=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdj7YziV/inputs/r-cran-seurat_5.2.1-5_amd64.buildinfo Source: r-cran-seurat Version: 5.2.1-5 rebuilderd-worker node: osuosl4-amd64 +------------------------------------------------------------------------------+ | Downloading sources Thu, 19 Jun 2025 15:03:37 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [166 kB] Get:2 https://deb.debian.org/debian sid InRelease [208 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [10.9 MB] Fetched 21.9 MB in 2s (9,639 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/r/r-cran-seurat/r-cran-seurat_5.2.1-5.dsc' r-cran-seurat_5.2.1-5.dsc 3404 SHA256:18b7bf442b6c8de7e4d7da69d89372371a7718166380a83a59153cf457b2e07c 'https://deb.debian.org/debian/pool/main/r/r-cran-seurat/r-cran-seurat_5.2.1.orig.tar.gz' r-cran-seurat_5.2.1.orig.tar.gz 2087856 SHA256:0e99c0f9a6fee4a1e5e241aa2f8bb82288ff08185680f283124854a7b22fda19 'https://deb.debian.org/debian/pool/main/r/r-cran-seurat/r-cran-seurat_5.2.1-5.debian.tar.xz' r-cran-seurat_5.2.1-5.debian.tar.xz 5020 SHA256:3767a1edb1c0122bee7333f418739e3516c530e3f898dec9c81f002fe89c248e 0e99c0f9a6fee4a1e5e241aa2f8bb82288ff08185680f283124854a7b22fda19 r-cran-seurat_5.2.1.orig.tar.gz 3767a1edb1c0122bee7333f418739e3516c530e3f898dec9c81f002fe89c248e r-cran-seurat_5.2.1-5.debian.tar.xz 18b7bf442b6c8de7e4d7da69d89372371a7718166380a83a59153cf457b2e07c r-cran-seurat_5.2.1-5.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Thu, 19 Jun 2025 15:03:40 +0000 | +------------------------------------------------------------------------------+ Rebuilding r-cran-seurat=5.2.1-5 in /srv/rebuilderd/tmp/rebuilderdj7YziV/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdj7YziV/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdj7YziV/inputs/r-cran-seurat_5.2.1-5_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdj7YziV/inputs/r-cran-seurat_5.2.1-5_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/r-cran-seurat-5.2.1 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid InRelease [205 kB] Get:2 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 Packages [10.2 MB] Fetched 10.4 MB in 1s (9527 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250406T210903Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Fetched 11.2 kB in 0s (991 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptrldi2qf/libeval-closure-perl_0.14-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (1930 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp8bo7xwy/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libc-dev-bin amd64 2.41-6 [57.0 kB] Fetched 57.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz18womqf/libc-dev-bin_2.41-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Fetched 23.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb8zd1f1j/libffi8_3.4.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Fetched 245 kB in 0s (23.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzrbywdz_/libssh2-1t64_1.11.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB] Fetched 45.9 kB in 0s (3866 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa0e7tlz1/r-cran-sourcetools_0.1.7-1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Fetched 105 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxdfo17kj/libncurses6_6.5+20250216-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Fetched 1185 kB in 0s (77.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7b713bl8/groff-base_1.23.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Fetched 8808 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd2tk51oy/libtext-wrapi18n-perl_0.06-10_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpficyul23/libpam-runtime_1.7.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Fetched 12.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpswwkq6h8/libwww-curl-simple-perl_0.100191-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-bitops amd64 1.0-9-1 [30.7 kB] Fetched 30.7 kB in 0s (1045 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87jkso3s/r-cran-bitops_1.0-9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-dotcall64 amd64 1.2-1 [34.5 kB] Fetched 34.5 kB in 0s (2958 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpov0j_pcd/r-cran-dotcall64_1.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1445 kB] Fetched 1445 kB in 0s (33.6 MB/s) dpkg-name: info: moved 'r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpkzkjqsil/r-cran-sp_2.2-0+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-spatstat.data all 3.1-6-1 [4144 kB] Fetched 4144 kB in 0s (49.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp48nm99f7/r-cran-spatstat.data_3.1-6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Fetched 132 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmjk79mgs/libjs-d3_3.5.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Fetched 226 kB in 0s (5800 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_wk53qcs/r-cran-withr_3.0.2+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1212 kB] Fetched 1212 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1k4pidra/r-cran-colourpicker_1.3.0+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-goftest amd64 1.2-3-1+b1 [59.6 kB] Fetched 59.6 kB in 0s (2561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp__5kksnh/r-cran-goftest_1.2-3-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Fetched 188 kB in 0s (17.8 MB/s) dpkg-name: info: moved 'libxt6t64_1%3a1.2.1-1.2+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpbuksy6hy/libxt6t64_1.2.1-1.2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB] Fetched 304 kB in 0s (29.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpofrh4r1k/libzstd1_1.5.7+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Fetched 7144 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyj4z2_j2/libdevel-globaldestruction-perl_0.14-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Fetched 26.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpekmp004t/libdevel-stacktrace-perl_2.0500-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbrq5qcnr/bzip2_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB] Fetched 226 kB in 0s (21.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbevekb4m/libpango-1.0-0_1.56.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB] Fetched 1514 kB in 0s (23.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe32so178/libglib2.0-0t64_2.84.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq9c4eec9/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-pbapply all 1.7-2-1 [103 kB] Fetched 103 kB in 0s (2817 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbhld_6s6/r-cran-pbapply_1.7-2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Fetched 12.1 MB in 0s (148 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnfy0yn9k/g++-14-x86-64-linux-gnu_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libaudit1 amd64 1:4.0.2-2+b2 [55.1 kB] Fetched 55.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpc41ztrlq/libaudit1_4.0.2-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Fetched 698 kB in 0s (53.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkv_fzle8/libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liburi-perl all 5.30-1 [105 kB] Fetched 105 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5s3kimmh/liburi-perl_5.30-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmagic-mgc amd64 1:5.46-4 [337 kB] Fetched 337 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp9cb_6c70/libmagic-mgc_5.46-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2105 kB] Fetched 2105 kB in 0s (31.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe3a9wnwn/r-cran-data.table_1.17.0+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] Fetched 123 kB in 0s (6666 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zsgmboj/r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Fetched 425 kB in 0s (39.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpccp4a5ju/libp11-kit0_0.25.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-lazyeval amd64 0.2.2-1+b1 [142 kB] Fetched 142 kB in 0s (7554 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptexemweb/r-cran-lazyeval_0.2.2-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxnfps0n/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 ca-certificates all 20241223 [164 kB] Fetched 164 kB in 0s (15.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkxldb3qr/ca-certificates_20241223_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmount1 amd64 2.41-3 [208 kB] Fetched 208 kB in 0s (20.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt61qfhat/libmount1_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-curl amd64 6.2.1+dfsg-1 [195 kB] Fetched 195 kB in 0s (6948 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0wpmdke/r-cran-curl_6.2.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmagic1t64 amd64 1:5.46-4 [109 kB] Fetched 109 kB in 0s (10.8 MB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpfdamsfhi/libmagic1t64_5.46-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Fetched 1074 kB in 0s (65.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_mq9_b18/libubsan1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Fetched 5136 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpbrm4dkrf/gcc_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Fetched 479 kB in 0s (40.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc1abug2u/libharfbuzz0b_10.2.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libperl5.40 amd64 5.40.1-2 [4315 kB] Fetched 4315 kB in 0s (117 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwb7t_ufj/libperl5.40_5.40.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblastlog2-2 amd64 2.41-3 [28.3 kB] Fetched 28.3 kB in 0s (2731 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4bgj47de/liblastlog2-2_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-survival amd64 3.8-3-1 [8265 kB] Fetched 8265 kB in 0s (83.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsedhek76/r-cran-survival_3.8-3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 bash amd64 5.2.37-1.1+b2 [1500 kB] Fetched 1500 kB in 0s (80.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5upcontc/bash_5.2.37-1.1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB] Fetched 445 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpznv_o0z5/r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libbinutils amd64 2.44-3 [534 kB] Fetched 534 kB in 0s (38.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4rydt4q2/libbinutils_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rtsne amd64 0.17-1 [105 kB] Fetched 105 kB in 0s (4620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzxjm3jt7/r-cran-rtsne_0.17-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Fetched 305 kB in 0s (26.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi6cd17no/libnettle8t64_3.10.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-fnn amd64 1.1.4.1-1 [125 kB] Fetched 125 kB in 0s (7405 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5oa2rrt/r-cran-fnn_1.1.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Fetched 26.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqjlu3fup/libitm1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpam0g amd64 1.7.0-3 [69.7 kB] Fetched 69.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnu6mx7cb/libpam0g_1.7.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Fetched 39.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm2e92h59/libjansson4_2.14-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Fetched 9308 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3j9in_nb/libatomic1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-fansi amd64 1.0.6-1 [629 kB] Fetched 629 kB in 0s (17.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnegng0no/r-cran-fansi_1.0.6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 littler all 0.3.21-1 [16.9 kB] Fetched 16.9 kB in 0s (468 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_c2phbj2/littler_0.3.21-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Fetched 24.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzppk8ac/libcom-err2_1.47.2-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Fetched 27.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpha7gzjar/python3-minimal_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (1014 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn_0ytkzy/hostname_3.25_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Fetched 42.0 kB in 0s (4033 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp361t6sbu/libpipeline1_1.5.8-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-deldir amd64 2.0-4-1 [286 kB] Fetched 286 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1r6au1ik/r-cran-deldir_2.0-4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Fetched 19.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8o2m88w8/libmodule-runtime-perl_0.016-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpcre2-posix3 amd64 10.45-1 [63.5 kB] Fetched 63.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl4iccong/libpcre2-posix3_10.45-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 binutils amd64 2.44-3 [265 kB] Fetched 265 kB in 0s (25.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpenqg00y8/binutils_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libc6 amd64 2.41-6 [2843 kB] Fetched 2843 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0vm9iu5f/libc6_2.41-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-purrr amd64 1.0.4-1 [556 kB] Fetched 556 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q4u5rsh/r-cran-purrr_1.0.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Fetched 11.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5gcb37i/libsub-identify-perl_0.14-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb9elgfj_/build-essential_12.12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxmuu1 amd64 2:1.1.3-3+b4 [21.9 kB] Fetched 21.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxmuu1_2%3a1.1.3-3+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmp99rfav5e/libxmuu1_1.1.3-3+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Fetched 50.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmp6itk3eeb/libxext6_1.3.4-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Fetched 335 kB in 0s (27.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_m2dkzb9/libhogweed6t64_3.10.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Fetched 38.3 kB in 0s (3429 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7zfwhvx4/r-cran-highr_0.11+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Fetched 459 kB in 0s (18.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbluj9405/r-cran-httr_1.4.7+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Fetched 538 kB in 0s (43.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9pg2vxwh/libcairo2_1.18.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Fetched 21.0 kB in 0s (2021 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0gj8ux7u/libclass-c3-perl_0.35-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 man-db amd64 2.13.0-1 [1420 kB] Fetched 1420 kB in 0s (76.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpokvd8azb/man-db_2.13.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Fetched 53.8 kB in 0s (2672 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgegn0mt/r-cran-memoise_2.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpam-modules-bin amd64 1.7.0-3 [48.9 kB] Fetched 48.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrb4bkee/libpam-modules-bin_1.7.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Fetched 64.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-7_amd64.deb' to '/srv/rebuilderd/tmp/tmppa3c5n7i/libproc2-0_4.0.4-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Fetched 172 kB in 0s (9896 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpef1az9gm/libjs-bootstrap_3.4.1+dfsg-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Fetched 84.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_g0g4vly/libselinux1_3.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-ica all 1.0-3-1 [86.7 kB] Fetched 86.7 kB in 0s (2558 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8qs_2528/r-cran-ica_1.0-3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libssl3t64 amd64 3.4.1-1 [2304 kB] Fetched 2304 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8lsj0mdx/libssl3t64_3.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Fetched 19.6 kB in 0s (1444 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp36ubp6rl/r-cran-pkgconfig_2.0.3-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 diffutils amd64 1:3.10-3 [385 kB] Fetched 385 kB in 0s (34.4 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp6q1b4uyv/diffutils_3.10-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-base-core amd64 4.4.3-1+b1 [28.3 MB] Fetched 28.3 MB in 0s (143 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkyeu8j88/r-base-core_4.4.3-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 perl-modules-5.40 all 5.40.1-2 [3017 kB] Fetched 3017 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf4gyls0q/perl-modules-5.40_5.40.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdpkg-perl all 1.22.18 [649 kB] Fetched 649 kB in 0s (48.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxni94skt/libdpkg-perl_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Fetched 186 kB in 0s (4774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1uqid3k4/node-bootstrap-sass_3.4.3-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Fetched 17.