=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdWp4pKu/inputs/mrtrix3_3.0.4-1+b1_amd64.buildinfo Source: mrtrix3 Version: 3.0.4-1 rebuilderd-worker node: osuosl4-amd64 +------------------------------------------------------------------------------+ | Downloading sources Sun, 15 Jun 2025 03:17:25 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [166 kB] Get:2 https://deb.debian.org/debian sid InRelease [208 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 2s (10.1 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.4-1.dsc' mrtrix3_3.0.4-1.dsc 2364 SHA256:07ac47fa9b18141adec7116078f93620dd8e1ad8b6dc6b4539177ec83b31e92c 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.4.orig.tar.gz' mrtrix3_3.0.4.orig.tar.gz 2551340 SHA256:f1d1aa289cfc3e46e3a8eca93594b23d061c6d50a0cd03727433a7e2cd14f71a 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.4-1.debian.tar.xz' mrtrix3_3.0.4-1.debian.tar.xz 9652 SHA256:fae513ffec0fe598cde595c869b88afc2dc6cb1bc19999f5ed3bd6b03519d412 f1d1aa289cfc3e46e3a8eca93594b23d061c6d50a0cd03727433a7e2cd14f71a mrtrix3_3.0.4.orig.tar.gz fae513ffec0fe598cde595c869b88afc2dc6cb1bc19999f5ed3bd6b03519d412 mrtrix3_3.0.4-1.debian.tar.xz 07ac47fa9b18141adec7116078f93620dd8e1ad8b6dc6b4539177ec83b31e92c mrtrix3_3.0.4-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sun, 15 Jun 2025 03:17:28 +0000 | +------------------------------------------------------------------------------+ Rebuilding mrtrix3=3.0.4-1 in /srv/rebuilderd/tmp/rebuilderdWp4pKu/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdWp4pKu/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdWp4pKu/inputs/mrtrix3_3.0.4-1+b1_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdWp4pKu/inputs/mrtrix3_3.0.4-1+b1_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mrtrix3-3.0.4 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid InRelease [198 kB] Get:2 http://snapshot.debian.org/archive/debian/20240324T085147Z sid InRelease [198 kB] Get:3 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 Packages [9964 kB] Get:4 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 Packages [9954 kB] Fetched 20.3 MB in 5s (3697 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20240314T094714Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20240324T085147Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtiffxx6 amd64 4.5.1+git230720-4 [149 kB] Fetched 149 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmznk262i/libtiffxx6_4.5.1+git230720-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5core5t64 amd64 5.15.10+dfsg-7.2+b1 [1835 kB] Fetched 1835 kB in 0s (44.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjq5fqtcv/libqt5core5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Fetched 159 kB in 0s (15.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp72bzqy8q/libblas-dev_3.12.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 coreutils amd64 9.4-3+b2 [2952 kB] Fetched 2952 kB in 0s (18.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptzdx90lo/coreutils_9.4-3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdpkg-perl all 1.22.6 [631 kB] Fetched 631 kB in 0s (51.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpltym4qpz/libdpkg-perl_1.22.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Fetched 52.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp06p89xdv/libxext6_1.3.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libbtf2 amd64 1:7.6.1+dfsg-1 [23.1 kB] Fetched 23.1 kB in 0s (1208 kB/s) dpkg-name: info: moved 'libbtf2_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpava9sj8n/libbtf2_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgcc-s1 amd64 14-20240303-1 [72.2 kB] Fetched 72.2 kB in 0s (3897 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzb7vwz9/libgcc-s1_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 octave-dev amd64 8.4.0-1+b2 [957 kB] Fetched 957 kB in 0s (25.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphtar089t/octave-dev_8.4.0-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfftw3-single3 amd64 3.3.10-1+b1 [807 kB] Fetched 807 kB in 0s (18.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpywd48ug2/libfftw3-single3_3.3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1 [16.0 kB] Fetched 16.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqmd2_o_8/libxkbcommon-x11-0_1.6.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2+b2 [290 kB] Fetched 290 kB in 0s (26.4 MB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.1.5-2+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp10kdcmis/libjpeg62-turbo-dev_2.1.5-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b1 [175 kB] Fetched 175 kB in 0s (5261 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ha7x4cr/libmetis5_5.1.0.dfsg-7+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libasan8 amd64 14-20240303-1 [2723 kB] Fetched 2723 kB in 0s (63.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92yikw6l/libasan8_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcurl4-openssl-dev amd64 8.6.0-3.2 [534 kB] Fetched 534 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprxfii9st/libcurl4-openssl-dev_8.6.0-3.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Fetched 8952 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpllgxgqaz/libkeyutils1_1.6.3-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgl-dev amd64 1.7.0-1 [100 kB] Fetched 100 kB in 0s (9758 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzt8m2zrl/libgl-dev_1.7.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Fetched 708 kB in 0s (51.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdy7axm6f/libgcrypt20_1.10.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 netbase all 6.4 [12.8 kB] Fetched 12.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6cctoqx8/netbase_6.4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libegl-mesa0 amd64 24.0.3-1 [119 kB] Fetched 119 kB in 0s (6959 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpowa3t09d/libegl-mesa0_24.0.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libptscotch-7.0 amd64 7.0.4-1+b1 [681 kB] Fetched 681 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4nv8gwic/libptscotch-7.0_7.0.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 man-db amd64 2.12.0-3 [1401 kB] Fetched 1401 kB in 0s (83.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl2h0qoyy/man-db_2.12.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgslcblas0 amd64 2.7.1+dfsg-6+b1 [107 kB] Fetched 107 kB in 0s (7702 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xxmjfux/libgslcblas0_2.7.1+dfsg-6+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Fetched 7346 kB in 0s (132 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6jeb9sfc/libz3-4_4.8.12-3.1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtool all 2.4.7-7 [517 kB] Fetched 517 kB in 0s (40.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn8y4j7vk/libtool_2.4.7-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Fetched 154 kB in 0s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbnbj1w3p/liblcms2-2_2.14-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Fetched 616 kB in 0s (45.4 MB/s) dpkg-name: info: moved 'login_1%3a4.13+dfsg1-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpmx9a97kx/login_4.13+dfsg1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libqscintilla2-qt5-15 amd64 2.14.1+dfsg-1+b2 [1118 kB] Fetched 1118 kB in 0s (31.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgd5t9bcx/libqscintilla2-qt5-15_2.14.1+dfsg-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 xkb-data all 2.41-2 [795 kB] Fetched 795 kB in 0s (57.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24kmy888/xkb-data_2.41-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsundials-nvecparallel-petsc6 amd64 6.4.1+dfsg1-3+b3 [58.7 kB] Fetched 58.7 kB in 0s (3869 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdjyd2auu/libsundials-nvecparallel-petsc6_6.4.1+dfsg1-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Fetched 10.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0ipmc9g/libsub-override-perl_0.10-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhsa-runtime64-1 amd64 5.7.1-1 [504 kB] Fetched 504 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgbyo58hl/libhsa-runtime64-1_5.7.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Fetched 328 kB in 0s (29.0 MB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.7-1_all.deb' to '/srv/rebuilderd/tmp/tmpaslozk2o/libx11-data_1.8.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5gui5t64 amd64 5.15.10+dfsg-7.2+b1 [3444 kB] Fetched 3444 kB in 0s (55.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7uhrjfqk/libqt5gui5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwayland-server0 amd64 1.22.0-2.1+b1 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_r7puqf5/libwayland-server0_1.22.0-2.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Fetched 8820 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwbknqcgo/libxshmfence1_1.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Fetched 262 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpje3b69a1/libpcre2-8-0_10.42-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsystemd0 amd64 255.4-1+b1 [364 kB] Fetched 364 kB in 0s (35.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ikrwp_0/libsystemd0_255.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Fetched 170 kB in 0s (7842 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk_qswqk7/libpsm-infinipath1_3.3+20.604758e7-6.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libctf-nobfd0 amd64 2.42-3 [152 kB] Fetched 152 kB in 0s (7391 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24972ubh/libctf-nobfd0_2.42-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Fetched 4880 kB in 0s (121 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplgw9si_9/liblapack-dev_3.12.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 usr-is-merged all 39 [5572 B] Fetched 5572 B in 0s (451 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpilli0b6m/usr-is-merged_39_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libreadline8t64 amd64 8.2-3.1 [167 kB] Fetched 167 kB in 0s (1657 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbe8er3kq/libreadline8t64_8.2-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libncurses-dev amd64 6.4+20240113-1 [349 kB] Fetched 349 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphchbpkgn/libncurses-dev_6.4+20240113-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Fetched 148 kB in 0s (2369 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7po_ltlw/libblas3_3.12.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libaudit-common all 1:3.1.2-2.1 [11.4 kB] Fetched 11.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a3.1.2-2.1_all.deb' to '/srv/rebuilderd/tmp/tmp_bnlw4bx/libaudit-common_3.1.2-2.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsframe1 amd64 2.42-3 [75.9 kB] Fetched 75.9 kB in 0s (2541 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmegi5i7a/libsframe1_2.42-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libglx-dev amd64 1.7.0-1 [15.5 kB] Fetched 15.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0sr99__z/libglx-dev_1.7.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Fetched 20.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkm26kat_/libcom-err2_1.47.0-2.4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-amesos-13.2 amd64 13.2.0-5+b1 [120 kB] Fetched 120 kB in 0s (6047 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqeph6mxp/libtrilinos-amesos-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 dpkg amd64 1.22.6 [1510 kB] Fetched 1510 kB in 0s (78.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwlsqko6k/dpkg_1.22.6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblqr-1-0 amd64 0.4.2-2.1+b1 [29.2 kB] Fetched 29.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0xjcxh8c/liblqr-1-0_0.4.2-2.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libglapi-mesa amd64 24.0.3-1 [36.3 kB] Fetched 36.3 kB in 0s (2135 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphp4mi_c_/libglapi-mesa_24.0.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Fetched 161 kB in 0s (7383 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmuhddjk0/libhwloc15_2.10.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpam-modules-bin amd64 1.5.3-6 [54.2 kB] Fetched 54.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbk2yczqf/libpam-modules-bin_1.5.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Fetched 50.8 kB in 0s (1570 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprgt3z9y2/base-passwd_3.6.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Fetched 190 kB in 0s (790 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppujdtmmf/libopenjp2-7_2.5.0-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Fetched 14.0 kB in 0s (41.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpod83tiu1/pkg-config_1.8.1-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 binutils-common amd64 2.42-3 [2538 kB] Fetched 2538 kB in 3s (1006 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb9fb0ljl/binutils-common_2.42-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Fetched 181 kB in 0s (1291 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9_m0a3d/libnl-route-3-200_3.7.0-0.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.1 [131 kB] Fetched 131 kB in 1s (126 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp84g052v1/libhdf5-cpp-103-1t64_1.10.10+repack-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Fetched 1180 kB in 0s (54.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa1oiaeba/groff-base_1.23.0-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpython3.11-stdlib amd64 3.11.8-3 [1791 kB] Fetched 1791 kB in 1s (1574 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmply621pov/libpython3.11-stdlib_3.11.8-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libinput-bin amd64 1.25.0-1+b1 [24.8 kB] Fetched 24.8 kB in 0s (1479 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyov4v858/libinput-bin_1.25.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblerc-dev amd64 4.0.0+ds-4+b1 [175 kB] Fetched 175 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0doy3yih/liblerc-dev_4.0.0+ds-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Fetched 313 kB in 0s (629 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphzuy4spl/libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libstdc++-13-dev amd64 13.2.0-18 [2211 kB] Fetched 2211 kB in 3s (877 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnb9nfhnz/libstdc++-13-dev_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libamdhip64-5 amd64 5.7.1-1 [8755 kB] Fetched 8755 kB in 4s (2225 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp74t75zns/libamdhip64-5_5.7.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libx11-dev amd64 2:1.8.7-1 [875 kB] Fetched 875 kB in 0s (62.6 MB/s) dpkg-name: info: moved 'libx11-dev_2%3a1.8.7-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpiaasfw1y/libx11-dev_1.8.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Fetched 105 kB in 0s (9546 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr268xh57/libxcb-shm0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Fetched 23.6 kB in 0s (2339 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2b56qpv4/libffi8_3.4.6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Fetched 636 kB in 0s (47.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzutnxmiu/findutils_4.9.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Fetched 42.9 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.45-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp1__lcfzp/file_5.45-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-kokkos-13.2 amd64 13.2.0-5+b1 [107 kB] Fetched 107 kB in 0s (1034 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzx193m6/libtrilinos-kokkos-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Fetched 26.3 kB in 0s (2633 kB/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmplzxok5nu/libxdmcp6_1.1.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libinput10 amd64 1.25.0-1+b1 [128 kB] Fetched 128 kB in 0s (3791 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpximrvfab/libinput10_1.25.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libarpack2t64 amd64 3.9.1-1.1 [104 kB] Fetched 104 kB in 0s (5684 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuazb4tew/libarpack2t64_3.9.1-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libglvnd0 amd64 1.7.0-1 [51.3 kB] Fetched 51.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8t5p29r4/libglvnd0_1.7.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Fetched 107 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvs061iv0/libwebpdemux2_1.3.2-0.4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Fetched 19.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8sx4uupe/libfile-stripnondeterminism-perl_1.13.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Fetched 468 kB in 0s (8913 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmanw8uup/python3-setuptools_68.1.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Fetched 98.7 kB in 0s (9309 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbotv89b/xtrans-dev_1.4.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libscotch-7.0 amd64 7.0.4-1+b1 [411 kB] Fetched 411 kB in 0s (12.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lbdvlib/libscotch-7.0_7.0.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libjack-jackd2-0 amd64 1.9.21~dfsg-3+b3 [284 kB] Fetched 284 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpive658eh/libjack-jackd2-0_1.9.21~dfsg-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsensors5 amd64 1:3.6.0-9 [34.6 kB] Fetched 34.6 kB in 0s (0 B/s) dpkg-name: info: moved 'libsensors5_1%3a3.6.0-9_amd64.deb' to '/srv/rebuilderd/tmp/tmpd9tr0kr0/libsensors5_3.6.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 util-linux amd64 2.39.3-10 [1231 kB] Fetched 1231 kB in 0s (63.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7tv4wzs/util-linux_2.39.3-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Fetched 107 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpanh6dy1o/libxcb-dri3-0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Fetched 112 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplscxyini/libavahi-common-data_0.8-13+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-triutils-13.2 amd64 13.2.0-5+b1 [126 kB] Fetched 126 kB in 0s (3663 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpexqcrw8j/libtrilinos-triutils-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [39.7 kB] Fetched 39.7 kB in 0s (2744 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqlqf69df/ocl-icd-libopencl1_2.3.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gcc amd64 4:13.2.0-7 [5152 B] Fetched 5152 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a13.2.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmp5km19cbd/gcc_13.2.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Fetched 119 kB in 0s (8639 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.36-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpoyc3pzo6/libcrypt-dev_4.4.36-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdrm-common all 2.4.120-2 [7688 B] Fetched 7688 B in 0s (136 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeil5zhak/libdrm-common_2.4.120-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwmflite-0.2-7 amd64 0.2.13-1.1+b2 [75.4 kB] Fetched 75.4 kB in 0s (651 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiha969yo/libwmflite-0.2-7_0.2.13-1.1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libaec0 amd64 1.1.2-1 [23.4 kB] Fetched 23.4 kB in 1s (38.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphks3rzyp/libaec0_1.1.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libssl-dev amd64 3.1.5-1.1 [2474 kB] Fetched 2474 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmjpyam86/libssl-dev_3.1.5-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-epetraext-13.2 amd64 13.2.0-5+b1 [451 kB] Fetched 451 kB in 0s (9831 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd8p3nr8a/libtrilinos-epetraext-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libglu1-mesa amd64 9.0.2-1.1 [178 kB] Fetched 178 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzjb9vdu/libglu1-mesa_9.0.2-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB] Fetched 106 kB in 0s (2351 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpad99nxw7/libxcb-shape0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 grep amd64 3.11-4 [431 kB] Fetched 431 kB in 0s (36.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptnhoxdvm/grep_3.11-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 bc amd64 1.07.1-3+b2 [103 kB] Fetched 103 kB in 0s (5406 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6v57ijku/bc_1.07.1-3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (22.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkdeyuesy/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Fetched 59.0 kB in 0s (3157 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjmy0wu26/libnl-3-200_3.7.0-0.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Fetched 9332 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeshvuq0z/libpython3-stdlib_3.11.8-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5xml5t64 amd64 5.15.10+dfsg-7.2+b1 [123 kB] Fetched 123 kB in 0s (7760 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcrzn6my9/libqt5xml5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 perl-modules-5.38 all 5.38.2-3.2 [2899 kB] Fetched 2899 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx837aals/perl-modules-5.38_5.38.2-3.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Fetched 167 kB in 0s (16.3 MB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-2+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpbmawto2o/libjpeg62-turbo_2.1.5-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Fetched 431 kB in 0s (36.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wk0l_fj/ncurses-bin_6.4+20240113-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgdbm6t64 amd64 1.23-5.1 [72.7 kB] Fetched 72.7 kB in 0s (2611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppja89pa7/libgdbm6t64_1.23-5.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfftw3-dev amd64 3.3.10-1+b1 [2124 kB] Fetched 2124 kB in 0s (50.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqfmwvw3g/libfftw3-dev_3.3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libelf1t64 amd64 0.191-1 [189 kB] Fetched 189 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgwqbe_2z/libelf1t64_0.191-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgnutls30t64 amd64 3.8.3-1.1 [1425 kB] Fetched 1425 kB in 0s (18.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp508o2zqu/libgnutls30t64_3.8.3-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b1 [215 kB] Fetched 215 kB in 0s (4148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpee3a2eqb/libssh2-1t64_1.11.0-4.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 librdmacm1t64 amd64 50.0-2 [70.0 kB] Fetched 70.0 kB in 0s (1394 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp7ie98js/librdmacm1t64_50.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Fetched 33.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.10-1.1_amd64.deb' to '/srv/rebuilderd/tmp/tmpkka2et3j/libxrender1_0.9.10-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgl1 amd64 1.7.0-1 [89.7 kB] Fetched 89.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxncc7jmm/libgl1_1.7.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Fetched 284 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpriwxrfcq/libheif1_1.17.6-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Fetched 47.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpshjba131/libavahi-client3_0.8-13+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhwy1t64 amd64 1.0.7-8.1 [526 kB] Fetched 526 kB in 0s (40.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ybbbl2l/libhwy1t64_1.0.7-8.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Fetched 42.2 kB in 0s (4115 kB/s) dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpom_n3ilw/libxdmcp-dev_1.1.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Fetched 10.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnq8u14pp/hostname_3.23+nmu2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Fetched 245 kB in 1s (377 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubrbyn7x/libqhull-r8.0_2020.2-6+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtsan2 amd64 14-20240303-1 [2455 kB] Fetched 2455 kB in 1s (4545 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ewyir_r/libtsan2_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcurl3t64-gnutls amd64 8.6.0-3.2 [421 kB] Fetched 421 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu0moloii/libcurl3t64-gnutls_8.6.0-3.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libopengl-dev amd64 1.7.0-1 [5104 B] Fetched 5104 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpswoa24z2/libopengl-dev_1.7.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 texinfo all 7.1-3 [1748 kB] Fetched 1748 kB in 0s (41.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk8b6qlua/texinfo_7.1-3_all.deb' Downloading dependency 1 of 510: libtiffxx6:amd64=4.5.1+git230720-4 Downloading dependency 2 of 510: libqt5core5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 3 of 510: libblas-dev:amd64=3.12.0-3 Downloading dependency 4 of 510: coreutils:amd64=9.4-3+b2 Downloading dependency 5 of 510: libdpkg-perl:amd64=1.22.6 Downloading dependency 6 of 510: libxext6:amd64=2:1.3.4-1+b1 Downloading dependency 7 of 510: libbtf2:amd64=1:7.6.1+dfsg-1 Downloading dependency 8 of 510: libgcc-s1:amd64=14-20240303-1 Downloading dependency 9 of 510: octave-dev:amd64=8.4.0-1+b2 Downloading dependency 10 of 510: libfftw3-single3:amd64=3.3.10-1+b1 Downloading dependency 11 of 510: libxkbcommon-x11-0:amd64=1.6.0-1 Downloading dependency 12 of 510: libjpeg62-turbo-dev:amd64=1:2.1.5-2+b2 Downloading dependency 13 of 510: libmetis5:amd64=5.1.0.dfsg-7+b1 Downloading dependency 14 of 510: libasan8:amd64=14-20240303-1 Downloading dependency 15 of 510: libcurl4-openssl-dev:amd64=8.6.0-3.2 Downloading dependency 16 of 510: libkeyutils1:amd64=1.6.3-3 Downloading dependency 17 of 510: libgl-dev:amd64=1.7.0-1 Downloading dependency 18 of 510: libgcrypt20:amd64=1.10.3-2 Downloading dependency 19 of 510: netbase:amd64=6.4 Downloading dependency 20 of 510: libegl-mesa0:amd64=24.0.3-1 Downloading dependency 21 of 510: libptscotch-7.0:amd64=7.0.4-1+b1 Downloading dependency 22 of 510: man-db:amd64=2.12.0-3 Downloading dependency 23 of 510: libgslcblas0:amd64=2.7.1+dfsg-6+b1 Downloading dependency 24 of 510: libz3-4:amd64=4.8.12-3.1+b2 Downloading dependency 25 of 510: libtool:amd64=2.4.7-7 Downloading dependency 26 of 510: liblcms2-2:amd64=2.14-2+b1 Downloading dependency 27 of 510: login:amd64=1:4.13+dfsg1-4 Downloading dependency 28 of 510: libqscintilla2-qt5-15:amd64=2.14.1+dfsg-1+b2 Downloading dependency 29 of 510: xkb-data:amd64=2.41-2 Downloading dependency 30 of 510: libsundials-nvecparallel-petsc6:amd64=6.4.1+dfsg1-3+b3 Downloading dependency 31 of 510: libsub-override-perl:amd64=0.10-1 Downloading dependency 32 of 510: libhsa-runtime64-1:amd64=5.7.1-1 Downloading dependency 33 of 510: libx11-data:amd64=2:1.8.7-1 Downloading dependency 34 of 510: libqt5gui5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 35 of 510: libwayland-server0:amd64=1.22.0-2.1+b1 Downloading dependency 36 of 510: libxshmfence1:amd64=1.3-1 Downloading dependency 37 of 510: libpcre2-8-0:amd64=10.42-4+b1 Downloading dependency 38 of 510: libsystemd0:amd64=255.4-1+b1 Downloading dependency 39 of 510: libpsm-infinipath1:amd64=3.3+20.604758e7-6.3 Downloading dependency 40 of 510: libctf-nobfd0:amd64=2.42-3 Downloading dependency 41 of 510: liblapack-dev:amd64=3.12.0-3 Downloading dependency 42 of 510: usr-is-merged:amd64=39 Downloading dependency 43 of 510: libreadline8t64:amd64=8.2-3.1 Downloading dependency 44 of 510: libncurses-dev:amd64=6.4+20240113-1 Downloading dependency 45 of 510: libblas3:amd64=3.12.0-3 Downloading dependency 46 of 510: libaudit-common:amd64=1:3.1.2-2.1 Downloading dependency 47 of 510: libsframe1:amd64=2.42-3 Downloading dependency 48 of 510: libglx-dev:amd64=1.7.0-1 Downloading dependency 49 of 510: libcom-err2:amd64=1.47.0-2.4 Downloading dependency 50 of 510: libtrilinos-amesos-13.2:amd64=13.2.0-5+b1 Downloading dependency 51 of 510: dpkg:amd64=1.22.6 Downloading dependency 52 of 510: liblqr-1-0:amd64=0.4.2-2.1+b1 Downloading dependency 53 of 510: libglapi-mesa:amd64=24.0.3-1 Downloading dependency 54 of 510: libhwloc15:amd64=2.10.0-1+b1 Downloading dependency 55 of 510: libpam-modules-bin:amd64=1.5.3-6 Downloading dependency 56 of 510: base-passwd:amd64=3.6.3 Downloading dependency 57 of 510: libopenjp2-7:amd64=2.5.0-2+b3 Downloading dependency 58 of 510: pkg-config:amd64=1.8.1-1+b2 Downloading dependency 59 of 510: binutils-common:amd64=2.42-3 Downloading dependency 60 of 510: libnl-route-3-200:amd64=3.7.0-0.3 Downloading dependency 61 of 510: libhdf5-cpp-103-1t64:amd64=1.10.10+repack-3.1 Downloading dependency 62 of 510: groff-base:amd64=1.23.0-3+b1 Downloading dependency 63 of 510: libpython3.11-stdlib:amd64=3.11.8-3 Downloading dependency 64 of 510: libinput-bin:amd64=1.25.0-1+b1 Downloading dependency 65 of 510: liblerc-dev:amd64=4.0.0+ds-4+b1 Downloading dependency 66 of 510: libxml-libxml-perl:amd64=2.0207+dfsg+really+2.0134-1+b3 Downloading dependency 67 of 510: libstdc++-13-dev:amd64=13.2.0-18 Downloading dependency 68 of 510: libamdhip64-5:amd64=5.7.1-1 Downloading dependency 69 of 510: libx11-dev:amd64=2:1.8.7-1 Downloading dependency 70 of 510: libxcb-shm0:amd64=1.15-1 Downloading dependency 71 of 510: libffi8:amd64=3.4.6-1 Downloading dependency 72 of 510: findutils:amd64=4.9.0-5 Downloading dependency 73 of 510: file:amd64=1:5.45-3 Downloading dependency 74 of 510: libtrilinos-kokkos-13.2:amd64=13.2.0-5+b1 Downloading dependency 75 of 510: libxdmcp6:amd64=1:1.1.2-3 Downloading dependency 76 of 510: libinput10:amd64=1.25.0-1+b1 Downloading dependency 77 of 510: libarpack2t64:amd64=3.9.1-1.1 Downloading dependency 78 of 510: libglvnd0:amd64=1.7.0-1 Downloading dependency 79 of 510: libwebpdemux2:amd64=1.3.2-0.4+b1 Downloading dependency 80 of 510: libfile-stripnondeterminism-perl:amd64=1.13.1-1 Downloading dependency 81 of 510: python3-setuptools:amd64=68.1.2-2 Downloading dependency 82 of 510: xtrans-dev:amd64=1.4.0-1 Downloading dependency 83 of 510: libscotch-7.0:amd64=7.0.4-1+b1 Downloading dependency 84 of 510: libjack-jackd2-0:amd64=1.9.21~dfsg-3+b3 Downloading dependency 85 of 510: libsensors5:amd64=1:3.6.0-9 Downloading dependency 86 of 510: util-linux:amd64=2.39.3-10 Downloading dependency 87 of 510: libxcb-dri3-0:amd64=1.15-1 Downloading dependency 88 of 510: libavahi-common-data:amd64=0.8-13+b2 Downloading dependency 89 of 510: libtrilinos-triutils-13.2:amd64=13.2.0-5+b1 Downloading dependency 90 of 510: ocl-icd-libopencl1:amd64=2.3.2-1 Downloading dependency 91 of 510: gcc:amd64=4:13.2.0-7 Downloading dependency 92 of 510: libcrypt-dev:amd64=1:4.4.36-4 Downloading dependency 93 of 510: libdrm-common:amd64=2.4.120-2 Downloading dependency 94 of 510: libwmflite-0.2-7:amd64=0.2.13-1.1+b2 Downloading dependency 95 of 510: libaec0:amd64=1.1.2-1 Downloading dependency 96 of 510: libssl-dev:amd64=3.1.5-1.1 Downloading dependency 97 of 510: libtrilinos-epetraext-13.2:amd64=13.2.0-5+b1 Downloading dependency 98 of 510: libglu1-mesa:amd64=9.0.2-1.1 Downloading dependency 99 of 510: libxcb-shape0:amd64=1.15-1 Downloading dependency 100 of 510: grep:amd64=3.11-4 Downloading dependency 101 of 510: bc:amd64=1.07.1-3+b2 Downloading dependency 102 of 510: po-debconf:amd64=1.0.21+nmu1 Downloading dependency 103 of 510: libnl-3-200:amd64=3.7.0-0.3 Downloading dependency 104 of 510: libpython3-stdlib:amd64=3.11.8-1 Downloading dependency 105 of 510: libqt5xml5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 106 of 510: perl-modules-5.38:amd64=5.38.2-3.2 Downloading dependency 107 of 510: libjpeg62-turbo:amd64=1:2.1.5-2+b2 Downloading dependency 108 of 510: ncurses-bin:amd64=6.4+20240113-1 Downloading dependency 109 of 510: libgdbm6t64:amd64=1.23-5.1 Downloading dependency 110 of 510: libfftw3-dev:amd64=3.3.10-1+b1 Downloading dependency 111 of 510: libelf1t64:amd64=0.191-1 Downloading dependency 112 of 510: libgnutls30t64:amd64=3.8.3-1.1 Downloading dependency 113 of 510: libssh2-1t64:amd64=1.11.0-4.1+b1 Downloading dependency 114 of 510: librdmacm1t64:amd64=50.0-2 Downloading dependency 115 of 510: libxrender1:amd64=1:0.9.10-1.1 Downloading dependency 116 of 510: libgl1:amd64=1.7.0-1 Downloading dependency 117 of 510: libheif1:amd64=1.17.6-1+b2 Downloading dependency 118 of 510: libavahi-client3:amd64=0.8-13+b2 Downloading dependency 119 of 510: libhwy1t64:amd64=1.0.7-8.1 Downloading dependency 120 of 510: libxdmcp-dev:amd64=1:1.1.2-3 Downloading dependency 121 of 510: hostname:amd64=3.23+nmu2 Downloading dependency 122 of 510: libqhull-r8.0:amd64=2020.2-6+b1 Downloading dependency 123 of 510: libtsan2:amd64=14-20240303-1 Downloading dependency 124 of 510: libcurl3t64-gnutls:amd64=8.6.0-3.2 Downloading dependency 125 of 510: libopengl-dev:amd64=1.7.0-1 Downloading dependency 126 of 510: texinfo:amd64=7.1-3 Downloading dependency 127 of 510: libc6-dev:amd64=2.37-15.1Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libc6-dev amd64 2.37-15.1 [1905 kB] Fetched 1905 kB in 0s (89.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpph6bdnbg/libc6-dev_2.37-15.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Fetched 109 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu4bd1pmc/libxcb-sync1_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gcc-13-base amd64 13.2.0-18 [43.5 kB] Fetched 43.5 kB in 0s (3330 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjheyx4p0/gcc-13-base_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsundials-sunmatrix4 amd64 6.4.1+dfsg1-3+b3 [105 kB] Fetched 105 kB in 0s (5824 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdubj5j6n/libsundials-sunmatrix4_6.4.1+dfsg1-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 openssh-client amd64 1:9.7p1-2 [962 kB] Fetched 962 kB in 0s (22.4 MB/s) dpkg-name: info: moved 'openssh-client_1%3a9.7p1-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpd60otpf4/openssh-client_9.7p1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Fetched 21.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuaml50c1/libnuma1_2.0.18-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Fetched 144 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7t2e5s8d/libxcb1_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Fetched 181 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzmrjh8g7/libxcb1-dev_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 imagemagick amd64 8:6.9.12.98+dfsg1-5.2 [19.4 kB] Fetched 19.4 kB in 0s (1654 kB/s) dpkg-name: info: moved 'imagemagick_8%3a6.9.12.98+dfsg1-5.2_amd64.deb' to '/srv/rebuilderd/tmp/tmpswpapb4u/imagemagick_6.9.12.98+dfsg1-5.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfftw3-bin amd64 3.3.10-1+b1 [52.3 kB] Fetched 52.3 kB in 0s (3099 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1_414bh0/libfftw3-bin_3.3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgraphicsmagick++-q16-12t64 amd64 1.4+really1.3.42-1.1+b1 [128 kB] Fetched 128 kB in 0s (6842 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ut3zqu7/libgraphicsmagick++-q16-12t64_1.4+really1.3.42-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblsan0 amd64 14-20240303-1 [1201 kB] Fetched 1201 kB in 1s (1047 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_yg3hg_6/liblsan0_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsemanage2 amd64 3.5-1+b2 [90.3 kB] Fetched 90.3 kB in 0s (568 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07zbn6ib/libsemanage2_3.5-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 perl amd64 5.38.2-3.2 [236 kB] Fetched 236 kB in 0s (18.