b1 libhtscodecs2_1.6.0-1+b1 libhwasan0_14-20240315-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14-20240315-1 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-6 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-6 libkrb5support0_1.20.1-6 libldap-2.5-0_2.5.16+dfsg-2 liblsan0_14-20240315-1 liblz4-1_1.9.4-1+b2 liblzma-dev_5.6.0-0.2 liblzma5_5.6.0-0.2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.39.3-10 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncurses-dev_6.4+20240113-1 libncurses6_6.4+20240113-1 libncursesw6_6.4+20240113-1 libnettle8t64_3.9.1-2.2 libnghttp2-14_1.59.0-1+b1 libp11-kit0_0.25.3-4 libpam-modules_1.5.3-6 libpam-modules-bin_1.5.3-6 libpam-runtime_1.5.3-6 libpam0g_1.5.3-6 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-3.2 libpipeline1_1.5.7-1+b2 libpkgconf3_1.8.1-1+b2 libpsl5t64_0.21.2-1.1 libquadmath0_14-20240315-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b3 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.39.3-10 libssh2-1t64_1.11.0-4.1+b1 libssl3t64_3.1.5-1.1 libstdc++-13-dev_13.2.0-19 libstdc++6_14-20240315-1 libsub-override-perl_0.10-1 libsystemd0_255.4-1+b1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.4+20240113-1 libtool_2.4.7-7 libtsan2_14-20240315-1 libubsan1_14-20240315-1 libuchardet0_0.0.8-1+b1 libudev1_255.4-1+b1 libunistring5_1.1-2 libuuid1_2.39.3-10 libxml2_2.9.14+dfsg-1.3+b2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.7.9-2 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 patch_2.7.6-7 perl_5.38.2-3.2 perl-base_5.38.2-3.2 perl-modules-5.38_5.38.2-3.2 pkg-config_1.8.1-1+b2 pkgconf_1.8.1-1+b2 pkgconf-bin_1.8.1-1+b2 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.08-7 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.39.3-10 xz-utils_5.6.0-0.2 zlib1g_1:1.3.dfsg-3.1 zlib1g-dev_1:1.3.dfsg-3.1 +------------------------------------------------------------------------------+ | Build Sat, 09 Aug 2025 21:19:07 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: segemehl Binary: segemehl Architecture: any Version: 0.3.4-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.bioinf.uni-leipzig.de/Software/segemehl/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/segemehl Vcs-Git: https://salsa.debian.org/med-team/segemehl.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev Package-List: segemehl deb science optional arch=any Checksums-Sha1: 676d5d11382bc053fb1d5ce90bfbac1aeb26a9d9 244092 segemehl_0.3.4.orig.tar.xz 038818b4220c4f3dcd38b3ecfe41dc59860924ce 7788 segemehl_0.3.4-5.debian.tar.xz Checksums-Sha256: e498fb23e36d45a0d0035105812a747ca901af366d07dde431c25a49ee28abbc 244092 segemehl_0.3.4.orig.tar.xz 2215ecca17c8dc76082b2e4b45938d981373bac5a122d4afd3abe6dfcd0620ca 7788 segemehl_0.3.4-5.debian.tar.xz Files: 7cbc36ce09d0328089db4031663744a5 244092 segemehl_0.3.4.orig.tar.xz 430e922a977fe2eefee74bf5ffbea2b8 7788 segemehl_0.3.4-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmElI4kUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGIFA/+Mu4PVdVGhDGuCMESN0o5usyh1NjS OfWG2i0BFVWdhmma5I0HWa0kYbHRbBFlxBQmT31dbLb1krC1Sce7SU9BOzCkZmzm TGRexQcP8yBU1EELFCilXx2XJWOwcg646CqlAuwNqdCqsH7XWKkRUjKJkP6k3wG/ 7FvHb9V/bMlUU9UYO212w0NOzEG/csQoWj/wxla2I228SsAPBX//2mXOsUJ0iPj6 ITU3Ukz8XjZzVwYmuAgI0SoFhQoy63Ynkl6YlaQ5bW65ljRsE9whs1rfyMu40I0y tzzWkNoWtAhJNaeTDaepisCde2Z3l5KzuuI9mIjLChOlXTrdhpLs44pdQ7TVyHcu TL3rXjVWIRQMAFQfsHWaduk42ZtfZOq8jSJH/xk/GzUYUXR8uhl7/oKtgWIP3NSR VYmgeFtuI9qx5AZ9kDNYC7F4nAh/2D68R+/Tm5Kk+YqiN/CPMk5m50iRhr6ApkS4 xM1sr7s06xfZ+2rsBrbBqvGlVXm2Pnw6HNWeoHJuTOkpBVm9AkFygWG8FyVfFdwN 5D/JH0IOa44m4+5PJhECZIKbPNT+0LBbOXV/2vmzxJihKMaPpP2fxIYEstwHyEkp CMu4mTjx6wrBGjc8RQN4gKbztffY/4arUTQyD4W+s5qpFLhO1KHSDwnwPG1hoHcl oAw7JUKgMLDCKPY= =7qY1 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./segemehl_0.3.4-5.dsc: unsupported subcommand dpkg-source: info: extracting segemehl in /build/reproducible-path/segemehl-0.3.4 dpkg-source: info: unpacking segemehl_0.3.4.orig.tar.xz dpkg-source: info: unpacking segemehl_0.3.4-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying arm64.patch Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/reproducible-path/resolver-iQy1rm/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 0.3.4-5+b1 +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sat, 09 Aug 2025 21:19:14 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/segemehl-0.3.4/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/segemehl-0.3.4/debian/control" ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/segemehl-0.3.4/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/segemehl-0.3.4/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1711286253 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package segemehl dpkg-buildpackage: info: source version 0.3.4-5+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-csail-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j6 clean make[1]: Entering directory '/build/reproducible-path/segemehl-0.3.4' Cleaning... rm -f -r build segemehl haarz make[1]: Leaving directory '/build/reproducible-path/segemehl-0.3.4' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/segemehl-0.3.4' dh_auto_build -- all make -j6 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/reproducible-path/segemehl-0.3.4' Building... library for source build/kdchain.o Building... library for source build/stack.o Building... library for source build/debug.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/kdchain.o libs/kdchain.c Building... library for source build/annotation.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/stack.o libs/stack.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/debug.o libs/debug.c Building... library for source build/mapfrag.o Building... library for source build/filebuffer.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/annotation.o libs/annotation.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/mapfrag.o libs/mapfrag.