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3oi6tdx1/libnamespace-clean-perl_0.27-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Fetched 3933 kB in 0s (72.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbt18ifvk/r-cran-ggplot2_3.5.1+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-matrixstats amd64 1.5.0-1 [502 kB] Fetched 502 kB in 0s (4287 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_x0rvlia/r-cran-matrixstats_1.5.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-spatstat.utils amd64 3.1-3-1 [386 kB] Fetched 386 kB in 0s (35.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8dt8ukab/r-cran-spatstat.utils_3.1-3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-cpp11 all 0.5.2-1 [226 kB] Fetched 226 kB in 0s (3358 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_c_txvoh/r-cran-cpp11_0.5.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Fetched 50.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7_9g78aa/libgdbm-compat4t64_1.24-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Fetched 489 kB in 0s (38.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnhd3p8zz/fonts-dejavu-mono_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-plotly all 4.10.4+dfsg-2 [3634 kB] Fetched 3634 kB in 0s (64.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn1bskqek/r-cran-plotly_4.10.4+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB] Fetched 913 kB in 0s (61.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1rjxk361/libsqlite3-0_3.46.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-mgcv amd64 1.9-3-1 [3378 kB] Fetched 3378 kB in 0s (15.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgsl35fmf/r-cran-mgcv_1.9-3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Fetched 1568 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpmyb4k9ab/cpp_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Fetched 12.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7pyb60vo/libdynaloader-functions-perl_0.004-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Fetched 296 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpja3zqz2f/r-cran-stringr_1.5.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Fetched 10.1 kB in 0s (867 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2wy82egd/libpython3-stdlib_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Fetched 10.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpftv14n32/libsub-install-perl_0.929-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Fetched 57.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgpm1c0by/libwww-curl-perl_4.17-11_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsframe1 amd64 2.44-3 [78.4 kB] Fetched 78.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_6u6k983/libsframe1_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 ucf all 3.0051 [42.8 kB] Fetched 42.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3e6sser_/ucf_3.0051_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Fetched 26.4 MB in 0s (144 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2l_5aii_/pandoc_3.1.11.1+ds-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Fetched 165 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp7g2ybel/r-cran-glue_1.8.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 debhelper all 13.24.2 [919 kB] Fetched 919 kB in 0s (58.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm24trp2g/debhelper_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Fetched 37.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmponeud9cn/libbz2-1.0_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Fetched 13.9 kB in 0s (1178 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp733i9yvj/libclone-perl_0.47-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (2469 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1_hyy1hi/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] Fetched 832 kB in 0s (21.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppx5v54ta/r-cran-plyr_1.8.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Fetched 1299 kB in 0s (44.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ved822i/r-cran-viridislite_0.4.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 make amd64 4.4.1-2 [463 kB] Fetched 463 kB in 0s (39.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfetn3lba/make_4.4.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Fetched 14.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64k712zo/libclass-load-xs-perl_0.10-2+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-spatstat.random amd64 3.3-3-1 [1170 kB] Fetched 1170 kB in 0s (29.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4dbcsa34/r-cran-spatstat.random_3.3-3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB] Fetched 1543 kB in 0s (29.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl2cxaphp/r-cran-dplyr_1.1.4-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libicu-dev amd64 76.1-3 [10.8 MB] Fetched 10.8 MB in 0s (142 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8v_f6bb/libicu-dev_76.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcurl3t64-gnutls amd64 8.13.0-1 [374 kB] Fetched 374 kB in 0s (9597 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9hqw7jr5/libcurl3t64-gnutls_8.13.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 perl-base amd64 5.40.1-2 [1665 kB] Fetched 1665 kB in 0s (85.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp14r9d7ws/perl-base_5.40.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Fetched 237 kB in 0s (4096 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhwbyqv5/r-cran-munsell_0.5.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 findutils amd64 4.10.0-3 [700 kB] Fetched 700 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7xr316gr/findutils_4.10.0-3_amd64.deb' Downloading dependency 1 of 509: libeval-closure-perl:amd64=0.14-3 Downloading dependency 2 of 509: libfile-stripnondeterminism-perl:amd64=1.14.1-2 Downloading dependency 3 of 509: libc-dev-bin:amd64=2.41-6 Downloading dependency 4 of 509: libffi8:amd64=3.4.7-1 Downloading dependency 5 of 509: libssh2-1t64:amd64=1.11.1-1 Downloading dependency 6 of 509: r-cran-sourcetools:amd64=0.1.7-1-1 Downloading dependency 7 of 509: libncurses6:amd64=6.5+20250216-2 Downloading dependency 8 of 509: groff-base:amd64=1.23.0-7 Downloading dependency 9 of 509: libtext-wrapi18n-perl:amd64=0.06-10 Downloading dependency 10 of 509: libpam-runtime:amd64=1.7.0-3 Downloading dependency 11 of 509: libwww-curl-simple-perl:amd64=0.100191-3 Downloading dependency 12 of 509: r-cran-bitops:amd64=1.0-9-1 Downloading dependency 13 of 509: r-cran-dotcall64:amd64=1.2-1 Downloading dependency 14 of 509: r-cran-sp:amd64=1:2.2-0+dfsg-1 Downloading dependency 15 of 509: r-cran-spatstat.data:amd64=3.1-6-1 Downloading dependency 16 of 509: libjs-d3:amd64=3.5.17-4 Downloading dependency 17 of 509: r-cran-withr:amd64=3.0.2+dfsg-1 Downloading dependency 18 of 509: r-cran-colourpicker:amd64=1.3.0+dfsg-1 Downloading dependency 19 of 509: r-cran-goftest:amd64=1.2-3-1+b1 Downloading dependency 20 of 509: libxt6t64:amd64=1:1.2.1-1.2+b2 Downloading dependency 21 of 509: libzstd1:amd64=1.5.7+dfsg-1 Downloading dependency 22 of 509: libdevel-globaldestruction-perl:amd64=0.14-4 Downloading dependency 23 of 509: libdevel-stacktrace-perl:amd64=2.0500-1 Downloading dependency 24 of 509: bzip2:amd64=1.0.8-6 Downloading dependency 25 of 509: libpango-1.0-0:amd64=1.56.3-1 Downloading dependency 26 of 509: libglib2.0-0t64:amd64=2.84.1-1 Downloading dependency 27 of 509: netbase:amd64=6.5 Downloading dependency 28 of 509: r-cran-pbapply:amd64=1.7-2-1 Downloading dependency 29 of 509: g++-14-x86-64-linux-gnu:amd64=14.2.0-19 Downloading dependency 30 of 509: libaudit1:amd64=1:4.0.2-2+b2 Downloading dependency 31 of 509: libxml2:amd64=2.12.7+dfsg+really2.9.14-0.4 Downloading dependency 32 of 509: liburi-perl:amd64=5.30-1 Downloading dependency 33 of 509: libmagic-mgc:amd64=1:5.46-4 Downloading dependency 34 of 509: r-cran-data.table:amd64=1.17.0+dfsg-1 Downloading dependency 35 of 509: r-cran-htmlwidgets:amd64=1.6.4+dfsg-1 Downloading dependency 36 of 509: libp11-kit0:amd64=0.25.5-3 Downloading dependency 37 of 509: r-cran-lazyeval:amd64=0.2.2-1+b1 Downloading dependency 38 of 509: autotools-dev:amd64=20240727.1 Downloading dependency 39 of 509: ca-certificates:amd64=20241223 Downloading dependency 40 of 509: libmount1:amd64=2.41-3 Downloading dependency 41 of 509: r-cran-curl:amd64=6.2.1+dfsg-1 Downloading dependency 42 of 509: libmagic1t64:amd64=1:5.46-4 Downloading dependency 43 of 509: libubsan1:amd64=14.2.0-19 Downloading dependency 44 of 509: gcc:amd64=4:14.2.0-1 Downloading dependency 45 of 509: libharfbuzz0b:amd64=10.2.0-1+b1 Downloading dependency 46 of 509: libperl5.40:amd64=5.40.1-2 Downloading dependency 47 of 509: liblastlog2-2:amd64=2.41-3 Downloading dependency 48 of 509: r-cran-survival:amd64=3.8-3-1 Downloading dependency 49 of 509: bash:amd64=5.2.37-1.1+b2 Downloading dependency 50 of 509: r-cran-jsonlite:amd64=1.9.1+dfsg-1 Downloading dependency 51 of 509: libbinutils:amd64=2.44-3 Downloading dependency 52 of 509: r-cran-rtsne:amd64=0.17-1 Downloading dependency 53 of 509: libnettle8t64:amd64=3.10.1-1 Downloading dependency 54 of 509: r-cran-fnn:amd64=1.1.4.1-1 Downloading dependency 55 of 509: libitm1:amd64=14.2.0-19 Downloading dependency 56 of 509: libpam0g:amd64=1.7.0-3 Downloading dependency 57 of 509: libjansson4:amd64=2.14-2+b3 Downloading dependency 58 of 509: libatomic1:amd64=14.2.0-19 Downloading dependency 59 of 509: r-cran-fansi:amd64=1.0.6-1 Downloading dependency 60 of 509: littler:amd64=0.3.21-1 Downloading dependency 61 of 509: libcom-err2:amd64=1.47.2-1+b1 Downloading dependency 62 of 509: python3-minimal:amd64=3.13.2-2 Downloading dependency 63 of 509: hostname:amd64=3.25 Downloading dependency 64 of 509: libpipeline1:amd64=1.5.8-1 Downloading dependency 65 of 509: r-cran-deldir:amd64=2.0-4-1 Downloading dependency 66 of 509: libmodule-runtime-perl:amd64=0.016-2 Downloading dependency 67 of 509: libpcre2-posix3:amd64=10.45-1 Downloading dependency 68 of 509: binutils:amd64=2.44-3 Downloading dependency 69 of 509: libc6:amd64=2.41-6 Downloading dependency 70 of 509: r-cran-purrr:amd64=1.0.4-1 Downloading dependency 71 of 509: libsub-identify-perl:amd64=0.14-3+b3 Downloading dependency 72 of 509: build-essential:amd64=12.12 Downloading dependency 73 of 509: libxmuu1:amd64=2:1.1.3-3+b4 Downloading dependency 74 of 509: libxext6:amd64=2:1.3.4-1+b3 Downloading dependency 75 of 509: libhogweed6t64:amd64=3.10.1-1 Downloading dependency 76 of 509: r-cran-highr:amd64=0.11+dfsg-1 Downloading dependency 77 of 509: r-cran-httr:amd64=1.4.7+dfsg-1 Downloading dependency 78 of 509: libcairo2:amd64=1.18.4-1+b1 Downloading dependency 79 of 509: libclass-c3-perl:amd64=0.35-2 Downloading dependency 80 of 509: man-db:amd64=2.13.0-1 Downloading dependency 81 of 509: r-cran-memoise:amd64=2.0.1-1 Downloading dependency 82 of 509: libpam-modules-bin:amd64=1.7.0-3 Downloading dependency 83 of 509: libproc2-0:amd64=2:4.0.4-7 Downloading dependency 84 of 509: libjs-bootstrap:amd64=3.4.1+dfsg-3 Downloading dependency 85 of 509: libselinux1:amd64=3.8.1-1 Downloading dependency 86 of 509: r-cran-ica:amd64=1.0-3-1 Downloading dependency 87 of 509: libssl3t64:amd64=3.4.1-1 Downloading dependency 88 of 509: r-cran-pkgconfig:amd64=2.0.3-2 Downloading dependency 89 of 509: diffutils:amd64=1:3.10-3 Downloading dependency 90 of 509: r-base-core:amd64=4.4.3-1+b1 Downloading dependency 91 of 509: perl-modules-5.40:amd64=5.40.1-2 Downloading dependency 92 of 509: libdpkg-perl:amd64=1.22.18 Downloading dependency 93 of 509: node-bootstrap-sass:amd64=3.4.3-2 Downloading dependency 94 of 509: libnamespace-clean-perl:amd64=0.27-2 Downloading dependency 95 of 509: r-cran-ggplot2:amd64=3.5.1+dfsg-1 Downloading dependency 96 of 509: r-cran-matrixstats:amd64=1.5.0-1 Downloading dependency 97 of 509: r-cran-spatstat.utils:amd64=3.1-3-1 Downloading dependency 98 of 509: r-cran-cpp11:amd64=0.5.2-1 Downloading dependency 99 of 509: libgdbm-compat4t64:amd64=1.24-2 Downloading dependency 100 of 509: fonts-dejavu-mono:amd64=2.37-8 Downloading dependency 101 of 509: r-cran-plotly:amd64=4.10.4+dfsg-2 Downloading dependency 102 of 509: libsqlite3-0:amd64=3.46.1-2 Downloading dependency 103 of 509: r-cran-mgcv:amd64=1.9-3-1 Downloading dependency 104 of 509: cpp:amd64=4:14.2.0-1 Downloading dependency 105 of 509: libdynaloader-functions-perl:amd64=0.004-1 Downloading dependency 106 of 509: r-cran-stringr:amd64=1.5.1-1 Downloading dependency 107 of 509: libpython3-stdlib:amd64=3.13.2-2 Downloading dependency 108 of 509: libsub-install-perl:amd64=0.929-1 Downloading dependency 109 of 509: libwww-curl-perl:amd64=4.17-11 Downloading dependency 110 of 509: libsframe1:amd64=2.44-3 Downloading dependency 111 of 509: ucf:amd64=3.0051 Downloading dependency 112 of 509: pandoc:amd64=3.1.11.1+ds-2 Downloading dependency 113 of 509: r-cran-glue:amd64=1.8.0-1 Downloading dependency 114 of 509: debhelper:amd64=13.24.2 Downloading dependency 115 of 509: libbz2-1.0:amd64=1.0.8-6 Downloading dependency 116 of 509: libclone-perl:amd64=0.47-1+b1 Downloading dependency 117 of 509: sensible-utils:amd64=0.0.24 Downloading dependency 118 of 509: r-cran-plyr:amd64=1.8.9-1 Downloading dependency 119 of 509: r-cran-viridislite:amd64=0.4.2-2 Downloading dependency 120 of 509: make:amd64=4.4.1-2 Downloading dependency 121 of 509: libclass-load-xs-perl:amd64=0.10-2+b4 Downloading dependency 122 of 509: r-cran-spatstat.random:amd64=3.3-3-1 Downloading dependency 123 of 509: r-cran-dplyr:amd64=1.1.4-4 Downloading dependency 124 of 509: libicu-dev:amd64=76.1-3 Downloading dependency 125 of 509: libcurl3t64-gnutls:amd64=8.13.0-1 Downloading dependency 126 of 509: perl-base:amd64=5.40.1-2 Downloading dependency 127 of 509: r-cran-munsell:amd64=0.5.1-1 Downloading dependency 128 of 509: findutils:amd64=4.10.0-3 Downloading dependency 129 of 509: libtry-tiny-perl:amd64=0.32-1Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6fugurqy/libtry-tiny-perl_0.32-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] Fetched 175 kB in 0s (2075 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk3hy2bxh/r-cran-future.apply_1.11.3+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Fetched 2725 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwn2z9y4m/libasan8_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpng-dev amd64 1.6.47-1.1 [366 kB] Fetched 366 kB in 0s (28.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu79xtwtf/libpng-dev_1.6.47-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 perl amd64 5.40.1-2 [267 kB] Fetched 267 kB in 0s (21.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89ohnb5i/perl_5.40.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rlang amd64 1.1.5-1 [1712 kB] Fetched 1712 kB in 0s (43.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8iqp00q3/r-cran-rlang_1.1.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7d0s4rf/libacl1_2.3.2-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-fs amd64 1.6.5+dfsg-1 [248 kB] Fetched 248 kB in 0s (9801 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2a3tfqpp/r-cran-fs_1.6.5+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Fetched 81.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp251b3j5g/libk5crypto3_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Fetched 815 kB in 0s (54.3 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp_0nsmwrv/libx11-6_1.8.12-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Fetched 2376 kB in 0s (96.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn42i589w/libstdc++-14-dev_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB] Fetched 1370 kB in 0s (26.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplr74zt1i/r-cran-cli_3.6.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rcpptoml amd64 0.2.3+dfsg-1 [114 kB] Fetched 114 kB in 0s (4528 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8qj65br4/r-cran-rcpptoml_0.2.3+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Fetched 35.9 kB in 0s (0 B/s) dpkg-name: info: moved 'xauth_1%3a1.1.2-1.1_amd64.deb' to '/srv/rebuilderd/tmp/tmpwgwns4mj/xauth_1.1.2-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1411 kB] Fetched 1411 kB in 0s (36.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5geioezh/r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgfortran-14-dev amd64 14.2.0-19 [880 kB] Fetched 880 kB in 0s (59.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7oec7wcb/libgfortran-14-dev_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (6932 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprpnxddje/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Fetched 72.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjdvd8wz5/libgcc-s1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsdjrhnnb/libkrb5support0_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (30.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmy3jnv2b/sed_4.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Fetched 110 kB in 0s (5665 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0vl4nklc/r-cran-lifecycle_1.0.4+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Fetched 1436 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpqd2tl3jo/gcc-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 920 kB in 0s (61.1 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp47g28t8w/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB] Fetched 1418 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp93lba90g/r-cran-lattice_0.22-7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-seuratobject amd64 5.0.2-1 [1752 kB] Fetched 1752 kB in 0s (50.