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg92a62_j/perl_5.38.2-3.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libucx0 amd64 1.16.0+ds-4 [1108 kB] Fetched 1108 kB in 1s (1347 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmhp0qh8r/libucx0_1.16.0+ds-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libqt5svg5 amd64 5.15.10-2+b2 [134 kB] Fetched 134 kB in 0s (280 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp8lw_qiv/libqt5svg5_5.15.10-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libstdc++6 amd64 14-20240303-1 [713 kB] Fetched 713 kB in 1s (723 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcueikb3t/libstdc++6_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Fetched 18.3 kB in 0s (1066 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx55hea8s/libxcb-render-util0_0.3.9-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Fetched 1041 kB in 0s (66.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5qmmjws9/libeigen3-dev_3.4.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libvorbisenc2 amd64 1.3.7-2 [75.9 kB] Fetched 75.9 kB in 0s (6806 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3duz4e07/libvorbisenc2_1.3.7-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Fetched 58.5 kB in 0s (5762 kB/s) dpkg-name: info: moved 'libice6_2%3a1.0.10-1_amd64.deb' to '/srv/rebuilderd/tmp/tmptzq0pk5_/libice6_1.0.10-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Fetched 2407 kB in 0s (92.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcnze8koc/liblapack3_3.12.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgomp1 amd64 14-20240303-1 [136 kB] Fetched 136 kB in 0s (5884 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xh4h5d4/libgomp1_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Fetched 1492 kB in 0s (54.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb3vadaec/bash_5.2.21-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Fetched 295 kB in 0s (22.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplv8u_4gu/libzstd1_1.5.5+dfsg2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpam-runtime all 1.5.3-6 [140 kB] Fetched 140 kB in 0s (8278 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpznare00c/libpam-runtime_1.5.3-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [41.3 kB] Fetched 41.3 kB in 0s (4128 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglnlewaw/libgl2ps1.4_1.4.2+dfsg1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libopengl0 amd64 1.7.0-1 [30.8 kB] Fetched 30.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn5jx55dx/libopengl0_1.7.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libperl5.38t64 amd64 5.38.2-3.2 [4266 kB] Fetched 4266 kB in 0s (118 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7a7__k6/libperl5.38t64_5.38.2-3.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 autopoint all 0.21-14 [496 kB] Fetched 496 kB in 0s (38.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8s93lfdp/autopoint_0.21-14_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-xinerama0 amd64 1.15-1 [105 kB] Fetched 105 kB in 0s (6014 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3mosqawx/libxcb-xinerama0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libjansson4 amd64 2.14-2+b2 [39.9 kB] Fetched 39.9 kB in 0s (3645 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuzizkbs9/libjansson4_2.14-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5dbus5t64 amd64 5.15.10+dfsg-7.2+b1 [213 kB] Fetched 213 kB in 0s (1062 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuqxqt930/libqt5dbus5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhdf5-openmpi-103-1 amd64 1.10.10+repack-3+b1 [1300 kB] Fetched 1300 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpam7imfnv/libhdf5-openmpi-103-1_1.10.10+repack-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5opengl5t64 amd64 5.15.10+dfsg-7.2+b1 [149 kB] Fetched 149 kB in 0s (5223 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpet703jct/libqt5opengl5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 debianutils amd64 5.17 [89.0 kB] Fetched 89.0 kB in 0s (1527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyaf3dh9k/debianutils_5.17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libc6 amd64 2.37-15.1 [2752 kB] Fetched 2752 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfcetgnug/libc6_2.37-15.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-zoltan-13.2 amd64 13.2.0-5+b1 [386 kB] Fetched 386 kB in 1s (607 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe1qlwsbw/libtrilinos-zoltan-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Fetched 53.6 kB in 0s (249 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp33y08x5r/libyaml-0-2_0.2.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 cpp amd64 4:13.2.0-7 [1564 B] Fetched 1564 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a13.2.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpqw2aq0e_/cpp_13.2.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 binutils amd64 2.42-3 [80.8 kB] Fetched 80.8 kB in 0s (218 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4lhy1mm1/binutils_2.42-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Fetched 51.6 kB in 0s (729 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1cn8ysh_/libpciaccess0_0.17-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgsl27 amd64 2.7.1+dfsg-6+b1 [934 kB] Fetched 934 kB in 0s (5917 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmadvpk_o/libgsl27_2.7.1+dfsg-6+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Fetched 802 kB in 0s (51.9 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.7-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp3qbtmesd/libx11-6_1.8.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Fetched 287 kB in 0s (27.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg5fc1pxx/m4_1.4.19-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libflac12t64 amd64 1.4.3+ds-2.1 [200 kB] Fetched 200 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5x7_3y3/libflac12t64_1.4.3+ds-2.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsundials-sunlinsol3 amd64 6.4.1+dfsg1-3+b3 [203 kB] Fetched 203 kB in 0s (6822 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprwjbldsa/libsundials-sunlinsol3_6.4.1+dfsg1-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 xz-utils amd64 5.6.0-0.2 [489 kB] Fetched 489 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiqkuaxtk/xz-utils_5.6.0-0.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Fetched 268 kB in 0s (21.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplgck3r4o/ncurses-base_6.4+20240113-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Fetched 128 kB in 0s (8030 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpch13l6l9/libidn2-0_2.3.7-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Fetched 418 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw314u02j/libp11-kit0_0.25.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpython3.11-minimal amd64 3.11.8-3 [817 kB] Fetched 817 kB in 0s (21.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppm6u7i6c/libpython3.11-minimal_3.11.8-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5opengl5-dev amd64 5.15.10+dfsg-7.2+b1 [50.7 kB] Fetched 50.7 kB in 0s (1642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6o13xmi/libqt5opengl5-dev_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau-dev_1%3a1.0.9-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpsl0x6pk2/libxau-dev_1.0.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Fetched 13.1 kB in 0s (1185 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6e962ngn/libheif-plugin-libde265_1.17.6-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libccolamd3 amd64 1:7.6.1+dfsg-1 [37.7 kB] Fetched 37.7 kB in 0s (990 kB/s) dpkg-name: info: moved 'libccolamd3_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpzymgyfpl/libccolamd3_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwebpdecoder3 amd64 1.3.2-0.4+b1 [199 kB] Fetched 199 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjjdahqud/libwebpdecoder3_1.3.2-0.4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Fetched 17.8 kB in 0s (1249 kB/s) dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp9_ebjgqh/libxinerama1_1.1.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Fetched 692 kB in 0s (38.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2resqudp/libxml2_2.9.14+dfsg-1.3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libk5crypto3 amd64 1.20.1-6 [79.7 kB] Fetched 79.7 kB in 0s (7164 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptwhhp6l9/libk5crypto3_1.20.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsuperlu6 amd64 6.0.1+dfsg1-1+b1 [170 kB] Fetched 170 kB in 0s (3275 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq9tczmih/libsuperlu6_6.0.1+dfsg1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 openmpi-common all 4.1.6-7 [168 kB] Fetched 168 kB in 0s (4029 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3w4kwije/openmpi-common_4.1.6-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdeflate-dev amd64 1.19-1 [49.7 kB] Fetched 49.7 kB in 0s (2575 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvx9mp_t6/libdeflate-dev_1.19-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libamd3 amd64 1:7.6.1+dfsg-1 [38.8 kB] Fetched 38.8 kB in 0s (1880 kB/s) dpkg-name: info: moved 'libamd3_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp7mkq6h23/libamd3_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Fetched 813 kB in 0s (47.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmm0xf9l6/tar_1.35+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Fetched 19.7 kB in 0s (1368 kB/s) dpkg-name: info: moved 'libxau6_1%3a1.0.9-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpvlweg30n/libxau6_1.0.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 x11proto-dev all 2023.2-1 [598 kB] Fetched 598 kB in 0s (42.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz95lcxew/x11proto-dev_2023.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libopenmpi3t64 amd64 4.1.6-7 [2426 kB] Fetched 2426 kB in 0s (42.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0gaflnzs/libopenmpi3t64_4.1.6-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libgl1-mesa-dri amd64 24.0.3-1 [8282 kB] Fetched 8282 kB in 0s (37.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_gyq19lp/libgl1-mesa-dri_24.0.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Fetched 39.0 kB in 0s (2837 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl521x1ku/init-system-helpers_1.66_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libblkid1 amd64 2.39.3-10 [159 kB] Fetched 159 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6u8_njl8/libblkid1_2.39.3-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxkbcommon0 amd64 1.6.0-1 [108 kB] Fetched 108 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyedv5nfd/libxkbcommon0_1.6.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmpg123-0 amd64 1.32.5-1+b1 [148 kB] Fetched 148 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpibf25htq/libmpg123-0_1.32.5-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 base-files amd64 13 [70.6 kB] Fetched 70.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaldeylsn/base-files_13_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfido2-1 amd64 1.14.0-1+b1 [77.7 kB] Fetched 77.7 kB in 0s (1043 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxj3_g0lt/libfido2-1_1.14.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libbsd0 amd64 0.12.1-1 [129 kB] Fetched 129 kB in 0s (5067 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1a0b7awm/libbsd0_0.12.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Fetched 29.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpivl9jrgw/pkgconf-bin_1.8.1-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7 [1200 B] Fetched 1200 B in 0s (0 B/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a13.2.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpkkp6fapj/g++-x86-64-linux-gnu_13.2.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfltk-gl1.3t64 amd64 1.3.8-6.1 [62.4 kB] Fetched 62.4 kB in 0s (2524 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6vf4akpk/libfltk-gl1.3t64_1.3.8-6.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmd4c0 amd64 0.4.8-1+b1 [45.1 kB] Fetched 45.1 kB in 0s (2217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuadn9bey/libmd4c0_0.4.8-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhypre-2.28.0 amd64 2.28.0-8 [1640 kB] Fetched 1640 kB in 0s (20.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsciv9sxr/libhypre-2.28.0_2.28.0-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gcc-13 amd64 13.2.0-18 [479 kB] Fetched 479 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf36nczyy/gcc-13_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Fetched 317 kB in 0s (21.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvuzqseo5/fontconfig-config_2.15.0-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Fetched 305 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp85wjedhn/libbrotli1_1.1.0-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libc-dev-bin amd64 2.37-15.1 [47.1 kB] Fetched 47.1 kB in 0s (4281 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ahamwp5/libc-dev-bin_2.37-15.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Fetched 22.4 kB in 0s (1841 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplc2morhs/sensible-utils_0.0.22_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Fetched 36.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgfzworl7/libpkgconf3_1.8.1-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Fetched 1301 kB in 0s (52.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk6nv71ja/gettext_0.21-14+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libldap-2.5-0 amd64 2.5.16+dfsg-2 [185 kB] Fetched 185 kB in 0s (4679 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppgifkmtw/libldap-2.5-0_2.5.16+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-18 [11.2 MB] Fetched 11.2 MB in 0s (96.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90vj9w9q/g++-13-x86-64-linux-gnu_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Fetched 322 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2mvoswwj/libtiff6_4.5.1+git230720-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Fetched 20.6 kB in 0s (1993 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpybmykyte/libxml-sax-base-perl_1.09-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsmartcols1 amd64 2.39.3-10 [117 kB] Fetched 117 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnycsrt96/libsmartcols1_2.39.3-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Fetched 388 kB in 0s (29.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsxyv92lu/libfontconfig1_2.15.0-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5concurrent5t64 amd64 5.15.10+dfsg-7.2+b1 [43.7 kB] Fetched 43.7 kB in 0s (1770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7p0ypc6r/libqt5concurrent5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libreadline-dev amd64 8.2-3.1 [152 kB] Fetched 152 kB in 0s (3893 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpakvhqeoq/libreadline-dev_8.2-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmtdev1t64 amd64 1.1.6-1.1 [22.1 kB] Fetched 22.1 kB in 0s (1021 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfr9o5a01/libmtdev1t64_1.1.6-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcxsparse4 amd64 1:7.6.1+dfsg-1 [82.1 kB] Fetched 82.1 kB in 0s (4299 kB/s) dpkg-name: info: moved 'libcxsparse4_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0scplh2x/libcxsparse4_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Fetched 973 kB in 0s (11.7 MB/s) dpkg-name: info: moved 'passwd_1%3a4.13+dfsg1-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpjerjhyii/passwd_4.13+dfsg1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-epetra-13.2 amd64 13.2.0-5+b1 [441 kB] Fetched 441 kB in 0s (7476 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbdf0hjpn/libtrilinos-epetra-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 g++-13 amd64 13.2.0-18 [14.7 kB] Fetched 14.7 kB in 0s (752 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13v7dyj5/g++-13_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libvorbis0a amd64 1.3.7-2 [89.7 kB] Fetched 89.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1xx9w7qb/libvorbis0a_1.3.7-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 octave amd64 8.4.0-1+b2 [9735 kB] Fetched 9735 kB in 0s (96.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9mtv3tu7/octave_8.4.0-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libglx-mesa0 amd64 24.0.3-1 [151 kB] Fetched 151 kB in 0s (6375 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpezapxrcg/libglx-mesa0_24.0.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b2 [57.1 kB] Fetched 57.1 kB in 0s (2966 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgsfdt7qd/libsasl2-2_2.1.28+dfsg1-4+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b2 [19.6 kB] Fetched 19.6 kB in 0s (1209 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdw0qxorf/libsasl2-modules-db_2.1.28+dfsg1-4+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdav1d7 amd64 1.4.0-1 [546 kB] Fetched 546 kB in 0s (8778 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvcfn0x0/libdav1d7_1.4.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Fetched 26.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpui55tisv/python3-minimal_3.11.8-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libopus0 amd64 1.4-1+b1 [198 kB] Fetched 198 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbky5pbyz/libopus0_1.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-3+b1 [1566 kB] Fetched 1566 kB in 0s (33.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3951dowu/libscalapack-openmpi2.2_2.2.1-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 adduser all 3.137 [140 kB] Fetched 140 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpupmi_c4k/adduser_3.137_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Fetched 203 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpymdcd8_w/libdbus-1-3_1.14.10-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Fetched 241 kB in 0s (7042 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe278e7hu/python3-pkg-resources_68.1.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-trilinosss-13.2 amd64 13.2.0-5+b1 [87.9 kB] Fetched 87.9 kB in 0s (3545 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgb9pg87j/libtrilinos-trilinosss-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgprofng0 amd64 2.42-3 [771 kB] Fetched 771 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkq109gqr/libgprofng0_2.42-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Fetched 16.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3irikyq1/libxcb-keysyms1_0.4.0-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Fetched 463 kB in 0s (40.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9r6wdzbu/fontconfig_2.15.0-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-galeri-13.2 amd64 13.2.0-5+b1 [94.5 kB] Fetched 94.5 kB in 0s (4848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzsvt0xr/libtrilinos-galeri-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Fetched 489 kB in 0s (44.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_z6cittc/fonts-dejavu-mono_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 hdf5-helpers amd64 1.10.10+repack-3.1 [23.3 kB] Fetched 23.3 kB in 0s (1227 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4bzoc7w/hdf5-helpers_1.10.10+repack-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Fetched 110 kB in 0s (10.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0l1__q0i/dwz_0.15-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libkrb5support0 amd64 1.20.1-6 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg6lv4qz_/libkrb5support0_1.20.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libaudit1 amd64 1:3.1.2-2.1 [48.5 kB] Fetched 48.5 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a3.1.2-2.1_amd64.deb' to '/srv/rebuilderd/tmp/tmpyu8u2fn8/libaudit1_3.1.2-2.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b3 [58.5 kB] Fetched 58.5 kB in 0s (3246 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmfsdmqgt/librtmp1_2.4+20151223.gitfa8646d.1-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libegl1 amd64 1.7.0-1 [34.0 kB] Fetched 34.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_qrufbbl/libegl1_1.7.0-1_amd64.deb' Downloading dependency 128 of 510: libxcb-sync1:amd64=1.15-1 Downloading dependency 129 of 510: gcc-13-base:amd64=13.2.0-18 Downloading dependency 130 of 510: libsundials-sunmatrix4:amd64=6.4.1+dfsg1-3+b3 Downloading dependency 131 of 510: openssh-client:amd64=1:9.7p1-2 Downloading dependency 132 of 510: libnuma1:amd64=2.0.18-1 Downloading dependency 133 of 510: libxcb1:amd64=1.15-1 Downloading dependency 134 of 510: libxcb1-dev:amd64=1.15-1 Downloading dependency 135 of 510: imagemagick:amd64=8:6.9.12.98+dfsg1-5.2 Downloading dependency 136 of 510: libfftw3-bin:amd64=3.3.10-1+b1 Downloading dependency 137 of 510: libgraphicsmagick++-q16-12t64:amd64=1.4+really1.3.42-1.1+b1 Downloading dependency 138 of 510: liblsan0:amd64=14-20240303-1 Downloading dependency 139 of 510: libsemanage2:amd64=3.5-1+b2 Downloading dependency 140 of 510: perl:amd64=5.38.2-3.2 Downloading dependency 141 of 510: libucx0:amd64=1.16.0+ds-4 Downloading dependency 142 of 510: libqt5svg5:amd64=5.15.10-2+b2 Downloading dependency 143 of 510: libstdc++6:amd64=14-20240303-1 Downloading dependency 144 of 510: libxcb-render-util0:amd64=0.3.9-1+b1 Downloading dependency 145 of 510: libeigen3-dev:amd64=3.4.0-4 Downloading dependency 146 of 510: libvorbisenc2:amd64=1.3.7-2 Downloading dependency 147 of 510: libice6:amd64=2:1.0.10-1 Downloading dependency 148 of 510: liblapack3:amd64=3.12.0-3 Downloading dependency 149 of 510: libgomp1:amd64=14-20240303-1 Downloading dependency 150 of 510: bash:amd64=5.2.21-2 Downloading dependency 151 of 510: libzstd1:amd64=1.5.5+dfsg2-2 Downloading dependency 152 of 510: libpam-runtime:amd64=1.5.3-6 Downloading dependency 153 of 510: libgl2ps1.4:amd64=1.4.2+dfsg1-2 Downloading dependency 154 of 510: libopengl0:amd64=1.7.0-1 Downloading dependency 155 of 510: libperl5.38t64:amd64=5.38.2-3.2 Downloading dependency 156 of 510: autopoint:amd64=0.21-14 Downloading dependency 157 of 510: libxcb-xinerama0:amd64=1.15-1 Downloading dependency 158 of 510: libjansson4:amd64=2.14-2+b2 Downloading dependency 159 of 510: libqt5dbus5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading 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510: libqt5concurrent5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 222 of 510: libreadline-dev:amd64=8.2-3.1 Downloading dependency 223 of 510: libmtdev1t64:amd64=1.1.6-1.1 Downloading dependency 224 of 510: libcxsparse4:amd64=1:7.6.1+dfsg-1 Downloading dependency 225 of 510: passwd:amd64=1:4.13+dfsg1-4 Downloading dependency 226 of 510: libtrilinos-epetra-13.2:amd64=13.2.0-5+b1 Downloading dependency 227 of 510: g++-13:amd64=13.2.0-18 Downloading dependency 228 of 510: libvorbis0a:amd64=1.3.7-2 Downloading dependency 229 of 510: octave:amd64=8.4.0-1+b2 Downloading dependency 230 of 510: libglx-mesa0:amd64=24.0.3-1 Downloading dependency 231 of 510: libsasl2-2:amd64=2.1.28+dfsg1-4+b2 Downloading dependency 232 of 510: libsasl2-modules-db:amd64=2.1.28+dfsg1-4+b2 Downloading dependency 233 of 510: libdav1d7:amd64=1.4.0-1 Downloading dependency 234 of 510: python3-minimal:amd64=3.11.8-1 Downloading dependency 235 of 510: libopus0:amd64=1.4-1+b1 Downloading dependency 236 of 510: libscalapack-openmpi2.2:amd64=2.2.1-3+b1 Downloading dependency 237 of 510: adduser:amd64=3.137 Downloading dependency 238 of 510: libdbus-1-3:amd64=1.14.10-4+b1 Downloading dependency 239 of 510: python3-pkg-resources:amd64=68.1.2-2 Downloading dependency 240 of 510: libtrilinos-trilinosss-13.2:amd64=13.2.0-5+b1 Downloading dependency 241 of 510: libgprofng0:amd64=2.42-3 Downloading dependency 242 of 510: libxcb-keysyms1:amd64=0.4.0-1+b2 Downloading dependency 243 of 510: fontconfig:amd64=2.15.0-1.1 Downloading dependency 244 of 510: libtrilinos-galeri-13.2:amd64=13.2.0-5+b1 Downloading dependency 245 of 510: fonts-dejavu-mono:amd64=2.37-8 Downloading dependency 246 of 510: hdf5-helpers:amd64=1.10.10+repack-3.1 Downloading dependency 247 of 510: dwz:amd64=0.15-1+b1 Downloading dependency 248 of 510: libkrb5support0:amd64=1.20.1-6 Downloading dependency 249 of 510: libaudit1:amd64=1:3.1.2-2.1 Downloading dependency 250 of 510: librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b3 Downloading dependency 251 of 510: libegl1:amd64=1.7.0-1 Downloading dependency 252 of 510: libbinutils:amd64=2.42-3Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libbinutils amd64 2.42-3 [521 kB] Fetched 521 kB in 0s (1703 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvbbzh_i6/libbinutils_2.42-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 linux-libc-dev all 6.7.9-2 [2255 kB] Fetched 2255 kB in 0s (95.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7aw77tfj/linux-libc-dev_6.7.9-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 x11-common all 1:7.7+23 [252 kB] Fetched 252 kB in 0s (22.1 MB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+23_all.deb' to '/srv/rebuilderd/tmp/tmpu0bd42qn/x11-common_7.7+23_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-teuchos-13.2 amd64 13.2.0-5+b1 [1279 kB] Fetched 1279 kB in 0s (31.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj4fyd1dh/libtrilinos-teuchos-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Fetched 277 kB in 0s (27.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxp2_6mr/libsepol2_3.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfftw3-quad3 amd64 3.3.10-1+b1 [607 kB] Fetched 607 kB in 0s (6066 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptv4bua9s/libfftw3-quad3_3.3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1 [216 kB] Fetched 216 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp72v0b6pl/libglu1-mesa-dev_9.0.2-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (8202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9aynz8z3/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 python3-distutils all 3.12.2-3 [131 kB] Fetched 131 kB in 0s (4764 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps1b39caa/python3-distutils_3.12.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libnghttp2-14 amd64 1.59.0-1+b1 [74.1 kB] Fetched 74.1 kB in 0s (2915 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp49zkbqwb/libnghttp2-14_1.59.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 bsdutils amd64 1:2.39.3-10 [97.3 kB] Fetched 97.3 kB in 0s (9689 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.39.3-10_amd64.deb' to '/srv/rebuilderd/tmp/tmpv6b5apfm/bsdutils_2.39.3-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libumfpack6 amd64 1:7.6.1+dfsg-1 [267 kB] Fetched 267 kB in 0s (2652 kB/s) dpkg-name: info: moved 'libumfpack6_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp7ijnob0b/libumfpack6_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Fetched 375 kB in 0s (33.6 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpfe2az8tl/diffutils_3.10-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Fetched 32.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i3wuszg/libacl1_2.3.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Fetched 93.1 kB in 0s (8436 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q2og_6f/libedit2_3.1-20230828-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Fetched 54.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmposlvi0tm/libxft2_2.3.6-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 openmpi-bin amd64 4.1.6-7 [226 kB] Fetched 226 kB in 0s (3563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgjzicxiu/openmpi-bin_4.1.6-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Fetched 47.0 kB in 0s (4684 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzn6znzav/libseccomp2_2.5.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Fetched 27.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ln7rkn3/python3_3.11.8-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwayland-client0 amd64 1.22.0-2.1+b1 [25.7 kB] Fetched 25.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpizp_1cwu/libwayland-client0_1.22.0-2.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph1tw_rdg/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 dpkg-dev all 1.22.6 [1317 kB] Fetched 1317 kB in 0s (72.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptb9fyqsm/dpkg-dev_1.22.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libasound2t64 amd64 1.2.11-1 [369 kB] Fetched 369 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzz01mjb/libasound2t64_1.2.11-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3 [13.0 MB] Fetched 13.0 MB in 0s (46.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppayo655b/libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Fetched 27.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.66-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp4p34xpw0/libcap2_2.66-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 sysvinit-utils amd64 3.08-7 [32.2 kB] Fetched 32.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6h2u_vfn/sysvinit-utils_3.08-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libspqr4 amd64 1:7.6.1+dfsg-1 [140 kB] Fetched 140 kB in 0s (8067 kB/s) dpkg-name: info: moved 'libspqr4_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp33kytw76/libspqr4_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 qt5-qmake-bin amd64 5.15.10+dfsg-7.2+b1 [1045 kB] Fetched 1045 kB in 0s (23.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphzjipdp6/qt5-qmake-bin_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Fetched 20.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp2_o_vm9u/libxxf86vm1_1.1.4-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Fetched 59.4 kB in 0s (3402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcrbb4vrx/libxml-sax-perl_1.02+dfsg-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libmagickwand-6.q16-7t64 amd64 8:6.9.12.98+dfsg1-5.2 [309 kB] Fetched 309 kB in 0s (7251 kB/s) dpkg-name: info: moved 'libmagickwand-6.q16-7t64_8%3a6.9.12.98+dfsg1-5.2_amd64.deb' to '/srv/rebuilderd/tmp/tmpg68b35i3/libmagickwand-6.q16-7t64_6.9.12.98+dfsg1-5.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 g++ amd64 4:13.2.0-7 [1348 B] Fetched 1348 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a13.2.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpjh5ltxkq/g++_13.2.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdebconfclient0 amd64 0.271+b2 [10.2 kB] Fetched 10.2 kB in 0s (813 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn0m6gifg/libdebconfclient0_0.271+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Fetched 32.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpauo88y77/libjbig0_2.1-6.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcholmod5 amd64 1:7.6.1+dfsg-1 [623 kB] Fetched 623 kB in 0s (16.5 MB/s) dpkg-name: info: moved 'libcholmod5_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmphsmz2966/libcholmod5_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 patch amd64 2.7.6-7 [128 kB] Fetched 128 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgb250sbb/patch_2.7.6-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsqlite3-0 amd64 3.45.2-1 [895 kB] Fetched 895 kB in 0s (57.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgz0258us/libsqlite3-0_3.45.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Fetched 342 kB in 0s (29.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpynou7x6t/libtinfo6_6.4+20240113-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] Fetched 19.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiwlj91cw/libdrm-nouveau2_2.4.120-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 918 kB in 0s (60.0 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg-3.1_amd64.deb' to '/srv/rebuilderd/tmp/tmp7tmxznzc/zlib1g-dev_1.3.dfsg-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-18 [10.3 MB] Fetched 10.3 MB in 6s (1670 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7a3r79x_/cpp-13-x86-64-linux-gnu_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Fetched 15.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsr_9g9gg/libxml-namespacesupport-perl_1.12-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsz2 amd64 1.1.2-1 [7684 B] Fetched 7684 B in 0s (549 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_fcc7hmh/libsz2_1.1.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmunge2 amd64 0.5.15-3+b1 [20.0 kB] Fetched 20.0 kB in 0s (1380 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptgmi2iks/libmunge2_0.5.15-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Fetched 38.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu7ru4jna/libpipeline1_1.5.7-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libportaudio2 amd64 19.6.0-1.2+b2 [64.8 kB] Fetched 64.8 kB in 0s (4202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpko5fa1hh/libportaudio2_19.6.0-1.2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsharpyuv-dev amd64 1.3.2-0.4+b1 [111 kB] Fetched 111 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw4wlbnp8/libsharpyuv-dev_1.3.2-0.4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libibverbs1 amd64 50.0-2 [61.4 kB] Fetched 61.4 kB in 0s (2952 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp80ivrk4c/libibverbs1_50.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libvulkan-dev amd64 1.3.275.0-1 [1310 kB] Fetched 1310 kB in 0s (15.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zydcsvk/libvulkan-dev_1.3.275.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Fetched 115 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0tpoidhl/libxcb-render0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Fetched 136 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplox_uc95/mawk_1.3.4.20240123-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6 [135 kB] Fetched 135 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzllqbgtp/libgssapi-krb5-2_1.20.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp86ace_1u/libsharpyuv0_1.3.2-0.4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libasound2-data all 1.2.11-1 [20.9 kB] Fetched 20.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7mxe6b3w/libasound2-data_1.2.11-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libctf0 amd64 2.42-3 [87.0 kB] Fetched 87.0 kB in 0s (4092 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ku_wm01/libctf0_2.42-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Fetched 87.6 kB in 0s (8534 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg-3.1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdihkmn99/zlib1g_1.3.dfsg-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-xkb1 amd64 1.15-1 [129 kB] Fetched 129 kB in 0s (8267 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptor5j2mf/libxcb-xkb1_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Fetched 8620 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3jb9j_wf/dh-strip-nondeterminism_1.13.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgdbm-compat4t64 amd64 1.23-5.1 [48.5 kB] Fetched 48.5 kB in 0s (1456 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvuv_fsyy/libgdbm-compat4t64_1.23-5.