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/filebuffer.o libs/filebuffer.c In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function ‘bl_annotationitemDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:149:23: note: in expansion of macro ‘FREEMEMORY’ 149 | if(item->chromname) FREEMEMORY(space, item->chromname); | ^~~~~~~~~~ libs/annotation.c:149:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 149 | if(item->chromname) FREEMEMORY(space, item->chromname); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:150:18: note: in expansion of macro ‘FREEMEMORY’ 150 | if(item->name) FREEMEMORY(space, item->name); | ^~~~~~~~~~ libs/annotation.c:150:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 150 | if(item->name) FREEMEMORY(space, item->name); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:151:21: note: in expansion of macro ‘FREEMEMORY’ 151 | if(item->itemRgb) FREEMEMORY(space, item->itemRgb); | ^~~~~~~~~~ libs/annotation.c:151:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 151 | if(item->itemRgb) FREEMEMORY(space, item->itemRgb); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:152:24: note: in expansion of macro ‘FREEMEMORY’ 152 | if(item->blockSizes) FREEMEMORY(space, item->blockSizes); | ^~~~~~~~~~ libs/annotation.c:152:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 152 | if(item->blockSizes) FREEMEMORY(space, item->blockSizes); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:153:25: note: in expansion of macro ‘FREEMEMORY’ 153 | if(item->blockStarts) FREEMEMORY(space, item->blockStarts); | ^~~~~~~~~~ libs/annotation.c:153:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 153 | if(item->blockStarts) FREEMEMORY(space, item->blockStarts); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:154:26: note: in expansion of macro ‘FREEMEMORY’ 154 | if(item->blockRefseqs) FREEMEMORY(space, item->blockRefseqs); | ^~~~~~~~~~ libs/annotation.c:154:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 154 | if(item->blockRefseqs) FREEMEMORY(space, item->blockRefseqs); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:155:26: note: in expansion of macro ‘FREEMEMORY’ 155 | if(item->blockStrands) FREEMEMORY(space, item->blockStrands); | ^~~~~~~~~~ libs/annotation.c:155:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 155 | if(item->blockStrands) FREEMEMORY(space, item->blockStrands); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:156:20: note: in expansion of macro ‘FREEMEMORY’ 156 | if(item->source) FREEMEMORY(space, item->source); | ^~~~~~~~~~ libs/annotation.c:156:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 156 | if(item->source) FREEMEMORY(space, item->source); | ^~ Building... library for source build/biofiles.o libs/annotation.c: In function ‘bl_annotationtrackDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:409:24: note: in expansion of macro ‘FREEMEMORY’ 409 | if(track->trackname) FREEMEMORY(space, track->trackname); | ^~~~~~~~~~ libs/annotation.c:409:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 409 | if(track->trackname) FREEMEMORY(space, track->trackname); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:410:23: note: in expansion of macro ‘FREEMEMORY’ 410 | if(track->filename) FREEMEMORY(space, track->filename); | ^~~~~~~~~~ libs/annotation.c:410:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 410 | if(track->filename) FREEMEMORY(space, track->filename); | ^~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/biofiles.o libs/biofiles.c include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:411:26: note: in expansion of macro ‘FREEMEMORY’ 411 | if(track->description) FREEMEMORY(space, track->description); | ^~~~~~~~~~ libs/annotation.c:411:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 411 | if(track->description) FREEMEMORY(space, track->description); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:418:20: note: in expansion of macro ‘FREEMEMORY’ 418 | if(track->items) FREEMEMORY(space, track->items) ; | ^~~~~~~~~~ libs/annotation.c:418:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 418 | if(track->items) FREEMEMORY(space, track->items) ; | ^~ libs/annotation.c: In function ‘bl_annotationmultitrackDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:455:20: note: in expansion of macro ‘FREEMEMORY’ 455 | if(track->items) FREEMEMORY(space, track->items) ; | ^~~~~~~~~~ libs/annotation.c:455:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 455 | if(track->items) FREEMEMORY(space, track->items) ; | ^~ Building... library for source build/alignment.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/alignment.o libs/alignment.c In file included from include/mathematics.h:117, from libs/alignment.c:38: libs/alignment.c: In function ‘wrapAlignment’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/alignment.c:97:18: note: in expansion of macro ‘FREEMEMORY’ 97 | if(al->rmvseq) FREEMEMORY(NULL, al->v); | ^~~~~~~~~~ libs/alignment.c:97:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 97 | if(al->rmvseq) FREEMEMORY(NULL, al->v); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/alignment.c:98:18: note: in expansion of macro ‘FREEMEMORY’ 98 | if(al->rmuseq) FREEMEMORY(NULL, al->u); | ^~~~~~~~~~ libs/alignment.c:98:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 98 | if(al->rmuseq) FREEMEMORY(NULL, al->u); | ^~ Building... library for source build/bitArray.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/bitArray.o libs/bitArray.c Building... library for source build/vqueue.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/vqueue.o libs/vqueue.c Building... library for source build/locus.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/locus.o libs/locus.c Building... library for source build/portable_endian.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/portable_endian.o libs/portable_endian.c Building... library for source build/seqclip.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/seqclip.o libs/seqclip.c Building... library for source build/gzip.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/gzip.o libs/gzip.c In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/sw.h:38, from libs/seqclip.c:44: libs/seqclip.c: In function ‘bl_Find3PrimeGreedy’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/seqclip.c:529:9: note: in expansion of macro ‘FREEMEMORY’ 529 | FREEMEMORY(space, adapter); | ^~~~~~~~~~ libs/seqclip.c:528:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 528 | if(adapter) | ^~ Building... library for source build/mappingqual.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/mappingqual.o libs/mappingqual.c Building... library for source build/md5.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/md5.o libs/md5.c Building... library for source build/memory.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/memory.o libs/memory.c Building... library for source build/sw.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/sw.o libs/sw.c Building... library for source build/queryalign.