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdzss1s6n/r-cran-seuratobject_5.0.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-kernsmooth amd64 2.23-26-1 [93.0 kB] Fetched 93.0 kB in 0s (2435 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0koforaa/r-cran-kernsmooth_2.23-26-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Fetched 250 kB in 0s (23.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp10s6fdob/libjs-jquery-ui_1.13.2+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Fetched 41.5 kB in 0s (2240 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ouek0wv/r-cran-png_0.1-8-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Fetched 75.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3b16_5b1/libnghttp2-14_1.64.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libuuid1 amd64 2.41-3 [37.5 kB] Fetched 37.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2yiwcn6r/libuuid1_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 grep amd64 3.11-4 [431 kB] Fetched 431 kB in 0s (37.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyonroqns/grep_3.11-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB] Fetched 4048 kB in 0s (75.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpexaq2cvc/r-cran-matrix_1.7-3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Fetched 90.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbt9mt09/libdebhelper-perl_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Fetched 22.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptzcddvop/libparams-classify-perl_0.015-2+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-here all 1.0.1-2 [48.7 kB] Fetched 48.7 kB in 0s (2848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg51891ly/r-cran-here_1.0.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 file amd64 1:5.46-4 [43.5 kB] Fetched 43.5 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.46-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp2kdfvqfg/file_5.46-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnogtrsyv/gzip_1.13-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 patch amd64 2.7.6-7 [128 kB] Fetched 128 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx4cmvh3b/patch_2.7.6-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Fetched 9476 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph4itc3wz/libtext-charwidth-perl_0.04-11+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Fetched 27.9 kB in 0s (2201 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt46s0eth/r-cran-base64enc_0.1-3-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libc-bin amd64 2.41-6 [635 kB] Fetched 635 kB in 0s (50.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptp2ddkvk/libc-bin_2.41-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe6npgrwj/libidn2-0_2.3.8-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB] Fetched 35.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9po97qel/libpangocairo-1.0-0_1.56.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Fetched 318 kB in 0s (27.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpshoch8va/libwebp7_1.5.0-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Fetched 397 kB in 0s (9317 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy48y9689/libjs-highlight.js_9.18.5+dfsg1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-future all 1.34.0+dfsg-1 [649 kB] Fetched 649 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpegam7vuj/r-cran-future_1.34.0+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 openssl-provider-legacy amd64 3.4.1-1 [302 kB] Fetched 302 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzb6qh3sq/openssl-provider-legacy_3.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3302 kB] Fetched 3302 kB in 0s (116 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyef_0nm_/r-cran-spatstat.explore_3.3-4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 fontconfig amd64 2.15.0-2.2 [463 kB] Fetched 463 kB in 1s (826 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpie6wlm9d/fontconfig_2.15.0-2.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-cowplot all 1.1.3+dfsg-1 [638 kB] Fetched 638 kB in 1s (925 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp63f809_d/r-cran-cowplot_1.1.3+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Fetched 1464 kB in 0s (76.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpckcswtud/libgnutls30t64_3.8.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (29.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3l_unvm8/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblua5.4-0 amd64 5.4.7-1+b2 [147 kB] Fetched 147 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpotn8jk_1/liblua5.4-0_5.4.7-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Fetched 22.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpouc_sbr6/libnuma1_2.0.18-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libblas-dev amd64 3.12.1-2 [170 kB] Fetched 170 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4slobj8/libblas-dev_3.12.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 openssl amd64 3.4.1-1 [1427 kB] Fetched 1427 kB in 0s (78.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4gn9dwy/openssl_3.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (115 kB/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmps71mf1nx/g++-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3963 kB] Fetched 3963 kB in 0s (53.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5uzabjxe/r-cran-spatstat.geom_3.3-6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpcre2-32-0 amd64 10.45-1 [268 kB] Fetched 268 kB in 0s (26.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4x8x6kg/libpcre2-32-0_10.45-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Fetched 20.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp8d25qps/libpackage-stash-xs-perl_0.30-1+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-tinytex all 0.56-1 [149 kB] Fetched 149 kB in 0s (7175 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8i7q3cuy/r-cran-tinytex_0.56-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Fetched 52.4 kB in 0s (3353 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplritswyc/libjs-popper.js_1.16.1+ds-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Fetched 282 kB in 0s (23.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwin2ryhp/libpng16-16t64_1.6.47-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpcre2-dev amd64 10.45-1 [853 kB] Fetched 853 kB in 0s (56.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxasl454z/libpcre2-dev_10.45-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Fetched 52.1 kB in 0s (3449 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpld7mil_o/libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-miniui all 0.1.1.1-3 [35.9 kB] Fetched 35.9 kB in 0s (1505 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxxr7ozlx/r-cran-miniui_0.1.1.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Fetched 5667 kB in 0s (132 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw1393ukz/libjs-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB] Fetched 281 kB in 0s (25.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwt2ltjdc/libpcre2-16-0_10.45-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Fetched 1614 kB in 0s (40.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppoclzzof/r-cran-isoband_0.2.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-littler amd64 0.3.21-1 [107 kB] Fetched 107 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfjvovvbh/r-cran-littler_0.3.21-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Fetched 168 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl2acdcnu/libthai-data_0.1.29-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Fetched 88.9 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp_nrcjs2g/zlib1g_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Fetched 1204 kB in 0s (74.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_rwm9j50/liblsan0_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libc6-dev amd64 2.41-6 [1988 kB] Fetched 1988 kB in 0s (97.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2kvatpkh/libc6-dev_2.41-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Fetched 68.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6joqy1d0/libuchardet0_0.0.8-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Fetched 133 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_99f6lnn/r-cran-utf8_1.2.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Fetched 67.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz7htucyj/libnghttp3-9_1.8.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsystemd0 amd64 257.4-9 [452 kB] Fetched 452 kB in 0s (39.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfifhefvf/libsystemd0_257.4-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Fetched 307 kB in 0s (29.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp10k8lle0/libbrotli1_1.1.0-2+b7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] Fetched 125 kB in 0s (2469 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaoocc9yc/r-cran-rprojroot_2.0.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Fetched 704 kB in 0s (52.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprxzpkzdi/libdb5.3t64_5.3.28+dfsg2-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Fetched 90.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpj2te19t2/libcrypt1_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcc1-0 amd64 14.2.0-19 [42.8 kB] Fetched 42.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ykumaaa/libcc1-0_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Fetched 162 kB in 0s (1925 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm_o6e30t/fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Fetched 83.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv2i8eeor/libtirpc3t64_1.3.6+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rcppannoy amd64 0.0.22-1 [227 kB] Fetched 227 kB in 0s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ohx_6x1/r-cran-rcppannoy_0.0.22-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libblkid1 amd64 2.41-3 [171 kB] Fetched 171 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvq8djfzq/libblkid1_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-parallelly amd64 1.42.0-1 [541 kB] Fetched 541 kB in 0s (20.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_paxqrm/r-cran-parallelly_1.42.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (42.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp202pr544/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 dpkg amd64 1.22.18 [1545 kB] Fetched 1545 kB in 0s (84.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpczrwajr5/dpkg_1.22.18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpam-modules amd64 1.7.0-3 [177 kB] Fetched 177 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaxke9qsq/libpam-modules_1.7.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Fetched 44.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf1b19scf/libvariable-magic-perl_0.64-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Fetched 243 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuy68ocor/gettext-base_0.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Fetched 1436 B in 0s (0 B/s) dpkg-name: info: moved 'gfortran_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpyyxp9eaa/gfortran_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprpiv0_8s/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Fetched 836 kB in 0s (59.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2mu29zwg/libgfortran5_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcap2 amd64 1:2.75-4 [27.9 kB] Fetched 27.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.75-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpcbljkjgv/libcap2_2.75-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-bslib all 0.9.0+dfsg-1 [4664 kB] Fetched 4664 kB in 0s (53.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf0su960h/r-cran-bslib_0.9.0+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 26.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvo0bh_44/pkgconf_1.8.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-later amd64 1.4.1+dfsg-1 [141 kB] Fetched 141 kB in 0s (4031 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpde__y4uj/r-cran-later_1.4.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Fetched 1716 kB in 0s (28.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm0uvp5zf/r-cran-colorspace_2.1-1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Fetched 30.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpao013gay/pkgconf-bin_1.8.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Fetched 10.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphzqbnd_a/libb-hooks-op-check-perl_0.22-3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [402 kB] Fetched 402 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb1q_ut5y/r-cran-openssl_2.3.2+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbebmoiq/dwz_0.15-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr9ly1oj9/libexpat1_2.7.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 icu-devtools amd64 76.1-3 [215 kB] Fetched 215 kB in 0s (19.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx64vdl2q/icu-devtools_76.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (42.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp591zb5z5/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Fetched 840 kB in 0s (63.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv3i10kx_/fonts-dejavu-core_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB] Fetched 191 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqq0fmy18/libtirpc-dev_1.3.6+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Fetched 517 kB in 0s (42.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp087nkej1/fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB] Fetched 34.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsr8kepo/sysvinit-utils_3.14-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Fetched 2460 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpprdh16s_/libtsan2_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-tensor all 1.5-4 [15.6 kB] Fetched 15.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2f4323o/r-cran-tensor_1.5-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 m4 amd64 1.4.19-7 [294 kB] Fetched 294 kB in 0s (25.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ll8v34c/m4_1.4.19-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-spatstat.univar amd64 3.1-2-1 [316 kB] Fetched 316 kB in 0s (29.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyvb8o7wo/r-cran-spatstat.univar_3.1-2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rcpphnsw amd64 0.6.0+ds-1 [169 kB] Fetched 169 kB in 0s (4125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzz8c69si/r-cran-rcpphnsw_0.6.0+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rspectra amd64 0.16-2-1 [427 kB] Fetched 427 kB in 0s (6480 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8yg1l5dp/r-cran-rspectra_0.16-2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Fetched 346 kB in 0s (32.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9qlj61i/libtiff6_4.7.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Fetched 326 kB in 0s (30.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp2c1e6s5/libkrb5-3_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7qft89ah/libxcb-render0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Fetched 24.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_w3255_s/libparams-util-perl_1.102-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB] Fetched 1113 kB in 0s (36.