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Fetched 9856 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptjy5f06h/libheif-plugin-dav1d_1.17.6-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libqt5svg5-dev amd64 5.15.10-2+b2 [13.2 kB] Fetched 13.2 kB in 0s (1272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf8v6vew_/libqt5svg5-dev_5.15.10-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwacom9 amd64 2.10.0-1+b1 [22.6 kB] Fetched 22.6 kB in 0s (1468 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpekjeyb1p/libwacom9_2.10.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Fetched 823 kB in 0s (55.8 MB/s) dpkg-name: info: moved 'automake_1%3a1.16.5-1.3_all.deb' to '/srv/rebuilderd/tmp/tmp9vpc65_9/automake_1.16.5-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcurl4t64 amd64 8.6.0-3.2 [430 kB] Fetched 430 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl89_z36e/libcurl4t64_8.6.0-3.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 qtbase5-dev amd64 5.15.10+dfsg-7.2+b1 [1122 kB] Fetched 1122 kB in 0s (25.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglcb6x_b/qtbase5-dev_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Fetched 22.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpoq0dtd6p/libxfixes3_6.0.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuss12aya/libxcb-xfixes0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblz4-1 amd64 1.9.4-1+b2 [61.6 kB] Fetched 61.6 kB in 0s (6111 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqt4b4aga/liblz4-1_1.9.4-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libnettle8t64 amd64 3.9.1-2.2 [296 kB] Fetched 296 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa74_4zmi/libnettle8t64_3.9.1-2.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Fetched 38.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc7vfrht2/libdrm2_2.4.120-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libaec-dev amd64 1.1.2-1 [20.9 kB] Fetched 20.9 kB in 0s (338 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0c8lb0q6/libaec-dev_1.1.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8obgae4t/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-18 [19.8 MB] Fetched 19.8 MB in 0s (114 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptk50ae04/gcc-13-x86-64-linux-gnu_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libraw23t64 amd64 0.21.2-2.1 [388 kB] Fetched 388 kB in 0s (36.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1mvxrhst/libraw23t64_0.21.2-2.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 tzdata all 2024a-1 [255 kB] Fetched 255 kB in 0s (25.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphhx42tps/tzdata_2024a-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libbz2-1.0 amd64 1.0.8-5+b2 [38.2 kB] Fetched 38.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsk88jgt8/libbz2-1.0_1.0.8-5+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 imagemagick-6-common all 8:6.9.12.98+dfsg1-5.2 [67.1 kB] Fetched 67.1 kB in 0s (4002 kB/s) dpkg-name: info: moved 'imagemagick-6-common_8%3a6.9.12.98+dfsg1-5.2_all.deb' to '/srv/rebuilderd/tmp/tmpbqc3qklc/imagemagick-6-common_6.9.12.98+dfsg1-5.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Fetched 187 kB in 0s (18.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpabx9hb_u/libde265-0_1.0.15-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Fetched 2214 kB in 0s (98.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpplk_bfc9/libharfbuzz0b_8.3.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Fetched 74.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnnphibd6/libgraphite2-3_1.3.14-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Fetched 18.0 kB in 0s (1472 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbsb80e5m/libhwloc-plugins_2.10.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Fetched 421 kB in 0s (31.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1hk0qzww/libunistring5_1.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5widgets5t64 amd64 5.15.10+dfsg-7.2+b1 [2385 kB] Fetched 2385 kB in 0s (39.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwvpbvf80/libqt5widgets5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (29.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpio5j58pn/sed_4.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 texinfo-lib amd64 7.1-3+b1 [224 kB] Fetched 224 kB in 0s (8058 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpig61vutl/texinfo-lib_7.1-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5printsupport5t64 amd64 5.15.10+dfsg-7.2+b1 [204 kB] Fetched 204 kB in 0s (9042 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe0f275xr/libqt5printsupport5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Fetched 397 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpntkgxf0d/libglpk40_5.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7 [1440 B] Fetched 1440 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a13.2.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpmzcr139x/gcc-x86-64-linux-gnu_13.2.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Fetched 35.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libsm6_2%3a1.2.3-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp6jg0s7an/libsm6_1.2.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gcc-14-base amd64 14-20240303-1 [42.8 kB] Fetched 42.8 kB in 0s (438 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprzmky2a4/gcc-14-base_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfftw3-mpi3 amd64 3.3.10-1+b1 [64.2 kB] Fetched 64.2 kB in 0s (3390 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqd4kpxa4/libfftw3-mpi3_3.3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 readline-common all 8.2-3.1 [69.2 kB] Fetched 69.2 kB in 0s (4324 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5xiwz8xr/readline-common_8.2-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 qtbase5-dev-tools amd64 5.15.10+dfsg-7.2+b1 [760 kB] Fetched 760 kB in 0s (19.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm0zyekvt/qtbase5-dev-tools_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libubsan1 amd64 14-20240303-1 [1071 kB] Fetched 1071 kB in 0s (32.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpopbj3f61/libubsan1_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgfortran-13-dev amd64 13.2.0-18 [847 kB] Fetched 847 kB in 0s (25.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpas9s7g5q/libgfortran-13-dev_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmpc3 amd64 1.3.1-1+b2 [52.1 kB] Fetched 52.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx6l0m020/libmpc3_1.3.1-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 imagemagick-6.q16 amd64 8:6.9.12.98+dfsg1-5.2 [290 kB] Fetched 290 kB in 0s (10.1 MB/s) dpkg-name: info: moved 'imagemagick-6.q16_8%3a6.9.12.98+dfsg1-5.2_amd64.deb' to '/srv/rebuilderd/tmp/tmpzcwv6q3d/imagemagick-6.q16_6.9.12.98+dfsg1-5.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libuuid1 amd64 2.39.3-10 [30.1 kB] Fetched 30.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1hiqveoh/libuuid1_2.39.3-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Fetched 40.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxcursor1_1%3a1.2.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpyfkk0xpj/libxcursor1_1.2.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-image0 amd64 0.4.0-2+b1 [22.2 kB] Fetched 22.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9_l0dev/libxcb-image0_0.4.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 octave-common all 8.4.0-1 [6368 kB] Fetched 6368 kB in 0s (42.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppc5guul1/octave-common_8.4.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libklu2 amd64 1:7.6.1+dfsg-1 [86.9 kB] Fetched 86.9 kB in 0s (6028 kB/s) dpkg-name: info: moved 'libklu2_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmplt7287xm/libklu2_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Fetched 559 kB in 0s (40.4 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpj8rl_1vr/libgmp10_6.3.0+dfsg-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Fetched 62.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0i6rc2gw/libdrm-intel1_2.4.120-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 python3.11 amd64 3.11.8-3 [597 kB] Fetched 597 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpokisgg5t/python3.11_3.11.8-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Fetched 308 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3z8xg3an/libwebp7_1.3.2-0.4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnzmb5xtz/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 bzip2 amd64 1.0.8-5+b2 [40.5 kB] Fetched 40.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpehkslri9/bzip2_1.0.8-5+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libc-bin amd64 2.37-15.1 [602 kB] Fetched 602 kB in 0s (39.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd4s063j7/libc-bin_2.37-15.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 binutils-x86-64-linux-gnu amd64 2.42-3 [2214 kB] Fetched 2214 kB in 0s (21.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8h684n5/binutils-x86-64-linux-gnu_2.42-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5test5t64 amd64 5.15.10+dfsg-7.2+b1 [148 kB] Fetched 148 kB in 1s (183 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbqe7rlpp/libqt5test5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcc1-0 amd64 14-20240303-1 [42.0 kB] Fetched 42.0 kB in 0s (91.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc4e3m0j3/libcc1-0_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgudev-1.0-0 amd64 238-3+b1 [14.6 kB] Fetched 14.6 kB in 0s (31.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpug7vqv07/libgudev-1.0-0_238-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Fetched 107 kB in 0s (9213 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuib2nd7p/libxcb-dri2-0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgfortran5 amd64 14-20240303-1 [836 kB] Fetched 836 kB in 2s (479 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphy4nx0sv/libgfortran5_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpetsc-real3.19 amd64 3.19.6+dfsg1-2 [6843 kB] Fetched 6843 kB in 3s (2212 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvpj1dy5g/libpetsc-real3.19_3.19.6+dfsg1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Fetched 161 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4mqhlli4/gettext-base_0.21-14+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Fetched 171 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe5jo2ama/liblerc4_4.0.0+ds-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhdf5-dev amd64 1.10.10+repack-3.1 [2640 kB] Fetched 2640 kB in 0s (44.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp716edn4z/libhdf5-dev_1.10.10+repack-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-3.1 [21.2 kB] Fetched 21.2 kB in 0s (1591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qfvw5p0/libhdf5-hl-cpp-100t64_1.10.10+repack-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Fetched 246 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpshr0rl_q/libpcre2-16-0_10.42-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Fetched 22.5 kB in 0s (2184 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-1_amd64.deb' to '/srv/rebuilderd/tmp/tmps83y6qi7/libattr1_2.5.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 tex-common all 6.18 [32.5 kB] Fetched 32.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsazbfaey/tex-common_6.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-1 [604 kB] Fetched 604 kB in 0s (8767 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplcn9u5s2/libsuperlu-dist8_8.2.1+dfsg1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libglib2.0-0t64 amd64 2.78.4-5 [1222 kB] Fetched 1222 kB in 0s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9s1ds8pd/libglib2.0-0t64_2.78.4-5_amd64.deb' Downloading dependency 253 of 510: linux-libc-dev:amd64=6.7.9-2 Downloading dependency 254 of 510: x11-common:amd64=1:7.7+23 Downloading dependency 255 of 510: libtrilinos-teuchos-13.2:amd64=13.2.0-5+b1 Downloading dependency 256 of 510: libsepol2:amd64=3.5-2 Downloading dependency 257 of 510: libfftw3-quad3:amd64=3.3.10-1+b1 Downloading dependency 258 of 510: libglu1-mesa-dev:amd64=9.0.2-1.1 Downloading dependency 259 of 510: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 260 of 510: python3-distutils:amd64=3.12.2-3 Downloading dependency 261 of 510: libnghttp2-14:amd64=1.59.0-1+b1 Downloading dependency 262 of 510: bsdutils:amd64=1:2.39.3-10 Downloading dependency 263 of 510: libumfpack6:amd64=1:7.6.1+dfsg-1 Downloading dependency 264 of 510: diffutils:amd64=1:3.10-1 Downloading dependency 265 of 510: libacl1:amd64=2.3.2-1 Downloading dependency 266 of 510: libedit2:amd64=3.1-20230828-1 Downloading dependency 267 of 510: libxft2:amd64=2.3.6-1+b1 Downloading dependency 268 of 510: openmpi-bin:amd64=4.1.6-7 Downloading dependency 269 of 510: libseccomp2:amd64=2.5.5-1 Downloading dependency 270 of 510: python3:amd64=3.11.8-1 Downloading dependency 271 of 510: libwayland-client0:amd64=1.22.0-2.1+b1 Downloading dependency 272 of 510: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 273 of 510: dpkg-dev:amd64=1.22.6 Downloading dependency 274 of 510: libasound2t64:amd64=1.2.11-1 Downloading dependency 275 of 510: libamd-comgr2:amd64=6.0+git20231212.4510c28+dfsg-3 Downloading dependency 276 of 510: libcap2:amd64=1:2.66-5 Downloading dependency 277 of 510: sysvinit-utils:amd64=3.08-7 Downloading dependency 278 of 510: libspqr4:amd64=1:7.6.1+dfsg-1 Downloading dependency 279 of 510: qt5-qmake-bin:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 280 of 510: libxxf86vm1:amd64=1:1.1.4-1+b2 Downloading dependency 281 of 510: libxml-sax-perl:amd64=1.02+dfsg-3 Downloading dependency 282 of 510: libmagickwand-6.q16-7t64:amd64=8:6.9.12.98+dfsg1-5.2 Downloading dependency 283 of 510: g++:amd64=4:13.2.0-7 Downloading dependency 284 of 510: libdebconfclient0:amd64=0.271+b2 Downloading dependency 285 of 510: libjbig0:amd64=2.1-6.1+b1 Downloading dependency 286 of 510: libcholmod5:amd64=1:7.6.1+dfsg-1 Downloading dependency 287 of 510: patch:amd64=2.7.6-7 Downloading dependency 288 of 510: libsqlite3-0:amd64=3.45.2-1 Downloading dependency 289 of 510: libtinfo6:amd64=6.4+20240113-1 Downloading dependency 290 of 510: libdrm-nouveau2:amd64=2.4.120-2 Downloading dependency 291 of 510: zlib1g-dev:amd64=1:1.3.dfsg-3.1 Downloading dependency 292 of 510: cpp-13-x86-64-linux-gnu:amd64=13.2.0-18 Downloading dependency 293 of 510: libxml-namespacesupport-perl:amd64=1.12-2 Downloading dependency 294 of 510: libsz2:amd64=1.1.2-1 Downloading dependency 295 of 510: libmunge2:amd64=0.5.15-3+b1 Downloading dependency 296 of 510: libpipeline1:amd64=1.5.7-1+b2 Downloading dependency 297 of 510: libportaudio2:amd64=19.6.0-1.2+b2 Downloading dependency 298 of 510: libsharpyuv-dev:amd64=1.3.2-0.4+b1 Downloading dependency 299 of 510: libibverbs1:amd64=50.0-2 Downloading dependency 300 of 510: libvulkan-dev:amd64=1.3.275.0-1 Downloading dependency 301 of 510: libxcb-render0:amd64=1.15-1 Downloading dependency 302 of 510: mawk:amd64=1.3.4.20240123-1 Downloading dependency 303 of 510: libgssapi-krb5-2:amd64=1.20.1-6 Downloading dependency 304 of 510: libsharpyuv0:amd64=1.3.2-0.4+b1 Downloading dependency 305 of 510: libasound2-data:amd64=1.2.11-1 Downloading dependency 306 of 510: libctf0:amd64=2.42-3 Downloading dependency 307 of 510: zlib1g:amd64=1:1.3.dfsg-3.1 Downloading dependency 308 of 510: libxcb-xkb1:amd64=1.15-1 Downloading dependency 309 of 510: dh-strip-nondeterminism:amd64=1.13.1-1 Downloading dependency 310 of 510: libgdbm-compat4t64:amd64=1.23-5.1 Downloading dependency 311 of 510: libheif-plugin-dav1d:amd64=1.17.6-1+b2 Downloading dependency 312 of 510: libqt5svg5-dev:amd64=5.15.10-2+b2 Downloading dependency 313 of 510: libwacom9:amd64=2.10.0-1+b1 Downloading dependency 314 of 510: automake:amd64=1:1.16.5-1.3 Downloading dependency 315 of 510: libcurl4t64:amd64=8.6.0-3.2 Downloading dependency 316 of 510: qtbase5-dev:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 317 of 510: libxfixes3:amd64=1:6.0.0-2 Downloading dependency 318 of 510: libxcb-xfixes0:amd64=1.15-1 Downloading dependency 319 of 510: liblz4-1:amd64=1.9.4-1+b2 Downloading dependency 320 of 510: libnettle8t64:amd64=3.9.1-2.2 Downloading dependency 321 of 510: libdrm2:amd64=2.4.120-2 Downloading dependency 322 of 510: libaec-dev:amd64=1.1.2-1 Downloading dependency 323 of 510: autotools-dev:amd64=20220109.1 Downloading dependency 324 of 510: gcc-13-x86-64-linux-gnu:amd64=13.2.0-18 Downloading dependency 325 of 510: libraw23t64:amd64=0.21.2-2.1 Downloading dependency 326 of 510: tzdata:amd64=2024a-1 Downloading dependency 327 of 510: libbz2-1.0:amd64=1.0.8-5+b2 Downloading dependency 328 of 510: imagemagick-6-common:amd64=8:6.9.12.98+dfsg1-5.2 Downloading dependency 329 of 510: libde265-0:amd64=1.0.15-1+b1 Downloading dependency 330 of 510: libharfbuzz0b:amd64=8.3.0-2+b1 Downloading dependency 331 of 510: libgraphite2-3:amd64=1.3.14-2 Downloading dependency 332 of 510: libhwloc-plugins:amd64=2.10.0-1+b1 Downloading dependency 333 of 510: libunistring5:amd64=1.1-2 Downloading dependency 334 of 510: libqt5widgets5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 335 of 510: sed:amd64=4.9-2 Downloading dependency 336 of 510: texinfo-lib:amd64=7.1-3+b1 Downloading dependency 337 of 510: libqt5printsupport5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 338 of 510: libglpk40:amd64=5.0-1+b1 Downloading dependency 339 of 510: gcc-x86-64-linux-gnu:amd64=4:13.2.0-7 Downloading dependency 340 of 510: libsm6:amd64=2:1.2.3-1 Downloading dependency 341 of 510: gcc-14-base:amd64=14-20240303-1 Downloading dependency 342 of 510: libfftw3-mpi3:amd64=3.3.10-1+b1 Downloading dependency 343 of 510: readline-common:amd64=8.2-3.1 Downloading dependency 344 of 510: qtbase5-dev-tools:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 345 of 510: libubsan1:amd64=14-20240303-1 Downloading dependency 346 of 510: libgfortran-13-dev:amd64=13.2.0-18 Downloading dependency 347 of 510: libmpc3:amd64=1.3.1-1+b2 Downloading dependency 348 of 510: imagemagick-6.q16:amd64=8:6.9.12.98+dfsg1-5.2 Downloading dependency 349 of 510: libuuid1:amd64=2.39.3-10 Downloading dependency 350 of 510: libxcursor1:amd64=1:1.2.1-1 Downloading dependency 351 of 510: libxcb-image0:amd64=0.4.0-2+b1 Downloading dependency 352 of 510: octave-common:amd64=8.4.0-1 Downloading dependency 353 of 510: libklu2:amd64=1:7.6.1+dfsg-1 Downloading dependency 354 of 510: libgmp10:amd64=2:6.3.0+dfsg-2+b1 Downloading dependency 355 of 510: libdrm-intel1:amd64=2.4.120-2 Downloading dependency 356 of 510: python3.11:amd64=3.11.8-3 Downloading dependency 357 of 510: libwebp7:amd64=1.3.2-0.4+b1 Downloading dependency 358 of 510: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 359 of 510: bzip2:amd64=1.0.8-5+b2 Downloading dependency 360 of 510: libc-bin:amd64=2.37-15.1 Downloading dependency 361 of 510: binutils-x86-64-linux-gnu:amd64=2.42-3 Downloading dependency 362 of 510: libqt5test5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 363 of 510: libcc1-0:amd64=14-20240303-1 Downloading dependency 364 of 510: libgudev-1.0-0:amd64=238-3+b1 Downloading dependency 365 of 510: libxcb-dri2-0:amd64=1.15-1 Downloading dependency 366 of 510: libgfortran5:amd64=14-20240303-1 Downloading dependency 367 of 510: libpetsc-real3.19:amd64=3.19.6+dfsg1-2 Downloading dependency 368 of 510: gettext-base:amd64=0.21-14+b1 Downloading dependency 369 of 510: liblerc4:amd64=4.0.0+ds-4+b1 Downloading dependency 370 of 510: libhdf5-dev:amd64=1.10.10+repack-3.1 Downloading dependency 371 of 510: libhdf5-hl-cpp-100t64:amd64=1.10.10+repack-3.1 Downloading dependency 372 of 510: libpcre2-16-0:amd64=10.42-4+b1 Downloading dependency 373 of 510: libattr1:amd64=1:2.5.2-1 Downloading dependency 374 of 510: tex-common:amd64=6.18 Downloading dependency 375 of 510: libsuperlu-dist8:amd64=8.2.1+dfsg1-1 Downloading dependency 376 of 510: libglib2.0-0t64:amd64=2.78.4-5 Downloading dependency 377 of 510: libudev1:amd64=255.4-1+b1Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libudev1 amd64 255.4-1+b1 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1fxyshv7/libudev1_255.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-ml-13.2 amd64 13.2.0-5+b1 [1009 kB] Fetched 1009 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpno7lm8u7/libtrilinos-ml-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libssl3t64 amd64 3.1.5-1.1 [2058 kB] Fetched 2058 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9srwomh9/libssl3t64_3.1.5-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 python3-lib2to3 all 3.12.2-3 [77.6 kB] Fetched 77.6 kB in 0s (3014 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbybtubw/python3-lib2to3_3.12.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfltk1.3t64 amd64 1.3.8-6.1 [553 kB] Fetched 553 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmz1pa8ju/libfltk1.3t64_1.3.8-6.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgsl-dev amd64 2.7.1+dfsg-6+b1 [1146 kB] Fetched 1146 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0veyo8zm/libgsl-dev_2.7.1+dfsg-6+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Fetched 314 kB in 0s (28.8 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpibw0ywfe/libmagic-mgc_5.45-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Fetched 26.2 kB in 0s (2223 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpablp7fpr/pkgconf_1.8.1-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-aztecoo-13.2 amd64 13.2.0-5+b1 [211 kB] Fetched 211 kB in 0s (7263 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp84tpbmar/libtrilinos-aztecoo-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Fetched 56.8 kB in 0s (1770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp860ao8g6/libpsl5t64_0.21.2-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Fetched 43.3 kB in 0s (1923 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppq2u8sx3/libavahi-common3_0.8-13+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 autoconf all 2.71-3 [332 kB] Fetched 332 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr7rq26b4/autoconf_2.71-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 cpp-13 amd64 13.2.0-18 [1280 B] Fetched 1280 B in 0s (14.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6boh70eu/cpp-13_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Fetched 68.8 kB in 0s (2447 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yesihb7/libuchardet0_0.0.8-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 ibverbs-providers amd64 50.0-2 [342 kB] Fetched 342 kB in 0s (5990 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptjutrm13/ibverbs-providers_50.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libllvm17t64 amd64 1:17.0.6-9 [23.7 MB] Fetched 23.7 MB in 0s (66.4 MB/s) dpkg-name: info: moved 'libllvm17t64_1%3a17.0.6-9_amd64.deb' to '/srv/rebuilderd/tmp/tmpjzhobcrc/libllvm17t64_17.0.6-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-5+b1 [697 kB] Fetched 697 kB in 0s (5689 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpanlmj6de/libdb5.3t64_5.3.28+dfsg2-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Fetched 101 kB in 0s (4811 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy0q2ywop/libtext-unidecode-perl_1.30-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libisl23 amd64 0.26-3+b2 [652 kB] Fetched 652 kB in 0s (52.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9y9zxpo7/libisl23_0.26-3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libncurses6 amd64 6.4+20240113-1 [104 kB] Fetched 104 kB in 0s (5585 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbd5ouh72/libncurses6_6.4+20240113-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libltdl7 amd64 2.4.7-7 [393 kB] Fetched 393 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjiwvrmvs/libltdl7_2.4.7-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcamd3 amd64 1:7.6.1+dfsg-1 [35.7 kB] Fetched 35.7 kB in 0s (2133 kB/s) dpkg-name: info: moved 'libcamd3_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpd6c1k35n/libcamd3_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1 [1242 kB] Fetched 1242 kB in 0s (4532 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpevu6q2_m/libhdf5-103-1t64_1.10.10+repack-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libjxl0.7 amd64 0.7.0-10.2+b2 [1067 kB] Fetched 1067 kB in 0s (69.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxn321b9/libjxl0.7_0.7.0-10.2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gfortran amd64 4:13.2.0-7 [1440 B] Fetched 1440 B in 0s (86.8 kB/s) dpkg-name: info: moved 'gfortran_4%3a13.2.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpxm5_0_rj/gfortran_13.2.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libvulkan1 amd64 1.3.275.0-1 [124 kB] Fetched 124 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu9dzl6kz/libvulkan1_1.3.275.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsuitesparseconfig7 amd64 1:7.6.1+dfsg-1 [22.2 kB] Fetched 22.2 kB in 0s (1577 kB/s) dpkg-name: info: moved 'libsuitesparseconfig7_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpqx3ldvc0/libsuitesparseconfig7_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 make amd64 4.3-4.1 [396 kB] Fetched 396 kB in 0s (30.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqh4ysxt5/make_4.3-4.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Fetched 21.4 kB in 0s (2129 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp94k8soj7/libdrm-amdgpu1_2.4.120-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (1271 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8s09p0qn/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 debconf all 1.5.86 [119 kB] Fetched 119 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2qevnhup/debconf_1.5.86_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmount1 amd64 2.39.3-10 [191 kB] Fetched 191 kB in 0s (17.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8hq1gh1/libmount1_2.39.3-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-3.1 [89.0 kB] Fetched 89.0 kB in 0s (4574 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2qggnmw/libhdf5-fortran-102t64_1.10.10+repack-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7 [4724 B] Fetched 4724 B in 0s (466 kB/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a13.2.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpbdb7tplr/cpp-x86-64-linux-gnu_13.2.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7 [1280 B] Fetched 1280 B in 0s (81.0 kB/s) dpkg-name: info: moved 'gfortran-x86-64-linux-gnu_4%3a13.2.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpitlimlca/gfortran-x86-64-linux-gnu_13.2.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Fetched 103 kB in 0s (6800 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsmnlblq_/libexpat1_2.6.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Fetched 135 kB in 0s (12.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrnfc76d/libncursesw6_6.4+20240113-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmumps-5.6 amd64 5.6.2-2+b1 [1896 kB] Fetched 1896 kB in 2s (901 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlcshf0b/libmumps-5.6_5.6.2-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libatomic1 amd64 14-20240303-1 [9208 B] Fetched 9208 B in 0s (379 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptl83sbna/libatomic1_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Fetched 35.8 kB in 0s (3321 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsiaq_w94/libmd0_1.1.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtiff-dev amd64 4.5.1+git230720-4 [462 kB] Fetched 462 kB in 0s (36.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_yayof4d/libtiff-dev_4.5.1+git230720-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Fetched 105 kB in 0s (5307 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_oqw34ht/libxcb-present0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcbor0.10 amd64 0.10.2-1.2 [28.2 kB] Fetched 28.2 kB in 0s (1812 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8gmu541u/libcbor0.10_0.10.2-1.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-8.1+b1 [54.1 kB] Fetched 54.1 kB in 0s (3320 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptgfx4l9i/libevent-pthreads-2.1-7t64_2.1.12-stable-8.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqrupdate1 amd64 1.1.2-4+b1 [38.4 kB] Fetched 38.4 kB in 0s (1714 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeahf28l6/libqrupdate1_1.1.2-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-3.1 [40.3 kB] Fetched 40.3 kB in 0s (2542 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_to44itc/libhdf5-hl-fortran-100t64_1.10.10+repack-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Fetched 120 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpui5ml1m0/libwebpmux3_1.3.2-0.4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libgbm1 amd64 24.0.3-1 [40.7 kB] Fetched 40.7 kB in 0s (2086 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpda5hvm2v/libgbm1_24.0.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmpfr6 amd64 4.2.1-1+b1 [714 kB] Fetched 714 kB in 0s (33.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62edvxah/libmpfr6_4.2.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libjpeg-dev amd64 1:2.1.5-2+b2 [72.1 kB] Fetched 72.1 kB in 0s (5696 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.1.5-2+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpxr849s5v/libjpeg-dev_2.1.5-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Fetched 840 kB in 0s (52.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8epppm3t/fonts-dejavu-core_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdebhelper-perl all 13.14.1 [85.6 kB] Fetched 85.6 kB in 0s (4170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0k2f6m1c/libdebhelper-perl_13.14.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 dh-python all 6.20240310 [106 kB] Fetched 106 kB in 0s (5695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1i3i4xx0/dh-python_6.20240310_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Fetched 627 kB in 0s (20.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1qzwsqfn/libfabric1_1.17.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b2 [438 kB] Fetched 438 kB in 0s (31.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq4hejdcs/libfreetype6_2.13.2+dfsg-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblzma5 amd64 5.6.0-0.2 [250 kB] Fetched 250 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvxrqu8q9/liblzma5_5.6.0-0.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsensors-config all 1:3.6.0-9 [14.6 kB] Fetched 14.6 kB in 0s (1180 kB/s) dpkg-name: info: moved 'libsensors-config_1%3a3.6.0-9_all.deb' to '/srv/rebuilderd/tmp/tmpnd834yg5/libsensors-config_3.6.0-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 python3.11-minimal amd64 3.11.8-3 [1879 kB] Fetched 1879 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpteb4uo92/python3.11-minimal_3.11.8-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libogg0 amd64 1.3.5-3 [23.4 kB] Fetched 23.4 kB in 0s (1249 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo_rna1l3/libogg0_1.3.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpng16-16t64 amd64 1.6.43-3 [278 kB] Fetched 278 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphr1cm_wo/libpng16-16t64_1.6.43-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Fetched 11.4 kB in 0s (525 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn3m_5mtx/hicolor-icon-theme_0.17-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Fetched 48.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi8m7kuyo/libtasn1-6_4.19.0-3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 qt5-qmake amd64 5.15.10+dfsg-7.2+b1 [223 kB] Fetched 223 kB in 0s (8176 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbu59jpam/qt5-qmake_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libjbig-dev amd64 2.1-6.1+b1 [31.4 kB] Fetched 31.4 kB in 0s (2660 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbm9wwd0i/libjbig-dev_2.1-6.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcolamd3 amd64 1:7.6.1+dfsg-1 [31.1 kB] Fetched 31.1 kB in 0s (1262 kB/s) dpkg-name: info: moved 'libcolamd3_1%3a7.6.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp2g77xz6o/libcolamd3_7.6.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwebp-dev amd64 1.3.2-0.4+b1 [466 kB] Fetched 466 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpphin6g9i/libwebp-dev_1.3.2-0.4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libselinux1 amd64 3.5-2 [74.8 kB] Fetched 74.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_hsig3pg/libselinux1_3.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhwasan0 amd64 14-20240303-1 [1485 kB] Fetched 1485 kB in 0s (26.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpua_rb_e7/libhwasan0_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpmix2t64 amd64 5.0.1-4.1 [645 kB] Fetched 645 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdbdfqd2/libpmix2t64_5.0.1-4.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Fetched 9908 B in 0s (944 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp12gq82im/libsemanage-common_3.5-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Fetched 89.8 kB in 0s (8368 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.36-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpoj09p8kr/libcrypt1_4.4.36-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsamplerate0 amd64 0.2.2-4 [952 kB] Fetched 952 kB in 0s (62.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6cdatrk6/libsamplerate0_0.2.2-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libitm1 amd64 14-20240303-1 [25.9 kB] Fetched 25.9 kB in 0s (434 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfuf9yra3/libitm1_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsundials-ida6 amd64 6.4.1+dfsg1-3+b3 [146 kB] Fetched 146 kB in 0s (4932 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2j1x4h2t/libsundials-ida6_6.4.1+dfsg1-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libzstd-dev amd64 1.5.5+dfsg2-2 [358 kB] Fetched 358 kB in 0s (30.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2p3rpbd9/libzstd-dev_1.5.5+dfsg2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 perl-base amd64 5.38.2-3.2 [1643 kB] Fetched 1643 kB in 0s (61.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg9pr11ii/perl-base_5.38.2-3.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5network5t64 amd64 5.15.10+dfsg-7.2+b1 [677 kB] Fetched 677 kB in 0s (2698 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpboeaym4f/libqt5network5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-icccm4 amd64 0.4.1-1.1+b1 [26.8 kB] Fetched 26.8 kB in 0s (2311 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp06gkz39m/libxcb-icccm4_0.4.1-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqscintilla2-qt5-l10n all 2.14.1+dfsg-1 [105 kB] Fetched 105 kB in 0s (1389 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzo9abtix/libqscintilla2-qt5-l10n_2.14.1+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcap-ng0 amd64 0.8.4-2 [16.9 kB] Fetched 16.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzlalvytt/libcap-ng0_0.8.4-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Fetched 41.4 kB in 0s (229 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7f5jig6g/libdeflate0_1.19-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpam-modules amd64 1.5.3-6 [260 kB] Fetched 260 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsymr8eqp/libpam-modules_1.5.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] Fetched 247 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp77udzgie/libcups2t64_2.4.7-1.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Fetched 26.