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/queryalign.o libs/queryalign.c Building... library for source build/aluruSort.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/aluruSort.o libs/aluruSort.c Building... library for source build/charsequence.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/charsequence.o libs/charsequence.c In file included from libs/charsequence.c:26: libs/charsequence.c: In function ‘destructSequence’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/charsequence.c:467:9: note: in expansion of macro ‘FREEMEMORY’ 467 | FREEMEMORY(space, sequence->sequence); | ^~~~~~~~~~ libs/charsequence.c:466:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 466 | if (sequence->sequence != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/charsequence.c:470:5: note: in expansion of macro ‘FREEMEMORY’ 470 | FREEMEMORY(space, sequence->alphabetname); | ^~~~~~~~~~ libs/charsequence.c:469:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 469 | if (sequence->alphabetname != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/charsequence.c:472:9: note: in expansion of macro ‘FREEMEMORY’ 472 | FREEMEMORY(space, sequence->url); | ^~~~~~~~~~ libs/charsequence.c:471:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 471 | if (sequence->url != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/charsequence.c:474:9: note: in expansion of macro ‘FREEMEMORY’ 474 | FREEMEMORY(space, sequence->info); | ^~~~~~~~~~ libs/charsequence.c:473:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 473 | if (sequence->info != NULL) | ^~ libs/charsequence.c: In function ‘loadSequence’: libs/charsequence.c:296:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 296 | fread(s, sizeof(CharSequence), 1, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/charsequence.c:304:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 304 | fread(s->description, sizeof(char), s->descrlen+1, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/charsequence.c:305:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 305 | fread(s->alphabetname, sizeof(char), s->namelen+1, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/charsequence.c:306:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fread(s->url, sizeof(char), s->urllen+1, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/charsequence.c:307:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 307 | fread(sequence, sizeof(char), s->length, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Building... library for source build/segemehl.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/segemehl.o libs/segemehl.c Building... library for source build/segemehl_helper.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/segemehl_helper.o libs/segemehl_helper.c Building... library for source build/merge.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/merge.o libs/merge.c In file included from include/stringutils.h:27, from libs/merge.c:34: libs/merge.c: In function ‘se_mergeWorker’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/merge.c:1096:20: note: in expansion of macro ‘FREEMEMORY’ 1096 | if(curkey) FREEMEMORY(NULL, curkey); | ^~~~~~~~~~ libs/merge.c:1096:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1096 | if(curkey) FREEMEMORY(NULL, curkey); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/merge.c:1216:26: note: in expansion of macro ‘FREEMEMORY’ 1216 | if(!reads && curkey) FREEMEMORY(NULL, curkey); | ^~~~~~~~~~ libs/merge.c:1216:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 1216 | if(!reads && curkey) FREEMEMORY(NULL, curkey); | ^~ Building... library for source build/vtprogressbar.o Building... library for source build/intervaltree.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/vtprogressbar.o libs/vtprogressbar.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/intervaltree.o libs/intervaltree.c Building... library for source build/bitVector.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/bitVector.o libs/bitVector.c In file included from include/mathematics.h:117, from libs/intervaltree.c:27: libs/intervaltree.c: In function ‘bl_intervaltreeDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/intervaltree.c:443:19: note: in expansion of macro ‘FREEMEMORY’ 443 | if(root->ncoll) FREEMEMORY(NULL, root->collisions); | ^~~~~~~~~~ libs/intervaltree.c:443:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 443 | if(root->ncoll) FREEMEMORY(NULL, root->collisions); | ^~ Building... library for source build/brendel.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/brendel.o libs/brendel.c Building... library for source build/haarz.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/haarz.o libs/haarz.c Building... library for source build/container.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/container.o libs/container.c Building... library for source build/junctions.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/junctions.o libs/junctions.c Building... library for source build/stringutils.o Building... library for source build/bitvectoralg.o Building... library for source build/bedfiles.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/stringutils.o libs/stringutils.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/bitvectoralg.o libs/bitvectoralg.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/bedfiles.o libs/bedfiles.c In file included from include/stringutils.h:27, from libs/stringutils.c:39: libs/stringutils.c: In function ‘destructStringset’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/stringutils.c:274:9: note: in expansion of macro ‘FREEMEMORY’ 274 | FREEMEMORY(space, s->strings[i].str); | ^~~~~~~~~~ libs/stringutils.c:273:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 273 | if(s->strings[i].str != NULL) | ^~ Building... library for source build/fileBins.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/fileBins.o libs/fileBins.c Building... library for source build/samio.