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg9svfmv/r-cran-mass_7.3-65-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB] Fetched 223 kB in 0s (6192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp175wqcix/r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ufr7ccr/libtirpc-common_1.3.6+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Fetched 1344 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpvofb38ql/g++_14.2.0-1_amd64.deb' Downloading dependency 130 of 509: r-cran-future.apply:amd64=1.11.3+dfsg-1 Downloading dependency 131 of 509: libasan8:amd64=14.2.0-19 Downloading dependency 132 of 509: libpng-dev:amd64=1.6.47-1.1 Downloading dependency 133 of 509: perl:amd64=5.40.1-2 Downloading dependency 134 of 509: r-cran-rlang:amd64=1.1.5-1 Downloading dependency 135 of 509: libacl1:amd64=2.3.2-2+b1 Downloading dependency 136 of 509: r-cran-fs:amd64=1.6.5+dfsg-1 Downloading dependency 137 of 509: libk5crypto3:amd64=1.21.3-5 Downloading dependency 138 of 509: libx11-6:amd64=2:1.8.12-1 Downloading dependency 139 of 509: libstdc++-14-dev:amd64=14.2.0-19 Downloading dependency 140 of 509: r-cran-cli:amd64=3.6.4-1 Downloading dependency 141 of 509: r-cran-rcpptoml:amd64=0.2.3+dfsg-1 Downloading dependency 142 of 509: xauth:amd64=1:1.1.2-1.1 Downloading dependency 143 of 509: r-cran-rcppeigen:amd64=0.3.4.0.2-1 Downloading dependency 144 of 509: libgfortran-14-dev:amd64=14.2.0-19 Downloading dependency 145 of 509: readline-common:amd64=8.2-6 Downloading dependency 146 of 509: libgcc-s1:amd64=14.2.0-19 Downloading dependency 147 of 509: libkrb5support0:amd64=1.21.3-5 Downloading dependency 148 of 509: sed:amd64=4.9-2 Downloading dependency 149 of 509: r-cran-lifecycle:amd64=1.0.4+dfsg-1 Downloading dependency 150 of 509: gcc-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 151 of 509: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 152 of 509: r-cran-lattice:amd64=0.22-7-1 Downloading dependency 153 of 509: r-cran-seuratobject:amd64=5.0.2-1 Downloading dependency 154 of 509: r-cran-kernsmooth:amd64=2.23-26-1 Downloading dependency 155 of 509: libjs-jquery-ui:amd64=1.13.2+dfsg-1 Downloading dependency 156 of 509: r-cran-png:amd64=0.1-8-1+b1 Downloading dependency 157 of 509: libnghttp2-14:amd64=1.64.0-1 Downloading dependency 158 of 509: libuuid1:amd64=2.41-3 Downloading dependency 159 of 509: grep:amd64=3.11-4 Downloading dependency 160 of 509: r-cran-matrix:amd64=1.7-3-1 Downloading dependency 161 of 509: libdebhelper-perl:amd64=13.24.2 Downloading dependency 162 of 509: libparams-classify-perl:amd64=0.015-2+b4 Downloading dependency 163 of 509: r-cran-here:amd64=1.0.1-2 Downloading dependency 164 of 509: file:amd64=1:5.46-4 Downloading dependency 165 of 509: gzip:amd64=1.13-1 Downloading dependency 166 of 509: patch:amd64=2.7.6-7 Downloading dependency 167 of 509: libtext-charwidth-perl:amd64=0.04-11+b4 Downloading dependency 168 of 509: r-cran-base64enc:amd64=0.1-3-3 Downloading dependency 169 of 509: libc-bin:amd64=2.41-6 Downloading dependency 170 of 509: libidn2-0:amd64=2.3.8-2 Downloading dependency 171 of 509: libpangocairo-1.0-0:amd64=1.56.3-1 Downloading dependency 172 of 509: libwebp7:amd64=1.5.0-0.1 Downloading dependency 173 of 509: libjs-highlight.js:amd64=9.18.5+dfsg1-2 Downloading dependency 174 of 509: r-cran-future:amd64=1.34.0+dfsg-1 Downloading dependency 175 of 509: openssl-provider-legacy:amd64=3.4.1-1 Downloading dependency 176 of 509: r-cran-spatstat.explore:amd64=3.3-4-1 Downloading dependency 177 of 509: fontconfig:amd64=2.15.0-2.2 Downloading dependency 178 of 509: r-cran-cowplot:amd64=1.1.3+dfsg-1 Downloading dependency 179 of 509: libgnutls30t64:amd64=3.8.9-2 Downloading dependency 180 of 509: libjs-jquery:amd64=3.6.1+dfsg+~3.5.14-1 Downloading dependency 181 of 509: liblua5.4-0:amd64=5.4.7-1+b2 Downloading dependency 182 of 509: libnuma1:amd64=2.0.18-1+b1 Downloading dependency 183 of 509: libblas-dev:amd64=3.12.1-2 Downloading dependency 184 of 509: openssl:amd64=3.4.1-1 Downloading dependency 185 of 509: g++-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 186 of 509: r-cran-spatstat.geom:amd64=3.3-6-1 Downloading dependency 187 of 509: libpcre2-32-0:amd64=10.45-1 Downloading dependency 188 of 509: libpackage-stash-xs-perl:amd64=0.30-1+b4 Downloading dependency 189 of 509: r-cran-tinytex:amd64=0.56-1 Downloading dependency 190 of 509: libjs-popper.js:amd64=1.16.1+ds-6 Downloading dependency 191 of 509: libpng16-16t64:amd64=1.6.47-1.1 Downloading dependency 192 of 509: libpcre2-dev:amd64=10.45-1 Downloading dependency 193 of 509: libjs-jquery-selectize.js:amd64=0.12.6+dfsg-1.1 Downloading dependency 194 of 509: r-cran-miniui:amd64=0.1.1.1-3 Downloading dependency 195 of 509: libjs-mathjax:amd64=2.7.9+dfsg-1 Downloading dependency 196 of 509: libpcre2-16-0:amd64=10.45-1 Downloading dependency 197 of 509: r-cran-isoband:amd64=0.2.7-1 Downloading dependency 198 of 509: r-cran-littler:amd64=0.3.21-1 Downloading dependency 199 of 509: libthai-data:amd64=0.1.29-2 Downloading dependency 200 of 509: zlib1g:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 201 of 509: liblsan0:amd64=14.2.0-19 Downloading dependency 202 of 509: libc6-dev:amd64=2.41-6 Downloading dependency 203 of 509: libuchardet0:amd64=0.0.8-1+b2 Downloading dependency 204 of 509: r-cran-utf8:amd64=1.2.4-1 Downloading dependency 205 of 509: libnghttp3-9:amd64=1.8.0-1 Downloading dependency 206 of 509: libsystemd0:amd64=257.4-9 Downloading dependency 207 of 509: libbrotli1:amd64=1.1.0-2+b7 Downloading dependency 208 of 509: r-cran-rprojroot:amd64=2.0.4-2 Downloading dependency 209 of 509: libdb5.3t64:amd64=5.3.28+dfsg2-9 Downloading dependency 210 of 509: libcrypt1:amd64=1:4.4.38-1 Downloading dependency 211 of 509: libcc1-0:amd64=14.2.0-19 Downloading dependency 212 of 509: fonts-glyphicons-halflings:amd64=1.009~3.4.1+dfsg-3 Downloading dependency 213 of 509: libtirpc3t64:amd64=1.3.6+ds-1 Downloading dependency 214 of 509: r-cran-rcppannoy:amd64=0.0.22-1 Downloading dependency 215 of 509: libblkid1:amd64=2.41-3 Downloading dependency 216 of 509: r-cran-parallelly:amd64=1.42.0-1 Downloading dependency 217 of 509: libtool:amd64=2.5.4-4 Downloading dependency 218 of 509: dpkg:amd64=1.22.18 Downloading dependency 219 of 509: libpam-modules:amd64=1.7.0-3 Downloading dependency 220 of 509: libvariable-magic-perl:amd64=0.64-1+b1 Downloading dependency 221 of 509: gettext-base:amd64=0.23.1-1 Downloading dependency 222 of 509: gfortran:amd64=4:14.2.0-1 Downloading dependency 223 of 509: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 224 of 509: libgfortran5:amd64=14.2.0-19 Downloading dependency 225 of 509: libcap2:amd64=1:2.75-4 Downloading dependency 226 of 509: r-cran-bslib:amd64=0.9.0+dfsg-1 Downloading dependency 227 of 509: pkgconf:amd64=1.8.1-4 Downloading dependency 228 of 509: r-cran-later:amd64=1.4.1+dfsg-1 Downloading dependency 229 of 509: r-cran-colorspace:amd64=2.1-1+dfsg-1 Downloading dependency 230 of 509: pkgconf-bin:amd64=1.8.1-4 Downloading dependency 231 of 509: libb-hooks-op-check-perl:amd64=0.22-3+b2 Downloading dependency 232 of 509: r-cran-openssl:amd64=2.3.2+dfsg-1 Downloading dependency 233 of 509: dwz:amd64=0.15-1+b1 Downloading dependency 234 of 509: libexpat1:amd64=2.7.1-1 Downloading dependency 235 of 509: icu-devtools:amd64=76.1-3 Downloading dependency 236 of 509: autoconf:amd64=2.72-3 Downloading dependency 237 of 509: fonts-dejavu-core:amd64=2.37-8 Downloading dependency 238 of 509: libtirpc-dev:amd64=1.3.6+ds-1 Downloading dependency 239 of 509: fonts-font-awesome:amd64=5.0.10+really4.7.0~dfsg-4.1 Downloading dependency 240 of 509: sysvinit-utils:amd64=3.14-4 Downloading dependency 241 of 509: libtsan2:amd64=14.2.0-19 Downloading dependency 242 of 509: r-cran-tensor:amd64=1.5-4 Downloading dependency 243 of 509: m4:amd64=1.4.19-7 Downloading dependency 244 of 509: r-cran-spatstat.univar:amd64=3.1-2-1 Downloading dependency 245 of 509: r-cran-rcpphnsw:amd64=0.6.0+ds-1 Downloading dependency 246 of 509: r-cran-rspectra:amd64=0.16-2-1 Downloading dependency 247 of 509: libtiff6:amd64=4.7.0-3 Downloading dependency 248 of 509: libkrb5-3:amd64=1.21.3-5 Downloading dependency 249 of 509: libxcb-render0:amd64=1.17.0-2+b1 Downloading dependency 250 of 509: libparams-util-perl:amd64=1.102-3+b1 Downloading dependency 251 of 509: r-cran-mass:amd64=7.3-65-1 Downloading dependency 252 of 509: r-cran-tidyselect:amd64=1.2.1+dfsg-1 Downloading dependency 253 of 509: libtirpc-common:amd64=1.3.6+ds-1 Downloading dependency 254 of 509: g++:amd64=4:14.2.0-1 Downloading dependency 255 of 509: cpp-x86-64-linux-gnu:amd64=4:14.2.0-1Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Fetched 4840 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpl1vp43vf/cpp-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Fetched 75.2 kB in 0s (7464 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7so_iju/libgdbm6t64_1.24-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 debianutils amd64 5.21 [92.1 kB] Fetched 92.1 kB in 0s (8502 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxsfm6no/debianutils_5.21_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Fetched 17.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7qqwqapn/libb-hooks-endofscope-perl_0.28-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Fetched 47.4 kB in 0s (4281 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4thx1jid/libjs-es5-shim_4.6.7-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 binutils-common amd64 2.44-3 [2509 kB] Fetched 2509 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmx4stfd9/binutils-common_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB] Fetched 51.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc86b2ru4/libseccomp2_2.6.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 linux-libc-dev all 6.12.21-1 [2542 kB] Fetched 2542 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyzhg7lk7/linux-libc-dev_6.12.21-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Fetched 20.4 kB in 0s (1666 kB/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpgj5skm7s/libxau6_1.0.11-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcurl4t64 amd64 8.13.0-1 [381 kB] Fetched 381 kB in 0s (9946 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe32a0atq/libcurl4t64_8.13.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Fetched 145 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzrtmcgz/libquadmath0_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-evaluate all 1.0.3-1 [114 kB] Fetched 114 kB in 0s (1291 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_tq5ya64/r-cran-evaluate_1.0.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-gtools amd64 3.9.5-1 [362 kB] Fetched 362 kB in 0s (1058 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd0l35fdk/r-cran-gtools_3.9.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Fetched 452 kB in 0s (37.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6k9bi93c/libfreetype6_2.13.3+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Fetched 5912 B in 0s (324 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprazjyy02/r-cran-bh_1.84.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB] Fetched 17.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78rimbn4/libcap-ng0_0.8.5-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Fetched 793 kB in 0s (56.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2jyva0b/libtk8.6_8.6.16-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Fetched 16.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7s4wkvk/libpaper2_2.2.5-0.3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Fetched 141 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj6x3kanz/mawk_1.3.4.20250131-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmpfr6 amd64 4.2.2-1 [729 kB] Fetched 729 kB in 0s (53.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8u18cnnt/libmpfr6_4.2.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Fetched 79.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps2xoirkr/libhttp-message-perl_7.00-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-base-dev all 4.4.3-1 [4352 B] Fetched 4352 B in 0s (318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcm78fdh2/r-base-dev_4.4.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-shiny all 1.10.0+dfsg-2 [3139 kB] Fetched 3139 kB in 0s (7908 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzrmxh1j/r-cran-shiny_1.10.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmoose-perl amd64 2.2207-1+b3 [766 kB] Fetched 766 kB in 0s (51.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr58d59i0/libmoose-perl_2.2207-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Fetched 10.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoi4ezjhh/libalgorithm-c3-perl_0.11-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx66t84f6/dctrl-tools_2.24-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19 [11.7 MB] Fetched 11.7 MB in 0s (140 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt67mux9y/gfortran-14-x86-64-linux-gnu_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Fetched 52.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5y19lw7d/libyaml-0-2_0.2.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Fetched 15.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1xjxrujj/libfile-which-perl_1.27-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-catools amd64 1.18.3-1 [207 kB] Fetched 207 kB in 0s (8689 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkfk3l036/r-cran-catools_1.18.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-cluster amd64 2.1.8.1-1 [585 kB] Fetched 585 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwko0hnde/r-cran-cluster_2.1.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libamd3 amd64 1:7.10.1+dfsg-1 [49.2 kB] Fetched 49.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libamd3_1%3a7.10.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmps58xu8na/libamd3_7.10.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-globals all 0.16.3-1 [120 kB] Fetched 120 kB in 0s (3914 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8z3htcl/r-cran-globals_0.16.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5_bkhocx/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpython3.13-stdlib amd64 3.13.2-3 [1952 kB] Fetched 1952 kB in 0s (91.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy27o68lh/libpython3.13-stdlib_3.13.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Fetched 20.0 kB in 0s (1019 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9fuediez/libjs-json_0~20221030+~1.0.8-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Fetched 7496 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92zlz234/libsub-exporter-progressive-perl_0.001013-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjfeduif6/libsub-name-perl_0.28-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Fetched 401 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjo032wlr/libglpk40_5.0-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Fetched 10.6 MB in 2s (5105 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzbfe37pt/libboost1.83-dev_1.83.0-4.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Fetched 119 kB in 0s (10.8 MB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppz1f77fz/libcrypt-dev_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libkeyutils1 amd64 1.6.3-5 [9316 B] Fetched 9316 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i4t1ym8/libkeyutils1_1.6.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 base-passwd amd64 3.6.7 [53.7 kB] Fetched 53.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp28vjfx3g/base-passwd_3.6.7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 javascript-common all 12 [5236 B] Fetched 5236 B in 0s (337 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphd683gk9/javascript-common_12_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-ggridges all 0.5.6-1 [2204 kB] Fetched 2204 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ws59g5n/r-cran-ggridges_0.5.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Fetched 1375 kB in 0s (32.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzlllcdx/r-cran-vctrs_0.6.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Fetched 72.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.1.5-3.1_amd64.deb' to '/srv/rebuilderd/tmp/tmpfeah6ie8/libjpeg-dev_2.1.5-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Fetched 72.2 kB in 0s (1825 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk91g6arx/r-cran-fastmap_1.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptfwzvmp7/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 zip amd64 3.0-14 [233 kB] Fetched 233 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ya9w8co/zip_3.0-14_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Fetched 2672 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeciv_h5_/libgcc-14-dev_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Fetched 7896 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7szmwzp2/libdevel-overloadinfo-perl_0.007-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Fetched 32.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc9a4_idx/libjbig0_2.1-6.1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Fetched 54.7 kB in 0s (2851 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6rs5mhtr/r-cran-rcolorbrewer_1.1-3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Fetched 183 kB in 0s (18.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpicq7oxm4/liblerc4_4.0.0+ds-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1473 kB] Fetched 1473 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoq12d4kc/r-cran-rmarkdown_2.29+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Fetched 44.4 kB in 0s (826 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx_8jvvgp/r-cran-sys_3.4.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg_7nr1sp/libmpc3_1.3.1-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rann amd64 2.6.2-1 [44.8 kB] Fetched 44.8 kB in 0s (3698 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3f5tzy7y/r-cran-rann_2.6.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-nlme amd64 3.1.168-1 [2329 kB] Fetched 2329 kB in 0s (59.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp00w78jf4/r-cran-nlme_3.1.168-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 xz-utils amd64 5.8.1-1 [660 kB] Fetched 660 kB in 0s (49.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi_qijacb/xz-utils_5.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Fetched 57.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprq9zik75/libpsl5t64_0.21.2-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsmartcols1 amd64 2.41-3 [142 kB] Fetched 142 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphgpjjvgg/libsmartcols1_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 bsdutils amd64 1:2.41-3 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: info: moved 'bsdutils_1%3a2.41-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp0kxqnus5/bsdutils_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Fetched 298 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4unx1luo/libpcre2-8-0_10.45-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Fetched 348 kB in 0s (33.