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpomkqsmhe/qtchooser_66-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 debhelper all 13.14.1 [890 kB] Fetched 890 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qh2ub2b/debhelper_13.14.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhogweed6t64 amd64 3.9.1-2.2 [328 kB] Fetched 328 kB in 0s (27.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsxf4p1pw/libhogweed6t64_3.9.1-2.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxext-dev amd64 2:1.3.4-1+b1 [107 kB] Fetched 107 kB in 0s (10.4 MB/s) dpkg-name: info: moved 'libxext-dev_2%3a1.3.4-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp7euxlbmx/libxext-dev_1.3.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Fetched 9395 kB in 0s (122 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa1uchvtw/libicu72_72.1-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Fetched 105 kB in 0s (8151 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpox1vdt0f/libmagic1t64_5.45-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfftw3-double3 amd64 3.3.10-1+b1 [779 kB] Fetched 779 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuduf1lq4/libfftw3-double3_3.3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libfftw3-long3 amd64 3.3.10-1+b1 [343 kB] Fetched 343 kB in 0s (716 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpym3b273x/libfftw3-long3_3.3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libglx0 amd64 1.7.0-1 [34.7 kB] Fetched 34.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw6poqv1v/libglx0_1.7.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libwacom-common all 2.10.0-1 [62.4 kB] Fetched 62.4 kB in 0s (394 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7z0z_pr0/libwacom-common_2.10.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libquadmath0 amd64 14-20240303-1 [147 kB] Fetched 147 kB in 0s (3184 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgu1saltb/libquadmath0_14-20240303-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Fetched 22.1 kB in 0s (0 B/s) dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.11-1.1_all.deb' to '/srv/rebuilderd/tmp/tmpyfg3ueds/xorg-sgml-doctools_1.11-1.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgraphicsmagick-q16-3t64 amd64 1.4+really1.3.42-1.1+b1 [1203 kB] Fetched 1203 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg2d6q48/libgraphicsmagick-q16-3t64_1.4+really1.3.42-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libqt5help5 amd64 5.15.10-6+b1 [150 kB] Fetched 150 kB in 0s (3075 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6n7g64sg/libqt5help5_5.15.10-6+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Fetched 55.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbvc_5p1s/ucf_3.0043+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libevdev2 amd64 1.13.1+dfsg-1 [32.0 kB] Fetched 32.0 kB in 0s (206 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpip3ku8ra/libevdev2_1.13.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 mpi-default-bin amd64 1.15 [2408 B] Fetched 2408 B in 0s (53.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo0a5pnff/mpi-default-bin_1.15_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 build-essential amd64 12.10 [4516 B] Fetched 4516 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcktzg7uh/build-essential_12.10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxnvctrl0 amd64 525.147.05-1 [13.5 kB] Fetched 13.5 kB in 0s (132 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdd9hhb8p/libxnvctrl0_525.147.05-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240324T085147Z sid/main amd64 libmagickcore-6.q16-7t64 amd64 8:6.9.12.98+dfsg1-5.2 [1698 kB] Fetched 1698 kB in 0s (25.7 MB/s) dpkg-name: info: moved 'libmagickcore-6.q16-7t64_8%3a6.9.12.98+dfsg1-5.2_amd64.deb' to '/srv/rebuilderd/tmp/tmpyxgsafcj/libmagickcore-6.q16-7t64_6.9.12.98+dfsg1-5.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Fetched 5344 B in 0s (506 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpepoifzfh/libpthread-stubs0-dev_0.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libsndfile1 amd64 1.2.2-1+b1 [197 kB] Fetched 197 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9rqc24at/libsndfile1_1.2.2-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdouble-conversion3 amd64 3.3.0-1+b1 [41.0 kB] Fetched 41.0 kB in 0s (428 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz45wku5a/libdouble-conversion3_3.3.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libcombblas2.0.0 amd64 2.0.0-3+b1 [284 kB] Fetched 284 kB in 0s (935 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjm0506ay/libcombblas2.0.0_2.0.0-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpam0g amd64 1.5.3-6 [67.7 kB] Fetched 67.7 kB in 0s (5825 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9ub8bya/libpam0g_1.5.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 bsdextrautils amd64 2.39.3-10 [89.6 kB] Fetched 89.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5cmqlvi/bsdextrautils_2.39.3-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gzip amd64 1.12-1 [140 kB] Fetched 140 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk_euqu0_/gzip_1.12-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-8.1+b1 [132 kB] Fetched 132 kB in 0s (3508 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpev07pua3/libevent-core-2.1-7t64_2.1.12-stable-8.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-18 [10.7 MB] Fetched 10.7 MB in 2s (4938 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9u9c2qrh/gfortran-13-x86-64-linux-gnu_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libqt5sql5t64 amd64 5.15.10+dfsg-7.2+b1 [123 kB] Fetched 123 kB in 0s (4101 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsj_tirn0/libqt5sql5t64_5.15.10+dfsg-7.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Fetched 122 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuq49b2vc/libxcb-glx0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 matlab-support-dev all 0.1 [5164 B] Fetched 5164 B in 0s (114 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1piqpl2_/matlab-support-dev_0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Fetched 77.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp14clc_az/libgpg-error0_1.47-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-xinput0 amd64 1.15-1 [130 kB] Fetched 130 kB in 0s (5747 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdb8ebtwe/libxcb-xinput0_1.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1 [63.2 kB] Fetched 63.2 kB in 0s (1327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpngk12ki3/libhdf5-hl-100t64_1.10.10+repack-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Fetched 180 kB in 0s (848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8lh9pz6s/libpsm2-2_11.2.185-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Fetched 23.2 kB in 0s (2274 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx0fbjowk/libxcb-util1_0.4.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libmp3lame0 amd64 3.100-6+b2 [361 kB] Fetched 361 kB in 0s (31.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglm35qzc/libmp3lame0_3.100-6+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libegl-dev amd64 1.7.0-1 [19.2 kB] Fetched 19.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps53vqemy/libegl-dev_1.7.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libx11-xcb1 amd64 2:1.8.7-1 [232 kB] Fetched 232 kB in 0s (22.8 MB/s) dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.7-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp5s71y0da/libx11-xcb1_1.8.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Fetched 60.7 kB in 0s (161 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3o7no7d1/libhsakmt1_5.7.0-1_amd64.deb' Downloading dependency 378 of 510: libtrilinos-ml-13.2:amd64=13.2.0-5+b1 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libcombblas2.0.0:amd64=2.0.0-3+b1 Downloading dependency 484 of 510: libpam0g:amd64=1.5.3-6 Downloading dependency 485 of 510: bsdextrautils:amd64=2.39.3-10 Downloading dependency 486 of 510: gzip:amd64=1.12-1 Downloading dependency 487 of 510: libevent-core-2.1-7t64:amd64=2.1.12-stable-8.1+b1 Downloading dependency 488 of 510: gfortran-13-x86-64-linux-gnu:amd64=13.2.0-18 Downloading dependency 489 of 510: libqt5sql5t64:amd64=5.15.10+dfsg-7.2+b1 Downloading dependency 490 of 510: libxcb-glx0:amd64=1.15-1 Downloading dependency 491 of 510: matlab-support-dev:amd64=0.1 Downloading dependency 492 of 510: libgpg-error0:amd64=1.47-3 Downloading dependency 493 of 510: libxcb-xinput0:amd64=1.15-1 Downloading dependency 494 of 510: libhdf5-hl-100t64:amd64=1.10.10+repack-3.1 Downloading dependency 495 of 510: libpsm2-2:amd64=11.2.185-2 Downloading dependency 496 of 510: libxcb-util1:amd64=0.4.0-1+b1 Downloading dependency 497 of 510: libmp3lame0:amd64=3.100-6+b2 Downloading dependency 498 of 510: libegl-dev:amd64=1.7.0-1 Downloading dependency 499 of 510: libx11-xcb1:amd64=2:1.8.7-1 Downloading dependency 500 of 510: libhsakmt1:amd64=5.7.0-1 Downloading dependency 501 of 510: shared-mime-info:amd64=2.4-3Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 shared-mime-info amd64 2.4-3 [758 kB] Fetched 758 kB in 0s (38.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvu8l59lu/shared-mime-info_2.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Fetched 22.2 kB in 0s (2001 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpir7bcq2c/libdrm-radeon1_2.4.120-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libtrilinos-ifpack-13.2 amd64 13.2.0-5+b1 [491 kB] Fetched 491 kB in 0s (1156 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi9r5_cj7/libtrilinos-ifpack-13.2_13.2.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libgcc-13-dev amd64 13.2.0-18 [2544 kB] Fetched 2544 kB in 0s (6927 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprvjkjnt7/libgcc-13-dev_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 liblzma-dev amd64 5.6.0-0.2 [270 kB] Fetched 270 kB in 0s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpztxg1mod/liblzma-dev_5.6.0-0.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 media-types all 10.1.0 [26.9 kB] Fetched 26.9 kB in 0s (2228 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3fti53wm/media-types_10.1.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 gfortran-13 amd64 13.2.0-18 [10.6 kB] Fetched 10.6 kB in 0s (531 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp99homx5z/gfortran-13_13.2.0-18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Fetched 92.1 kB in 0s (9009 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4oavvsn6/dash_0.5.12-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libkrb5-3 amd64 1.20.1-6 [333 kB] Fetched 333 kB in 0s (752 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8degy9bd/libkrb5-3_1.20.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240314T094714Z sid/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Fetched 117 kB in 0s (411 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyuhk84fk/libxcb-randr0_1.15-1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpoiao21k2/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR 127.0.0.1 - - [15/Jun/2025 03:22:02] code 404, message File not found 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39107 ./ InRelease 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:39107 ./ Release [462 B] 127.0.0.1 - - [15/Jun/2025 03:22:02] code 404, message File not found 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39107 ./ Release.gpg 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:39107 ./ Packages [646 kB] Fetched 646 kB in 0s (28.0 MB/s) Reading package lists... usr-is-merged found -- running merged-usr setup hook dpkg-deb: building package 'usr-is-merged' in '/srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR/tmp/tmp.s59wgBaFxI/usr-is-merged.deb'. Selecting previously unselected package usr-is-merged. (Reading database ... 0 files and directories currently installed.) Preparing to unpack .../usr-is-merged.deb ... Unpacking usr-is-merged (1) ... touch: cannot touch '/run/needrestart/unpacked': Permission denied Setting up usr-is-merged (1) ... I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./gcc-14-base_14-20240303-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./libc6_2.37-15.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./libgcc-s1_14-20240303-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./mawk_1.3.4.20240123-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./base-files_13_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./libtinfo6_6.4%2b20240113-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./debianutils_5.17_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./bash_5.2.21-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./libcap2_2.66-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:02] "GET /./libgpg-error0_1.47-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - 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I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR 127.0.0.1 - - [15/Jun/2025 03:22:04] code 404, message File not found 127.0.0.1 - - [15/Jun/2025 03:22:04] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39107 ./ InRelease 127.0.0.1 - - [15/Jun/2025 03:22:04] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:39107 ./ Release 127.0.0.1 - - [15/Jun/2025 03:22:04] code 404, message File not found 127.0.0.1 - - [15/Jun/2025 03:22:04] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39107 ./ Release.gpg Reading package lists... usr-is-merged found -- running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR dummy usr-is-merged package installed -- running merged-usr essential hook Reading package lists... Building dependency tree... 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127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libwebpdecoder3_1.3.2-0.4%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libdeflate-dev_1.19-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libsharpyuv-dev_1.3.2-0.4%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libqt5svg5-dev_5.15.10-2%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libgsl-dev_2.7.1%2bdfsg-6%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libjbig-dev_2.1-6.1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./liblzma-dev_5.6.0-0.2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libzstd-dev_1.5.5%2bdfsg2-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libwebp-dev_1.3.2-0.4%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./libtiff-dev_4.5.1%2bgit230720-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./dh-python_6.20240310_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./matlab-support-dev_0.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2025 03:22:16] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpoiao21k2/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR Reading package lists... Building dependency tree... Reading state information... libtiffxx6 is already the newest version (4.5.1+git230720-4). libtiffxx6 set to manually installed. libqt5core5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5core5t64 set to manually installed. libblas-dev is already the newest version (3.12.0-3). libblas-dev set to manually installed. coreutils is already the newest version (9.4-3+b2). libdpkg-perl is already the newest version (1.22.6). libdpkg-perl set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b1). libxext6 set to manually installed. libbtf2 is already the newest version (1:7.6.1+dfsg-1). libbtf2 set to manually installed. libgcc-s1 is already the newest version (14-20240303-1). octave-dev is already the newest version (8.4.0-1+b2). octave-dev set to manually installed. libfftw3-single3 is already the newest version (3.3.10-1+b1). libfftw3-single3 set to manually installed. libxkbcommon-x11-0 is already the newest version (1.6.0-1). libxkbcommon-x11-0 set to manually installed. libjpeg62-turbo-dev is already the newest version (1:2.1.5-2+b2). libjpeg62-turbo-dev set to manually installed. libmetis5 is already the newest version (5.1.0.dfsg-7+b1). libmetis5 set to manually installed. libasan8 is already the newest version (14-20240303-1). libasan8 set to manually installed. libcurl4-openssl-dev is already the newest version (8.6.0-3.2). libcurl4-openssl-dev set to manually installed. libkeyutils1 is already the newest version (1.6.3-3). libkeyutils1 set to manually installed. libgl-dev is already the newest version (1.7.0-1). libgl-dev set to manually installed. libgcrypt20 is already the newest version (1.10.3-2). netbase is already the newest version (6.4). netbase set to manually installed. libegl-mesa0 is already the newest version (24.0.3-1). libegl-mesa0 set to manually installed. libptscotch-7.0 is already the newest version (7.0.4-1+b1). libptscotch-7.0 set to manually installed. man-db is already the newest version (2.12.0-3). man-db set to manually installed. libgslcblas0 is already the newest version (2.7.1+dfsg-6+b1). libgslcblas0 set to manually installed. libz3-4 is already the newest version (4.8.12-3.1+b2). libz3-4 set to manually installed. libtool is already the newest version (2.4.7-7). libtool set to manually installed. liblcms2-2 is already the newest version (2.14-2+b1). liblcms2-2 set to manually installed. login is already the newest version (1:4.13+dfsg1-4). libqscintilla2-qt5-15 is already the newest version (2.14.1+dfsg-1+b2). libqscintilla2-qt5-15 set to manually installed. xkb-data is already the newest version (2.41-2). xkb-data set to manually installed. libsundials-nvecparallel-petsc6 is already the newest version (6.4.1+dfsg1-3+b3). libsundials-nvecparallel-petsc6 set to manually installed. libsub-override-perl is already the newest version (0.10-1). libsub-override-perl set to manually installed. libhsa-runtime64-1 is already the newest version (5.7.1-1). libhsa-runtime64-1 set to manually installed. libx11-data is already the newest version (2:1.8.7-1). libx11-data set to manually installed. libqt5gui5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5gui5t64 set to manually installed. libwayland-server0 is already the newest version (1.22.0-2.1+b1). libwayland-server0 set to manually installed. libxshmfence1 is already the newest version (1.3-1). libxshmfence1 set to manually installed. libpcre2-8-0 is already the newest version (10.42-4+b1). libsystemd0 is already the newest version (255.4-1+b1). libpsm-infinipath1 is already the newest version (3.3+20.604758e7-6.3). libpsm-infinipath1 set to manually installed. libctf-nobfd0 is already the newest version (2.42-3). libctf-nobfd0 set to manually installed. liblapack-dev is already the newest version (3.12.0-3). liblapack-dev set to manually installed. usr-is-merged is already the newest version (39). libreadline8t64 is already the newest version (8.2-3.1). libreadline8t64 set to manually installed. libncurses-dev is already the newest version (6.4+20240113-1). libncurses-dev set to manually installed. libblas3 is already the newest version (3.12.0-3). libblas3 set to manually installed. libaudit-common is already the newest version (1:3.1.2-2.1). libsframe1 is already the newest version (2.42-3). libsframe1 set to manually installed. libglx-dev is already the newest version (1.7.0-1). libglx-dev set to manually installed. libcom-err2 is already the newest version (1.47.0-2.4). libcom-err2 set to manually installed. libtrilinos-amesos-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-amesos-13.2 set to manually installed. dpkg is already the newest version (1.22.6). liblqr-1-0 is already the newest version (0.4.2-2.1+b1). liblqr-1-0 set to manually installed. libglapi-mesa is already the newest version (24.0.3-1). libglapi-mesa set to manually installed. libhwloc15 is already the newest version (2.10.0-1+b1). libhwloc15 set to manually installed. libpam-modules-bin is already the newest version (1.5.3-6). base-passwd is already the newest version (3.6.3). libopenjp2-7 is already the newest version (2.5.0-2+b3). libopenjp2-7 set to manually installed. binutils-common is already the newest version (2.42-3). binutils-common set to manually installed. libnl-route-3-200 is already the newest version (3.7.0-0.3). libnl-route-3-200 set to manually installed. libhdf5-cpp-103-1t64 is already the newest version (1.10.10+repack-3.1). libhdf5-cpp-103-1t64 set to manually installed. groff-base is already the newest version (1.23.0-3+b1). groff-base set to manually installed. libpython3.11-stdlib is already the newest version (3.11.8-3). libpython3.11-stdlib set to manually installed. libinput-bin is already the newest version (1.25.0-1+b1). libinput-bin set to manually installed. liblerc-dev is already the newest version (4.0.0+ds-4+b1). liblerc-dev set to manually installed. libxml-libxml-perl is already the newest version (2.0207+dfsg+really+2.0134-1+b3). libxml-libxml-perl set to manually installed. libstdc++-13-dev is already the newest version (13.2.0-18). libstdc++-13-dev set to manually installed. libamdhip64-5 is already the newest version (5.7.1-1). libamdhip64-5 set to manually installed. libx11-dev is already the newest version (2:1.8.7-1). libx11-dev set to manually installed. libxcb-shm0 is already the newest version (1.15-1). libxcb-shm0 set to manually installed. libffi8 is already the newest version (3.4.6-1). libffi8 set to manually installed. findutils is already the newest version (4.9.0-5). file is already the newest version (1:5.45-3). file set to manually installed. libtrilinos-kokkos-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-kokkos-13.2 set to manually installed. libxdmcp6 is already the newest version (1:1.1.2-3). libxdmcp6 set to manually installed. libinput10 is already the newest version (1.25.0-1+b1). libinput10 set to manually installed. libarpack2t64 is already the newest version (3.9.1-1.1). libarpack2t64 set to manually installed. libglvnd0 is already the newest version (1.7.0-1). libglvnd0 set to manually installed. libwebpdemux2 is already the newest version (1.3.2-0.4+b1). libwebpdemux2 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.13.1-1). libfile-stripnondeterminism-perl set to manually installed. python3-setuptools is already the newest version (68.1.2-2). python3-setuptools set to manually installed. xtrans-dev is already the newest version (1.4.0-1). xtrans-dev set to manually installed. libscotch-7.0 is already the newest version (7.0.4-1+b1). libscotch-7.0 set to manually installed. libjack-jackd2-0 is already the newest version (1.9.21~dfsg-3+b3). libjack-jackd2-0 set to manually installed. libsensors5 is already the newest version (1:3.6.0-9). libsensors5 set to manually installed. util-linux is already the newest version (2.39.3-10). libxcb-dri3-0 is already the newest version (1.15-1). libxcb-dri3-0 set to manually installed. libavahi-common-data is already the newest version (0.8-13+b2). libavahi-common-data set to manually installed. libtrilinos-triutils-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-triutils-13.2 set to manually installed. ocl-icd-libopencl1 is already the newest version (2.3.2-1). ocl-icd-libopencl1 set to manually installed. gcc is already the newest version (4:13.2.0-7). gcc set to manually installed. libcrypt-dev is already the newest version (1:4.4.36-4). libcrypt-dev set to manually installed. libdrm-common is already the newest version (2.4.120-2). libdrm-common set to manually installed. libwmflite-0.2-7 is already the newest version (0.2.13-1.1+b2). libwmflite-0.2-7 set to manually installed. libaec0 is already the newest version (1.1.2-1). libaec0 set to manually installed. libssl-dev is already the newest version (3.1.5-1.1). libssl-dev set to manually installed. libtrilinos-epetraext-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-epetraext-13.2 set to manually installed. libglu1-mesa is already the newest version (9.0.2-1.1). libglu1-mesa set to manually installed. libxcb-shape0 is already the newest version (1.15-1). libxcb-shape0 set to manually installed. grep is already the newest version (3.11-4). bc is already the newest version (1.07.1-3+b2). bc set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libnl-3-200 is already the newest version (3.7.0-0.3). libnl-3-200 set to manually installed. libpython3-stdlib is already the newest version (3.11.8-1). libpython3-stdlib set to manually installed. libqt5xml5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5xml5t64 set to manually installed. perl-modules-5.38 is already the newest version (5.38.2-3.2). perl-modules-5.38 set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.5-2+b2). libjpeg62-turbo set to manually installed. ncurses-bin is already the newest version (6.4+20240113-1). libgdbm6t64 is already the newest version (1.23-5.1). libgdbm6t64 set to manually installed. libfftw3-dev is already the newest version (3.3.10-1+b1). libfftw3-dev set to manually installed. libelf1t64 is already the newest version (0.191-1). libelf1t64 set to manually installed. libgnutls30t64 is already the newest version (3.8.3-1.1). libgnutls30t64 set to manually installed. libssh2-1t64 is already the newest version (1.11.0-4.1+b1). libssh2-1t64 set to manually installed. librdmacm1t64 is already the newest version (50.0-2). librdmacm1t64 set to manually installed. libxrender1 is already the newest version (1:0.9.10-1.1). libxrender1 set to manually installed. libgl1 is already the newest version (1.7.0-1). libgl1 set to manually installed. libheif1 is already the newest version (1.17.6-1+b2). libheif1 set to manually installed. libavahi-client3 is already the newest version (0.8-13+b2). libavahi-client3 set to manually installed. libhwy1t64 is already the newest version (1.0.7-8.1). libhwy1t64 set to manually installed. libxdmcp-dev is already the newest version (1:1.1.2-3). libxdmcp-dev set to manually installed. hostname is already the newest version (3.23+nmu2). libqhull-r8.0 is already the newest version (2020.2-6+b1). libqhull-r8.0 set to manually installed. libtsan2 is already the newest version (14-20240303-1). libtsan2 set to manually installed. libcurl3t64-gnutls is already the newest version (8.6.0-3.2). libcurl3t64-gnutls set to manually installed. libopengl-dev is already the newest version (1.7.0-1). libopengl-dev set to manually installed. texinfo is already the newest version (7.1-3). texinfo set to manually installed. libc6-dev is already the newest version (2.37-15.1). libc6-dev set to manually installed. libxcb-sync1 is already the newest version (1.15-1). libxcb-sync1 set to manually installed. gcc-13-base is already the newest version (13.2.0-18). gcc-13-base set to manually installed. libsundials-sunmatrix4 is already the newest version (6.4.1+dfsg1-3+b3). libsundials-sunmatrix4 set to manually installed. openssh-client is already the newest version (1:9.7p1-2). openssh-client set to manually installed. libnuma1 is already the newest version (2.0.18-1). libnuma1 set to manually installed. libxcb1 is already the newest version (1.15-1). libxcb1 set to manually installed. libxcb1-dev is already the newest version (1.15-1). libxcb1-dev set to manually installed. imagemagick is already the newest version (8:6.9.12.98+dfsg1-5.2). imagemagick set to manually installed. libfftw3-bin is already the newest version (3.3.10-1+b1). libfftw3-bin set to manually installed. libgraphicsmagick++-q16-12t64 is already the newest version (1.4+really1.3.42-1.1+b1). libgraphicsmagick++-q16-12t64 set to manually installed. liblsan0 is already the newest version (14-20240303-1). liblsan0 set to manually installed. libsemanage2 is already the newest version (3.5-1+b2). libsemanage2 set to manually installed. perl is already the newest version (5.38.2-3.2). perl set to manually installed. libucx0 is already the newest version (1.16.0+ds-4). libucx0 set to manually installed. libqt5svg5 is already the newest version (5.15.10-2+b2). libqt5svg5 set to manually installed. libstdc++6 is already the newest version (14-20240303-1). libstdc++6 set to manually installed. libxcb-render-util0 is already the newest version (0.3.9-1+b1). libxcb-render-util0 set to manually installed. libeigen3-dev is already the newest version (3.4.0-4). libeigen3-dev set to manually installed. libvorbisenc2 is already the newest version (1.3.7-2). libvorbisenc2 set to manually installed. libice6 is already the newest version (2:1.0.10-1). libice6 set to manually installed. liblapack3 is already the newest version (3.12.0-3). liblapack3 set to manually installed. libgomp1 is already the newest version (14-20240303-1). libgomp1 set to manually installed. bash is already the newest version (5.2.21-2). libzstd1 is already the newest version (1.5.5+dfsg2-2). libpam-runtime is already the newest version (1.5.3-6). libgl2ps1.4 is already the newest version (1.4.2+dfsg1-2). libgl2ps1.4 set to manually installed. libopengl0 is already the newest version (1.7.0-1). libopengl0 set to manually installed. libperl5.38t64 is already the newest version (5.38.2-3.2). libperl5.38t64 set to manually installed. autopoint is already the newest version (0.21-14). autopoint set to manually installed. libxcb-xinerama0 is already the newest version (1.15-1). libxcb-xinerama0 set to manually installed. libjansson4 is already the newest version (2.14-2+b2). libjansson4 set to manually installed. libqt5dbus5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5dbus5t64 set to manually installed. libhdf5-openmpi-103-1 is already the newest version (1.10.10+repack-3+b1). libhdf5-openmpi-103-1 set to manually installed. libqt5opengl5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5opengl5t64 set to manually installed. debianutils is already the newest version (5.17). libc6 is already the newest version (2.37-15.1). libtrilinos-zoltan-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-zoltan-13.2 set to manually installed. libyaml-0-2 is already the newest version (0.2.5-1). libyaml-0-2 set to manually installed. cpp is already the newest version (4:13.2.0-7). cpp set to manually installed. binutils is already the newest version (2.42-3). binutils set to manually installed. libpciaccess0 is already the newest version (0.17-3). libpciaccess0 set to manually installed. libgsl27 is already the newest version (2.7.1+dfsg-6+b1). libgsl27 set to manually installed. libx11-6 is already the newest version (2:1.8.7-1). libx11-6 set to manually installed. m4 is already the newest version (1.4.19-4). m4 set to manually installed. libflac12t64 is already the newest version (1.4.3+ds-2.1). libflac12t64 set to manually installed. libsundials-sunlinsol3 is already the newest version (6.4.1+dfsg1-3+b3). libsundials-sunlinsol3 set to manually installed. xz-utils is already the newest version (5.6.0-0.2). xz-utils set to manually installed. ncurses-base is already the newest version (6.4+20240113-1). libidn2-0 is already the newest version (2.3.7-2). libidn2-0 set to manually installed. libp11-kit0 is already the newest version (0.25.3-4). libp11-kit0 set to manually installed. libpython3.11-minimal is already the newest version (3.11.8-3). libpython3.11-minimal set to manually installed. libqt5opengl5-dev is already the newest version (5.15.10+dfsg-7.2+b1). libqt5opengl5-dev set to manually installed. libxau-dev is already the newest version (1:1.0.9-1). libxau-dev set to manually installed. libheif-plugin-libde265 is already the newest version (1.17.6-1+b2). libheif-plugin-libde265 set to manually installed. libccolamd3 is already the newest version (1:7.6.1+dfsg-1). libccolamd3 set to manually installed. libwebpdecoder3 is already the newest version (1.3.2-0.4+b1). libwebpdecoder3 set to manually installed. libxinerama1 is already the newest version (2:1.1.4-3). libxinerama1 set to manually installed. libxml2 is already the newest version (2.9.14+dfsg-1.3+b2). libxml2 set to manually installed. libk5crypto3 is already the newest version (1.20.1-6). libk5crypto3 set to manually installed. libsuperlu6 is already the newest version (6.0.1+dfsg1-1+b1). libsuperlu6 set to manually installed. openmpi-common is already the newest version (4.1.6-7). openmpi-common set to manually installed. libdeflate-dev is already the newest version (1.19-1). libdeflate-dev set to manually installed. libamd3 is already the newest version (1:7.6.1+dfsg-1). libamd3 set to manually installed. tar is already the newest version (1.35+dfsg-3). libxau6 is already the newest version (1:1.0.9-1). libxau6 set to manually installed. x11proto-dev is already the newest version (2023.2-1). x11proto-dev set to manually installed. libopenmpi3t64 is already the newest version (4.1.6-7). libopenmpi3t64 set to manually installed. libgl1-mesa-dri is already the newest version (24.0.3-1). libgl1-mesa-dri set to manually installed. init-system-helpers is already the newest version (1.66). libblkid1 is already the newest version (2.39.3-10). libxkbcommon0 is already the newest version (1.6.0-1). libxkbcommon0 set to manually installed. libmpg123-0 is already the newest version (1.32.5-1+b1). libmpg123-0 set to manually installed. base-files is already the newest version (13). libfido2-1 is already the newest version (1.14.0-1+b1). libfido2-1 set to manually installed. libbsd0 is already the newest version (0.12.1-1). libbsd0 set to manually installed. pkgconf-bin is already the newest version (1.8.1-1+b2). pkgconf-bin set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:13.2.0-7). g++-x86-64-linux-gnu set to manually installed. libfltk-gl1.3t64 is already the newest version (1.3.8-6.1). libfltk-gl1.3t64 set to manually installed. libmd4c0 is already the newest version (0.4.8-1+b1). libmd4c0 set to manually installed. libhypre-2.28.0 is already the newest version (2.28.0-8). libhypre-2.28.0 set to manually installed. gcc-13 is already the newest version (13.2.0-18). gcc-13 set to manually installed. fontconfig-config is already the newest version (2.15.0-1.1). fontconfig-config set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b3). libbrotli1 set to manually installed. libc-dev-bin is already the newest version (2.37-15.1). libc-dev-bin set to manually installed. sensible-utils is already the newest version (0.0.22). sensible-utils set to manually installed. libpkgconf3 is already the newest version (1.8.1-1+b2). libpkgconf3 set to manually installed. gettext is already the newest version (0.21-14+b1). gettext set to manually installed. libldap-2.5-0 is already the newest version (2.5.16+dfsg-2). libldap-2.5-0 set to manually installed. g++-13-x86-64-linux-gnu is already the newest version (13.2.0-18). g++-13-x86-64-linux-gnu set to manually installed. libtiff6 is already the newest version (4.5.1+git230720-4). libtiff6 set to manually installed. libxml-sax-base-perl is already the newest version (1.09-3). libxml-sax-base-perl set to manually installed. libsmartcols1 is already the newest version (2.39.3-10). libfontconfig1 is already the newest version (2.15.0-1.1). libfontconfig1 set to manually installed. libqt5concurrent5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5concurrent5t64 set to manually installed. libreadline-dev is already the newest version (8.2-3.1). libreadline-dev set to manually installed. libmtdev1t64 is already the newest version (1.1.6-1.1). libmtdev1t64 set to manually installed. libcxsparse4 is already the newest version (1:7.6.1+dfsg-1). libcxsparse4 set to manually installed. passwd is already the newest version (1:4.13+dfsg1-4). passwd set to manually installed. libtrilinos-epetra-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-epetra-13.2 set to manually installed. g++-13 is already the newest version (13.2.0-18). g++-13 set to manually installed. libvorbis0a is already the newest version (1.3.7-2). libvorbis0a set to manually installed. octave is already the newest version (8.4.0-1+b2). octave set to manually installed. libglx-mesa0 is already the newest version (24.0.3-1). libglx-mesa0 