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/samio.o libs/samio.c In file included from libs/fileBins.c:51: libs/fileBins.c: In function ‘bl_fileBinsSortLine’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/fileBins.c:901:18: note: in expansion of macro ‘FREEMEMORY’ 901 | if(fileSort) FREEMEMORY(space, line); | ^~~~~~~~~~ libs/fileBins.c:901:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 901 | if(fileSort) FREEMEMORY(space, line); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: libs/samio.c: In function ‘bl_samDestructTag’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:102:15: note: in expansion of macro ‘FREEMEMORY’ 102 | if(kv->tag) FREEMEMORY(NULL, kv->tag); | ^~~~~~~~~~ libs/samio.c:102:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 102 | if(kv->tag) FREEMEMORY(NULL, kv->tag); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:103:15: note: in expansion of macro ‘FREEMEMORY’ 103 | if(kv->val) FREEMEMORY(NULL, kv->val); | ^~~~~~~~~~ libs/samio.c:103:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 103 | if(kv->val) FREEMEMORY(NULL, kv->val); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:104:16: note: in expansion of macro ‘FREEMEMORY’ 104 | if(kv->type) FREEMEMORY(NULL, kv->type); | ^~~~~~~~~~ libs/samio.c:104:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 104 | if(kv->type) FREEMEMORY(NULL, kv->type); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:105:15: note: in expansion of macro ‘FREEMEMORY’ 105 | if(kv->key) FREEMEMORY(NULL, kv->key); | ^~~~~~~~~~ libs/samio.c:105:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 105 | if(kv->key) FREEMEMORY(NULL, kv->key); | ^~ libs/samio.c: In function ‘bl_samDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:112:21: note: in expansion of macro ‘FREEMEMORY’ 112 | if(samrec->qname) FREEMEMORY(NULL, samrec->qname); | ^~~~~~~~~~ libs/samio.c:112:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 112 | if(samrec->qname) FREEMEMORY(NULL, samrec->qname); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:113:21: note: in expansion of macro ‘FREEMEMORY’ 113 | if(samrec->rname) FREEMEMORY(NULL, samrec->rname); | ^~~~~~~~~~ libs/samio.c:113:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 113 | if(samrec->rname) FREEMEMORY(NULL, samrec->rname); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:114:21: note: in expansion of macro ‘FREEMEMORY’ 114 | if(samrec->cigar) FREEMEMORY(NULL, samrec->cigar); | ^~~~~~~~~~ libs/samio.c:114:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 114 | if(samrec->cigar) FREEMEMORY(NULL, samrec->cigar); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:115:21: note: in expansion of macro ‘FREEMEMORY’ 115 | if(samrec->rnext) FREEMEMORY(NULL, samrec->rnext); | ^~~~~~~~~~ libs/samio.c:115:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 115 | if(samrec->rnext) FREEMEMORY(NULL, samrec->rnext); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:116:21: note: in expansion of macro ‘FREEMEMORY’ 116 | if(samrec->seq) FREEMEMORY(NULL, samrec->seq); | ^~~~~~~~~~ libs/samio.c:116:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 116 | if(samrec->seq) FREEMEMORY(NULL, samrec->seq); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:117:21: note: in expansion of macro ‘FREEMEMORY’ 117 | if(samrec->qual) FREEMEMORY(NULL, samrec->qual); | ^~~~~~~~~~ libs/samio.c:117:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 117 | if(samrec->qual) FREEMEMORY(NULL, samrec->qual); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:121:20: note: in expansion of macro ‘FREEMEMORY’ 121 | if(samrec->tags) FREEMEMORY(NULL, samrec->tags); | ^~~~~~~~~~ libs/samio.c:121:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 121 | if(samrec->tags) FREEMEMORY(NULL, samrec->tags); | ^~ Building... library for source build/sufarray.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/sufarray.o libs/sufarray.c Building... library for source build/samheader.o Building... library for source build/fileio.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/samheader.o libs/samheader.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/fileio.o libs/fileio.c Building... library for source build/manopt.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/manopt.o libs/manopt.c Building... library for source build/vstack.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/vstack.o libs/vstack.c In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: libs/sufarray.c: In function ‘destructSufArr’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:613:5: note: in expansion of macro ‘FREEMEMORY’ 613 | FREEMEMORY(space, arr->lcpctab); | ^~~~~~~~~~ libs/sufarray.c:612:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 612 | if (arr->lcpctab != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:615:5: note: in expansion of macro ‘FREEMEMORY’ 615 | FREEMEMORY(space, arr->inv_suftab); | ^~~~~~~~~~ libs/sufarray.c:614:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 614 | if (arr->inv_suftab != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:619:5: note: in expansion of macro ‘FREEMEMORY’ 619 | FREEMEMORY(space, arr->idvtab); | ^~~~~~~~~~ libs/sufarray.c:618:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 618 | if (arr->idvtab != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:624:5: note: in expansion of macro ‘FREEMEMORY’ 624 | FREEMEMORY(space, arr->suflink); | ^~~~~~~~~~ libs/sufarray.c:620:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 620 | if (arr->suflink != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:627:5: note: in expansion of macro ‘FREEMEMORY’ 627 | FREEMEMORY(space, arr->chldtab); | ^~~~~~~~~~ libs/sufarray.c:626:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 626 | if (arr->chldtab != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:629:5: note: in expansion of macro ‘FREEMEMORY’ 629 | FREEMEMORY(space, arr->mdfive); | ^~~~~~~~~~ libs/sufarray.c:628:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 628 | if (arr->mdfive) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:631:5: note: in expansion of macro ‘FREEMEMORY’ 631 | FREEMEMORY(space, arr->llvtab); | ^~~~~~~~~~ libs/sufarray.c:630:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 630 | if(arr->llvtab != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:636:5: note: in expansion of macro ‘FREEMEMORY’ 636 | FREEMEMORY(space, arr->id); | ^~~~~~~~~~ libs/sufarray.c:632:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 632 | if(arr->id != NULL) | ^~ libs/fileio.c: In function ‘bl_rm’: libs/fileio.c:220:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 220 | system(cmd); | ^~~~~~~~~~~ libs/sufarray.c: In function ‘readSuffixarray’: libs/sufarray.c:428:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 428 | fread(&nmemb, sizeof(Uint), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:430:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 430 | fread(suftab, sizeof(Uint), nmemb, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:431:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 431 | fread(&flags, sizeof(char), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:436:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 436 | fread(lcpctab, sizeof(unsigned char), nmemb, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:438:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 438 | fread(&llvmemb, sizeof(Uint), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:440:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 440 | fread(llvtab, sizeof(PairUint), llvmemb, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:446:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 446 | fread(chldtab, sizeof(childtab), nmemb, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:484:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 484 | fread(suflink, sizeof(Uint), nmemb, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:508:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 508 | fread(id, sizeof(signed char), nmemb, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:511:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 511 | fread(&idvmemb, sizeof(Uint), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:515:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 515 | fread(idvtab, sizeof(PairLSint), idvmemb, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:519:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fread(idvutab, sizeof(PairUint), idvmemb, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/sufarray.c:530:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 530 | fread(mdfive, sizeof(unsigned char), 16, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Building... library for source build/bgzip.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/bgzip.o libs/bgzip.c Building... library for source build/bamio.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/bamio.o libs/bamio.c Building... library for source build/match.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/match.o libs/match.c In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from include/bamio.h:21, from libs/bamio.c:32: libs/bamio.c: In function ‘bl_bamCrossSectionDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/bamio.c:468:20: note: in expansion of macro ‘FREEMEMORY’ 468 | if(cs->x[k].n) FREEMEMORY(NULL, cs->x[k].d); | ^~~~~~~~~~ libs/bamio.c:468:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 468 | if(cs->x[k].n) FREEMEMORY(NULL, cs->x[k].d); | ^~ Building... library for source build/matealign.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/matealign.o libs/matealign.c Building... library for source build/kdseed.o In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/locus.h:41, from include/mapfrag.h:39, from libs/matealign.c:32: libs/matealign.c: In function ‘bl_matealign’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/matealign.c:313:15: note: in expansion of macro ‘FREEMEMORY’ 313 | if(npos[0]) FREEMEMORY(NULL, spos[0]); | ^~~~~~~~~~ libs/matealign.c:313:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 313 | if(npos[0]) FREEMEMORY(NULL, spos[0]); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/matealign.c:314:15: note: in expansion of macro ‘FREEMEMORY’ 314 | if(npos[1]) FREEMEMORY(NULL, spos[1]); | ^~~~~~~~~~ libs/matealign.c:314:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 314 | if(npos[1]) FREEMEMORY(NULL, spos[1]); | ^~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/kdseed.o libs/kdseed.c libs/matealign.c: In function ‘bl_greedypairMappingSets’: libs/matealign.c:76:15: warning: ‘m3’ may be used uninitialized [-Wmaybe-uninitialized] 76 | s->elem = bl_concatMapping(m3, m4); | ^~~~~~~~~~~~~~~~~~~~~~~~ libs/matealign.c:56:24: note: ‘m3’ was declared here 56 | mapping_t *m1, *m2, *m3, *m4; | ^~ libs/matealign.c:76:15: warning: ‘m4’ may be used uninitialized [-Wmaybe-uninitialized] 76 | s->elem = bl_concatMapping(m3, m4); | ^~~~~~~~~~~~~~~~~~~~~~~~ libs/matealign.c:56:29: note: ‘m4’ was declared here 56 | mapping_t *m1, *m2, *m3, *m4; | ^~ Building... library for source build/splitalign.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/splitalign.o libs/splitalign.c Building... library for source build/iupac.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/iupac.o libs/iupac.c In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: libs/splitalign.c: In function ‘bl_fixSplitAlignHoffmann’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1323:25: note: in expansion of macro ‘FREEMEMORY’ 1323 | if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); | ^~~~~~~~~~ libs/splitalign.c:1323:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 1323 | if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1324:25: note: in expansion of macro ‘FREEMEMORY’ 1324 | if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); | ^~~~~~~~~~ libs/splitalign.c:1324:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 1324 | if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1325:26: note: in expansion of macro ‘FREEMEMORY’ 1325 | if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); | ^~~~~~~~~~ libs/splitalign.c:1325:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 1325 | if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1326:26: note: in expansion of macro ‘FREEMEMORY’ 1326 | if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); | ^~~~~~~~~~ libs/splitalign.c:1326:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 1326 | if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); | ^~ libs/splitalign.c: In function ‘bl_fixSplitAlignBrendel’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1565:27: note: in expansion of macro ‘FREEMEMORY’ 1565 | if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); | ^~~~~~~~~~ libs/splitalign.c:1565:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1565 | if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1566:27: note: in expansion of macro ‘FREEMEMORY’ 1566 | if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); | ^~~~~~~~~~ libs/splitalign.c:1566:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1566 | if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1567:28: note: in expansion of macro ‘FREEMEMORY’ 1567 | if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); | ^~~~~~~~~~ libs/splitalign.c:1567:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1567 | if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1568:28: note: in expansion of macro ‘FREEMEMORY’ 1568 | if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); | ^~~~~~~~~~ libs/splitalign.c:1568:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1568 | if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); | ^~ Building... library for source build/radixsort.