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprvb17566/liblzma-dev_5.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-commonmark amd64 1.9.5-1 [123 kB] Fetched 123 kB in 0s (2929 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvqb94m1b/r-cran-commonmark_1.9.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 coreutils amd64 9.6-2 [2993 kB] Fetched 2993 kB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbuyu8w1/coreutils_9.6-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-reticulate amd64 1.41.0.1+dfsg-1 [1569 kB] Fetched 1569 kB in 0s (25.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplv72gdgh/r-cran-reticulate_1.41.0.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Fetched 189 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfpldk9vk/libelf1t64_0.192-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-fitdistrplus all 1.2-2-1 [2418 kB] Fetched 2418 kB in 0s (54.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphpshe2zj/r-cran-fitdistrplus_1.2-2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Fetched 131 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkew9tyzs/libngtcp2-16_1.11.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB] Fetched 292 kB in 0s (26.6 MB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.1.5-3.1_amd64.deb' to '/srv/rebuilderd/tmp/tmparlla6un/libjpeg62-turbo-dev_2.1.5-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-uwot amd64 0.2.3-1 [970 kB] Fetched 970 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2xmwem0/r-cran-uwot_0.2.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-htmltools amd64 0.5.8.1-1 [378 kB] Fetched 378 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd3w8ah67/r-cran-htmltools_0.5.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 util-linux amd64 2.41-3 [1231 kB] Fetched 1231 kB in 0s (72.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0dp8czdq/util-linux_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Fetched 1280 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqscfwwm7/cpp-14_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblapack-dev amd64 3.12.1-2 [4998 kB] Fetched 4998 kB in 0s (121 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphar5qu7t/liblapack-dev_3.12.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Fetched 17.6 kB in 0s (1695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1jzuhvd/libpackage-deprecationmanager-perl_0.18-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Fetched 191 kB in 0s (6771 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprhh7j_9n/libjs-modernizr_3.13.0-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Fetched 144 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ry0tv_1/libxcb1_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Fetched 16.2 kB in 0s (1608 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwx0g6yxu/libio-html-perl_1.004-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_75woeh6/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Fetched 27.9 kB in 0s (2739 kB/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpweprrewc/libxrender1_0.9.12-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-patchwork all 1.3.0-1 [3407 kB] Fetched 3407 kB in 1s (4640 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeniqbdcy/r-cran-patchwork_1.3.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-promises amd64 1.3.2+dfsg-1 [288 kB] Fetched 288 kB in 0s (8549 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp67yu7uct/r-cran-promises_1.3.2+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-zoo amd64 1.8-13-1 [1000 kB] Fetched 1000 kB in 0s (28.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz2h5xvge/r-cran-zoo_1.8-13-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Fetched 228 kB in 0s (20.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphr2vjcqu/r-cran-gtable_0.3.6+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-knitr all 1.50+dfsg-1 [843 kB] Fetched 843 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ac6tlbb/r-cran-knitr_1.50+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Fetched 169 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcerp1puu/libreadline8t64_8.2-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Fetched 57.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw6m1cimi/libsasl2-2_2.1.28+dfsg1-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgprofng0 amd64 2.44-3 [808 kB] Fetched 808 kB in 0s (58.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjtxsfu1c/libgprofng0_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Fetched 3836 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx7tabh79/libboost-dev_1.83.0.2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Fetched 20.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplo5la5n_/liblwp-mediatypes-perl_6.04-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Fetched 36.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo05rkf_b/libpkgconf3_1.8.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Fetched 1163 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmj1bvkmo/r-cran-tidyr_1.3.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkdyfqkmp/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdebconfclient0 amd64 0.278 [10.5 kB] Fetched 10.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu5i9tp8y/libdebconfclient0_0.278_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-igraph amd64 2.1.4-1 [5138 kB] Fetched 5138 kB in 0s (76.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj3llys5m/r-cran-igraph_2.1.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gfortran-14 amd64 14.2.0-19 [14.5 kB] Fetched 14.5 kB in 0s (460 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1_n8iy1b/gfortran-14_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Fetched 16.5 kB in 0s (258 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxkmz40zy/libpaper-utils_2.2.5-0.3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Fetched 194 kB in 0s (7850 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0gt78en8/libldap2_2.6.9+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Fetched 75.8 kB in 0s (5101 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp63kj7nlc/xdg-utils_1.2.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (198 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpzmdi6s6h/libattr1_2.5.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Fetched 29.3 kB in 0s (2875 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp67f0mej8/libngtcp2-crypto-gnutls8_1.11.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Fetched 41.7 kB in 1s (58.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmf9h5844/libjs-prettify_2015.12.04+dfsg-1.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Fetched 29.1 kB in 0s (1223 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbx1ldd7f/r-cran-pkgkitten_0.2.4-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rocr all 1.0-11-3 [457 kB] Fetched 457 kB in 1s (757 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp656c5lfy/r-cran-rocr_1.0-11-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Fetched 39.3 kB in 0s (217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppnvs90az/libtimedate-perl_2.3300-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libctf-nobfd0 amd64 2.44-3 [156 kB] Fetched 156 kB in 0s (7656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpus5lsit8/libctf-nobfd0_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Fetched 12.2 kB in 0s (139 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7qdes_t/libjs-sifter.js_0.6.0+dfsg-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-ggrepel amd64 0.9.6-1 [265 kB] Fetched 265 kB in 0s (907 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgzym_lx/r-cran-ggrepel_0.9.6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-shinyjs all 2.1.0-1 [1009 kB] Fetched 1009 kB in 1s (1526 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf66s3lsu/r-cran-shinyjs_2.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Fetched 24.2 kB in 0s (1515 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr6et44q9/r-cran-askpass_1.2.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Fetched 73.9 kB in 0s (3047 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpljt2ijyq/r-cran-cachem_1.1.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Fetched 353 kB in 0s (21.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgde40dri/libncurses-dev_6.5+20250216-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Fetched 248 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk3jdk4zi/libpixman-1-0_0.44.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-fontawesome all 0.5.3-1 [1311 kB] Fetched 1311 kB in 2s (857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ajin43h/r-cran-fontawesome_0.5.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Fetched 7356 B in 0s (301 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzb59g8ex/libmodule-runtime-conflicts-perl_0.003-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Fetched 878 kB in 0s (55.7 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-7_amd64.deb' to '/srv/rebuilderd/tmp/tmppyy7wq3x/procps_4.0.4-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Fetched 38.1 kB in 0s (3566 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb_j4u1bc/libdatrie1_0.2.13-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Fetched 22.5 kB in 0s (2227 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0lpx93uk/g++-14_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Fetched 62.4 kB in 0s (4109 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfo0o2c70/r-cran-labeling_0.4.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libfontconfig1 amd64 2.15.0-2.2 [391 kB] Fetched 391 kB in 0s (28.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbz9lq1m/libfontconfig1_2.15.0-2.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Fetched 3672 B in 0s (104 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppnou5guv/libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Fetched 19.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwfc1rack/libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libltdl7 amd64 2.5.4-4 [416 kB] Fetched 416 kB in 0s (8319 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphf35uhq4/libltdl7_2.5.4-4_amd64.deb' Downloading dependency 256 of 509: libgdbm6t64:amd64=1.24-2 Downloading dependency 257 of 509: debianutils:amd64=5.21 Downloading dependency 258 of 509: libb-hooks-endofscope-perl:amd64=0.28-1 Downloading dependency 259 of 509: libjs-es5-shim:amd64=4.6.7-2 Downloading dependency 260 of 509: binutils-common:amd64=2.44-3 Downloading dependency 261 of 509: libseccomp2:amd64=2.6.0-2 Downloading dependency 262 of 509: linux-libc-dev:amd64=6.12.21-1 Downloading dependency 263 of 509: libxau6:amd64=1:1.0.11-1 Downloading dependency 264 of 509: libcurl4t64:amd64=8.13.0-1 Downloading dependency 265 of 509: libquadmath0:amd64=14.2.0-19 Downloading dependency 266 of 509: r-cran-evaluate:amd64=1.0.3-1 Downloading dependency 267 of 509: r-cran-gtools:amd64=3.9.5-1 Downloading dependency 268 of 509: libfreetype6:amd64=2.13.3+dfsg-1 Downloading dependency 269 of 509: r-cran-bh:amd64=1.84.0-1 Downloading dependency 270 of 509: libcap-ng0:amd64=0.8.5-4+b1 Downloading dependency 271 of 509: libtk8.6:amd64=8.6.16-1 Downloading dependency 272 of 509: libpaper2:amd64=2.2.5-0.3+b2 Downloading dependency 273 of 509: mawk:amd64=1.3.4.20250131-1 Downloading dependency 274 of 509: libmpfr6:amd64=4.2.2-1 Downloading dependency 275 of 509: libhttp-message-perl:amd64=7.00-2 Downloading dependency 276 of 509: r-base-dev:amd64=4.4.3-1 Downloading dependency 277 of 509: r-cran-shiny:amd64=1.10.0+dfsg-2 Downloading dependency 278 of 509: libmoose-perl:amd64=2.2207-1+b3 Downloading dependency 279 of 509: libalgorithm-c3-perl:amd64=0.11-2 Downloading dependency 280 of 509: dctrl-tools:amd64=2.24-3+b1 Downloading dependency 281 of 509: gfortran-14-x86-64-linux-gnu:amd64=14.2.0-19 Downloading dependency 282 of 509: libyaml-0-2:amd64=0.2.5-2 Downloading dependency 283 of 509: libfile-which-perl:amd64=1.27-2 Downloading dependency 284 of 509: r-cran-catools:amd64=1.18.3-1 Downloading dependency 285 of 509: r-cran-cluster:amd64=2.1.8.1-1 Downloading dependency 286 of 509: libamd3:amd64=1:7.10.1+dfsg-1 Downloading dependency 287 of 509: r-cran-globals:amd64=0.16.3-1 Downloading dependency 288 of 509: po-debconf:amd64=1.0.21+nmu1 Downloading dependency 289 of 509: libpython3.13-stdlib:amd64=3.13.2-3 Downloading dependency 290 of 509: libjs-json:amd64=0~20221030+~1.0.8-1 Downloading dependency 291 of 509: libsub-exporter-progressive-perl:amd64=0.001013-3 Downloading dependency 292 of 509: libsub-name-perl:amd64=0.28-1 Downloading dependency 293 of 509: libglpk40:amd64=5.0-1+b2 Downloading dependency 294 of 509: libboost1.83-dev:amd64=1.83.0-4.2 Downloading dependency 295 of 509: libcrypt-dev:amd64=1:4.4.38-1 Downloading dependency 296 of 509: libkeyutils1:amd64=1.6.3-5 Downloading dependency 297 of 509: base-passwd:amd64=3.6.7 Downloading dependency 298 of 509: javascript-common:amd64=12 Downloading dependency 299 of 509: r-cran-ggridges:amd64=0.5.6-1 Downloading dependency 300 of 509: r-cran-vctrs:amd64=0.6.5-1 Downloading dependency 301 of 509: libjpeg-dev:amd64=1:2.1.5-3.1 Downloading dependency 302 of 509: r-cran-fastmap:amd64=1.2.0-1 Downloading dependency 303 of 509: ncurses-base:amd64=6.5+20250216-2 Downloading dependency 304 of 509: zip:amd64=3.0-14 Downloading dependency 305 of 509: libgcc-14-dev:amd64=14.2.0-19 Downloading dependency 306 of 509: libdevel-overloadinfo-perl:amd64=0.007-1 Downloading dependency 307 of 509: libjbig0:amd64=2.1-6.1+b2 Downloading dependency 308 of 509: r-cran-rcolorbrewer:amd64=1.1-3-1 Downloading dependency 309 of 509: liblerc4:amd64=4.0.0+ds-5 Downloading dependency 310 of 509: r-cran-rmarkdown:amd64=2.29+dfsg-1 Downloading dependency 311 of 509: r-cran-sys:amd64=3.4.3-1 Downloading dependency 312 of 509: libmpc3:amd64=1.3.1-1+b3 Downloading dependency 313 of 509: r-cran-rann:amd64=2.6.2-1 Downloading dependency 314 of 509: r-cran-nlme:amd64=3.1.168-1 Downloading dependency 315 of 509: xz-utils:amd64=5.8.1-1 Downloading dependency 316 of 509: libpsl5t64:amd64=0.21.2-1.1+b1 Downloading dependency 317 of 509: libsmartcols1:amd64=2.41-3 Downloading dependency 318 of 509: bsdutils:amd64=1:2.41-3 Downloading dependency 319 of 509: libpcre2-8-0:amd64=10.45-1 Downloading dependency 320 of 509: liblzma-dev:amd64=5.8.1-1 Downloading dependency 321 of 509: r-cran-commonmark:amd64=1.9.5-1 Downloading dependency 322 of 509: coreutils:amd64=9.6-2 Downloading dependency 323 of 509: r-cran-reticulate:amd64=1.41.0.1+dfsg-1 Downloading dependency 324 of 509: libelf1t64:amd64=0.192-4 Downloading dependency 325 of 509: r-cran-fitdistrplus:amd64=1.2-2-1 Downloading dependency 326 of 509: libngtcp2-16:amd64=1.11.0-1 Downloading dependency 327 of 509: libjpeg62-turbo-dev:amd64=1:2.1.5-3.1 Downloading dependency 328 of 509: r-cran-uwot:amd64=0.2.3-1 Downloading dependency 329 of 509: r-cran-htmltools:amd64=0.5.8.1-1 Downloading dependency 330 of 509: util-linux:amd64=2.41-3 Downloading dependency 331 of 509: cpp-14:amd64=14.2.0-19 Downloading dependency 332 of 509: liblapack-dev:amd64=3.12.1-2 Downloading dependency 333 of 509: libpackage-deprecationmanager-perl:amd64=0.18-1 Downloading dependency 334 of 509: libjs-modernizr:amd64=3.13.0-0.1 Downloading dependency 335 of 509: libxcb1:amd64=1.17.0-2+b1 Downloading dependency 336 of 509: libio-html-perl:amd64=1.004-3 Downloading dependency 337 of 509: media-types:amd64=13.0.0 Downloading dependency 338 of 509: libxrender1:amd64=1:0.9.12-1 Downloading dependency 339 of 509: r-cran-patchwork:amd64=1.3.0-1 Downloading dependency 340 of 509: r-cran-promises:amd64=1.3.2+dfsg-1 Downloading dependency 341 of 509: r-cran-zoo:amd64=1.8-13-1 Downloading dependency 342 of 509: r-cran-gtable:amd64=0.3.6+dfsg-1 Downloading dependency 343 of 509: r-cran-knitr:amd64=1.50+dfsg-1 Downloading dependency 344 of 509: libreadline8t64:amd64=8.2-6 Downloading dependency 345 of 509: libsasl2-2:amd64=2.1.28+dfsg1-9 Downloading dependency 346 of 509: libgprofng0:amd64=2.44-3 Downloading dependency 347 of 509: libboost-dev:amd64=1.83.0.2+b2 Downloading dependency 348 of 509: liblwp-mediatypes-perl:amd64=6.04-2 Downloading dependency 349 of 509: libpkgconf3:amd64=1.8.1-4 Downloading dependency 350 of 509: r-cran-tidyr:amd64=1.3.1-1 Downloading dependency 351 of 509: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 352 of 509: libdebconfclient0:amd64=0.278 Downloading dependency 353 of 509: r-cran-igraph:amd64=2.1.4-1 Downloading dependency 354 of 509: gfortran-14:amd64=14.2.0-19 Downloading dependency 355 of 509: libpaper-utils:amd64=2.2.5-0.3+b2 Downloading dependency 356 of 509: libldap2:amd64=2.6.9+dfsg-2 Downloading dependency 357 of 509: xdg-utils:amd64=1.2.1-2 Downloading dependency 358 of 509: libattr1:amd64=1:2.5.2-3 Downloading dependency 359 of 509: libngtcp2-crypto-gnutls8:amd64=1.11.0-1 Downloading dependency 360 of 509: libjs-prettify:amd64=2015.12.04+dfsg-1.1 Downloading dependency 361 of 509: r-cran-pkgkitten:amd64=0.2.4-1 Downloading dependency 362 of 509: r-cran-rocr:amd64=1.0-11-3 Downloading dependency 363 of 509: libtimedate-perl:amd64=2.3300-2 Downloading dependency 364 of 509: libctf-nobfd0:amd64=2.44-3 Downloading dependency 365 of 509: libjs-sifter.js:amd64=0.6.0+dfsg-3 Downloading dependency 366 of 509: r-cran-ggrepel:amd64=0.9.6-1 Downloading dependency 367 of 509: r-cran-shinyjs:amd64=2.1.0-1 Downloading dependency 368 of 509: r-cran-askpass:amd64=1.2.1-1 Downloading dependency 369 of 509: r-cran-cachem:amd64=1.1.0-1 Downloading dependency 370 of 509: libncurses-dev:amd64=6.5+20250216-2 Downloading dependency 371 of 509: libpixman-1-0:amd64=0.44.0-3 Downloading dependency 372 of 509: r-cran-fontawesome:amd64=0.5.3-1 Downloading dependency 373 of 509: libmodule-runtime-conflicts-perl:amd64=0.003-2 Downloading dependency 374 of 509: procps:amd64=2:4.0.4-7 Downloading dependency 375 of 509: libdatrie1:amd64=0.2.13-3+b1 Downloading dependency 376 of 509: g++-14:amd64=14.2.0-19 Downloading dependency 377 of 509: r-cran-labeling:amd64=0.4.3-1 Downloading dependency 378 of 509: libfontconfig1:amd64=2.15.0-2.2 Downloading dependency 379 of 509: libjs-microplugin.js:amd64=0.0.3+dfsg-1.1 Downloading dependency 380 of 509: libsasl2-modules-db:amd64=2.1.28+dfsg1-9 Downloading dependency 381 of 509: libltdl7:amd64=2.5.4-4 Downloading dependency 382 of 509: r-cran-mime:amd64=0.12-2Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Fetched 35.6 kB in 0s (295 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg9qxpfkp/r-cran-mime_0.12-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Fetched 27.