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-4+b2). libsasl2-2 set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-4+b2). libsasl2-modules-db set to manually installed. libdav1d7 is already the newest version (1.4.0-1). libdav1d7 set to manually installed. python3-minimal is already the newest version (3.11.8-1). python3-minimal set to manually installed. libopus0 is already the newest version (1.4-1+b1). libopus0 set to manually installed. libscalapack-openmpi2.2 is already the newest version (2.2.1-3+b1). libscalapack-openmpi2.2 set to manually installed. adduser is already the newest version (3.137). adduser set to manually installed. libdbus-1-3 is already the newest version (1.14.10-4+b1). libdbus-1-3 set to manually installed. python3-pkg-resources is already the newest version (68.1.2-2). python3-pkg-resources set to manually installed. libtrilinos-trilinosss-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-trilinosss-13.2 set to manually installed. libgprofng0 is already the newest version (2.42-3). libgprofng0 set to manually installed. libxcb-keysyms1 is already the newest version (0.4.0-1+b2). libxcb-keysyms1 set to manually installed. fontconfig is already the newest version (2.15.0-1.1). fontconfig set to manually installed. libtrilinos-galeri-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-galeri-13.2 set to manually installed. fonts-dejavu-mono is already the newest version (2.37-8). fonts-dejavu-mono set to manually installed. hdf5-helpers is already the newest version (1.10.10+repack-3.1). hdf5-helpers set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. libkrb5support0 is already the newest version (1.20.1-6). libkrb5support0 set to manually installed. libaudit1 is already the newest version (1:3.1.2-2.1). librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b3). librtmp1 set to manually installed. libegl1 is already the newest version (1.7.0-1). libegl1 set to manually installed. libbinutils is already the newest version (2.42-3). libbinutils set to manually installed. linux-libc-dev is already the newest version (6.7.9-2). linux-libc-dev set to manually installed. x11-common is already the newest version (1:7.7+23). x11-common set to manually installed. libtrilinos-teuchos-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-teuchos-13.2 set to manually installed. libsepol2 is already the newest version (3.5-2). libsepol2 set to manually installed. libfftw3-quad3 is already the newest version (3.3.10-1+b1). libfftw3-quad3 set to manually installed. libglu1-mesa-dev is already the newest version (9.0.2-1.1). libglu1-mesa-dev set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. python3-distutils is already the newest version (3.12.2-3). python3-distutils set to manually installed. libnghttp2-14 is already the newest version (1.59.0-1+b1). libnghttp2-14 set to manually installed. bsdutils is already the newest version (1:2.39.3-10). libumfpack6 is already the newest version (1:7.6.1+dfsg-1). libumfpack6 set to manually installed. diffutils is already the newest version (1:3.10-1). libacl1 is already the newest version (2.3.2-1). libedit2 is already the newest version (3.1-20230828-1). libedit2 set to manually installed. libxft2 is already the newest version (2.3.6-1+b1). libxft2 set to manually installed. openmpi-bin is already the newest version (4.1.6-7). openmpi-bin set to manually installed. libseccomp2 is already the newest version (2.5.5-1). libseccomp2 set to manually installed. python3 is already the newest version (3.11.8-1). python3 set to manually installed. libwayland-client0 is already the newest version (1.22.0-2.1+b1). libwayland-client0 set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. dpkg-dev is already the newest version (1.22.6). dpkg-dev set to manually installed. libasound2t64 is already the newest version (1.2.11-1). libasound2t64 set to manually installed. libamd-comgr2 is already the newest version (6.0+git20231212.4510c28+dfsg-3). libamd-comgr2 set to manually installed. libcap2 is already the newest version (1:2.66-5). sysvinit-utils is already the newest version (3.08-7). libspqr4 is already the newest version (1:7.6.1+dfsg-1). libspqr4 set to manually installed. qt5-qmake-bin is already the newest version (5.15.10+dfsg-7.2+b1). qt5-qmake-bin set to manually installed. libxxf86vm1 is already the newest version (1:1.1.4-1+b2). libxxf86vm1 set to manually installed. libxml-sax-perl is already the newest version (1.02+dfsg-3). libxml-sax-perl set to manually installed. libmagickwand-6.q16-7t64 is already the newest version (8:6.9.12.98+dfsg1-5.2). libmagickwand-6.q16-7t64 set to manually installed. g++ is already the newest version (4:13.2.0-7). g++ set to manually installed. libdebconfclient0 is already the newest version (0.271+b2). libjbig0 is already the newest version (2.1-6.1+b1). libjbig0 set to manually installed. libcholmod5 is already the newest version (1:7.6.1+dfsg-1). libcholmod5 set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. libsqlite3-0 is already the newest version (3.45.2-1). libsqlite3-0 set to manually installed. libtinfo6 is already the newest version (6.4+20240113-1). libdrm-nouveau2 is already the newest version (2.4.120-2). libdrm-nouveau2 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg-3.1). zlib1g-dev set to manually installed. cpp-13-x86-64-linux-gnu is already the newest version (13.2.0-18). cpp-13-x86-64-linux-gnu set to manually installed. libxml-namespacesupport-perl is already the newest version (1.12-2). libxml-namespacesupport-perl set to manually installed. libsz2 is already the newest version (1.1.2-1). libsz2 set to manually installed. libmunge2 is already the newest version (0.5.15-3+b1). libmunge2 set to manually installed. libpipeline1 is already the newest version (1.5.7-1+b2). libpipeline1 set to manually installed. libportaudio2 is already the newest version (19.6.0-1.2+b2). libportaudio2 set to manually installed. libsharpyuv-dev is already the newest version (1.3.2-0.4+b1). libsharpyuv-dev set to manually installed. libibverbs1 is already the newest version (50.0-2). libibverbs1 set to manually installed. libvulkan-dev is already the newest version (1.3.275.0-1). libvulkan-dev set to manually installed. libxcb-render0 is already the newest version (1.15-1). libxcb-render0 set to manually installed. mawk is already the newest version (1.3.4.20240123-1). libgssapi-krb5-2 is already the newest version (1.20.1-6). libgssapi-krb5-2 set to manually installed. libsharpyuv0 is already the newest version (1.3.2-0.4+b1). libsharpyuv0 set to manually installed. libasound2-data is already the newest version (1.2.11-1). libasound2-data set to manually installed. libctf0 is already the newest version (2.42-3). libctf0 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg-3.1). libxcb-xkb1 is already the newest version (1.15-1). libxcb-xkb1 set to manually installed. dh-strip-nondeterminism is already the newest version (1.13.1-1). dh-strip-nondeterminism set to manually installed. libgdbm-compat4t64 is already the newest version (1.23-5.1). libgdbm-compat4t64 set to manually installed. libheif-plugin-dav1d is already the newest version (1.17.6-1+b2). libheif-plugin-dav1d set to manually installed. libqt5svg5-dev is already the newest version (5.15.10-2+b2). libqt5svg5-dev set to manually installed. libwacom9 is already the newest version (2.10.0-1+b1). libwacom9 set to manually installed. automake is already the newest version (1:1.16.5-1.3). automake set to manually installed. libcurl4t64 is already the newest version (8.6.0-3.2). libcurl4t64 set to manually installed. qtbase5-dev is already the newest version (5.15.10+dfsg-7.2+b1). qtbase5-dev set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2). libxfixes3 set to manually installed. libxcb-xfixes0 is already the newest version (1.15-1). libxcb-xfixes0 set to manually installed. liblz4-1 is already the newest version (1.9.4-1+b2). libnettle8t64 is already the newest version (3.9.1-2.2). libnettle8t64 set to manually installed. libdrm2 is already the newest version (2.4.120-2). libdrm2 set to manually installed. libaec-dev is already the newest version (1.1.2-1). libaec-dev set to manually installed. autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. gcc-13-x86-64-linux-gnu is already the newest version (13.2.0-18). gcc-13-x86-64-linux-gnu set to manually installed. libraw23t64 is already the newest version (0.21.2-2.1). libraw23t64 set to manually installed. tzdata is already the newest version (2024a-1). tzdata set to manually installed. libbz2-1.0 is already the newest version (1.0.8-5+b2). imagemagick-6-common is already the newest version (8:6.9.12.98+dfsg1-5.2). imagemagick-6-common set to manually installed. libde265-0 is already the newest version (1.0.15-1+b1). libde265-0 set to manually installed. libharfbuzz0b is already the newest version (8.3.0-2+b1). libharfbuzz0b set to manually installed. libgraphite2-3 is already the newest version (1.3.14-2). libgraphite2-3 set to manually installed. libhwloc-plugins is already the newest version (2.10.0-1+b1). libhwloc-plugins set to manually installed. libunistring5 is already the newest version (1.1-2). libunistring5 set to manually installed. libqt5widgets5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5widgets5t64 set to manually installed. sed is already the newest version (4.9-2). texinfo-lib is already the newest version (7.1-3+b1). texinfo-lib set to manually installed. libqt5printsupport5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5printsupport5t64 set to manually installed. libglpk40 is already the newest version (5.0-1+b1). libglpk40 set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:13.2.0-7). gcc-x86-64-linux-gnu set to manually installed. libsm6 is already the newest version (2:1.2.3-1). libsm6 set to manually installed. gcc-14-base is already the newest version (14-20240303-1). libfftw3-mpi3 is already the newest version (3.3.10-1+b1). libfftw3-mpi3 set to manually installed. readline-common is already the newest version (8.2-3.1). readline-common set to manually installed. qtbase5-dev-tools is already the newest version (5.15.10+dfsg-7.2+b1). qtbase5-dev-tools set to manually installed. libubsan1 is already the newest version (14-20240303-1). libubsan1 set to manually installed. libgfortran-13-dev is already the newest version (13.2.0-18). libgfortran-13-dev set to manually installed. libmpc3 is already the newest version (1.3.1-1+b2). libmpc3 set to manually installed. imagemagick-6.q16 is already the newest version (8:6.9.12.98+dfsg1-5.2). imagemagick-6.q16 set to manually installed. libuuid1 is already the newest version (2.39.3-10). libxcursor1 is already the newest version (1:1.2.1-1). libxcursor1 set to manually installed. libxcb-image0 is already the newest version (0.4.0-2+b1). libxcb-image0 set to manually installed. octave-common is already the newest version (8.4.0-1). octave-common set to manually installed. libklu2 is already the newest version (1:7.6.1+dfsg-1). libklu2 set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-2+b1). libdrm-intel1 is already the newest version (2.4.120-2). libdrm-intel1 set to manually installed. python3.11 is already the newest version (3.11.8-3). python3.11 set to manually installed. libwebp7 is already the newest version (1.3.2-0.4+b1). libwebp7 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. bzip2 is already the newest version (1.0.8-5+b2). bzip2 set to manually installed. libc-bin is already the newest version (2.37-15.1). binutils-x86-64-linux-gnu is already the newest version (2.42-3). binutils-x86-64-linux-gnu set to manually installed. libqt5test5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5test5t64 set to manually installed. libcc1-0 is already the newest version (14-20240303-1). libcc1-0 set to manually installed. libgudev-1.0-0 is already the newest version (238-3+b1). libgudev-1.0-0 set to manually installed. libxcb-dri2-0 is already the newest version (1.15-1). libxcb-dri2-0 set to manually installed. libgfortran5 is already the newest version (14-20240303-1). libgfortran5 set to manually installed. libpetsc-real3.19 is already the newest version (3.19.6+dfsg1-2). libpetsc-real3.19 set to manually installed. gettext-base is already the newest version (0.21-14+b1). gettext-base set to manually installed. liblerc4 is already the newest version (4.0.0+ds-4+b1). liblerc4 set to manually installed. libhdf5-dev is already the newest version (1.10.10+repack-3.1). libhdf5-dev set to manually installed. libhdf5-hl-cpp-100t64 is already the newest version (1.10.10+repack-3.1). libhdf5-hl-cpp-100t64 set to manually installed. libpcre2-16-0 is already the newest version (10.42-4+b1). libpcre2-16-0 set to manually installed. libattr1 is already the newest version (1:2.5.2-1). tex-common is already the newest version (6.18). 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libisl23 set to manually installed. libncurses6 is already the newest version (6.4+20240113-1). libncurses6 set to manually installed. libltdl7 is already the newest version (2.4.7-7). libltdl7 set to manually installed. libcamd3 is already the newest version (1:7.6.1+dfsg-1). libcamd3 set to manually installed. libhdf5-103-1t64 is already the newest version (1.10.10+repack-3.1). libhdf5-103-1t64 set to manually installed. libjxl0.7 is already the newest version (0.7.0-10.2+b2). libjxl0.7 set to manually installed. gfortran is already the newest version (4:13.2.0-7). gfortran set to manually installed. libvulkan1 is already the newest version (1.3.275.0-1). libvulkan1 set to manually installed. libsuitesparseconfig7 is already the newest version (1:7.6.1+dfsg-1). libsuitesparseconfig7 set to manually installed. make is already the newest version (4.3-4.1). make set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.120-2). libdrm-amdgpu1 set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. debconf is already the newest version (1.5.86). libmount1 is already the newest version (2.39.3-10). libhdf5-fortran-102t64 is already the newest version (1.10.10+repack-3.1). libhdf5-fortran-102t64 set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:13.2.0-7). cpp-x86-64-linux-gnu set to manually installed. gfortran-x86-64-linux-gnu is already the newest version (4:13.2.0-7). gfortran-x86-64-linux-gnu set to manually installed. libexpat1 is already the newest version (2.6.2-1). libexpat1 set to manually installed. libncursesw6 is already the newest version (6.4+20240113-1). libncursesw6 set to manually installed. libmumps-5.6 is already the newest version (5.6.2-2+b1). libmumps-5.6 set to manually installed. libatomic1 is already the newest version (14-20240303-1). libatomic1 set to manually installed. libmd0 is already the newest version (1.1.0-2). libtiff-dev is already the newest version (4.5.1+git230720-4). libtiff-dev set to manually installed. libxcb-present0 is already the newest version (1.15-1). libxcb-present0 set to manually installed. libcbor0.10 is already the newest version (0.10.2-1.2). libcbor0.10 set to manually installed. libevent-pthreads-2.1-7t64 is already the newest version (2.1.12-stable-8.1+b1). libevent-pthreads-2.1-7t64 set to manually installed. libqrupdate1 is already the newest version (1.1.2-4+b1). libqrupdate1 set to manually installed. libhdf5-hl-fortran-100t64 is already the newest version (1.10.10+repack-3.1). libhdf5-hl-fortran-100t64 set to manually installed. libwebpmux3 is already the newest version (1.3.2-0.4+b1). libwebpmux3 set to manually installed. libgbm1 is already the newest version (24.0.3-1). libgbm1 set to manually installed. libmpfr6 is already the newest version (4.2.1-1+b1). libmpfr6 set to manually installed. libjpeg-dev is already the newest version (1:2.1.5-2+b2). libjpeg-dev set to manually installed. fonts-dejavu-core is already the newest version (2.37-8). fonts-dejavu-core set to manually installed. libdebhelper-perl is already the newest version (13.14.1). libdebhelper-perl set to manually installed. dh-python is already the newest version (6.20240310). dh-python set to manually installed. libfabric1 is already the newest version (1.17.0-3). libfabric1 set to manually installed. libfreetype6 is already the newest version (2.13.2+dfsg-1+b2). libfreetype6 set to manually installed. liblzma5 is already the newest version (5.6.0-0.2). libsensors-config is already the newest version (1:3.6.0-9). libsensors-config set to manually installed. python3.11-minimal is already the newest version (3.11.8-3). python3.11-minimal set to manually installed. libogg0 is already the newest version (1.3.5-3). libogg0 set to manually installed. libpng16-16t64 is already the newest version (1.6.43-3). libpng16-16t64 set to manually installed. hicolor-icon-theme is already the newest version (0.17-2). hicolor-icon-theme set to manually installed. libtasn1-6 is already the newest version (4.19.0-3+b2). libtasn1-6 set to manually installed. qt5-qmake is already the newest version (5.15.10+dfsg-7.2+b1). qt5-qmake set to manually installed. libjbig-dev is already the newest version (2.1-6.1+b1). libjbig-dev set to manually installed. libcolamd3 is already the newest version (1:7.6.1+dfsg-1). libcolamd3 set to manually installed. libwebp-dev is already the newest version (1.3.2-0.4+b1). libwebp-dev set to manually installed. libselinux1 is already the newest version (3.5-2). libhwasan0 is already the newest version (14-20240303-1). libhwasan0 set to manually installed. libpmix2t64 is already the newest version (5.0.1-4.1). libpmix2t64 set to manually installed. libsemanage-common is already the newest version (3.5-1). libsemanage-common set to manually installed. libcrypt1 is already the newest version (1:4.4.36-4). libsamplerate0 is already the newest version (0.2.2-4). libsamplerate0 set to manually installed. libitm1 is already the newest version (14-20240303-1). libitm1 set to manually installed. libsundials-ida6 is already the newest version (6.4.1+dfsg1-3+b3). libsundials-ida6 set to manually installed. libzstd-dev is already the newest version (1.5.5+dfsg2-2). libzstd-dev set to manually installed. perl-base is already the newest version (5.38.2-3.2). libqt5network5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5network5t64 set to manually installed. libxcb-icccm4 is already the newest version (0.4.1-1.1+b1). libxcb-icccm4 set to manually installed. libqscintilla2-qt5-l10n is already the newest version (2.14.1+dfsg-1). libqscintilla2-qt5-l10n set to manually installed. libcap-ng0 is already the newest version (0.8.4-2). libdeflate0 is already the newest version (1.19-1). libdeflate0 set to manually installed. libpam-modules is already the newest version (1.5.3-6). libcups2t64 is already the newest version (2.4.7-1.2+b1). libcups2t64 set to manually installed. qtchooser is already the newest version (66-2). qtchooser set to manually installed. debhelper is already the newest version (13.14.1). debhelper set to manually installed. libhogweed6t64 is already the newest version (3.9.1-2.2). libhogweed6t64 set to manually installed. libxext-dev is already the newest version (2:1.3.4-1+b1). libxext-dev set to manually installed. libicu72 is already the newest version (72.1-4+b1). libicu72 set to manually installed. libmagic1t64 is already the newest version (1:5.45-3). libmagic1t64 set to manually installed. libfftw3-double3 is already the newest version (3.3.10-1+b1). libfftw3-double3 set to manually installed. libfftw3-long3 is already the newest version (3.3.10-1+b1). libfftw3-long3 set to manually installed. libglx0 is already the newest version (1.7.0-1). libglx0 set to manually installed. libwacom-common is already the newest version (2.10.0-1). libwacom-common set to manually installed. libquadmath0 is already the newest version (14-20240303-1). libquadmath0 set to manually installed. xorg-sgml-doctools is already the newest version (1:1.11-1.1). xorg-sgml-doctools set to manually installed. libgraphicsmagick-q16-3t64 is already the newest version (1.4+really1.3.42-1.1+b1). libgraphicsmagick-q16-3t64 set to manually installed. libqt5help5 is already the newest version (5.15.10-6+b1). libqt5help5 set to manually installed. ucf is already the newest version (3.0043+nmu1). ucf set to manually installed. libevdev2 is already the newest version (1.13.1+dfsg-1). libevdev2 set to manually installed. mpi-default-bin is already the newest version (1.15). mpi-default-bin set to manually installed. build-essential is already the newest version (12.10). build-essential set to manually installed. libxnvctrl0 is already the newest version (525.147.05-1). libxnvctrl0 set to manually installed. libmagickcore-6.q16-7t64 is already the newest version (8:6.9.12.98+dfsg1-5.2). libmagickcore-6.q16-7t64 set to manually installed. libpthread-stubs0-dev is already the newest version (0.4-1). libpthread-stubs0-dev set to manually installed. libsndfile1 is already the newest version (1.2.2-1+b1). libsndfile1 set to manually installed. libdouble-conversion3 is already the newest version (3.3.0-1+b1). libdouble-conversion3 set to manually installed. libcombblas2.0.0 is already the newest version (2.0.0-3+b1). libcombblas2.0.0 set to manually installed. libpam0g is already the newest version (1.5.3-6). bsdextrautils is already the newest version (2.39.3-10). bsdextrautils set to manually installed. gzip is already the newest version (1.12-1). libevent-core-2.1-7t64 is already the newest version (2.1.12-stable-8.1+b1). libevent-core-2.1-7t64 set to manually installed. gfortran-13-x86-64-linux-gnu is already the newest version (13.2.0-18). gfortran-13-x86-64-linux-gnu set to manually installed. libqt5sql5t64 is already the newest version (5.15.10+dfsg-7.2+b1). libqt5sql5t64 set to manually installed. libxcb-glx0 is already the newest version (1.15-1). libxcb-glx0 set to manually installed. matlab-support-dev is already the newest version (0.1). matlab-support-dev set to manually installed. libgpg-error0 is already the newest version (1.47-3). libxcb-xinput0 is already the newest version (1.15-1). libxcb-xinput0 set to manually installed. libhdf5-hl-100t64 is already the newest version (1.10.10+repack-3.1). libhdf5-hl-100t64 set to manually installed. libpsm2-2 is already the newest version (11.2.185-2). libpsm2-2 set to manually installed. libxcb-util1 is already the newest version (0.4.0-1+b1). libxcb-util1 set to manually installed. libmp3lame0 is already the newest version (3.100-6+b2). libmp3lame0 set to manually installed. libegl-dev is already the newest version (1.7.0-1). libegl-dev set to manually installed. libx11-xcb1 is already the newest version (2:1.8.7-1). libx11-xcb1 set to manually installed. libhsakmt1 is already the newest version (5.7.0-1). libhsakmt1 set to manually installed. shared-mime-info is already the newest version (2.4-3). shared-mime-info set to manually installed. libdrm-radeon1 is already the newest version (2.4.120-2). libdrm-radeon1 set to manually installed. libtrilinos-ifpack-13.2 is already the newest version (13.2.0-5+b1). libtrilinos-ifpack-13.2 set to manually installed. libgcc-13-dev is already the newest version (13.2.0-18). libgcc-13-dev set to manually installed. liblzma-dev is already the newest version (5.6.0-0.2). liblzma-dev set to manually installed. media-types is already the newest version (10.1.0). media-types set to manually installed. gfortran-13 is already the newest version (13.2.0-18). gfortran-13 set to manually installed. dash is already the newest version (0.5.12-6). libkrb5-3 is already the newest version (1.20.1-6). libkrb5-3 set to manually installed. libxcb-randr0 is already the newest version (1.15-1). libxcb-randr0 set to manually installed. The following NEW packages will be installed: pkg-config 127.0.0.1 - - [15/Jun/2025 03:23:28] "GET /./pkg-config_1.8.1-1%2bb2_amd64.deb HTTP/1.1" 200 - 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 14.0 kB of archives. After this operation, 30.7 kB of additional disk space will be used. Get:1 http://localhost:39107 ./ pkg-config 1.8.1-1+b2 [14.0 kB] Fetched 14.0 kB in 0s (1331 kB/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR/ Selecting previously unselected package pkg-config:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29413 files and directories currently installed.) Preparing to unpack .../pkg-config_1.8.1-1+b2_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1+b2) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR/ Setting up pkg-config:amd64 (1.8.1-1+b2) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR (Reading database ... 29419 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: PID 7023 exited with exit code 0 I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.ApVIcXyYYR... I: success in 107.9417 seconds Downloading dependency 502 of 510: libdrm-radeon1:amd64=2.4.120-2 Downloading dependency 503 of 510: libtrilinos-ifpack-13.2:amd64=13.2.0-5+b1 Downloading dependency 504 of 510: libgcc-13-dev:amd64=13.2.0-18 Downloading dependency 505 of 510: liblzma-dev:amd64=5.6.0-0.2 Downloading dependency 506 of 510: media-types:amd64=10.1.0 Downloading dependency 507 of 510: gfortran-13:amd64=13.2.0-18 Downloading dependency 508 of 510: dash:amd64=0.5.12-6 Downloading dependency 509 of 510: libkrb5-3:amd64=1.20.1-6 Downloading dependency 510 of 510: libxcb-randr0:amd64=1.15-1 env --chdir=/srv/rebuilderd/tmp/rebuilderdWp4pKu/out DEB_BUILD_OPTIONS=parallel=6 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 SOURCE_DATE_EPOCH=1710604576 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildZLGcuR/debrebuild.sbuildrc.MKebSMG0_KZi sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --binNMU-changelog= mrtrix3 (3.0.4-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for time_t -- all / amd64 / i386 Build Daemon (x86-conova-01) Sat, 16 Mar 2024 15:56:16 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildZLGcuR/debrebuild.tar.3aZjQNMWA8dD --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mrtrix3-3.0.4 /srv/rebuilderd/tmp/rebuilderdWp4pKu/inputs/mrtrix3_3.0.4-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3 (07 June 2025) on osuosl4-amd64.reproducible.osuosl.org +==============================================================================+ | mrtrix3 3.0.4-1+b1 (amd64) Sun, 15 Jun 2025 03:23:51 +0000 | +==============================================================================+ Package: mrtrix3 Version: 3.0.4-1+b1 Source Version: 3.0.4-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildZLGcuR/debrebuild.tar.3aZjQNMWA8dD to /srv/rebuilderd/tmp/tmp.sbuild.95CTZatcL_... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sun, 15 Jun 2025 03:23:59 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdWp4pKu/inputs/mrtrix3_3.0.4-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdWp4pKu/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 15 Jun 2025 03:24:01 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkg-config, imagemagick, libtiff-dev, matlab-support-dev, bc, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkg-config, imagemagick, libtiff-dev, matlab-support-dev, bc, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-uglid6/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sun, 15 Jun 2025 03:24:07 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64 arm64 all) +------------------------------------------------------------------------------+ | Build environment Sun, 15 Jun 2025 03:24:08 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.30-1 (2025-05-28) amd64 (x86_64) Toolchain package versions: binutils_2.42-3 dpkg-dev_1.22.6 g++-13_13.2.0-18 gcc-13_13.2.0-18 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-18 libstdc++6_14-20240303-1 linux-libc-dev_6.7.9-2 Package versions: adduser_3.137 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 bc_1.07.1-3+b2 binutils_2.42-3 binutils-common_2.42-3 binutils-x86-64-linux-gnu_2.42-3 bsdextrautils_2.39.3-10 bsdutils_1:2.39.3-10 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b2 cpp_4:13.2.0-7 cpp-13_13.2.0-18 cpp-13-x86-64-linux-gnu_13.2.0-18 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-6 debconf_1.5.86 debhelper_13.14.1 debianutils_5.17 dh-autoreconf_20 dh-python_6.20240310 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 file_1:5.45-3 findutils_4.9.0-5 fontconfig_2.15.0-1.1 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-7 g++-13_13.2.0-18 g++-13-x86-64-linux-gnu_13.2.0-18 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-18 gcc-13-base_13.2.0-18 gcc-13-x86-64-linux-gnu_13.2.0-18 gcc-14-base_14-20240303-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gfortran_4:13.2.0-7 gfortran-13_13.2.0-18 gfortran-13-x86-64-linux-gnu_13.2.0-18 gfortran-x86-64-linux-gnu_4:13.2.0-7 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1 hdf5-helpers_1.10.10+repack-3.1 hicolor-icon-theme_0.17-2 hostname_3.23+nmu2 ibverbs-providers_50.0-2 imagemagick_8:6.9.12.98+dfsg1-5.2 imagemagick-6-common_8:6.9.12.98+dfsg1-5.2 imagemagick-6.q16_8:6.9.12.98+dfsg1-5.2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libaec-dev_1.1.2-1 libaec0_1.1.2-1 libamd-comgr2_6.0+git20231212.4510c28+dfsg-3 libamd3_1:7.6.1+dfsg-1 libamdhip64-5_5.7.1-1 libarchive-zip-perl_1.68-1 libarpack2t64_3.9.1-1.1 libasan8_14-20240303-1 libasound2-data_1.2.11-1 libasound2t64_1.2.11-1 libatomic1_14-20240303-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libavahi-client3_0.8-13+b2 libavahi-common-data_0.8-13+b2 libavahi-common3_0.8-13+b2 libbinutils_2.42-3 libblas-dev_3.12.0-3 libblas3_3.12.0-3 libblkid1_2.39.3-10 libbrotli1_1.1.0-2+b3 libbsd0_0.12.1-1 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mrtrix3 Binary: mrtrix3, mrtrix3-doc Architecture: any-amd64 arm64 all Version: 3.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Michael Hanke , Yaroslav Halchenko , Étienne Mollier Homepage: https://www.mrtrix.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/mrtrix3 Vcs-Git: https://salsa.debian.org/med-team/mrtrix3.git Build-Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkg-config, imagemagick, libtiff-dev, matlab-support-dev, bc Package-List: mrtrix3 deb science optional arch=any-amd64,arm64 mrtrix3-doc deb doc optional arch=all Checksums-Sha1: e19c1c6e36e808dcbee2d3299b2c2313c860ee38 2551340 mrtrix3_3.0.4.orig.tar.gz 3167b9fd7957b9caef294b1215971e299f6f3b7f 9652 mrtrix3_3.0.4-1.debian.tar.xz Checksums-Sha256: f1d1aa289cfc3e46e3a8eca93594b23d061c6d50a0cd03727433a7e2cd14f71a 2551340 mrtrix3_3.0.4.orig.tar.gz fae513ffec0fe598cde595c869b88afc2dc6cb1bc19999f5ed3bd6b03519d412 9652 mrtrix3_3.0.4-1.debian.tar.xz Files: 7ef7e572afc3008f283cf534530f6d97 2551340 mrtrix3_3.0.4.orig.tar.gz a98a9097b966bdd08417e291d0beaacd 9652 mrtrix3_3.0.4-1.debian.tar.xz Dgit: 1ca687099353fd3aa64c2680aa6c8bdfed083a20 debian archive/debian/3.0.4-1 https://git.dgit.debian.org/mrtrix3 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTWTcgUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpyBhAAn9AASsUacO+mkMdrfZsYwDnMj+oT +0b1XMYJg5TCIkeOLJ5EY5CIYLn0kFOTPV+UyBcdMDAuoBxTod1cA872iv9n6GJq vQDe1taiRgeOd+QrucWEe2WCX9xnco/rAHrQlC1H+K+WE/UlAoaFAg3u6tzOuUA2 yhyv3gD+BQNZqCvsFuL5j1pNWFS29Wg7rr7+0RAsW6IsgRaAzlDdmzF0NFa7MIdb /8GSMur6X8l0dwzrVGmA/EyWBetSgj9iiiXE1gmJc6yCZqBZhzxNlz/gIou4WWbT sqG4Joy8zNvn9mroB4T5NQK6x3PBKE8YPT2jjsv3SJiO1Uhcd11NEMJYnhTharnU Rm4dFDTr99jsB52vngsxHMSOwAcqVq4iMLgoL+bX4fAVBmxnKl/DWKYepwCk5ewP 9exWZKOdgiDsGzBwj7Uk3xRINOyQf7MwWToa5JHP0HK+zN13HW1CAPQQALIkvUYA XqjQlNbNCQVcX1ZO7yIyoGMbTRXKsVZuMUE9gtjO3qEpaVwxc13Iqn0kAQWDtVfc z9V1ldMa+37e5tF1STDC2LqQUU8YjqO1+ftrcD6w2AY4pazMgKuPMhdMgcGrkWvT UoOH8XJIot//fDP97yneiYd6LDkl78FRbGe+VVTTyC/RZy+y3Gwx1E/eC+lTCxFp ZTKpw2IIeBzFYiQ= =msa5 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./mrtrix3_3.0.4-1.dsc: unsupported subcommand dpkg-source: info: extracting mrtrix3 in /build/reproducible-path/mrtrix3-3.0.4 dpkg-source: info: unpacking mrtrix3_3.0.4.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch dpkg-source: info: applying mrtrix_version.patch Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/reproducible-path/resolver-uglid6/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 3.0.4-1+b1 +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sun, 15 Jun 2025 03:24:14 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/mrtrix3-3.0.4/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/mrtrix3-3.0.4/debian/control" -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/mrtrix3-3.0.4/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/mrtrix3-3.0.4/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1710604576 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0.4-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' [ -f config ] && python3 ./build clean || true find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \ icons/mrview.qrc icons/shview.qrc rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'build.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory rm: cannot remove 'icons/mrview.qrc': No such file or directory rm: cannot remove 'icons/shview.qrc': No such file or directory make[1]: [debian/rules:76: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 13.2.0-18) 13.2.0 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.5.1 Checking for PNG library: not found - PNG support disabled Checking for FFTW library: fftw-3.3.10-sse2-avx Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.15.10) Checking for Qt qmake: qmake (version 5.15.10) Checking for Qt rcc: rcc (version 5.15.10) Checking for Qt: 5.15.10 writing configuration to file './config': ok make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' ./build -verbose active config is default reading configuration from "config"... is_likely_text: bin/5ttgen: starts with shebang is_likely_text: bin/blend: starts with shebang is_likely_text: bin/convert_bruker: starts with shebang is_likely_text: bin/dwi2response: starts with shebang is_likely_text: bin/dwibiascorrect: starts with shebang is_likely_text: bin/dwicat: starts with shebang is_likely_text: bin/dwifslpreproc: starts with shebang is_likely_text: bin/dwigradcheck: starts with shebang is_likely_text: bin/dwinormalise: starts with shebang is_likely_text: bin/dwishellmath: starts with shebang is_likely_text: bin/for_each: starts with shebang is_likely_text: bin/gen_scheme: starts with shebang is_likely_text: bin/labelsgmfix: starts with shebang is_likely_text: bin/mrtrix3.py: utf-8 encoded is_likely_text: bin/mrtrix_cleanup: starts with shebang is_likely_text: bin/notfound: starts with shebang is_likely_text: bin/population_template: starts with shebang is_likely_text: bin/responsemean: starts with shebang getting MRtrix version from folder "."... fetching version information from "MRTRIX_BASE_VERSION" in "./core/version.h": 3.0.4 Using MRtrix version "3.0.4" version file "./core/version.cpp" is out of date - updating version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/5tt2vis bin/mraverageheader bin/mrcolour bin/mrtransform bin/tckgen bin/transformcalc bin/amp2sh bin/mrthreshold bin/mredit bin/warpinit bin/5tt2gmwmi bin/tck2connectome bin/sh2amp bin/afdconnectivity bin/fixel2tsf bin/shconv bin/5ttedit bin/fixelcrop bin/fixelreorient bin/mrgrid bin/fixelcfestats bin/warpconvert bin/tckstats bin/labelconvert bin/mrmetric bin/tckinfo bin/tsfdivide bin/vectorstats bin/tcksift bin/label2colour bin/dirgen bin/peaks2fixel bin/warp2metric bin/tck2fixel bin/tsfvalidate bin/fixelconvert bin/transformconvert bin/tcktransform bin/shview bin/dwi2adc bin/mrhistogram bin/mrstats bin/dwi2tensor bin/label2mesh bin/mrfilter bin/warpinvert bin/tckmap bin/voxel2mesh bin/tensor2metric bin/fod2fixel bin/mrcalc bin/tckresample bin/dwi2mask bin/dwiextract bin/5ttcheck bin/connectomeedit bin/tckconvert bin/tsfsmooth bin/mrcentroid bin/mrcheckerboardmask bin/mesh2voxel bin/mrdump bin/tsfthreshold bin/mrview bin/mrdegibbs bin/sh2response bin/mrmath bin/dirstat bin/fixelfilter bin/mrcat bin/sh2peaks bin/dirsplit bin/dcminfo bin/fixel2peaks bin/dwi2fod bin/shbasis bin/dirorder bin/tsfmult bin/tsfinfo bin/dwidenoise bin/fod2dec bin/voxel2fixel bin/connectomestats bin/mtnormalise bin/mrhistmatch bin/maskdump bin/meshconvert bin/mrclusterstats bin/mrregister bin/sh2power bin/meshfilter bin/fixelcorrespondence bin/dcmedit bin/peaks2amp bin/amp2response bin/tckdfc bin/mrinfo bin/tckedit bin/mrconvert bin/maskfilter bin/fixel2sh bin/dirmerge bin/tcksift2 bin/tcksample bin/tckglobal bin/warpcorrect bin/connectome2tck bin/transformcompose bin/labelstats bin/dirflip bin/fixelconnectivity bin/fixel2voxel TODO list contains 546 items Build will use 24 threads ( 1/546) [CC] tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o ( 2/546) [CC] tmp/src/dwi/tractography/properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o ( 3/546) [CC] tmp/core/thread.