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/radixsort.o libs/radixsort.c Building... library for source build/gzidx.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/gzidx.o libs/gzidx.c Building... library for source build/nw.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/nw.o libs/nw.c Building... library for source build/multicharseq.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/multicharseq.o libs/multicharseq.c Building... library for source build/mathematics.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/mathematics.o libs/mathematics.c In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: libs/multicharseq.c: In function ‘destructMultiCharSeq’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/multicharseq.c:212:7: note: in expansion of macro ‘FREEMEMORY’ 212 | FREEMEMORY(space, mseq->markpos); | ^~~~~~~~~~ libs/multicharseq.c:211:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 211 | if (mseq->markpos != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/multicharseq.c:214:7: note: in expansion of macro ‘FREEMEMORY’ 214 | FREEMEMORY(space, mseq->map); | ^~~~~~~~~~ libs/multicharseq.c:213:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 213 | if (mseq->map != NULL) | ^~ include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/multicharseq.c:216:7: note: in expansion of macro ‘FREEMEMORY’ 216 | FREEMEMORY(space, mseq->ref); | ^~~~~~~~~~ libs/multicharseq.c:215:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 215 | if (mseq->ref != NULL) | ^~ In file included from include/mathematics.h:117, from libs/mathematics.c:38: libs/mathematics.c: In function ‘destructVector’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/mathematics.c:251:26: note: in expansion of macro ‘FREEMEMORY’ 251 | if (v->elements) FREEMEMORY(space, v->elements); | ^~~~~~~~~~ libs/mathematics.c:251:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 251 | if (v->elements) FREEMEMORY(space, v->elements); | ^~ Building... library for source build/pigeon.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/pigeon.o libs/pigeon.c Building... library for source build/sort.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/sort.o libs/sort.c In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/segemehl.h:44, from libs/pigeon.c:35: libs/pigeon.c: In function ‘pigeon’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/pigeon.c:352:13: note: in expansion of macro ‘FREEMEMORY’ 352 | if(check) FREEMEMORY(space, check); | ^~~~~~~~~~ libs/pigeon.c:352:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 352 | if(check) FREEMEMORY(space, check); | ^~ Building... library for source build/info.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/info.o libs/info.c Building... library for source build/karlin.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/karlin.o libs/karlin.c libs/info.c: In function ‘timestr_r’: libs/info.c:64:50: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from libs/info.c:41: In function ‘sprintf’, inlined from ‘timestr_r’ at libs/info.c:64:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 16 and 67 bytes into a destination of size 26 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ libs/info.c: In function ‘infomsg’: libs/info.c:64:50: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ In function ‘timestr_r’, inlined from ‘infomsg’ at libs/info.c:93:4: libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘timestr_r’ at libs/info.c:64:5, inlined from ‘infomsg’ at libs/info.c:93:4: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 16 and 67 bytes into a destination of size 26 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Building... library for source build/manout.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/segemehl-0.3.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build/manout.o libs/manout.c libs/info.c: In function ‘nfolevel’: libs/info.c:64:50: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ In function ‘timestr_r’, inlined from ‘nfolevel’ at libs/info.c:139:5: libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘timestr_r’ at libs/info.c:64:5, inlined from ‘nfolevel’ at libs/info.c:139:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 16 and 67 bytes into a destination of size 26 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Linking segemehl cc build/kdchain.o build/stack.o build/debug.o build/annotation.o build/mapfrag.o build/filebuffer.o build/biofiles.o build/alignment.o build/bitArray.o build/vqueue.o build/locus.o build/portable_endian.o build/seqclip.o build/gzip.o build/mappingqual.o build/md5.o build/memory.o build/sw.o build/queryalign.o build/aluruSort.o build/charsequence.o build/segemehl_helper.o build/merge.o build/vtprogressbar.o build/intervaltree.o build/bitVector.o build/brendel.o build/container.o build/junctions.o build/stringutils.o build/bitvectoralg.o build/bedfiles.o build/fileBins.o build/samio.o build/sufarray.o build/samheader.o build/fileio.o build/manopt.o build/vstack.o build/bgzip.o build/bamio.o build/match.o build/matealign.o build/kdseed.o build/splitalign.o build/iupac.o build/radixsort.o build/gzidx.o build/nw.o build/multicharseq.o build/mathematics.o build/pigeon.o build/sort.o build/info.o build/karlin.o build/manout.o build/segemehl.o -o ./segemehl.x -lm -lpthread -lz -lncurses -L libs -lform -lmenu -L/usr/local/lib/ `pkg-config --libs htslib` -Wl,-z,relro -Wl,-z,now Linking haarz cc build/kdchain.o build/stack.o build/debug.o build/annotation.o build/mapfrag.o build/filebuffer.o build/biofiles.o build/alignment.o build/bitArray.o build/vqueue.o build/locus.o build/portable_endian.o build/seqclip.o build/gzip.o build/mappingqual.o build/md5.o build/memory.o build/sw.o build/queryalign.o build/aluruSort.o build/charsequence.o build/segemehl_helper.o build/merge.o build/vtprogressbar.o build/intervaltree.o build/bitVector.o build/brendel.o build/container.o build/junctions.o build/stringutils.o build/bitvectoralg.o build/bedfiles.o