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp5a9gubgy/libxdmcp6_1.1.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Fetched 15.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2k3go93f/libclass-load-perl_0.25-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-gdata all 3.0.1-1 [509 kB] Fetched 509 kB in 1s (848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwrta4ej4/r-cran-gdata_3.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-gplots all 3.2.0-1 [501 kB] Fetched 501 kB in 1s (402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_xk207_j/r-cran-gplots_3.2.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Fetched 2452 kB in 0s (78.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcmdffhky/liblapack3_3.12.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Fetched 11.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxzwwd02/libmro-compat-perl_0.15-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-polyclip amd64 1.10-7-1 [113 kB] Fetched 113 kB in 0s (4796 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg5e3q_io/r-cran-polyclip_1.10-7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Fetched 22.0 kB in 0s (77.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfv6ljqwf/libpackage-stash-perl_0.40-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 ncurses-bin amd64 6.5+20250216-2 [438 kB] Fetched 438 kB in 0s (33.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1jje75sd/ncurses-bin_6.5+20250216-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Fetched 11.0 MB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe1y_jorw/cpp-14-x86-64-linux-gnu_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Fetched 560 kB in 0s (34.4 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpcj77zku7/libgmp10_6.3.0+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Fetched 20.3 kB in 0s (1378 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1i0lt87o/libswitch-perl_2.17-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [175 kB] Fetched 175 kB in 0s (996 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0j1_9ufz/r-cran-crosstalk_1.2.1+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Fetched 1488 kB in 0s (4780 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7zsnrgwb/libhwasan0_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Fetched 517 kB in 1s (789 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw6cwfvot/libjs-bootstrap4_4.6.1+dfsg1-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [218 kB] Fetched 218 kB in 0s (6387 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp477y_thu/r-cran-spatstat.sparse_3.1-0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-fastdummies all 1.7.5-1 [50.5 kB] Fetched 50.5 kB in 0s (157 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoohckls3/r-cran-fastdummies_1.7.5-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB] Fetched 108 kB in 1s (122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3m1ict93/r-cran-yaml_2.3.10-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Fetched 28.1 kB in 0s (636 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9rnh_9lc/python3_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Fetched 135 kB in 0s (3967 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7h76pyqq/libncursesw6_6.5+20250216-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Fetched 540 kB in 0s (8632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptoi3imj4/gcc-14_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Fetched 106 kB in 0s (334 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbvp2xay/r-cran-r6_2.6.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB] Fetched 56.0 kB in 0s (602 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz901kf22/libdeflate-dev_1.23-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Fetched 21.4 MB in 1s (25.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzls_l88f/gcc-14-x86-64-linux-gnu_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Fetched 689 kB in 1s (1154 kB/s) dpkg-name: info: moved 'r-cran-xtable_1%3a1.8-4-2_all.deb' to '/srv/rebuilderd/tmp/tmpzlo7d_vc/r-cran-xtable_1.8-4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Fetched 1024 kB in 1s (1660 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjjsk_wwp/r-cran-gridextra_2.3-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gettext amd64 0.23.1-1 [1680 kB] Fetched 1680 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_qi0abje/gettext_0.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-scattermore amd64 1.2-1 [328 kB] Fetched 328 kB in 1s (545 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzpzag_7i/r-cran-scattermore_1.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Fetched 114 kB in 0s (1038 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_20lazh8/r-cran-reshape2_1.4.4-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-leidenbase amd64 0.1.32-1 [2308 kB] Fetched 2308 kB in 3s (855 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0hfhjxna/r-cran-leidenbase_0.1.32-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpython3.13-minimal amd64 3.13.2-3 [861 kB] Fetched 861 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppu0esupu/libpython3.13-minimal_3.13.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (59.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq0bfbz1d/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libctf0 amd64 2.44-3 [88.6 kB] Fetched 88.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7xqc5xhp/libctf0_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Fetched 10.7 kB in 0s (923 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoo0rgw09/libhttp-date-perl_6.06-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Fetched 116 kB in 0s (4075 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphj44wvxk/libsharpyuv0_1.5.0-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libisl23 amd64 0.27-1 [659 kB] Fetched 659 kB in 0s (40.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbsabirfe/libisl23_0.27-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Fetched 459 kB in 1s (386 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qdd7wh6/pandoc-data_3.1.11.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libudev1 amd64 257.4-9 [151 kB] Fetched 151 kB in 0s (6234 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy5ae8_oa/libudev1_257.4-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Fetched 49.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpclb0d94p/gcc-14-base_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rcpp amd64 1.0.14-1 [2080 kB] Fetched 2080 kB in 1s (2748 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprpja4tel/r-cran-rcpp_1.0.14-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libcolamd3 amd64 1:7.10.1+dfsg-1 [41.0 kB] Fetched 41.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libcolamd3_1%3a7.10.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0lqrss9m/libcolamd3_7.10.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Fetched 13.2 kB in 0s (343 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsscobv54/node-html5shiv_3.7.3+dfsg-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] Fetched 112 kB in 0s (2243 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe5ywj0va/r-cran-listenv_0.9.1+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-sitmo amd64 2.0.2-1+b1 [130 kB] Fetched 130 kB in 0s (5532 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4dp1yt7x/r-cran-sitmo_2.0.2-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Fetched 65.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libice6_2%3a1.1.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp08wepcly/libice6_1.1.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-sctransform amd64 0.4.1-1 [499 kB] Fetched 499 kB in 0s (7678 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5dbww0ez/r-cran-sctransform_0.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libunistring5 amd64 1.3-2 [477 kB] Fetched 477 kB in 0s (39.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_jj5kqxa/libunistring5_1.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Fetched 47.4 kB in 0s (565 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2t1da2sc/r-cran-rappdirs_0.3.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-irlba amd64 2.3.5.1-4 [296 kB] Fetched 296 kB in 0s (688 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ykpfirt/r-cran-irlba_2.3.5.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 dash amd64 0.5.12-12 [98.5 kB] Fetched 98.5 kB in 0s (6892 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpix568o59/dash_0.5.12-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 dh-r all 20241218 [42.5 kB] Fetched 42.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp29koun8i/dh-r_20241218_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Fetched 1284 B in 0s (0 B/s) dpkg-name: info: moved 'gfortran-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpsyzft_6z/gfortran-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 python3.13 amd64 3.13.2-3 [746 kB] Fetched 746 kB in 0s (3644 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp82joa5e9/python3.13_3.13.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkeeyzhwc/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Fetched 12.9 kB in 0s (1272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy70i0ojw/libencode-locale-perl_1.05-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Fetched 81.4 kB in 0s (2826 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_glftq5j/r-cran-generics_0.1.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 liblzma5 amd64 5.8.1-1 [309 kB] Fetched 309 kB in 0s (24.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7dizca_c/liblzma5_5.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Fetched 154 kB in 0s (14.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpewvuw0hh/libuv1t64_1.50.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rcppprogress all 0.4.2-2 [21.8 kB] Fetched 21.8 kB in 0s (466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvue45ku_/r-cran-rcppprogress_0.4.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (36.6 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpeg7ltosa/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Fetched 206 kB in 0s (702 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvu5ee69_/r-cran-digest_0.6.37-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] Fetched 453 kB in 0s (2506 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpto4vqslg/r-cran-pillar_1.10.1+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB] Fetched 493 kB in 0s (1157 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp12o589g_/r-cran-httpuv_1.6.15+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB] Fetched 55.6 kB in 0s (1988 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw9a1_xqd/libpangoft2-1.0-0_1.56.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Fetched 17.0 kB in 0s (1670 kB/s) dpkg-name: info: moved 'libxss1_1%3a1.2.3-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmpvurkjs1q/libxss1_1.2.3-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Fetched 68.1 kB in 0s (3140 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuhhfywrn/r-cran-abind_1.4-8-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Fetched 37.3 kB in 0s (2845 kB/s) dpkg-name: info: moved 'libsm6_2%3a1.2.6-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpql2c4aqj/libsm6_1.2.6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Fetched 1411 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp929u5vlj/r-cran-farver_2.1.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB] Fetched 425 kB in 0s (1622 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf45zlx2k/r-cran-tibble_3.2.1+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Fetched 2210 kB in 0s (54.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ydbn0fq/fonts-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Fetched 144 kB in 0s (5803 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3hfwahoq/libjs-jquery-datatables_1.11.5+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-lmtest amd64 0.9.40-1 [399 kB] Fetched 399 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4p9ltec/r-cran-lmtest_0.9.40-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (995 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkfyg4i8r/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 x11-common all 1:7.7+24 [217 kB] Fetched 217 kB in 0s (16.1 MB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+24_all.deb' to '/srv/rebuilderd/tmp/tmp3799egnj/x11-common_7.7+24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (807 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpy4ujmj_g/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Fetched 677 kB in 0s (6677 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp19ewxhjn/r-cran-scales_1.3.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-stringi amd64 1.8.4-1+b1 [896 kB] Fetched 896 kB in 1s (980 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdobpejjs/r-cran-stringi_1.8.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsuitesparseconfig7 amd64 1:7.10.1+dfsg-1 [32.3 kB] Fetched 32.3 kB in 0s (3161 kB/s) dpkg-name: info: moved 'libsuitesparseconfig7_1%3a7.10.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmplmu8ywfv/libsuitesparseconfig7_7.10.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Fetched 58.8 kB in 0s (5208 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprfj5ic_3/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Fetched 36.3 kB in 0s (2183 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11zqus4u/libmd0_1.1.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Fetched 16.2 kB in 0s (1581 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpklj2244p/libdevel-callchecker-perl_0.009-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [133 kB] Fetched 133 kB in 0s (6739 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppab8i_da/r-cran-dqrng_0.3.2+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Fetched 12.6 kB in 0s (477 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkgxczmux/libmodule-implementation-perl_0.09-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 unzip amd64 6.0-29 [173 kB] Fetched 173 kB in 0s (3605 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpva423yqj/unzip_6.0-29_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Fetched 54.5 kB in 0s (1650 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxpsokr9/libxft2_2.3.6-1+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3 [1014 kB] Fetched 1014 kB in 0s (20.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzbjwbiso/binutils-x86-64-linux-gnu_2.44-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Fetched 13.1 kB in 0s (214 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6v_vs4xi/r-cran-jquerylib_0.1.4+dfsg-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Fetched 168 kB in 0s (13.8 MB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-3.1_amd64.deb' to '/srv/rebuilderd/tmp/tmpshpolil4/libjpeg62-turbo_2.1.5-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Fetched 343 kB in 0s (15.8 MB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.12-1_all.deb' to '/srv/rebuilderd/tmp/tmpu5jw8xux/libx11-data_1.8.12-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Fetched 10.5 kB in 0s (406 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5rc7lhaa/libdist-checkconflicts-perl_0.11-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-spam amd64 2.11-1-1 [2742 kB] Fetched 2742 kB in 1s (3690 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm82kqsb9/r-cran-spam_2.11-1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (8491 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfdavb_ry/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Fetched 10.