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/thread.cpp -o tmp/core/thread.o ( 5/546) [CC] tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o ( 4/546) [CC] tmp/src/dwi/tractography/rng.o ( 6/546) [CC] tmp/core/formats/mrtrix_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o ( 7/546) [CC] tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o ( 9/546) [CC] tmp/core/file/dicom/dict.o ( 8/546) [CC] tmp/core/stride.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/stride.cpp -o tmp/core/stride.o ( 11/546) [CC] tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/mgh.cpp -o tmp/core/file/mgh.o ( 12/546) [CC] tmp/core/math/stats/glm.o ( 13/546) [CC] tmp/core/file/png.o ( 10/546) [CC] tmp/core/math/stats/shuffle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o ( 14/546) [CC] tmp/core/file/nifti_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/png.cpp -o tmp/core/file/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/stats/shuffle.cpp -o tmp/core/math/stats/shuffle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT 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-c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/ram.cpp -o tmp/core/formats/ram.o ( 17/546) [CC] tmp/core/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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19/546) [CC] tmp/core/formats/nifti1_gz.o ( 20/546) [CC] tmp/core/formats/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/png.cpp -o tmp/core/formats/png.o ( 21/546) [CC] tmp/core/file/dicom/quick_scan.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall 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-D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o ( 24/546) [CC] tmp/core/file/config.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT 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with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/exception.cpp -o tmp/core/exception.o ( 27/546) [CC] tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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29/546) [CC] tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o ( 30/546) [CC] tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong 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-D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o ( 34/546) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT 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with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o ( 70/546) [CC] tmp/core/dwi/shells.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o ( 80/546) [CC] tmp/core/formats/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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82/546) [CC] tmp/core/formats/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/pipe.cpp -o tmp/core/formats/pipe.o ( 83/546) [CC] tmp/core/formats/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o ( 84/546) [CC] tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/base.cpp -o tmp/core/image_io/base.o ( 85/546) [CC] tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o ( 86/546) [CC] tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o ( 87/546) [CC] tmp/src/exec_version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o ( 88/546) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/multi_contrast.cpp -o tmp/src/registration/multi_contrast.o ( 89/546) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o ( 90/546) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o ( 91/546) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o ( 92/546) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o ( 93/546) [CC] tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o ( 94/546) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o ( 95/546) [CC] tmp/src/colourmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/colourmap.cpp -o tmp/src/colourmap.o ( 96/546) [CC] tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o ( 97/546) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o ( 98/546) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o ( 99/546) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o (100/546) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/13/bits/exception_ptr.h:41, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/13/bits/move.h:198:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/13/bits/move.h:198:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/13/bits/move.h:198:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/13/bits/move.h:198:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/13/bits/move.h:198:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (101/546) [CC] tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o (102/546) [CC] tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o (103/546) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o (104/546) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o (105/546) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD1.cpp -o tmp/src/dwi/tractography/algorithms/iFOD1.o (106/546) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o (107/546) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o (108/546) [CC] tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o (109/546) [CC] tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o (110/546) [CC] tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o (111/546) [CC] tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o (112/546) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o (113/546) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o (114/546) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o (115/546) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o (116/546) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o (117/546) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o (118/546) [CC] tmp/src/dwi/tractography/mapping/voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o (119/546) [CC] tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o (120/546) [CC] tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o (121/546) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o (122/546) [CC] tmp/src/dwi/tractography/mapping/mapping.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o (123/546) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o (124/546) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o (125/546) [CC] tmp/src/dwi/tractography/resampling/resampling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o (126/546) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o (127/546) [CC] tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o (128/546) [CC] tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o (129/546) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o (130/546) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/seeding/dynamic.h:207:49: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (131/546) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o (132/546) [CC] tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o (133/546) [CC] tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o (134/546) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o (135/546) [CC] tmp/cmd/tck2connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o (136/546) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o (137/546) [CC] tmp/src/dwi/tractography/weights.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o (138/546) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o (139/546) [CC] tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o (140/546) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o (141/546) [CC] tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o (142/546) [CC] tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o (143/546) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o (144/546) [CC] tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o (145/546) [CC] tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/seeding/dynamic.h:207:49: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (146/546) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o (147/546) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o (148/546) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o (149/546) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o (150/546) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o (151/546) [CC] tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o: In file included from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = MR::DWI::FMLS::SH_coefs]’: ./core/math/SH.h:604:33: warning: ‘*AL[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (152/546) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o (153/546) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o (154/546) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o (155/546) [CC] tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o (156/546) [CC] tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o (157/546) [CC] tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o (158/546) [CC] tmp/src/connectome/lut.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o (159/546) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o (160/546) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o (161/546) [CC] tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o (162/546) [CC] tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o (163/546) [CC] tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o (164/546) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 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/usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o (166/546) [CC] tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o (167/546) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 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-idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/peaks2fixel.cpp -o tmp/cmd/peaks2fixel.o (173/546) [CC] tmp/cmd/warp2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o (174/546) [CC] tmp/cmd/tck2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o (175/546) [CC] tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/cmd/tsfvalidate.o (177/546) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o (178/546) [CC] tmp/cmd/transformconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o (179/546) [CC] tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o (180/546) [CC] tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ cmd/afdconnectivity.cpp:123:57: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘Fixel::Fixel(const Fixel&)’ at cmd/afdconnectivity.cpp:107:70, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’ at src/dwi/fixel_map.h:47:28: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (181/546) [CC] tmp/src/gui/shview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/file_open.cpp -o tmp/src/gui/shview/file_open.o (182/546) [MOC] tmp/src/gui/shview/render_window_moc.cpp moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp (183/546) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o (184/546) [RCC] tmp/src/gui/shview/icons.cpp rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp (185/546) [CC] tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o (186/546) [CC] tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o (187/546) [CC] tmp/src/gui/opengl/shader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o (188/546) [CC] tmp/src/gui/shapes/halfsphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o (189/546) [CC] tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/shview.cpp -o tmp/cmd/shview.o (190/546) [CC] tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o (191/546) [CC] tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o (192/546) [LD] lib/libmrtrix.so g++ tmp/core/thread.o tmp/core/formats/mrtrix_utils.o tmp/core/file/dicom/dict.o tmp/core/image_io/default.o tmp/core/stride.o tmp/core/file/mgh.o tmp/core/math/stats/shuffle.o tmp/core/math/stats/glm.o tmp/core/file/png.o tmp/core/file/nifti_utils.o tmp/core/formats/mri.o tmp/core/image_io/sparse.o tmp/core/dwi/gradient.o tmp/core/formats/ram.o tmp/core/formats/png.o tmp/core/formats/nifti1_gz.o tmp/core/file/dicom/quick_scan.o tmp/core/math/betainc.o tmp/core/file/config.o tmp/core/formats/dicom.o tmp/core/formats/par.o tmp/core/exception.o tmp/core/formats/xds.o tmp/core/file/dicom/study.o tmp/core/formats/nifti1.o tmp/core/file/dicom/series.o tmp/core/file/dicom/patient.o tmp/core/image_io/scratch.o tmp/core/formats/mgz.o tmp/core/math/average_space.o tmp/core/signal_handler.o tmp/core/stats.o tmp/core/phase_encoding.o tmp/core/misc/bitset.o tmp/core/version.o tmp/core/mrtrix.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/image_io/png.o tmp/core/image_io/variable_scaling.o tmp/core/math/erfinv.o tmp/core/axes.o tmp/core/filter/connected_components.o tmp/core/file/json_utils.o tmp/core/file/tiff.o tmp/core/file/key_value.o tmp/core/file/mmap.o tmp/core/file/dicom/element.o tmp/core/file/dicom/mapper.o tmp/core/formats/mrtrix_gz.o tmp/core/file/name_parser.o tmp/core/formats/tiff.o tmp/core/math/bessel.o tmp/core/math/zstatistic.o tmp/core/image_io/mosaic.o tmp/core/datatype.o tmp/core/image_io/pipe.o tmp/core/math/SH.o tmp/core/file/ofstream.o tmp/core/file/dicom/select_cmdline.o tmp/core/formats/nifti2.o tmp/core/app.o tmp/core/file/dicom/tree.o tmp/core/progressbar.o tmp/core/math/stats/fwe.o tmp/core/image_io/ram.o tmp/core/dwi/shells.o tmp/core/image_io/fetch_store.o tmp/core/image_io/gz.o tmp/core/adapter/reslice.o tmp/core/math/stats/import.o tmp/core/file/dicom/image.o tmp/core/formats/mgh.o tmp/core/algo/histogram.o tmp/core/header.o tmp/core/image_io/tiff.o tmp/core/formats/list.o tmp/core/formats/nifti2_gz.o tmp/core/formats/pipe.o tmp/core/formats/mrtrix.o tmp/core/image_io/base.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -o lib/libmrtrix.so (193/546) [CC] tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o (194/546) [CC] tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/projection.cpp -o tmp/src/gui/projection.o (195/546) [CC] tmp/src/gui/lighting_dock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o (196/546) [MOC] tmp/src/gui/color_button_moc.cpp moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp (197/546) [CC] tmp/src/gui/color_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o (198/546) [CC] tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o (199/546) [MOC] tmp/src/gui/opengl/lighting_moc.cpp moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp (200/546) [CC] tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o (201/546) [LB] bin/5tt2vis g++ tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis (202/546) [LB] bin/mrcolour g++ tmp/cmd/mrcolour.o tmp/src/colourmap.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcolour (203/546) [LB] bin/amp2sh g++ tmp/cmd/amp2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh (204/546) [LB] bin/mrthreshold g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold (205/546) [LB] bin/mredit g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit (206/546) [LB] bin/warpinit g++ tmp/cmd/warpinit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit (207/546) [LB] bin/5tt2gmwmi g++ tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi (208/546) [LB] bin/tck2connectome g++ tmp/src/dwi/tractography/file_base.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/connectome/matrix.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome (209/546) [LB] bin/sh2amp g++ tmp/src/exec_version.o tmp/cmd/sh2amp.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp (210/546) [LB] bin/afdconnectivity g++ tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity (211/546) [LB] bin/fixel2tsf g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf (212/546) [LB] bin/shconv g++ tmp/cmd/shconv.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv (213/546) [LB] bin/5ttedit g++ tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/seeding/list.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit (214/546) [LB] bin/fixelcrop g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop (215/546) [LB] bin/fixelreorient g++ tmp/src/exec_version.o tmp/cmd/fixelreorient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient (216/546) [LB] bin/mrgrid g++ tmp/cmd/mrgrid.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrgrid (217/546) [LB] bin/warpconvert g++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert (218/546) [LB] bin/tckstats g++ tmp/src/dwi/tractography/file_base.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats (219/546) [LB] bin/labelconvert g++ tmp/src/connectome/connectome.o tmp/cmd/labelconvert.o tmp/src/connectome/lut.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert (220/546) [LB] bin/tckinfo g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/cmd/tckinfo.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo (221/546) [LB] bin/tsfdivide g++ tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfdivide.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide (222/546) [LB] bin/vectorstats g++ tmp/src/stats/permtest.o tmp/cmd/vectorstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats (223/546) [LB] bin/label2colour g++ tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/src/connectome/lut.o tmp/cmd/label2colour.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour (224/546) [LB] bin/dirgen g++ tmp/src/exec_version.o tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen (225/546) [LB] bin/fixelcfestats g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/fixelcfestats.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/file_base.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/set.o tmp/src/fixel/filter/smooth.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/stats/permtest.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats (226/546) [LB] bin/peaks2fixel g++ tmp/cmd/peaks2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2fixel (227/546) [LB] bin/tsfvalidate g++ tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfvalidate.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate (228/546) [LB] bin/transformconvert g++ tmp/cmd/transformconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert (229/546) [CC] tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/gui.cpp -o tmp/src/gui/gui.o (230/546) [MOC] tmp/src/gui/lighting_dock_moc.cpp moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp (231/546) [CC] tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o (232/546) [CC] tmp/src/gui/crosshair.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/crosshair.cpp -o tmp/src/gui/crosshair.o (233/546) [CC] tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o (234/546) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp (235/546) [CC] tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o (236/546) [CC] tmp/src/gui/dwi/render_frame.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o (237/546) [CC] tmp/src/gui/dialog/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o (238/546) [CC] tmp/src/gui/opengl/gl_core_3_3.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o (239/546) [CC] tmp/src/gui/opengl/gl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o (240/546) [CC] tmp/src/gui/color_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/color_button.cpp -o tmp/src/gui/color_button.o (241/546) [LB] bin/warp2metric g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric (242/546) [CC] tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o (243/546) [LB] bin/tcktransform g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/cmd/tcktransform.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform (244/546) [CC] tmp/src/gui/opengl/font.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o (245/546) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o (246/546) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/seeding/dynamic.h:207:49: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (247/546) [LB] bin/tckgen g++ tmp/cmd/tckgen.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/algorithms/iFOD1.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/exec_version.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/tracking/tractography.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen (248/546) [LB] bin/fixelconvert g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert (249/546) [CC] tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o (250/546) [CC] tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o (251/546) [CC] tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o (252/546) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o (253/546) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o (254/546) [CC] tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o (255/546) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o (256/546) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o (257/546) [CC] tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o (258/546) [CC] tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ src/dwi/tractography/SIFT/sifter.h:48:29: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/fixel_map.h:47:28: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (259/546) [CC] tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o (260/546) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o (261/546) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o (262/546) [CC] tmp/cmd/tensor2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ src/dwi/tractography/SIFT/sifter.h:48:29: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (263/546) [LB] bin/tcksift g++ tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/roi.o tmp/cmd/tcksift.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/exec_version.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift (264/546) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o (265/546) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o (266/546) [CC] tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o (267/546) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o (268/546) [CC] tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o (269/546) [CC] tmp/cmd/5ttcheck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o (270/546) [LB] bin/mrhistogram g++ tmp/cmd/mrhistogram.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram (271/546) [LB] bin/mrstats g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats (272/546) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o (273/546) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o (274/546) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o (275/546) [LB] bin/transformcalc g++ tmp/cmd/transformcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc (276/546) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o (277/546) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (278/546) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:535, from /usr/include/c++/13/cstring:42, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]’ at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:527:11, inlined from ‘void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]’ at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:517:65, inlined from ‘Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]’ at /usr/include/eigen3/Eigen/src/Core/DenseStorage.h:593:27, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘DWI2ADC::DWI2ADC(const DWI2ADC&)’ at cmd/dwi2adc.cpp:50:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/dwi2adc.cpp:109:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘*(__int128 unsigned*)result’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (279/546) [LB] bin/dwi2adc g++ tmp/cmd/dwi2adc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (280/546) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o (281/546) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o (282/546) [LB] bin/5ttcheck g++ tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/seeding/list.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck (283/546) [CC] tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (284/546) [LB] bin/connectomeedit g++ tmp/src/connectome/connectome.o tmp/src/connectome/enhance.o tmp/cmd/connectomeedit.o tmp/src/stats/tfce.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomeedit (285/546) [LB] bin/shview g++ tmp/src/gui/dialog/progress.o tmp/src/gui/shview/file_open.o tmp/src/gui/shview/render_window_moc.o tmp/src/gui/shview/icons.o tmp/src/gui/shview/render_window.o tmp/src/gui/opengl/shader.o tmp/src/gui/shapes/halfsphere.o tmp/cmd/shview.o tmp/src/gui/dialog/dialog.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/list.o tmp/src/gui/projection.o tmp/src/gui/lighting_dock.o tmp/src/gui/color_button_moc.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock_moc.o tmp/src/dwi/directions/set.o tmp/src/gui/crosshair.o tmp/src/gui/dwi/renderer.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/dialog/file.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/dwi/directions/predefined.o tmp/src/gui/opengl/gl.o tmp/src/gui/color_button.o tmp/src/gui/dialog/dicom.o tmp/src/gui/opengl/font.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Network.so /usr/lib/x86_64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/shview (286/546) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o (287/546) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o (288/546) [LB] bin/tck2fixel g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel (289/546) [LB] bin/dwi2tensor g++ tmp/cmd/dwi2tensor.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor (290/546) [CC] tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o (291/546) [CC] tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o (292/546) [LB] bin/label2mesh g++ tmp/src/surface/scalar.o tmp/cmd/label2mesh.o tmp/src/surface/mesh_multi.o tmp/src/surface/polygon.o tmp/src/connectome/lut.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh (293/546) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp (294/546) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o (295/546) [LB] bin/voxel2mesh g++ tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/cmd/voxel2mesh.o tmp/src/surface/polygon.o tmp/src/connectome/lut.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh (296/546) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (297/546) [LB] bin/warpinvert g++ tmp/cmd/warpinvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert (298/546) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp (299/546) [LB] bin/tsfsmooth g++ tmp/cmd/tsfsmooth.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth (300/546) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o (301/546) [LB] bin/tckresample g++ tmp/cmd/tckresample.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample (302/546) [CC] tmp/src/gui/mrview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/file_open.cpp -o tmp/src/gui/mrview/file_open.o (303/546) [CC] tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o (304/546) [CC] tmp/src/gui/mrview/tool/overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o (305/546) [LB] bin/mraverageheader g++ tmp/src/registration/multi_contrast.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/exec_version.o tmp/src/registration/transform/initialiser.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader (306/546) [CC] tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o (307/546) [MOC] tmp/src/gui/mrview/displayable_moc.cpp moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp (308/546) [CC] tmp/src/gui/mrview/displayable_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o (309/546) [LB] bin/mrcentroid g++ tmp/cmd/mrcentroid.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcentroid (310/546) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o (311/546) [LB] bin/mrcheckerboardmask g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask (312/546) [CC] tmp/src/gui/mrview/mode/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o (313/546) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp (314/546) [CC] tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o (315/546) [LB] bin/fod2fixel g++ tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/src/dwi/directions/predefined.o tmp/cmd/fod2fixel.o tmp/src/dwi/fmls.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel (316/546) [RCC] tmp/src/gui/mrview/icons.cpp rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp (317/546) [CC] tmp/src/gui/mrview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o (318/546) [CC] tmp/src/gui/mrview/mode/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o (319/546) [LB] bin/tensor2metric g++ tmp/cmd/tensor2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric (320/546) [CC] tmp/src/gui/mrview/tool/view.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o (321/546) [LB] bin/dwiextract g++ tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract (322/546) [CC] tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o (323/546) [LB] bin/tsfthreshold g++ tmp/cmd/tsfthreshold.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold (324/546) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o (325/546) [CC] tmp/src/gui/dialog/image_properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o (326/546) [CC] tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/mrview.cpp -o tmp/cmd/mrview.o (327/546) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (328/546) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (329/546) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o (330/546) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (331/546) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (332/546) [LB] bin/mrcalc g++ tmp/cmd/mrcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc (333/546) [CC] tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o (334/546) [CC] tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o (335/546) [CC] tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o (336/546) [LB] bin/mesh2voxel g++ tmp/src/surface/scalar.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/mesh_multi.o tmp/src/surface/polygon.o tmp/src/surface/algo/mesh2image.o tmp/src/connectome/lut.o tmp/src/surface/filter/base.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/cmd/mesh2voxel.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel (337/546) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o (338/546) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp moc src/gui/mrview/sync/syncmanager.h -o tmp/src/gui/mrview/sync/syncmanager_moc.cpp (339/546) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/syncmanager_moc.cpp -o tmp/src/gui/mrview/sync/syncmanager_moc.o (340/546) [CC] tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o (341/546) [CC] tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o (342/546) [LB] bin/dwi2mask g++ tmp/cmd/dwi2mask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask (343/546) [CC] tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o (344/546) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp moc src/gui/mrview/tool/transform.h -o tmp/src/gui/mrview/tool/transform_moc.cpp (345/546) [CC] tmp/src/gui/mrview/tool/transform_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/transform_moc.cpp -o tmp/src/gui/mrview/tool/transform_moc.o (346/546) [CC] tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o (347/546) [CC] tmp/src/gui/mrview/sync/client.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/client.cpp -o tmp/src/gui/mrview/sync/client.o (348/546) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp (349/546) [CC] tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o (350/546) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (351/546) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o (352/546) [LB] bin/mrtransform g++ tmp/src/dwi/directions/predefined.o tmp/cmd/mrtransform.o tmp/src/registration/multi_contrast.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform (353/546) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o (354/546) [CC] tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o (355/546) [LB] bin/mrfilter g++ tmp/cmd/mrfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter (356/546) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/interprocesscommunicator.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: In file included from /usr/include/eigen3/Eigen/Core:171, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: In static member function ‘static Eigen::internal::abs2_impl_default::RealScalar Eigen::internal::abs2_impl_default::run(const Scalar&) [with Scalar = float; bool IsComplex = false]’, inlined from ‘static Eigen::internal::abs2_impl::RealScalar Eigen::internal::abs2_impl::run(const Scalar&) [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:306:71, inlined from ‘typename Eigen::internal::abs2_retval::type>::type Eigen::numext::abs2(const Scalar&) [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:1288:48, inlined from ‘const Eigen::internal::scalar_abs2_op::result_type Eigen::internal::scalar_abs2_op::operator()(const Scalar&) const [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/functors/UnaryFunctors.h:95:97, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with UnaryOp = Eigen::internal::scalar_abs2_op; ArgType = const Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:22, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 2]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 1; int Length = 2]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0; int Length = 3]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘void Eigen::MatrixBase::normalize() [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:147:29, inlined from ‘void PLYWriter::computeNormals(const MR::DWI::Tractography::Streamline&, MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:411:23, inlined from ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:485:27: /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:284:13: warning: ‘normal.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 284 | return x*x; | ~^~ cmd/tckconvert.cpp: In member function ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’: cmd/tckconvert.cpp:396:50: note: ‘normal’ declared here 396 | Eigen::Vector3f sPrev, sNext, pt1, pt2, n, normal; | ^~~~~~ In static member function ‘static Eigen::internal::abs2_impl_default::RealScalar Eigen::internal::abs2_impl_default::run(const Scalar&) [with Scalar = float; bool IsComplex = false]’, inlined from ‘static Eigen::internal::abs2_impl::RealScalar Eigen::internal::abs2_impl::run(const Scalar&) [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:306:71, inlined from ‘typename Eigen::internal::abs2_retval::type>::type Eigen::numext::abs2(const Scalar&) [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:1288:48, inlined from ‘const Eigen::internal::scalar_abs2_op::result_type Eigen::internal::scalar_abs2_op::operator()(const Scalar&) const [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/functors/UnaryFunctors.h:95:97, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with UnaryOp = Eigen::internal::scalar_abs2_op; ArgType = const Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:22, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 1]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 1; int Length = 2]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0; int Length = 3]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘void Eigen::MatrixBase::normalize() [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:147:29, inlined from ‘void PLYWriter::computeNormals(const MR::DWI::Tractography::Streamline&, MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:411:23, inlined from ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:485:27: /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:284:13: warning: ‘normal.