build/fileBins.o build/samio.o build/sufarray.o build/samheader.o build/fileio.o build/manopt.o build/vstack.o build/bgzip.o build/bamio.o build/match.o build/matealign.o build/kdseed.o build/splitalign.o build/iupac.o build/radixsort.o build/gzidx.o build/nw.o build/multicharseq.o build/mathematics.o build/pigeon.o build/sort.o build/info.o build/karlin.o build/manout.o build/haarz.o -o ./haarz.x -lm -lpthread -lz -lncurses -L libs -lform -lmenu -L/usr/local/lib/ `pkg-config --libs htslib` -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/segemehl-0.3.4' make[1]: Leaving directory '/build/reproducible-path/segemehl-0.3.4' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/segemehl/ -a debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/segemehl-0.3.4' mv segemehl.x segemehl mv haarz.x haarz find . -name "*.x" dh_install make[1]: Leaving directory '/build/reproducible-path/segemehl-0.3.4' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package segemehl: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package segemehl: substitution variable ${misc:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'segemehl' in '../segemehl_0.3.4-5+b1_amd64.deb'. dpkg-deb: building package 'segemehl-dbgsym' in '../segemehl-dbgsym_0.3.4-5+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../segemehl_0.3.4-5+b1_amd64.buildinfo dpkg-genchanges --build=any -O../segemehl_0.3.4-5+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-08-09T21:19:27Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 09 Aug 2025 21:19:28 +0000 | +------------------------------------------------------------------------------+ segemehl_0.3.4-5+b1_amd64.changes: ---------------------------------- Format: 1.8 Date: Sun, 24 Mar 2024 13:17:33 +0000 Source: segemehl (0.3.4-5) Binary: segemehl segemehl-dbgsym Binary-Only: yes Architecture: amd64 Version: 0.3.4-5+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: amd64 / i386 Build Daemon (x86-csail-01) Description: segemehl - short read mapping with gaps Changes: segemehl (0.3.4-5+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for time_t Checksums-Sha1: 2c2d57dbc7276283666e35061e1df4552c11be8a 1691328 segemehl-dbgsym_0.3.4-5+b1_amd64.deb 74b5b495cefb5b46e17fb7ce25bce8af1ec4d072 6534 segemehl_0.3.4-5+b1_amd64.buildinfo 227412d05c8662fb7e14d59a6be39e1361fc59f8 310240 segemehl_0.3.4-5+b1_amd64.deb Checksums-Sha256: 6dbf71ab721f87f9b6418640df321f5a873fa65279ce2d293082bca9532bad9c 1691328 segemehl-dbgsym_0.3.4-5+b1_amd64.deb 93b350cac50000b14232889ebe7b870e822c5a2b9c318e57e5f555f948d5b170 6534 segemehl_0.3.4-5+b1_amd64.buildinfo 5505d69cc85cd320d3a9e03282682996ff8c29625265de09cea4255ca015df6b 310240 segemehl_0.3.4-5+b1_amd64.deb Files: 844f7031ec2583ebb0f7976b85bf3db5 1691328 debug optional segemehl-dbgsym_0.3.4-5+b1_amd64.deb 4e7e196a24d2cadc973892999e769c06 6534 science optional segemehl_0.3.4-5+b1_amd64.buildinfo 0d3714f034365d23eeeac36cb1a613ed 310240 science optional segemehl_0.3.4-5+b1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sat, 09 Aug 2025 21:19:28 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: segemehl (0.3.4-5) Binary: segemehl segemehl-dbgsym Architecture: amd64 Version: 0.3.4-5+b1 Binary-Only-Changes: segemehl (0.3.4-5+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for time_t . -- amd64 / i386 Build Daemon (x86-csail-01) Sun, 24 Mar 2024 13:17:33 +0000 Checksums-Md5: 844f7031ec2583ebb0f7976b85bf3db5 1691328 segemehl-dbgsym_0.3.4-5+b1_amd64.deb 0d3714f034365d23eeeac36cb1a613ed 310240 segemehl_0.3.4-5+b1_amd64.deb Checksums-Sha1: 2c2d57dbc7276283666e35061e1df4552c11be8a 1691328 segemehl-dbgsym_0.3.4-5+b1_amd64.deb 227412d05c8662fb7e14d59a6be39e1361fc59f8 310240 segemehl_0.3.4-5+b1_amd64.deb Checksums-Sha256: 6dbf71ab721f87f9b6418640df321f5a873fa65279ce2d293082bca9532bad9c 1691328 segemehl-dbgsym_0.3.4-5+b1_amd64.deb 5505d69cc85cd320d3a9e03282682996ff8c29625265de09cea4255ca015df6b 310240 segemehl_0.3.4-5+b1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 09 Aug 2025 21:19:27 +0000 Build-Path: /build/reproducible-path/segemehl-0.3.4 Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.39.3-10), bsdutils (= 1:2.39.3-10), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-19), cpp-13-x86-64-linux-gnu (= 13.2.0-19), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.2), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-19), g++-13-x86-64-linux-gnu (= 13.2.0-19), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-19), gcc-13-base (= 13.2.0-19), gcc-13-x86-64-linux-gnu (= 13.2.0-19), gcc-14-base (= 14-20240315-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240315-1), libatomic1 (= 14-20240315-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.39.3-10), libbrotli1 (= 1.1.0-2+b3), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-15.1), libc-dev-bin (= 2.37-15.1), libc6 (= 2.37-15.1), libc6-dev (= 2.37-15.1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240315-1), libcom-err2 (= 1.47.0-2.4), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libcurl3t64-gnutls (= 8.6.0-4), libcurl4-gnutls-dev (= 8.6.0-4), libdb5.3t64 (= 5.3.28+dfsg2-5+b1), libdebconfclient0 (= 0.271+b2), libdebhelper-perl (= 13.15.2), libdeflate-dev (= 1.20-1), libdeflate0 (= 1.20-1), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-19), libgcc-s1 (= 14-20240315-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1), libgdbm6t64 (= 1.23-5.1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.3-1.1+b1), libgomp1 (= 14-20240315-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libgssapi-krb5-2 (= 1.20.1-6), libhogweed6t64 (= 3.9.1-2.2), libhts-dev (= 1.19+ds-1.1+b1), libhts3t64 (= 1.19+ds-1.1+b1), libhtscodecs2 (= 1.6.0-1+b1), libhwasan0 (= 14-20240315-1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240315-1), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-6), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6), libkrb5support0 (= 1.20.1-6), libldap-2.5-0 (= 2.5.16+dfsg-2), liblsan0 (= 14-20240315-1), liblz4-1 (= 1.9.4-1+b2), liblzma-dev (= 5.6.0-0.2), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-10), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncurses-dev (= 6.4+20240113-1), libncurses6 (= 6.4+20240113-1), libncursesw6 (= 6.4+20240113-1), libnettle8t64 (= 3.9.1-2.2), libnghttp2-14 (= 1.59.0-1+b1), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-6), libpam-modules-bin (= 1.5.3-6), libpam-runtime (= 1.5.3-6), libpam0g (= 