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_3uvxwu/libdata-optlist-perl_0.114-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Fetched 137 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw19e5hii/libgomp1_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Fetched 50.6 kB in 0s (1317 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7fgto522/libsub-exporter-perl_0.990-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 bsdextrautils amd64 2.41-3 [94.4 kB] Fetched 94.4 kB in 0s (4068 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpitgpoom8/bsdextrautils_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (2170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp83nuvv0v/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Fetched 75.4 kB in 0s (5116 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp115a_c3o/libgraphite2-3_1.3.14-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Fetched 49.4 kB in 0s (2201 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoh8h8rcf/libthai0_0.1.29-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libicu76 amd64 76.1-3 [9721 kB] Fetched 9721 kB in 0s (87.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyzm61h7q/libicu76_76.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 base-files amd64 13.7 [73.0 kB] Fetched 73.0 kB in 0s (6908 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl8shsub8/base-files_13.7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Fetched 201 kB in 0s (4079 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcq6wcvso/r-cran-magrittr_2.0.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Fetched 714 kB in 0s (38.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_v5tmfa/libstdc++6_14.2.0-19_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Fetched 49.9 kB in 0s (4533 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg3nts0m6/libtasn1-6_4.20.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB] Fetched 348 kB in 0s (23.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppgwxv4qj/libtinfo6_6.5+20250216-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Fetched 32.1 kB in 0s (1649 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbin72wfi/libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Fetched 138 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphsr0tx3j/libgssapi-krb5-2_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Fetched 160 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01kqe6dy/libblas3_3.12.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-progressr all 0.15.1-1 [352 kB] Fetched 352 kB in 0s (6291 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp66sowzro/r-cran-progressr_0.15.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-rcpparmadillo amd64 14.4.1-1-1 [868 kB] Fetched 868 kB in 1s (1059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_anb_psh/r-cran-rcpparmadillo_14.4.1-1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-sass amd64 0.4.9+dfsg-1 [965 kB] Fetched 965 kB in 2s (611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt8dnzt8a/r-cran-sass_0.4.9+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 fontconfig-config amd64 2.15.0-2.2 [318 kB] Fetched 318 kB in 0s (2424 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6n56hdy_/fontconfig-config_2.15.0-2.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Fetched 105 kB in 0s (414 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9gkh3yiv/libxcb-shm0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Fetched 12.7 kB in 0s (34.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2nock4wp/node-normalize.css_8.0.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libreadline-dev amd64 8.2-6 [153 kB] Fetched 153 kB in 0s (4292 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvkrfwf_q/libreadline-dev_8.2-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 dpkg-dev all 1.22.18 [1338 kB] Fetched 1338 kB in 0s (9976 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfj483i4z/dpkg-dev_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Fetched 47.5 kB in 0s (706 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0352kw6j/libdeflate0_1.23-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Fetched 1042 kB in 0s (4476 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj21oge2i/libtcl8.6_8.6.16+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-crayon all 1.5.3-1 [165 kB] Fetched 165 kB in 0s (3251 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp03y2b1ll/r-cran-crayon_1.5.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Fetched 31.4 kB in 0s (298 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24_bxrkv/libbz2-dev_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (306 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4d8ckkne/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 python3.13-minimal amd64 3.13.2-3 [2212 kB] Fetched 2212 kB in 0s (5204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfl8ivoap/python3.13-minimal_3.13.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 tzdata all 2025b-1 [259 kB] Fetched 259 kB in 0s (2441 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8vtt4c6c/tzdata_2025b-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 r-cran-xfun amd64 0.51+dfsg-1 [575 kB] Fetched 575 kB in 1s (416 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8um2whgz/r-cran-xfun_0.51+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Fetched 815 kB in 0s (4502 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31mrwuev/tar_1.35+dfsg-3.1_amd64.deb' Downloading dependency 383 of 509: libxdmcp6:amd64=1:1.1.5-1 Downloading dependency 384 of 509: libclass-load-perl:amd64=0.25-2 Downloading dependency 385 of 509: r-cran-gdata:amd64=3.0.1-1 Downloading dependency 386 of 509: r-cran-gplots:amd64=3.2.0-1 Downloading dependency 387 of 509: liblapack3:amd64=3.12.1-2 Downloading dependency 388 of 509: libmro-compat-perl:amd64=0.15-2 Downloading dependency 389 of 509: r-cran-polyclip:amd64=1.10-7-1 Downloading dependency 390 of 509: libpackage-stash-perl:amd64=0.40-1 Downloading dependency 391 of 509: ncurses-bin:amd64=6.5+20250216-2 Downloading dependency 392 of 509: cpp-14-x86-64-linux-gnu:amd64=14.2.0-19 Downloading dependency 393 of 509: libgmp10:amd64=2:6.3.0+dfsg-3 Downloading dependency 394 of 509: libswitch-perl:amd64=2.17-3 Downloading dependency 395 of 509: r-cran-crosstalk:amd64=1.2.1+dfsg-1 Downloading dependency 396 of 509: libhwasan0:amd64=14.2.0-19 Downloading dependency 397 of 509: libjs-bootstrap4:amd64=4.6.1+dfsg1-4 Downloading dependency 398 of 509: r-cran-spatstat.sparse:amd64=3.1-0-1 Downloading dependency 399 of 509: r-cran-fastdummies:amd64=1.7.5-1 Downloading dependency 400 of 509: r-cran-yaml:amd64=2.3.10-1 Downloading dependency 401 of 509: python3:amd64=3.13.2-2 Downloading dependency 402 of 509: libncursesw6:amd64=6.5+20250216-2 Downloading dependency 403 of 509: gcc-14:amd64=14.2.0-19 Downloading dependency 404 of 509: r-cran-r6:amd64=2.6.1-1 Downloading dependency 405 of 509: libdeflate-dev:amd64=1.23-1+b1 Downloading dependency 406 of 509: gcc-14-x86-64-linux-gnu:amd64=14.2.0-19 Downloading dependency 407 of 509: r-cran-xtable:amd64=1:1.8-4-2 Downloading dependency 408 of 509: r-cran-gridextra:amd64=2.3-3 Downloading dependency 409 of 509: gettext:amd64=0.23.1-1 Downloading dependency 410 of 509: r-cran-scattermore:amd64=1.2-1 Downloading dependency 411 of 509: r-cran-reshape2:amd64=1.4.4-2 Downloading dependency 412 of 509: r-cran-leidenbase:amd64=0.1.32-1 Downloading dependency 413 of 509: libpython3.13-minimal:amd64=3.13.2-3 Downloading dependency 414 of 509: autopoint:amd64=0.23.1-1 Downloading dependency 415 of 509: libctf0:amd64=2.44-3 Downloading dependency 416 of 509: libhttp-date-perl:amd64=6.06-1 Downloading dependency 417 of 509: libsharpyuv0:amd64=1.5.0-0.1 Downloading dependency 418 of 509: libisl23:amd64=0.27-1 Downloading dependency 419 of 509: pandoc-data:amd64=3.1.11.1-3 Downloading dependency 420 of 509: libudev1:amd64=257.4-9 Downloading dependency 421 of 509: gcc-14-base:amd64=14.2.0-19 Downloading dependency 422 of 509: r-cran-rcpp:amd64=1.0.14-1 Downloading dependency 423 of 509: libcolamd3:amd64=1:7.10.1+dfsg-1 Downloading dependency 424 of 509: node-html5shiv:amd64=3.7.3+dfsg-5 Downloading dependency 425 of 509: r-cran-listenv:amd64=0.9.1+dfsg-1 Downloading dependency 426 of 509: r-cran-sitmo:amd64=2.0.2-1+b1 Downloading dependency 427 of 509: libice6:amd64=2:1.1.1-1 Downloading dependency 428 of 509: r-cran-sctransform:amd64=0.4.1-1 Downloading dependency 429 of 509: libunistring5:amd64=1.3-2 Downloading dependency 430 of 509: r-cran-rappdirs:amd64=0.3.3-1 Downloading dependency 431 of 509: r-cran-irlba:amd64=2.3.5.1-4 Downloading dependency 432 of 509: dash:amd64=0.5.12-12 Downloading dependency 433 of 509: dh-r:amd64=20241218 Downloading dependency 434 of 509: gfortran-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 435 of 509: python3.13:amd64=3.13.2-3 Downloading dependency 436 of 509: init-system-helpers:amd64=1.68 Downloading dependency 437 of 509: libencode-locale-perl:amd64=1.05-3 Downloading dependency 438 of 509: r-cran-generics:amd64=0.1.3-1 Downloading dependency 439 of 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(2445 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpztw0aon6/libfribidi0_1.0.16-1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpy143pksw/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.Inm3iik2uv as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.Inm3iik2uv 127.0.0.1 - - [19/Jun/2025 15:07:32] code 404, message File not found 127.0.0.1 - - [19/Jun/2025 15:07:32] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:34105 ./ InRelease 127.0.0.1 - - [19/Jun/2025 15:07:32] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:34105 ./ Release [462 B] 127.0.0.1 - - [19/Jun/2025 15:07:32] code 404, message File not found 127.0.0.1 - - [19/Jun/2025 15:07:32] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:34105 ./ Release.gpg 127.0.0.1 - - [19/Jun/2025 15:07:32] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:34105 ./ Packages [636 kB] Fetched 636 kB in 0s (22.0 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.Inm3iik2uv 127.0.0.1 - - [19/Jun/2025 15:07:35] code 404, message File not found 127.0.0.1 - - [19/Jun/2025 15:07:35] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:34105 ./ InRelease 127.0.0.1 - - [19/Jun/2025 15:07:35] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:34105 ./ Release 127.0.0.1 - - [19/Jun/2025 15:07:35] code 404, message File not found 127.0.0.1 - - [19/Jun/2025 15:07:35] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:34105 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-uwot_0.2.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-patchwork_1.3.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-zoo_1.8-13-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-igraph_2.1.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-gdata_3.0.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-gplots_3.2.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-rocr_1.0-11-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-ggrepel_0.9.6-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./libswitch-perl_2.17-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-fastdummies_1.7.5-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-gridextra_2.3-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-scattermore_1.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-reshape2_1.4.4-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-leidenbase_0.1.32-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-rcpparmadillo_14.4.1-1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-sctransform_0.4.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./dh-r_20241218_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./r-cran-lmtest_0.9.40-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Jun/2025 15:08:00] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpy143pksw/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.Inm3iik2uv Reading package lists... Building dependency tree... Reading state information... libeval-closure-perl is already the newest version (0.14-3). libeval-closure-perl set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. libc-dev-bin is already the newest version (2.41-6). libc-dev-bin set to manually installed. libffi8 is already the newest version (3.4.7-1). libffi8 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. r-cran-sourcetools is already the newest version (0.1.7-1-1). r-cran-sourcetools set to manually installed. libncurses6 is already the newest version (6.5+20250216-2). libncurses6 set to manually installed. groff-base is already the newest version (1.23.0-7). groff-base set to manually installed. libtext-wrapi18n-perl is already the newest version (0.06-10). libtext-wrapi18n-perl set to manually installed. libpam-runtime is already the newest version (1.7.0-3). libwww-curl-simple-perl is already the newest version (0.100191-3). libwww-curl-simple-perl set to manually installed. r-cran-bitops is already the newest version (1.0-9-1). r-cran-bitops set to manually installed. r-cran-dotcall64 is already the newest version (1.2-1). r-cran-dotcall64 set to manually installed. r-cran-sp is already the newest version (1:2.2-0+dfsg-1). r-cran-sp set to manually installed. r-cran-spatstat.data is already the newest version (3.1-6-1). r-cran-spatstat.data set to manually installed. libjs-d3 is already the newest version (3.5.17-4). libjs-d3 set to manually installed. r-cran-withr is already the newest version (3.0.2+dfsg-1). r-cran-withr set to manually installed. r-cran-colourpicker is already the newest version (1.3.0+dfsg-1). r-cran-colourpicker set to manually installed. r-cran-goftest is already the newest version (1.2-3-1+b1). r-cran-goftest set to manually installed. libxt6t64 is already the newest version (1:1.2.1-1.2+b2). libxt6t64 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-1). libdevel-globaldestruction-perl is already the newest version (0.14-4). libdevel-globaldestruction-perl set to manually installed. libdevel-stacktrace-perl is already the newest version (2.0500-1). libdevel-stacktrace-perl set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libpango-1.0-0 is already the newest version (1.56.3-1). libpango-1.0-0 set to manually installed. libglib2.0-0t64 is already the newest version (2.84.1-1). libglib2.0-0t64 set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. r-cran-pbapply is already the newest version (1.7-2-1). r-cran-pbapply set to manually installed. g++-14-x86-64-linux-gnu is already the newest version (14.2.0-19). g++-14-x86-64-linux-gnu set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b2). libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.4). libxml2 set to manually installed. liburi-perl is already the newest version (5.30-1). liburi-perl set to manually installed. libmagic-mgc is already the newest version (1:5.46-4). libmagic-mgc set to manually installed. r-cran-data.table is already the newest version (1.17.0+dfsg-1). r-cran-data.table set to manually installed. r-cran-htmlwidgets is already the newest version (1.6.4+dfsg-1). r-cran-htmlwidgets set to manually installed. libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. r-cran-lazyeval is already the newest version (0.2.2-1+b1). r-cran-lazyeval set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. ca-certificates is already the newest version (20241223). ca-certificates set to manually installed. libmount1 is already the newest version (2.41-3). r-cran-curl is already the newest version (6.2.1+dfsg-1). r-cran-curl set to manually installed. libmagic1t64 is already the newest version (1:5.46-4). libmagic1t64 set to manually installed. libubsan1 is already the newest version (14.2.0-19). libubsan1 set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. libharfbuzz0b is already the newest version (10.2.0-1+b1). libharfbuzz0b set to manually installed. libperl5.40 is already the newest version (5.40.1-2). libperl5.40 set to manually installed. liblastlog2-2 is already the newest version (2.41-3). r-cran-survival is already the newest version (3.8-3-1). r-cran-survival set to manually installed. bash is already the newest version (5.2.37-1.1+b2). r-cran-jsonlite is already the newest version (1.9.1+dfsg-1). r-cran-jsonlite set to manually installed. libbinutils is already the newest version (2.44-3). libbinutils set to manually installed. r-cran-rtsne is already the newest version (0.17-1). r-cran-rtsne set to manually installed. libnettle8t64 is already the newest version (3.10.1-1). libnettle8t64 set to manually installed. r-cran-fnn is already the newest version (1.1.4.1-1). r-cran-fnn set to manually installed. libitm1 is already the newest version (14.2.0-19). libitm1 set to manually installed. libpam0g is already the newest version (1.7.0-3). libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libatomic1 is already the newest version (14.2.0-19). libatomic1 set to manually installed. r-cran-fansi is already the newest version (1.0.6-1). r-cran-fansi set to manually installed. littler is already the newest version (0.3.21-1). littler set to manually installed. libcom-err2 is already the newest version (1.47.2-1+b1). libcom-err2 set to manually installed. python3-minimal is already the newest version (3.13.2-2). python3-minimal set to manually installed. hostname is already the newest version (3.25). libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. r-cran-deldir is already the newest version (2.0-4-1). r-cran-deldir set to manually installed. libmodule-runtime-perl is already the newest version (0.016-2). libmodule-runtime-perl