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[1]’ may be used uninitialized [-Wmaybe-uninitialized] 284 | return x*x; | ~^~ cmd/tckconvert.cpp: In member function ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’: cmd/tckconvert.cpp:396:50: note: ‘normal’ declared here 396 | Eigen::Vector3f sPrev, sNext, pt1, pt2, n, normal; | ^~~~~~ In static member function ‘static Eigen::internal::abs2_impl_default::RealScalar Eigen::internal::abs2_impl_default::run(const Scalar&) [with Scalar = float; bool IsComplex = false]’, inlined from ‘static Eigen::internal::abs2_impl::RealScalar Eigen::internal::abs2_impl::run(const Scalar&) [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:306:71, inlined from ‘typename Eigen::internal::abs2_retval::type>::type Eigen::numext::abs2(const Scalar&) [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:1288:48, inlined from ‘const Eigen::internal::scalar_abs2_op::result_type Eigen::internal::scalar_abs2_op::operator()(const Scalar&) const [with Scalar = float]’ at /usr/include/eigen3/Eigen/src/Core/functors/UnaryFunctors.h:95:97, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with UnaryOp = Eigen::internal::scalar_abs2_op; ArgType = const Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:22, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0; int Length = 3]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘void Eigen::MatrixBase::normalize() [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:147:29, inlined from ‘void PLYWriter::computeNormals(const MR::DWI::Tractography::Streamline&, MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:411:23, inlined from ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:485:27: /usr/include/eigen3/Eigen/src/Core/MathFunctions.h:284:13: warning: ‘normal.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[0]’ may be used uninitialized [-Wmaybe-uninitialized] 284 | return x*x; | ~^~ cmd/tckconvert.cpp: In member function ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’: cmd/tckconvert.cpp:396:50: note: ‘normal’ declared here 396 | Eigen::Vector3f sPrev, sNext, pt1, pt2, n, normal; | ^~~~~~ (357/546) [LB] bin/tckconvert g++ tmp/cmd/tckconvert.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert (358/546) [CC] tmp/src/gui/mrview/tool/transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/transform.cpp -o tmp/src/gui/mrview/tool/transform.o (359/546) [MOC] tmp/src/gui/mrview/window_moc.cpp moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp (360/546) [CC] tmp/src/gui/mrview/window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o (361/546) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp (362/546) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o (363/546) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (364/546) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o (365/546) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o (366/546) [LB] bin/mrmetric g++ tmp/src/registration/multi_contrast.o tmp/src/exec_version.o tmp/cmd/mrmetric.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric (367/546) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o (368/546) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o (369/546) [LB] bin/mrdump g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump (370/546) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp (371/546) [CC] tmp/src/gui/mrview/adjust_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o (372/546) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp (373/546) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o (374/546) [CC] tmp/src/gui/mrview/sync/localsocketreader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/localsocketreader.cpp -o tmp/src/gui/mrview/sync/localsocketreader.o (375/546) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o (376/546) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o (377/546) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o (378/546) [CC] tmp/src/gui/mrview/mode/slice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o (379/546) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (380/546) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o (381/546) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp (382/546) [CC] tmp/src/gui/mrview/spin_box_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o (383/546) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o (384/546) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o (385/546) [CC] tmp/src/gui/shapes/cube.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o (386/546) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o (387/546) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (388/546) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (389/546) [CC] tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o (390/546) [CC] tmp/src/gui/mrview/tool/odf/preview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o (391/546) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp moc src/gui/mrview/sync/interprocesscommunicator.h -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (392/546) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (393/546) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp moc src/gui/mrview/sync/localsocketreader.h -o tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (394/546) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/localsocketreader_moc.cpp -o tmp/src/gui/mrview/sync/localsocketreader_moc.o (395/546) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o (396/546) [CC] tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o (397/546) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o (398/546) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp (399/546) [CC] tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o (400/546) [CC] tmp/src/gui/mrview/colourmap_menu.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_menu.cpp -o tmp/src/gui/mrview/colourmap_menu.o (401/546) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp (402/546) [CC] tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o (403/546) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (404/546) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o (405/546) [CC] tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o (406/546) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp (407/546) [CC] tmp/src/gui/mrview/tool/view_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o (408/546) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (409/546) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (410/546) [CC] tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o (411/546) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o (412/546) [CC] tmp/src/gui/mrview/sync/syncmanager.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/syncmanager.cpp -o tmp/src/gui/mrview/sync/syncmanager.o (413/546) [CC] tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o (414/546) [CC] tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/cursor.cpp -o tmp/src/gui/cursor.o (415/546) [CC] tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o (416/546) [CC] tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o (417/546) [CC] tmp/src/gui/dialog/opengl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o (418/546) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o (419/546) [CC] tmp/src/gui/mrview/sync/processlock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/processlock.cpp -o tmp/src/gui/mrview/sync/processlock.o (420/546) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp (421/546) [CC] tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o (422/546) [CC] tmp/src/gui/mrview/colourbars.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourbars.cpp -o tmp/src/gui/mrview/colourbars.o (423/546) [CC] tmp/src/gui/mrview/tool/connectome/selection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o (424/546) [CC] tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o (425/546) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o (426/546) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o (427/546) [CC] tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o (428/546) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o (429/546) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o (430/546) [CC] tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o (431/546) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o (432/546) [CC] tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o (433/546) [CC] tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o (434/546) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o (435/546) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o (436/546) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/msmt_csd.cpp -o tmp/src/dwi/sdeconv/msmt_csd.o (437/546) [CC] tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o (438/546) [CC] tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o (439/546) [CC] tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o (440/546) [LB] bin/dcminfo g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo (441/546) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o (442/546) [CC] tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o (443/546) [CC] tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o (444/546) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o (445/546) [LB] bin/dirsplit g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit (446/546) [CC] tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o (447/546) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o (448/546) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o (449/546) [LB] bin/mrdegibbs g++ tmp/cmd/mrdegibbs.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs (450/546) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o (451/546) [CC] tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o (452/546) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o (453/546) [LB] bin/tsfinfo g++ tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo (454/546) [LB] bin/tsfmult g++ tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult (455/546) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o (456/546) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o (457/546) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o (458/546) [LB] bin/sh2response g++ tmp/cmd/sh2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response (459/546) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (460/546) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o (461/546) [CC] tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o (462/546) [LB] bin/tckmap g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap (463/546) [LB] bin/fixel2peaks g++ tmp/cmd/fixel2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2peaks (464/546) [CC] tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o (465/546) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o (466/546) [LB] bin/meshconvert g++ tmp/src/surface/scalar.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/mesh_multi.o tmp/src/surface/polygon.o tmp/src/connectome/lut.o tmp/src/surface/filter/base.o tmp/cmd/meshconvert.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert (467/546) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (468/546) [LB] bin/sh2peaks g++ tmp/cmd/sh2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks (469/546) [CC] tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o (470/546) [LB] bin/fixelfilter g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/fixel/matrix.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/fixel/filter/smooth.o tmp/cmd/fixelfilter.o tmp/src/fixel/filter/connect.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelfilter (471/546) [LB] bin/dirstat g++ tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat (472/546) [CC] tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o (473/546) [LB] bin/mrview g++ tmp/src/surface/scalar.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/file_open.o tmp/src/dwi/tractography/rng.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/dialog.o tmp/src/gui/mrview/tool/overlay.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/surface/mesh.o tmp/src/gui/projection.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/mode/base.o tmp/src/gui/mrview/tool/view.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/volume.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/dialog/image_properties.o tmp/cmd/mrview.o tmp/src/exec_version.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/sync/syncmanager_moc.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/surface/freesurfer.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/transform_moc.o tmp/src/gui/crosshair.o tmp/src/gui/mrview/window.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/sync/client.o tmp/src/surface/polygon.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/sync/interprocesscommunicator.o tmp/src/gui/mrview/tool/transform.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/sync/localsocketreader.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/gui/mrview/mode/slice.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/gui.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/shapes/cube.o tmp/src/gui/opengl/gl.o tmp/src/gui/color_button.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o tmp/src/gui/mrview/sync/localsocketreader_moc.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/gui/mrview/colourmap_menu.o tmp/src/colourmap.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/adjust_button.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/dialog/list.o tmp/src/gui/lighting_dock.o tmp/src/dwi/tractography/properties.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/mrview/sync/syncmanager.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/dwi/renderer.o tmp/src/gui/cursor.o tmp/src/gui/mrview/combo_box_error.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/dialog/opengl.o tmp/src/gui/dialog/file.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/dwi/directions/predefined.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/sync/processlock.o tmp/src/dwi/tractography/roi.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/colourbars.o tmp/src/gui/mrview/tool/connectome/selection.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Network.so /usr/lib/x86_64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/mrview (474/546) [CC] tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (475/546) [LB] bin/connectomestats g++ tmp/src/connectome/connectome.o tmp/cmd/connectomestats.o tmp/src/connectome/enhance.o tmp/src/stats/permtest.o tmp/src/stats/tfce.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats (476/546) [CC] tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o (477/546) [LB] bin/maskdump g++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump (478/546) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o (479/546) [CC] tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o (480/546) [LB] bin/meshfilter g++ tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/polygon.o tmp/src/connectome/lut.o tmp/src/surface/filter/base.o tmp/cmd/meshfilter.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/smooth.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter (481/546) [CC] tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o (482/546) [CC] tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o (483/546) [LB] bin/dcmedit g++ tmp/cmd/dcmedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit (484/546) [CC] tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o (485/546) [LB] bin/dirorder g++ tmp/src/dwi/directions/file.o tmp/cmd/dirorder.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder (486/546) [LB] bin/sh2power g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power (487/546) [LB] bin/shbasis g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis (488/546) [CC] tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o (489/546) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o (490/546) [LB] bin/voxel2fixel g++ tmp/cmd/voxel2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel (491/546) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o (492/546) [CC] tmp/cmd/fixel2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o (493/546) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o (494/546) [LB] bin/peaks2amp g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp (495/546) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o (496/546) [LB] bin/fod2dec g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec (497/546) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o (498/546) [LB] bin/mrcat g++ tmp/cmd/mrcat.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat (499/546) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (500/546) [LB] bin/mrclusterstats g++ tmp/cmd/mrclusterstats.o tmp/src/stats/permtest.o tmp/src/stats/cluster.o tmp/src/stats/tfce.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats (501/546) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o (502/546) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o (503/546) [LB] bin/mrhistmatch g++ tmp/cmd/mrhistmatch.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch (504/546) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o (505/546) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o (506/546) [LB] bin/dirmerge g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirmerge.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge (507/546) [CC] tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o (508/546) [LB] bin/mrinfo g++ tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo (509/546) [CC] tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o (510/546) [CC] tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (511/546) [CC] tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (512/546) [CC] tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o (513/546) [CC] tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o (514/546) [LB] bin/tckedit g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/editing/receiver.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (515/546) [CC] tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o (516/546) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o (517/546) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o (518/546) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o (519/546) [LB] bin/fixelcorrespondence g++ tmp/src/exec_version.o tmp/cmd/fixelcorrespondence.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence (520/546) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (521/546) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o (522/546) [LB] bin/fixel2sh g++ tmp/src/exec_version.o tmp/cmd/fixel2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh (523/546) [CC] tmp/cmd/transformcompose.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o (524/546) [CC] tmp/cmd/labelstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelstats.cpp -o tmp/cmd/labelstats.o (525/546) [CC] tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o (526/546) [CC] tmp/cmd/fixelconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o (527/546) [LB] bin/mtnormalise g++ tmp/cmd/mtnormalise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise (528/546) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o (529/546) [LB] bin/maskfilter g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter (530/546) [LB] bin/dwi2fod g++ tmp/src/dwi/directions/predefined.o tmp/src/dwi/sdeconv/csd.o tmp/src/dwi/sdeconv/msmt_csd.o tmp/cmd/dwi2fod.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘BoundsCheck::BoundsCheck(const BoundsCheck&)’ at cmd/warpcorrect.cpp:53:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ (531/546) [LB] bin/amp2response (532/546) [LB] bin/warpcorrect g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect g++ tmp/cmd/amp2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response (533/546) [LB] bin/dirflip g++ tmp/cmd/dirflip.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip (534/546) [LB] bin/tckdfc g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc (535/546) [LB] bin/labelstats g++ tmp/src/connectome/connectome.o tmp/cmd/labelstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelstats (536/546) [LB] bin/fixelconnectivity g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/file_base.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/fixelconnectivity.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconnectivity g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:123:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (537/546) [LB] bin/connectome2tck g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/seeding/list.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck (538/546) [LB] bin/transformcompose g++ tmp/cmd/transformcompose.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/fixel_map.h:47:28: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (539/546) [LB] bin/tcksift2 g++ tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/cmd/tcksift2.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/fmls.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/fixel_td_map.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 (540/546) [LB] bin/tcksample g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/cmd/tcksample.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample (541/546) [LB] bin/tckglobal g++ tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/tractography/GT/gt.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/roi.o tmp/cmd/tckglobal.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal (542/546) [LB] bin/mrconvert g++ tmp/cmd/mrconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert (543/546) [LB] bin/fixel2voxel g++ tmp/src/dwi/tractography/file_base.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel (544/546) [LB] bin/mrmath g++ tmp/cmd/mrmath.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath (545/546) [LB] bin/dwidenoise g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise (546/546) [LB] bin/mrregister g++ tmp/src/registration/multi_contrast.o tmp/src/registration/nonlinear.o tmp/src/registration/transform/affine.o tmp/cmd/mrregister.o tmp/src/registration/linear.o tmp/src/registration/transform/initialiser.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_install # Remove __pycache__ dirs that were created in build time tests find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' cp debian/mrtrix3.links.in debian/mrtrix3.links : # Generate symlinks for all the mr* commands for f in debian/mrtrix3/usr/lib/mrtrix3/bin/*; do \ bn=$(basename $f); \ if [ "$bn" = "dirsplit" ]; then \ continue; \ fi; \ echo "usr/lib/mrtrix3/bin/$bn usr/bin/$bn" >> debian/mrtrix3.links; \ echo "/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/$bn.1.gz" >> debian/mrtrix3.links; \ done echo "/usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix3.links echo "/usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix3.links dh_link make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_compress -X.html make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_shlibdeps -l /build/reproducible-path/mrtrix3-3.0.4/lib make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mrtrix3' in '../mrtrix3_3.0.4-1+b1_amd64.deb'. dpkg-deb: building package 'mrtrix3-dbgsym' in '../mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../mrtrix3_3.0.4-1+b1_amd64.buildinfo dpkg-genchanges --build=any -O../mrtrix3_3.0.4-1+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-06-15T03:50:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 15 Jun 2025 03:50:31 +0000 | +------------------------------------------------------------------------------+ mrtrix3_3.0.4-1+b1_amd64.changes: --------------------------------- Format: 1.8 Date: Sat, 16 Mar 2024 15:56:16 +0000 Source: mrtrix3 (3.0.4-1) Binary: mrtrix3 mrtrix3-dbgsym Binary-Only: yes Architecture: amd64 Version: 3.0.4-1+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: all / amd64 / i386 Build Daemon (x86-conova-01) Description: mrtrix3 - diffusion-weighted MRI white matter tractography Changes: mrtrix3 (3.0.4-1+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for time_t Checksums-Sha1: b63e9101a6d9c0bcdfbca95c7c1b85b0cbb07d8e 471093504 mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb 1edacedb0b8c5d930b85438a4b5cdc9ffcfa9bd6 17024 mrtrix3_3.0.4-1+b1_amd64.buildinfo af05f3cffe262cc03c07550a6b7d90b01e151024 9980212 mrtrix3_3.0.4-1+b1_amd64.deb Checksums-Sha256: 0b0ba7908886c43774ffbd7e42da4c1b40c56f514c34fcfb7ad2570cc920a422 471093504 mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb 6efd40863de50883ef5a1799e82d5c62059ed38c4c4ded2034b5a44a82a8e17f 17024 mrtrix3_3.0.4-1+b1_amd64.buildinfo 39c36c06bb7b36e25492b0135ba2d91fa827070a358010ba828125a6c88ff5db 9980212 mrtrix3_3.0.4-1+b1_amd64.deb Files: 9dd9930520c04d3eb7a19569a373141f 471093504 debug optional mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb 941eca5415273df2fde3c3bc54790ffd 17024 science optional mrtrix3_3.0.4-1+b1_amd64.buildinfo 42239da3229bb5a64de7b5cdc53d0320 9980212 science optional mrtrix3_3.0.4-1+b1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 15 Jun 2025 03:50:32 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mrtrix3 (3.0.4-1) Binary: mrtrix3 mrtrix3-dbgsym Architecture: amd64 Version: 3.0.4-1+b1 Binary-Only-Changes: mrtrix3 (3.0.4-1+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for time_t . -- all / amd64 / i386 Build Daemon (x86-conova-01) Sat, 16 Mar 2024 15:56:16 +0000 Checksums-Md5: 9dd9930520c04d3eb7a19569a373141f 471093504 mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb 42239da3229bb5a64de7b5cdc53d0320 9980212 mrtrix3_3.0.4-1+b1_amd64.deb Checksums-Sha1: b63e9101a6d9c0bcdfbca95c7c1b85b0cbb07d8e 471093504 mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb af05f3cffe262cc03c07550a6b7d90b01e151024 9980212 mrtrix3_3.0.4-1+b1_amd64.deb Checksums-Sha256: 0b0ba7908886c43774ffbd7e42da4c1b40c56f514c34fcfb7ad2570cc920a422 471093504 mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb 39c36c06bb7b36e25492b0135ba2d91fa827070a358010ba828125a6c88ff5db 9980212 mrtrix3_3.0.4-1+b1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 15 Jun 2025 03:50:20 +0000 Build-Path: /build/reproducible-path/mrtrix3-3.0.4 Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: adduser (= 3.137), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), bc (= 1.07.1-3+b2), binutils (= 2.42-3), binutils-common (= 2.42-3), binutils-x86-64-linux-gnu (= 2.42-3), bsdextrautils (= 2.39.3-10), bsdutils (= 1:2.39.3-10), build-essential (= 12.10), bzip2 (= 1.0.8-5+b2), coreutils (= 9.4-3+b2), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-18), cpp-13-x86-64-linux-gnu (= 13.2.0-18), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.14.1), debianutils (= 5.17), dh-autoreconf (= 20), dh-python (= 6.20240310), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), fontconfig (= 2.15.0-1.1), fontconfig-config (= 2.15.0-1.1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-18), g++-13-x86-64-linux-gnu (= 13.2.0-18), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-18), gcc-13-base (= 13.2.0-18), gcc-13-x86-64-linux-gnu (= 13.2.0-18), gcc-14-base (= 14-20240303-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), gfortran (= 4:13.2.0-7), gfortran-13 (= 13.2.0-18), gfortran-13-x86-64-linux-gnu (= 13.2.0-18), gfortran-x86-64-linux-gnu (= 4:13.2.0-7), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1), hdf5-helpers (= 1.10.10+repack-3.1), hicolor-icon-theme (= 0.17-2), hostname (= 3.23+nmu2), ibverbs-providers (= 50.0-2), imagemagick (= 8:6.9.12.98+dfsg1-5.2), imagemagick-6-common (= 8:6.9.12.98+dfsg1-5.2), imagemagick-6.q16 (= 8:6.9.12.98+dfsg1-5.2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libaec-dev (= 1.1.2-1), libaec0 (= 1.1.2-1), libamd-comgr2 (= 6.0+git20231212.4510c28+dfsg-3), libamd3 (= 1:7.6.1+dfsg-1), libamdhip64-5 (= 5.7.1-1), libarchive-zip-perl (= 1.68-1), libarpack2t64 (= 3.9.1-1.1), libasan8 (= 14-20240303-1), libasound2-data (= 1.2.11-1), libasound2t64 (= 1.2.11-1), libatomic1 (= 14-20240303-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libavahi-client3 (= 0.8-13+b2), libavahi-common-data (= 0.8-13+b2), libavahi-common3 (= 0.8-13+b2), libbinutils (= 2.42-3), libblas-dev (= 3.12.0-3), libblas3 (= 3.12.0-3), libblkid1 (= 2.39.3-10), libbrotli1 (= 1.1.0-2+b3), libbsd0 (= 0.12.1-1), libbtf2 (= 1:7.6.1+dfsg-1), libbz2-1.0 (= 1.0.8-5+b2), libc-bin (= 2.37-15.1), libc-dev-bin (= 2.37-15.1), libc6 (= 2.37-15.1), libc6-dev (= 2.37-15.1), libcamd3 (= 1:7.6.1+dfsg-1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcbor0.10 (= 0.10.2-1.2), libcc1-0 (= 14-20240303-1), libccolamd3 (= 1:7.6.1+dfsg-1), libcholmod5 (= 1:7.6.1+dfsg-1), libcolamd3 (= 1:7.6.1+dfsg-1), libcom-err2 (= 1.47.0-2.4), libcombblas2.0.0 (= 2.0.0-3+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-3), libctf0 (= 2.42-3), libcups2t64 (= 2.4.7-1.2+b1), libcurl3t64-gnutls (= 8.6.0-3.2), libcurl4-openssl-dev (= 8.6.0-3.2), libcurl4t64 (= 8.6.0-3.2), libcxsparse4 (= 1:7.6.1+dfsg-1), libdav1d7 (= 1.4.0-1), libdb5.3t64 (= 5.3.28+dfsg2-5+b1), libdbus-1-3 (= 1.14.10-4+b1), libde265-0 (= 1.0.15-1+b1), libdebconfclient0 (= 0.271+b2), libdebhelper-perl (= 13.14.1), libdeflate-dev (= 1.19-1), libdeflate0 (= 1.19-1), libdouble-conversion3 (= 3.3.0-1+b1), libdpkg-perl (= 1.22.6), libdrm-amdgpu1 (= 2.4.120-2), libdrm-common (= 2.4.120-2), libdrm-intel1 (= 2.4.120-2), libdrm-nouveau2 (= 2.4.120-2), libdrm-radeon1 (= 2.4.120-2), libdrm2 (= 2.4.120-2), libedit2 (= 3.1-20230828-1), libegl-dev (= 1.7.0-1), libegl-mesa0 (= 24.0.3-1), libegl1 (= 1.7.0-1), libeigen3-dev (= 3.4.0-4), libelf1t64 (= 0.191-1), libevdev2 (= 1.13.1+dfsg-1), libevent-core-2.1-7t64 (= 2.1.12-stable-8.1+b1), libevent-pthreads-2.1-7t64 (= 2.1.12-stable-8.1+b1), libexpat1 (= 2.6.2-1), libfabric1 (= 1.17.0-3), libffi8 (= 3.4.6-1), libfftw3-bin (= 3.3.10-1+b1), libfftw3-dev (= 3.3.10-1+b1), libfftw3-double3 (= 3.3.10-1+b1), libfftw3-long3 (= 3.3.10-1+b1), libfftw3-mpi3 (= 3.3.10-1+b1), libfftw3-quad3 (= 3.3.10-1+b1), libfftw3-single3 (= 3.3.10-1+b1), libfido2-1 (= 1.14.0-1+b1), libfile-stripnondeterminism-perl (= 1.13.1-1), libflac12t64 (= 1.4.3+ds-2.1), libfltk-gl1.3t64 (= 1.3.8-6.1), libfltk1.3t64 (= 1.3.8-6.1), libfontconfig1 (= 2.15.0-1.1), libfreetype6 (= 2.13.2+dfsg-1+b2), libgbm1 (= 24.0.3-1), libgcc-13-dev (= 13.2.0-18), libgcc-s1 (= 14-20240303-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1), libgdbm6t64 (= 1.23-5.1), libgfortran-13-dev (= 13.2.0-18), libgfortran5 (= 14-20240303-1), libgl-dev (= 1.7.0-1), libgl1 (= 1.7.0-1), libgl1-mesa-dri (= 24.0.3-1), libgl2ps1.4 (= 1.4.2+dfsg1-2), libglapi-mesa (= 24.0.3-1), libglib2.0-0t64 (= 2.78.4-5), libglpk40 (= 5.0-1+b1), libglu1-mesa (= 9.0.2-1.1), libglu1-mesa-dev (= 9.0.2-1.1), libglvnd0 (= 1.7.0-1), libglx-dev (= 1.7.0-1), libglx-mesa0 (= 24.0.3-1), libglx0 (= 1.7.0-1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.3-1.1), libgomp1 (= 14-20240303-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-3), libgraphicsmagick++-q16-12t64 (= 1.4+really1.3.42-1.1+b1), libgraphicsmagick-q16-3t64 (= 1.4+really1.3.42-1.1+b1), libgraphite2-3 (= 1.3.14-2), libgsl-dev (= 2.7.1+dfsg-6+b1), libgsl27 (= 2.7.1+dfsg-6+b1), libgslcblas0 (= 2.7.1+dfsg-6+b1), libgssapi-krb5-2 (= 1.20.1-6), libgudev-1.0-0 (= 238-3+b1), libharfbuzz0b (= 8.3.0-2+b1), libhdf5-103-1t64 (= 1.10.10+repack-3.1), libhdf5-cpp-103-1t64 (= 1.10.10+repack-3.1), libhdf5-dev (= 1.10.10+repack-3.1), libhdf5-fortran-102t64 (= 1.10.10+repack-3.1), libhdf5-hl-100t64 (= 1.10.10+repack-3.1), libhdf5-hl-cpp-100t64 (= 1.10.10+repack-3.1), libhdf5-hl-fortran-100t64 (= 1.10.10+repack-3.1), libhdf5-openmpi-103-1 (= 1.10.10+repack-3+b1), libheif-plugin-dav1d (= 1.17.6-1+b2), libheif-plugin-libde265 (= 1.17.6-1+b2), libheif1 (= 1.17.6-1+b2), libhogweed6t64 (= 3.9.1-2.2), libhsa-runtime64-1 (= 5.7.1-1), libhsakmt1 (= 5.7.0-1), libhwasan0 (= 14-20240303-1), libhwloc-plugins (= 2.10.0-1+b1), libhwloc15 (= 2.10.0-1+b1), libhwy1t64 (= 1.0.7-8.1), libhypre-2.28.0 (= 2.28.0-8), libibverbs1 (= 50.0-2), libice6 (= 2:1.0.10-1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libinput-bin (= 1.25.0-1+b1), libinput10 (= 1.25.0-1+b1), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240303-1), libjack-jackd2-0 (= 1.9.21~dfsg-3+b3), libjansson4 (= 2.14-2+b2), libjbig-dev (= 2.1-6.1+b1), libjbig0 (= 2.1-6.1+b1), libjpeg-dev (= 1:2.1.5-2+b2), libjpeg62-turbo (= 1:2.1.5-2+b2), libjpeg62-turbo-dev (= 1:2.1.5-2+b2), libjxl0.7 (= 0.7.0-10.2+b2), libk5crypto3 (= 1.20.1-6), libkeyutils1 (= 1.6.3-3), libklu2 (= 1:7.6.1+dfsg-1), libkrb5-3 (= 1.20.1-6), libkrb5support0 (= 1.20.1-6), liblapack-dev (= 3.12.0-3), liblapack3 (= 3.12.0-3), liblcms2-2 (= 2.14-2+b1), libldap-2.5-0 (= 2.5.16+dfsg-2), liblerc-dev (= 4.0.0+ds-4+b1), liblerc4 (= 4.0.0+ds-4+b1), libllvm17t64 (= 1:17.0.6-9), liblqr-1-0 (= 0.4.2-2.1+b1), liblsan0 (= 14-20240303-1), libltdl7 (= 2.4.7-7), liblz4-1 (= 1.9.4-1+b2), liblzma-dev (= 5.6.0-0.2), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmagickcore-6.q16-7t64 (= 8:6.9.12.98+dfsg1-5.2), libmagickwand-6.q16-7t64 (= 8:6.9.12.98+dfsg1-5.2), libmd0 (= 1.1.0-2), libmd4c0 (= 0.4.8-1+b1), libmetis5 (= 5.1.0.dfsg-7+b1), libmount1 (= 2.39.3-10), libmp3lame0 (= 3.100-6+b2), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libmpg123-0 (= 1.32.5-1+b1), libmtdev1t64 (= 1.1.6-1.1), libmumps-5.6 (= 5.6.2-2+b1), libmunge2 (= 0.5.15-3+b1), libncurses-dev (= 6.4+20240113-1), libncurses6 (= 6.4+20240113-1), libncursesw6 (= 6.4+20240113-1), libnettle8t64 (= 3.9.1-2.2), libnghttp2-14 (= 1.59.0-1+b1), libnl-3-200 (= 3.7.0-0.3), libnl-route-3-200 (= 3.7.0-0.3), libnuma1 (= 2.0.18-1), libogg0 (= 1.3.5-3), libopengl-dev (= 1.7.0-1), libopengl0 (= 1.7.0-1), libopenjp2-7 (= 2.5.0-2+b3), libopenmpi3t64 (= 4.1.6-7), libopus0 (= 1.4-1+b1), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-6), libpam-modules-bin (= 1.5.3-6), libpam-runtime (= 1.5.3-6), libpam0g (= 1.5.3-6), libpciaccess0 (= 0.17-3), libpcre2-16-0 (= 10.42-4+b1), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-3.2), libpetsc-real3.19 (= 3.19.6+dfsg1-2), libpipeline1 (= 1.5.7-1+b2), libpkgconf3 (= 1.8.1-1+b2), libpmix2t64 (= 5.0.1-4.1), libpng16-16t64 (= 1.6.43-3), libportaudio2 (= 19.6.0-1.2+b2), libpsl5t64 (= 0.21.2-1.1), libpsm-infinipath1 (= 3.3+20.604758e7-6.3), libpsm2-2 (= 11.2.185-2), libpthread-stubs0-dev (= 0.4-1), libptscotch-7.0 (= 7.0.4-1+b1), libpython3-stdlib (= 3.11.8-1), libpython3.11-minimal (= 3.11.8-3), libpython3.11-stdlib (= 3.11.8-3), libqhull-r8.0 (= 2020.2-6+b1), libqrupdate1 (= 1.1.2-4+b1), libqscintilla2-qt5-15 (= 2.14.1+dfsg-1+b2), libqscintilla2-qt5-l10n (= 2.14.1+dfsg-1), libqt5concurrent5t64 (= 5.15.10+dfsg-7.2+b1), libqt5core5t64 (= 5.15.10+dfsg-7.2+b1), libqt5dbus5t64 (= 5.15.10+dfsg-7.2+b1), libqt5gui5t64 (= 5.15.10+dfsg-7.2+b1), libqt5help5 (= 5.15.10-6+b1), libqt5network5t64 (= 5.15.10+dfsg-7.2+b1), libqt5opengl5-dev (= 5.15.10+dfsg-7.2+b1), libqt5opengl5t64 (= 5.15.10+dfsg-7.2+b1), libqt5printsupport5t64 (= 5.15.10+dfsg-7.2+b1), libqt5sql5t64 (= 5.15.10+dfsg-7.2+b1), libqt5svg5 (= 5.15.10-2+b2), libqt5svg5-dev (= 5.15.10-2+b2), libqt5test5t64 (= 5.15.10+dfsg-7.2+b1), libqt5widgets5t64 (= 5.15.10+dfsg-7.2+b1), libqt5xml5t64 (= 5.15.10+dfsg-7.2+b1), libquadmath0 (= 14-20240303-1), libraw23t64 (= 0.21.2-2.1), librdmacm1t64 (= 50.0-2), libreadline-dev (= 8.2-3.1), libreadline8t64 (= 8.2-3.1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b3), libsamplerate0 (= 0.2.2-4), libsasl2-2 (= 2.1.28+dfsg1-4+b2), libsasl2-modules-db (= 2.1.28+dfsg1-4+b2), libscalapack-openmpi2.2 (= 2.2.1-3+b1), libscotch-7.0 (= 7.0.4-1+b1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1+b2), libsensors-config (= 1:3.6.0-9), libsensors5 (= 1:3.6.0-9), libsepol2 (= 3.5-2), libsframe1 (= 2.42-3), libsharpyuv-dev (= 1.3.2-0.4+b1), libsharpyuv0 (= 1.3.2-0.4+b1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.39.3-10), libsndfile1 (= 1.2.2-1+b1), libspqr4 (= 1:7.6.1+dfsg-1), libsqlite3-0 (= 3.45.2-1), libssh2-1t64 (= 1.11.0-4.1+b1), libssl-dev (= 3.1.5-1.1), libssl3t64 (= 3.1.5-1.1), libstdc++-13-dev (= 13.2.0-18), libstdc++6 (= 14-20240303-1), libsub-override-perl (= 0.10-1), libsuitesparseconfig7 (= 1:7.6.1+dfsg-1), libsundials-ida6 (= 6.4.1+dfsg1-3+b3), libsundials-nvecparallel-petsc6 (= 6.4.1+dfsg1-3+b3), libsundials-sunlinsol3 (= 6.4.1+dfsg1-3+b3), libsundials-sunmatrix4 (= 6.4.1+dfsg1-3+b3), libsuperlu-dist8 (= 8.2.1+dfsg1-1), libsuperlu6 (= 6.0.1+dfsg1-1+b1), libsystemd0 (= 255.4-1+b1), libsz2 (= 1.1.2-1), libtasn1-6 (= 4.19.0-3+b2), libtext-unidecode-perl (= 1.30-3), libtiff-dev (= 4.5.1+git230720-4), libtiff6 (= 4.5.1+git230720-4), libtiffxx6 (= 4.5.1+git230720-4), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtrilinos-amesos-13.2 (= 13.2.0-5+b1), libtrilinos-aztecoo-13.2 (= 13.2.0-5+b1), libtrilinos-epetra-13.2 (= 13.2.0-5+b1), libtrilinos-epetraext-13.2 (= 13.2.0-5+b1), libtrilinos-galeri-13.2 (= 13.2.0-5+b1), libtrilinos-ifpack-13.2 (= 13.2.0-5+b1), libtrilinos-kokkos-13.2 (= 13.2.0-5+b1), libtrilinos-ml-13.2 (= 13.2.0-5+b1), libtrilinos-teuchos-13.2 (= 13.2.0-5+b1), libtrilinos-trilinosss-13.2 (= 13.2.0-5+b1), libtrilinos-triutils-13.2 (= 13.2.0-5+b1), libtrilinos-zoltan-13.2 (= 13.2.0-5+b1), libtsan2 (= 14-20240303-1), libubsan1 (= 14-20240303-1), libuchardet0 (= 0.0.8-1+b1), libucx0 (= 1.16.0+ds-4), libudev1 (= 255.4-1+b1), libumfpack6 (= 1:7.6.1+dfsg-1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-10), libvorbis0a (= 1.3.7-2), libvorbisenc2 (= 1.3.7-2), libvulkan-dev (= 1.3.275.0-1), libvulkan1 (= 1.3.275.0-1), libwacom-common (= 2.10.0-1), libwacom9 (= 2.10.0-1+b1), libwayland-client0 (= 1.22.0-2.1+b1), libwayland-server0 (= 1.22.0-2.1+b1), libwebp-dev (= 1.3.2-0.4+b1), libwebp7 (= 1.3.2-0.4+b1), libwebpdecoder3 (= 1.3.2-0.4+b1), libwebpdemux2 (= 1.3.2-0.4+b1), libwebpmux3 (= 1.3.2-0.4+b1), libwmflite-0.2-7 (= 0.2.13-1.1+b2), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libx11-dev (= 2:1.8.7-1), libx11-xcb1 (= 2:1.8.7-1), libxau-dev (= 1:1.0.9-1), libxau6 (= 1:1.0.9-1), libxcb-dri2-0 (= 1.15-1), libxcb-dri3-0 (= 1.15-1), libxcb-glx0 (= 1.15-1), libxcb-icccm4 (= 0.4.1-1.1+b1), libxcb-image0 (= 0.4.0-2+b1), libxcb-keysyms1 (= 0.4.0-1+b2), libxcb-present0 (= 1.15-1), libxcb-randr0 (= 1.15-1), libxcb-render-util0 (= 0.3.9-1+b1), libxcb-render0 (= 1.15-1), libxcb-shape0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb-sync1 (= 1.15-1), libxcb-util1 (= 0.4.0-1+b1), libxcb-xfixes0 (= 1.15-1), libxcb-xinerama0 (= 1.15-1), libxcb-xinput0 (= 1.15-1), libxcb-xkb1 (= 1.15-1), libxcb1 (= 1.15-1), libxcb1-dev (= 1.15-1), libxcursor1 (= 1:1.2.1-1), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.4-1+b1), libxext6 (= 2:1.3.4-1+b1), libxfixes3 (= 1:6.0.0-2), libxft2 (= 2.3.6-1+b1), libxinerama1 (= 2:1.1.4-3), libxkbcommon-x11-0 (= 1.6.0-1), libxkbcommon0 (= 1.6.0-1), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-1+b3), libxml-namespacesupport-perl (= 1.12-2), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-3), libxml2 (= 2.9.14+dfsg-1.3+b2), libxnvctrl0 (= 525.147.05-1), libxrender1 (= 1:0.9.10-1.1), libxshmfence1 (= 1.3-1), libxxf86vm1 (= 1:1.1.4-1+b2), libyaml-0-2 (= 0.2.5-1), libz3-4 (= 4.8.12-3.1+b2), libzstd-dev (= 1.5.5+dfsg2-2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3), matlab-support-dev (= 0.1), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), mpi-default-bin (= 1.15), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), netbase (= 6.4), ocl-icd-libopencl1 (= 2.3.2-1), octave (= 8.4.0-1+b2), octave-common (= 8.4.0-1), octave-dev (= 8.4.0-1+b2), openmpi-bin (= 4.1.6-7), openmpi-common (= 4.1.6-7), openssh-client (= 1:9.7p1-2), passwd (= 1:4.13+dfsg1-4), patch (= 2.7.6-7), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), pkg-config (= 1.8.1-1+b2), pkgconf (= 1.8.1-1+b2), pkgconf-bin (= 1.8.1-1+b2), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.8-1), python3-distutils (= 3.12.2-3), python3-lib2to3 (= 3.12.2-3), python3-minimal (= 3.11.8-1), python3-pkg-resources (= 68.1.2-2), python3-setuptools (= 68.1.2-2), python3.11 (= 3.11.8-3), python3.11-minimal (= 3.11.8-3), qt5-qmake (= 5.15.10+dfsg-7.2+b1), qt5-qmake-bin (= 5.15.10+dfsg-7.2+b1), qtbase5-dev (= 5.15.10+dfsg-7.2+b1), qtbase5-dev-tools (= 5.15.10+dfsg-7.2+b1), qtchooser (= 66-2), readline-common (= 8.2-3.1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), shared-mime-info (= 2.4-3), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), tex-common (= 6.18), texinfo (= 7.1-3), texinfo-lib (= 7.1-3+b1), tzdata (= 2024a-1), ucf (= 3.0043+nmu1), usr-is-merged (= 39), util-linux (= 2.39.3-10), x11-common (= 1:7.7+23), x11proto-dev (= 2023.2-1), xkb-data (= 2.41-2), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1710604576" +------------------------------------------------------------------------------+ | Package contents Sun, 15 Jun 2025 03:50:33 +0000 | +------------------------------------------------------------------------------+ mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb ----------------------------------- new Debian package, version 2.0. size 471093504 bytes: control archive=5512 bytes. 4981 bytes, 12 lines control 12062 bytes, 114 lines md5sums Package: mrtrix3-dbgsym Source: mrtrix3 (3.0.4-1) Version: 3.0.4-1+b1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 482509 Depends: mrtrix3 (= 3.0.4-1+b1) Section: debug Priority: optional Description: debug symbols for mrtrix3 Build-Ids: 04179ae51707c339a9bead4bfb8a087a85c10cd2 044212b636c3f787b46ced54b7aa730a75b4266c 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./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 22758632 2024-03-16 15:56 ./usr/lib/debug/.dwz/x86_64-linux-gnu/mrtrix3.debug drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/doc/mrtrix3-dbgsym -> mrtrix3 mrtrix3_3.0.4-1+b1_amd64.deb ---------------------------- new Debian package, version 2.0. size 9980212 bytes: control archive=6536 bytes. 1042 bytes, 18 lines control 15840 bytes, 231 lines md5sums Package: mrtrix3 Source: mrtrix3 (3.0.4-1) Version: 3.0.4-1+b1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 55844 Depends: libc6 (>= 2.35), libfftw3-double3 (>= 3.3.10), libgcc-s1 (>= 4.0), libgl1, libgomp1 (>= 4.9), libqt5core5t64 (>= 5.15.1), libqt5gui5t64 (>= 5.11.0~rc1) | libqt5gui5-gles (>= 5.11.0~rc1), libqt5network5t64 (>= 5.0.2), libqt5widgets5t64 (>= 5.15.1), libstdc++6 (>= 13.1), libtiff6 (>= 4.0.3), zlib1g (>= 1:1.1.4), python3 Recommends: python3-numpy Suggests: mrtrix3-doc, octave, matlab-support Conflicts: mrtrix Section: science Priority: optional Homepage: https://www.mrtrix.org Description: diffusion-weighted MRI white matter tractography Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported. drwxr-xr-x root/root 0 2024-03-16 15:56 ./ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/bin/ lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/5tt2gmwmi -> ../lib/mrtrix3/bin/5tt2gmwmi lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/5tt2vis -> ../lib/mrtrix3/bin/5tt2vis lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/5ttcheck -> ../lib/mrtrix3/bin/5ttcheck lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/5ttedit -> ../lib/mrtrix3/bin/5ttedit lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/5ttgen -> ../lib/mrtrix3/bin/5ttgen lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/afdconnectivity -> ../lib/mrtrix3/bin/afdconnectivity lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/amp2response -> ../lib/mrtrix3/bin/amp2response lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/amp2sh -> ../lib/mrtrix3/bin/amp2sh lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/blend -> ../lib/mrtrix3/bin/blend lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/connectome2tck -> ../lib/mrtrix3/bin/connectome2tck lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/connectomeedit -> ../lib/mrtrix3/bin/connectomeedit lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/connectomestats -> ../lib/mrtrix3/bin/connectomestats lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/convert_bruker -> ../lib/mrtrix3/bin/convert_bruker lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dcmedit -> ../lib/mrtrix3/bin/dcmedit lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dcminfo -> ../lib/mrtrix3/bin/dcminfo lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dirflip -> ../lib/mrtrix3/bin/dirflip lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dirgen -> ../lib/mrtrix3/bin/dirgen lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dirmerge -> ../lib/mrtrix3/bin/dirmerge lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dirorder -> ../lib/mrtrix3/bin/dirorder lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dirstat -> ../lib/mrtrix3/bin/dirstat lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwi2adc -> ../lib/mrtrix3/bin/dwi2adc lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwi2fod -> ../lib/mrtrix3/bin/dwi2fod lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwi2mask -> ../lib/mrtrix3/bin/dwi2mask lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwi2response -> ../lib/mrtrix3/bin/dwi2response lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwi2tensor -> ../lib/mrtrix3/bin/dwi2tensor lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwibiascorrect -> ../lib/mrtrix3/bin/dwibiascorrect lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwicat -> ../lib/mrtrix3/bin/dwicat lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwidenoise -> ../lib/mrtrix3/bin/dwidenoise lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwiextract -> ../lib/mrtrix3/bin/dwiextract lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/dwifslpreproc -> 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root/root 0 2024-03-16 15:56 ./usr/bin/labelconvert -> ../lib/mrtrix3/bin/labelconvert lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/labelsgmfix -> ../lib/mrtrix3/bin/labelsgmfix lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/labelstats -> ../lib/mrtrix3/bin/labelstats lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/maskdump -> ../lib/mrtrix3/bin/maskdump lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/maskfilter -> ../lib/mrtrix3/bin/maskfilter lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mesh2voxel -> ../lib/mrtrix3/bin/mesh2voxel lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/meshconvert -> ../lib/mrtrix3/bin/meshconvert lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/meshfilter -> ../lib/mrtrix3/bin/meshfilter lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mraverageheader -> ../lib/mrtrix3/bin/mraverageheader lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrcalc -> ../lib/mrtrix3/bin/mrcalc lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrcat -> 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./usr/bin/mrhistmatch -> ../lib/mrtrix3/bin/mrhistmatch lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrhistogram -> ../lib/mrtrix3/bin/mrhistogram lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrinfo -> ../lib/mrtrix3/bin/mrinfo lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrmath -> ../lib/mrtrix3/bin/mrmath lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrmetric -> ../lib/mrtrix3/bin/mrmetric lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrregister -> ../lib/mrtrix3/bin/mrregister lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrstats -> ../lib/mrtrix3/bin/mrstats lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrthreshold -> ../lib/mrtrix3/bin/mrthreshold lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrtransform -> ../lib/mrtrix3/bin/mrtransform lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrtrix3.py -> ../lib/mrtrix3/bin/mrtrix3.py lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrtrix_cleanup -> ../lib/mrtrix3/bin/mrtrix_cleanup lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mrview -> ../lib/mrtrix3/bin/mrview lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/mtnormalise -> ../lib/mrtrix3/bin/mtnormalise lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/notfound -> ../lib/mrtrix3/bin/notfound lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/peaks2amp -> ../lib/mrtrix3/bin/peaks2amp lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/peaks2fixel -> ../lib/mrtrix3/bin/peaks2fixel lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/population_template -> ../lib/mrtrix3/bin/population_template lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/responsemean -> ../lib/mrtrix3/bin/responsemean lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/sh2amp -> ../lib/mrtrix3/bin/sh2amp lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/sh2peaks -> ../lib/mrtrix3/bin/sh2peaks lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/sh2power -> ../lib/mrtrix3/bin/sh2power lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/sh2response -> ../lib/mrtrix3/bin/sh2response lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/shbasis -> ../lib/mrtrix3/bin/shbasis lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/shconv -> ../lib/mrtrix3/bin/shconv lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/shview -> ../lib/mrtrix3/bin/shview lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tck2connectome -> ../lib/mrtrix3/bin/tck2connectome lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tck2fixel -> ../lib/mrtrix3/bin/tck2fixel lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckconvert -> ../lib/mrtrix3/bin/tckconvert lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckdfc -> ../lib/mrtrix3/bin/tckdfc lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckedit -> ../lib/mrtrix3/bin/tckedit lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckgen -> ../lib/mrtrix3/bin/tckgen lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckglobal -> ../lib/mrtrix3/bin/tckglobal lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckinfo -> ../lib/mrtrix3/bin/tckinfo lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckmap -> ../lib/mrtrix3/bin/tckmap lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckresample -> ../lib/mrtrix3/bin/tckresample lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tcksample -> ../lib/mrtrix3/bin/tcksample lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tcksift -> ../lib/mrtrix3/bin/tcksift lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tcksift2 -> ../lib/mrtrix3/bin/tcksift2 lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tckstats -> ../lib/mrtrix3/bin/tckstats lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tcktransform -> ../lib/mrtrix3/bin/tcktransform lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tensor2metric -> ../lib/mrtrix3/bin/tensor2metric lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/transformcalc -> ../lib/mrtrix3/bin/transformcalc lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/transformcompose -> ../lib/mrtrix3/bin/transformcompose lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/transformconvert -> ../lib/mrtrix3/bin/transformconvert lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tsfdivide -> ../lib/mrtrix3/bin/tsfdivide lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tsfinfo -> ../lib/mrtrix3/bin/tsfinfo lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tsfmult -> ../lib/mrtrix3/bin/tsfmult lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tsfsmooth -> ../lib/mrtrix3/bin/tsfsmooth lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tsfthreshold -> ../lib/mrtrix3/bin/tsfthreshold lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/tsfvalidate -> ../lib/mrtrix3/bin/tsfvalidate lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/vectorstats -> ../lib/mrtrix3/bin/vectorstats lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/voxel2fixel -> ../lib/mrtrix3/bin/voxel2fixel lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/voxel2mesh -> ../lib/mrtrix3/bin/voxel2mesh lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/warp2metric -> ../lib/mrtrix3/bin/warp2metric lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/warpconvert -> ../lib/mrtrix3/bin/warpconvert lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/warpcorrect -> ../lib/mrtrix3/bin/warpcorrect lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/warpinit -> ../lib/mrtrix3/bin/warpinit lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/bin/warpinvert -> ../lib/mrtrix3/bin/warpinvert drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/lib/mrtrix3/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/ -rwxr-xr-x root/root 264696 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/5tt2gmwmi -rwxr-xr-x root/root 256504 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/5tt2vis -rwxr-xr-x root/root 252408 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/5ttcheck -rwxr-xr-x root/root 268792 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/5ttedit -rwxr-xr-x root/root 3734 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/5ttgen -rwxr-xr-x root/root 1104616 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/afdconnectivity -rwxr-xr-x root/root 321968 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/amp2response -rwxr-xr-x root/root 420280 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/amp2sh -rwxr-xr-x root/root 2400 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/blend -rwxr-xr-x root/root 588400 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/connectome2tck -rwxr-xr-x root/root 211440 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/connectomeedit -rwxr-xr-x root/root 338400 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/connectomestats -rwxr-xr-x root/root 4467 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/convert_bruker -rwxr-xr-x root/root 55712 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dcmedit -rwxr-xr-x root/root 51616 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dcminfo -rwxr-xr-x root/root 129456 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dirflip -rwxr-xr-x root/root 158160 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dirgen -rwxr-xr-x root/root 96672 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dirmerge -rwxr-xr-x root/root 203168 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dirorder -rwxr-xr-x root/root 137648 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dirsplit -rwxr-xr-x root/root 215464 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dirstat -rwxr-xr-x root/root 203192 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwi2adc -rwxr-xr-x root/root 584120 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwi2fod -rwxr-xr-x root/root 420272 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwi2mask -rwxr-xr-x root/root 6403 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwi2response -rwxr-xr-x root/root 240048 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwi2tensor -rwxr-xr-x root/root 3558 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwibiascorrect -rwxr-xr-x root/root 8236 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwicat -rwxr-xr-x root/root 1018288 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwidenoise -rwxr-xr-x root/root 149936 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwiextract -rwxr-xr-x root/root 85184 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwifslpreproc -rwxr-xr-x root/root 8954 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwigradcheck -rwxr-xr-x root/root 2130 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwinormalise -rwxr-xr-x root/root 4030 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/dwishellmath -rwxr-xr-x root/root 190912 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixel2peaks -rwxr-xr-x root/root 203200 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixel2sh -rwxr-xr-x root/root 785160 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixel2tsf -rwxr-xr-x root/root 608912 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixel2voxel -rwxr-xr-x root/root 1334056 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixelcfestats -rwxr-xr-x root/root 981768 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixelconnectivity -rwxr-xr-x root/root 289216 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixelconvert -rwxr-xr-x root/root 272832 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixelcorrespondence -rwxr-xr-x root/root 235968 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixelcrop -rwxr-xr-x root/root 1239848 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixelfilter -rwxr-xr-x root/root 256448 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fixelreorient -rwxr-xr-x root/root 412080 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fod2dec -rwxr-xr-x root/root 559560 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/fod2fixel -rwxr-xr-x root/root 16951 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/for_each -rwxr-xr-x root/root 5131 2022-12-14 10:16 ./usr/lib/mrtrix3/bin/gen_scheme -rwxr-xr-x root/root 264624 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/label2colour -rwxr-xr-x root/root 506304 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/label2mesh -rwxr-xr-x root/root 264624 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/labelconvert -rwxr-xr-x root/root 9665 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/labelsgmfix -rwxr-xr-x root/root 207304 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/labelstats -rwxr-xr-x root/root 117168 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/maskdump -rwxr-xr-x root/root 276976 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/maskfilter -rwxr-xr-x root/root 555448 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mesh2voxel -rwxr-xr-x root/root 424440 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/meshconvert -rwxr-xr-x root/root 440776 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/meshfilter -rwxr-xr-x root/root 776648 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mraverageheader -rwxr-xr-x root/root 358832 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrcalc -rwxr-xr-x root/root 379312 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrcat -rwxr-xr-x root/root 129456 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrcentroid -rwxr-xr-x root/root 108976 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrcheckerboardmask -rwxr-xr-x root/root 358832 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrclusterstats -rwxr-xr-x root/root 158136 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrcolour -rwxr-xr-x root/root 653752 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrconvert -rwxr-xr-x root/root 166320 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrdegibbs -rwxr-xr-x root/root 391600 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrdump -rwxr-xr-x root/root 125360 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mredit -rwxr-xr-x root/root 596472 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrfilter -rwxr-xr-x root/root 395784 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrgrid -rwxr-xr-x root/root 256488 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrhistmatch -rwxr-xr-x root/root 137648 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrhistogram -rwxr-xr-x root/root 129440 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrinfo -rwxr-xr-x root/root 1251880 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrmath -rwxr-xr-x root/root 907848 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrmetric -rwxr-xr-x root/root 3680984 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrregister -rwxr-xr-x root/root 137648 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrstats -rwxr-xr-x root/root 453040 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrthreshold -rwxr-xr-x root/root 1374736 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrtransform -rw-r--r-- root/root 2395 2022-12-14 10:16 ./usr/lib/mrtrix3/bin/mrtrix3.py -rwxr-xr-x root/root 6835 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrtrix_cleanup -rwxr-xr-x root/root 3222904 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mrview -rwxr-xr-x root/root 395752 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/mtnormalise -rwxr-xr-x root/root 1494 2022-12-14 10:16 ./usr/lib/mrtrix3/bin/notfound -rwxr-xr-x root/root 108976 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/peaks2amp -rwxr-xr-x root/root 162240 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/peaks2fixel -rwxr-xr-x root/root 73231 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/population_template -rwxr-xr-x root/root 5271 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/responsemean -rwxr-xr-x root/root 194992 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/sh2amp -rwxr-xr-x root/root 252832 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/sh2peaks -rwxr-xr-x root/root 133552 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/sh2power -rwxr-xr-x root/root 182704 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/sh2response -rwxr-xr-x root/root 272880 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/shbasis -rwxr-xr-x root/root 154032 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/shconv -rwxr-xr-x root/root 592600 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/shview -rwxr-xr-x root/root 608880 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tck2connectome -rwxr-xr-x root/root 928584 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tck2fixel -rwxr-xr-x root/root 408056 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckconvert -rwxr-xr-x root/root 928616 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckdfc -rwxr-xr-x root/root 367096 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckedit -rwxr-xr-x root/root 1907528 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckgen -rwxr-xr-x root/root 584184 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckglobal -rwxr-xr-x root/root 219640 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckinfo -rwxr-xr-x root/root 1510184 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckmap -rwxr-xr-x root/root 358904 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckresample -rwxr-xr-x root/root 912168 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tcksample -rwxr-xr-x root/root 1436392 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tcksift -rwxr-xr-x root/root 1411816 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tcksift2 -rwxr-xr-x root/root 240184 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tckstats -rwxr-xr-x root/root 350712 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tcktransform -rwxr-xr-x root/root 199136 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tensor2metric -rwxr-xr-x root/root 297480 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/transformcalc -rwxr-xr-x root/root 182704 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/transformcompose -rwxr-xr-x root/root 100792 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/transformconvert -rwxr-xr-x root/root 223736 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tsfdivide -rwxr-xr-x root/root 211448 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tsfinfo -rwxr-xr-x root/root 223736 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tsfmult -rwxr-xr-x root/root 219640 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tsfsmooth -rwxr-xr-x root/root 215544 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tsfthreshold -rwxr-xr-x root/root 227832 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/tsfvalidate -rwxr-xr-x root/root 219568 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/vectorstats -rwxr-xr-x root/root 207296 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/voxel2fixel -rwxr-xr-x root/root 481720 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/voxel2mesh -rwxr-xr-x root/root 268736 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/warp2metric -rwxr-xr-x root/root 260584 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/warpconvert -rwxr-xr-x root/root 149936 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/warpcorrect -rwxr-xr-x root/root 121264 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/warpinit -rwxr-xr-x root/root 166320 2024-03-16 15:56 ./usr/lib/mrtrix3/bin/warpinvert drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/lib/mrtrix3/icons/ -rw-r--r-- root/root 475 2022-12-14 10:16 ./usr/lib/mrtrix3/icons/adjustbutton.svg -rw-r--r-- root/root 2271 2022-12-14 10:16 ./usr/lib/mrtrix3/icons/brush.svg -rw-r--r-- root/root 1893 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root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mrmetric.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mrregister.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mrstats.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mrthreshold.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mrtransform.1.gz -> mrtrix3.1.gz -rw-r--r-- root/root 724 2024-03-16 15:56 ./usr/share/man/man1/mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mrtrix3.py.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mrtrix_cleanup.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mrview.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/mtnormalise.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/notfound.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/peaks2amp.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/peaks2fixel.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/population_template.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/responsemean.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/sh2amp.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/sh2peaks.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/sh2power.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/sh2response.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/shbasis.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/shconv.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/shview.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tck2connectome.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tck2fixel.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckconvert.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckdfc.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckedit.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckgen.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckglobal.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckinfo.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckmap.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckresample.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tcksample.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tcksift.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tcksift2.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tckstats.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tcktransform.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tensor2metric.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/transformcalc.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/transformcompose.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/transformconvert.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tsfdivide.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tsfinfo.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tsfmult.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tsfsmooth.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tsfthreshold.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/tsfvalidate.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/vectorstats.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/voxel2fixel.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/voxel2mesh.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/warp2metric.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/warpconvert.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/warpcorrect.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/warpinit.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/man/man1/warpinvert.1.gz -> mrtrix3.1.gz drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/matlab/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/matlab/site/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/matlab/site/m/ lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/matlab/site/m/mrtrix -> ../../../mrtrix3/matlab drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/mrtrix3/ drwxr-xr-x root/root 0 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/ drwxr-xr-x root/root 0 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/private/ -rw-r--r-- root/root 1002 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/private/add_field.m -rw-r--r-- root/root 3499 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/read_mrtrix.m -rw-r--r-- root/root 2689 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/read_mrtrix_tracks.m -rw-r--r-- root/root 2579 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/read_mrtrix_tsf.m -rw-r--r-- root/root 5025 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/write_mrtrix.m -rw-r--r-- root/root 2090 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/write_mrtrix_tracks.m -rw-r--r-- root/root 2070 2022-12-14 10:16 ./usr/share/mrtrix3/matlab/write_mrtrix_tsf.m drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/octave/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/octave/site/ drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/octave/site/m/ lrwxrwxrwx root/root 0 2024-03-16 15:56 ./usr/share/octave/site/m/mrtrix -> ../../../mrtrix3/matlab drwxr-xr-x root/root 0 2024-03-16 15:56 ./usr/share/pixmaps/ -rw-r--r-- root/root 9782 2024-03-16 15:56 ./usr/share/pixmaps/mrtrix.png +------------------------------------------------------------------------------+ | Post Build Sun, 15 Jun 2025 03:50:39 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 15 Jun 2025 03:50:39 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 15 Jun 2025 03:50:45 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 7390112 Build-Time: 1575 Distribution: unstable Host Architecture: amd64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdWp4pKu/inputs/mrtrix3_3.0.4-1.dsc Machine Architecture: amd64 Package: mrtrix3 Package-Time: 1599 Source-Version: 3.0.4-1 Space: 7390112 Status: successful Version: 3.0.4-1+b1 -------------------------------------------------------------------------------- Finished at 2025-06-15T03:50:30Z Build needed 00:26:39, 7390112k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdWp4pKu/out checking mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb: size differs for mrtrix3-dbgsym_3.0.4-1+b1_amd64.deb