1.5.3-6), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-3.2), libpipeline1 (= 1.5.7-1+b2), libpkgconf3 (= 1.8.1-1+b2), libpsl5t64 (= 0.21.2-1.1), libquadmath0 (= 14-20240315-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b3), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b1), libsframe1 (= 2.42-4), libsmartcols1 (= 2.39.3-10), libssh2-1t64 (= 1.11.0-4.1+b1), libssl3t64 (= 3.1.5-1.1), libstdc++-13-dev (= 13.2.0-19), libstdc++6 (= 14-20240315-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtasn1-6 (= 4.19.0-3+b2), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240315-1), libubsan1 (= 14-20240315-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-10), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), pkg-config (= 1.8.1-1+b2), pkgconf (= 1.8.1-1+b2), pkgconf-bin (= 1.8.1-1+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.39.3-10), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1711286253" +------------------------------------------------------------------------------+ | Package contents Sat, 09 Aug 2025 21:19:29 +0000 | +------------------------------------------------------------------------------+ segemehl-dbgsym_0.3.4-5+b1_amd64.deb ------------------------------------ new Debian package, version 2.0. size 1691328 bytes: control archive=648 bytes. 432 bytes, 12 lines control 297 bytes, 3 lines md5sums Package: segemehl-dbgsym Source: segemehl (0.3.4-5) Version: 0.3.4-5+b1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1801 Depends: segemehl (= 0.3.4-5+b1) Section: debug Priority: optional Description: debug symbols for segemehl Build-Ids: 208cf8686b3784c264445f00642c4d39c37b93b0 b4f66cb473a6ddc66d45915ed729483f72793eb0 drwxr-xr-x root/root 0 2024-03-24 13:17 ./ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/lib/debug/.build-id/20/ -rw-r--r-- root/root 889832 2024-03-24 13:17 ./usr/lib/debug/.build-id/20/8cf8686b3784c264445f00642c4d39c37b93b0.debug drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/lib/debug/.build-id/b4/ -rw-r--r-- root/root 892728 2024-03-24 13:17 ./usr/lib/debug/.build-id/b4/f66cb473a6ddc66d45915ed729483f72793eb0.debug drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 47664 2024-03-24 13:17 ./usr/lib/debug/.dwz/x86_64-linux-gnu/segemehl.debug drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/share/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-24 13:17 ./usr/share/doc/segemehl-dbgsym -> segemehl segemehl_0.3.4-5+b1_amd64.deb ----------------------------- new Debian package, version 2.0. size 310240 bytes: control archive=1524 bytes. 1640 bytes, 30 lines control 820 bytes, 12 lines md5sums Package: segemehl Source: segemehl (0.3.4-5) Version: 0.3.4-5+b1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1283 Depends: libc6 (>= 2.34), libhts3t64 (>= 1.17), zlib1g (>= 1:1.2.2.4) Section: science Priority: optional Homepage: http://www.bioinf.uni-leipzig.de/Software/segemehl/ Description: short read mapping with gaps Segemehl is a software to map short sequencer reads to reference genomes. Segemehl implements a matching strategy based on enhanced suffix arrays (ESA). Segemehl accepts fasta and fastq queries (gzip'ed and bgzip'ed). In addition to the alignment of reads from standard DNA- and RNA-seq protocols, it also allows the mapping of bisulfite converted reads (Lister and Cokus) and implements a split read mapping strategy. The output of segemehl is a SAM or BAM formatted alignment file. In the case of split-read mapping, additional BED files are written to the disc. These BED files may be summarized with the postprocessing tool haarz. In the case of the alignment of bisulfite converted reads, raw methylation rates may also be called with haarz. . In brief, for each suffix of a read, segemehl aims to find the best-scoring seed. Seeds might contain insertions, deletions, and mismatches (differences). The number of differences allowed within a single seed is user-controlled and is crucial for the runtime of the program. Subsequently, seeds that undercut the user-defined E-value are passed on to an exact semi-global alignment procedure. Finally, reads with a minimum accuracy of percent are reported to the user. drwxr-xr-x root/root 0 2024-03-24 13:17 ./ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/bin/ -rwxr-xr-x root/root 642280 2024-03-24 13:17 ./usr/bin/haarz -rwxr-xr-x root/root 646536 2024-03-24 13:17 ./usr/bin/segemehl drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/share/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/share/doc/segemehl/ -rw-r--r-- root/root 545 2021-08-01 11:38 ./usr/share/doc/segemehl/README.test -rw-r--r-- root/root 220 2024-03-24 13:17 ./usr/share/doc/segemehl/changelog.Debian.amd64.gz -rw-r--r-- root/root 658 2024-03-24 13:17 ./usr/share/doc/segemehl/changelog.Debian.gz -rw-r--r-- root/root 1108 2021-08-16 11:22 ./usr/share/doc/segemehl/copyright drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/share/doc/segemehl/examples/ -rw-r--r-- root/root 75 2021-08-01 11:38 ./usr/share/doc/segemehl/examples/myseq.fa -rw-r--r-- root/root 258 2021-08-01 11:38 ./usr/share/doc/segemehl/examples/seq1.fa -rw-r--r-- root/root 93 2021-08-01 11:38 ./usr/share/doc/segemehl/examples/seq2.fa -rw-r--r-- root/root 548 2021-08-24 16:48 ./usr/share/doc/segemehl/run-unit-test drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-24 13:17 ./usr/share/man/man1/ -rw-r--r-- root/root 505 2024-03-24 13:17 ./usr/share/man/man1/haarz.1.gz -rw-r--r-- root/root 2427 2024-03-24 13:17 ./usr/share/man/man1/segemehl.1.gz +------------------------------------------------------------------------------+ | Post Build Sat, 09 Aug 2025 21:19:30 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 09 Aug 2025 21:19:30 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 09 Aug 2025 21:19:31 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 17936 Build-Time: 13 Distribution: unstable Host Architecture: amd64 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderda3PVbF/inputs/segemehl_0.3.4-5.dsc Machine Architecture: amd64 Package: segemehl Package-Time: 32 Source-Version: 0.3.4-5 Space: 17936 Status: successful Version: 0.3.4-5+b1 -------------------------------------------------------------------------------- Finished at 2025-08-09T21:19:27Z Build needed 00:00:32, 17936k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderda3PVbF/out checking segemehl-dbgsym_0.3.4-5+b1_amd64.deb: size differs for segemehl-dbgsym_0.3.4-5+b1_amd64.deb