set to manually installed. libpcre2-posix3 is already the newest version (10.45-1). libpcre2-posix3 set to manually installed. binutils is already the newest version (2.44-3). binutils set to manually installed. libc6 is already the newest version (2.41-6). r-cran-purrr is already the newest version (1.0.4-1). r-cran-purrr set to manually installed. libsub-identify-perl is already the newest version (0.14-3+b3). libsub-identify-perl set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libxmuu1 is already the newest version (2:1.1.3-3+b4). libxmuu1 set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b3). libxext6 set to manually installed. libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. r-cran-highr is already the newest version (0.11+dfsg-1). r-cran-highr set to manually installed. r-cran-httr is already the newest version (1.4.7+dfsg-1). r-cran-httr set to manually installed. libcairo2 is already the newest version (1.18.4-1+b1). libcairo2 set to manually installed. libclass-c3-perl is already the newest version (0.35-2). libclass-c3-perl set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. r-cran-memoise is already the newest version (2.0.1-1). r-cran-memoise set to manually installed. libpam-modules-bin is already the newest version (1.7.0-3). libproc2-0 is already the newest version (2:4.0.4-7). libproc2-0 set to manually installed. libjs-bootstrap is already the newest version (3.4.1+dfsg-3). libjs-bootstrap set to manually installed. libselinux1 is already the newest version (3.8.1-1). r-cran-ica is already the newest version (1.0-3-1). r-cran-ica set to manually installed. libssl3t64 is already the newest version (3.4.1-1). r-cran-pkgconfig is already the newest version (2.0.3-2). r-cran-pkgconfig set to manually installed. diffutils is already the newest version (1:3.10-3). r-base-core is already the newest version (4.4.3-1+b1). r-base-core set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-2). perl-modules-5.40 set to manually installed. libdpkg-perl is already the newest version (1.22.18). libdpkg-perl set to manually installed. node-bootstrap-sass is already the newest version (3.4.3-2). node-bootstrap-sass set to manually installed. libnamespace-clean-perl is already the newest version (0.27-2). libnamespace-clean-perl set to manually installed. r-cran-ggplot2 is already the newest version (3.5.1+dfsg-1). r-cran-ggplot2 set to manually installed. r-cran-matrixstats is already the newest version (1.5.0-1). r-cran-matrixstats set to manually installed. r-cran-spatstat.utils is already the newest version (3.1-3-1). r-cran-spatstat.utils set to manually installed. r-cran-cpp11 is already the newest version (0.5.2-1). r-cran-cpp11 set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. fonts-dejavu-mono is already the newest version (2.37-8). fonts-dejavu-mono set to manually installed. r-cran-plotly is already the newest version (4.10.4+dfsg-2). r-cran-plotly set to manually installed. libsqlite3-0 is already the newest version (3.46.1-2). r-cran-mgcv is already the newest version (1.9-3-1). r-cran-mgcv set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libdynaloader-functions-perl is already the newest version (0.004-1). libdynaloader-functions-perl set to manually installed. r-cran-stringr is already the newest version (1.5.1-1). r-cran-stringr set to manually installed. libpython3-stdlib is already the newest version (3.13.2-2). libpython3-stdlib set to manually installed. libsub-install-perl is already the newest version (0.929-1). libsub-install-perl set to manually installed. libwww-curl-perl is already the newest version (4.17-11). libwww-curl-perl set to manually installed. libsframe1 is already the newest version (2.44-3). libsframe1 set to manually installed. ucf is already the newest version (3.0051). ucf set to manually installed. pandoc is already the newest version (3.1.11.1+ds-2). pandoc set to manually installed. r-cran-glue is already the newest version (1.8.0-1). r-cran-glue set to manually installed. debhelper is already the newest version (13.24.2). debhelper set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libclone-perl is already the newest version (0.47-1+b1). libclone-perl set to manually installed. sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. r-cran-plyr is already the newest version (1.8.9-1). r-cran-plyr set to manually installed. r-cran-viridislite is already the newest version (0.4.2-2). r-cran-viridislite set to manually installed. make is already the newest version (4.4.1-2). make set to manually installed. libclass-load-xs-perl is already the newest version (0.10-2+b4). libclass-load-xs-perl set to manually installed. r-cran-spatstat.random is already the newest version (3.3-3-1). r-cran-spatstat.random set to manually installed. r-cran-dplyr is already the newest version (1.1.4-4). r-cran-dplyr set to manually installed. libicu-dev is already the newest version (76.1-3). libicu-dev set to manually installed. libcurl3t64-gnutls is already the newest version (8.13.0-1). libcurl3t64-gnutls set to manually installed. perl-base is already the newest version (5.40.1-2). r-cran-munsell is already the newest version (0.5.1-1). r-cran-munsell set to manually installed. findutils is already the newest version (4.10.0-3). libtry-tiny-perl is already the newest version (0.32-1). libtry-tiny-perl set to manually installed. r-cran-future.apply is already the newest version (1.11.3+dfsg-1). r-cran-future.apply set to manually installed. libasan8 is already the newest version (14.2.0-19). libasan8 set to manually installed. libpng-dev is already the newest version (1.6.47-1.1). libpng-dev set to manually installed. perl is already the newest version (5.40.1-2). perl set to manually installed. r-cran-rlang is already the newest version (1.1.5-1). r-cran-rlang set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). r-cran-fs is already the newest version (1.6.5+dfsg-1). r-cran-fs set to manually installed. libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. libx11-6 is already the newest version (2:1.8.12-1). libx11-6 set to manually installed. libstdc++-14-dev is already the newest version (14.2.0-19). libstdc++-14-dev set to manually installed. r-cran-cli is already the newest version (3.6.4-1). r-cran-cli set to manually installed. r-cran-rcpptoml is already the newest version (0.2.3+dfsg-1). r-cran-rcpptoml set to manually installed. xauth is already the newest version (1:1.1.2-1.1). xauth set to manually installed. r-cran-rcppeigen is already the newest version (0.3.4.0.2-1). r-cran-rcppeigen set to manually installed. libgfortran-14-dev is already the newest version (14.2.0-19). libgfortran-14-dev set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. libgcc-s1 is already the newest version (14.2.0-19). libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. sed is already the newest version (4.9-2). r-cran-lifecycle is already the newest version (1.0.4+dfsg-1). r-cran-lifecycle set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:14.2.0-1). gcc-x86-64-linux-gnu set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. r-cran-lattice is already the newest version (0.22-7-1). r-cran-lattice set to manually installed. r-cran-seuratobject is already the newest version (5.0.2-1). r-cran-seuratobject set to manually installed. r-cran-kernsmooth is already the newest version (2.23-26-1). r-cran-kernsmooth set to manually installed. libjs-jquery-ui is already the newest version (1.13.2+dfsg-1). libjs-jquery-ui set to manually installed. r-cran-png is already the newest version (0.1-8-1+b1). r-cran-png set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1). libnghttp2-14 set to manually installed. libuuid1 is already the newest version (2.41-3). grep is already the newest version (3.11-4). r-cran-matrix is already the newest version (1.7-3-1). r-cran-matrix set to manually installed. libdebhelper-perl is already the newest version (13.24.2). libdebhelper-perl set to manually installed. libparams-classify-perl is already the newest version (0.015-2+b4). libparams-classify-perl set to manually installed. r-cran-here is already the newest version (1.0.1-2). r-cran-here set to manually installed. file is already the newest version (1:5.46-4). file set to manually installed. gzip is already the newest version (1.13-1). patch is already the newest version (2.7.6-7). patch set to manually installed. libtext-charwidth-perl is already the newest version (0.04-11+b4). libtext-charwidth-perl set to manually installed. r-cran-base64enc is already the newest version (0.1-3-3). r-cran-base64enc set to manually installed. libc-bin is already the newest version (2.41-6). libidn2-0 is already the newest version (2.3.8-2). libidn2-0 set to manually installed. libpangocairo-1.0-0 is already the newest version (1.56.3-1). libpangocairo-1.0-0 set to manually installed. libwebp7 is already the newest version (1.5.0-0.1). libwebp7 set to manually installed. libjs-highlight.js is already the newest version (9.18.5+dfsg1-2). libjs-highlight.js set to manually installed. r-cran-future is already the newest version (1.34.0+dfsg-1). r-cran-future set to manually installed. openssl-provider-legacy is already the newest version (3.4.1-1). r-cran-spatstat.explore is already the newest version (3.3-4-1). r-cran-spatstat.explore set to manually installed. fontconfig is already the newest version (2.15.0-2.2). fontconfig set to manually installed. r-cran-cowplot is already the newest version (1.1.3+dfsg-1). r-cran-cowplot set to manually installed. libgnutls30t64 is already the newest version (3.8.9-2). libgnutls30t64 set to manually installed. libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1). libjs-jquery set to manually installed. liblua5.4-0 is already the newest version (5.4.7-1+b2). liblua5.4-0 set to manually installed. libnuma1 is already the newest version (2.0.18-1+b1). libnuma1 set to manually installed. libblas-dev is already the newest version (3.12.1-2). libblas-dev set to manually installed. openssl is already the newest version (3.4.1-1). openssl set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:14.2.0-1). g++-x86-64-linux-gnu set to manually installed. r-cran-spatstat.geom is already the newest version (3.3-6-1). r-cran-spatstat.geom set to manually installed. libpcre2-32-0 is already the newest version (10.45-1). libpcre2-32-0 set to manually installed. libpackage-stash-xs-perl is already the newest version (0.30-1+b4). libpackage-stash-xs-perl set to manually installed. r-cran-tinytex is already the newest version (0.56-1). r-cran-tinytex set to manually installed. libjs-popper.js is already the newest version (1.16.1+ds-6). libjs-popper.js set to manually installed. libpng16-16t64 is already the newest version (1.6.47-1.1). libpng16-16t64 set to manually installed. libpcre2-dev is already the newest version (10.45-1). libpcre2-dev set to manually installed. libjs-jquery-selectize.js is already the newest version (0.12.6+dfsg-1.1). libjs-jquery-selectize.js set to manually installed. r-cran-miniui is already the newest version (0.1.1.1-3). r-cran-miniui set to manually installed. libjs-mathjax is already the newest version (2.7.9+dfsg-1). libjs-mathjax set to manually installed. libpcre2-16-0 is already the newest version (10.45-1). libpcre2-16-0 set to manually installed. r-cran-isoband is already the newest version (0.2.7-1). r-cran-isoband set to manually installed. r-cran-littler is already the newest version (0.3.21-1). r-cran-littler set to manually installed. libthai-data is already the newest version (0.1.29-2). libthai-data set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). liblsan0 is already the newest version (14.2.0-19). liblsan0 set to manually installed. libc6-dev is already the newest version (2.41-6). libc6-dev set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. r-cran-utf8 is already the newest version (1.2.4-1). r-cran-utf8 set to manually installed. libnghttp3-9 is already the newest version (1.8.0-1). libnghttp3-9 set to manually installed. libsystemd0 is already the newest version (257.4-9). libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. r-cran-rprojroot is already the newest version (2.0.4-2). r-cran-rprojroot set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libcrypt1 is already the newest version (1:4.4.38-1). libcc1-0 is already the newest version (14.2.0-19). libcc1-0 set to manually installed. fonts-glyphicons-halflings is already the newest version (1.009~3.4.1+dfsg-3). fonts-glyphicons-halflings set to manually installed. libtirpc3t64 is already the newest version (1.3.6+ds-1). libtirpc3t64 set to manually installed. r-cran-rcppannoy is already the newest version (0.0.22-1). r-cran-rcppannoy set to manually installed. libblkid1 is already the newest version (2.41-3). r-cran-parallelly is already the newest version (1.42.0-1). r-cran-parallelly set to manually installed. libtool is already the newest version (2.5.4-4). libtool set to manually installed. dpkg is already the newest version (1.22.18). libpam-modules is already the newest version (1.7.0-3). libvariable-magic-perl is already the newest version (0.64-1+b1). libvariable-magic-perl set to manually installed. gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. gfortran is already the newest version (4:14.2.0-1). gfortran set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libgfortran5 is already the newest version (14.2.0-19). libgfortran5 set to manually installed. libcap2 is already the newest version (1:2.75-4). r-cran-bslib is already the newest version (0.9.0+dfsg-1). r-cran-bslib set to manually installed. pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. r-cran-later is already the newest version (1.4.1+dfsg-1). r-cran-later set to manually installed. r-cran-colorspace is already the newest version (2.1-1+dfsg-1). r-cran-colorspace set to manually installed. pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. libb-hooks-op-check-perl is already the newest version (0.22-3+b2). libb-hooks-op-check-perl set to manually installed. r-cran-openssl is already the newest version (2.3.2+dfsg-1). r-cran-openssl set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. libexpat1 is already the newest version (2.7.1-1). libexpat1 set to manually installed. icu-devtools is already the newest version (76.1-3). icu-devtools set to manually installed. autoconf is already the newest version (2.72-3). autoconf set to manually installed. fonts-dejavu-core is already the newest version (2.37-8). fonts-dejavu-core set to manually installed. libtirpc-dev is already the newest version (1.3.6+ds-1). libtirpc-dev set to manually installed. fonts-font-awesome is already the newest version (5.0.10+really4.7.0~dfsg-4.1). fonts-font-awesome set to manually installed. sysvinit-utils is already the newest version (3.14-4). libtsan2 is already the newest version (14.2.0-19). libtsan2 set to manually installed. r-cran-tensor is already the newest version (1.5-4). r-cran-tensor set to manually installed. m4 is already the newest version (1.4.19-7). m4 set to manually installed. r-cran-spatstat.univar is already the newest version (3.1-2-1). r-cran-spatstat.univar set to manually installed. r-cran-rcpphnsw is already the newest version (0.6.0+ds-1). r-cran-rcpphnsw set to manually installed. r-cran-rspectra is already the newest version (0.16-2-1). r-cran-rspectra set to manually installed. libtiff6 is already the newest version (4.7.0-3). libtiff6 set to manually installed. libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b1). libxcb-render0 set to manually installed. libparams-util-perl is already the newest version (1.102-3+b1). libparams-util-perl set to manually installed. r-cran-mass is already the newest version (7.3-65-1). r-cran-mass set to manually installed. r-cran-tidyselect is already the newest version (1.2.1+dfsg-1). r-cran-tidyselect set to manually installed. libtirpc-common is already the newest version (1.3.6+ds-1). libtirpc-common set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:14.2.0-1). cpp-x86-64-linux-gnu set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. debianutils is already the newest version (5.21). libb-hooks-endofscope-perl is already the newest version (0.28-1). libb-hooks-endofscope-perl set to manually installed. libjs-es5-shim is already the newest version (4.6.7-2). libjs-es5-shim set to manually installed. binutils-common is already the newest version (2.44-3). binutils-common set to manually installed. libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. linux-libc-dev is already the newest version (6.12.21-1). linux-libc-dev set to manually installed. libxau6 is already the newest version (1:1.0.11-1). libxau6 set to manually installed. libcurl4t64 is already the newest version (8.13.0-1). libcurl4t64 set to manually installed. libquadmath0 is already the newest version (14.2.0-19). libquadmath0 set to manually installed. r-cran-evaluate is already the newest version (1.0.3-1). r-cran-evaluate set to manually installed. r-cran-gtools is already the newest version (3.9.5-1). r-cran-gtools set to manually installed. libfreetype6 is already the newest version (2.13.3+dfsg-1). libfreetype6 set to manually installed. r-cran-bh is already the newest version (1.84.0-1). r-cran-bh set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). libtk8.6 is already the newest version (8.6.16-1). libtk8.6 set to manually installed. libpaper2 is already the newest version (2.2.5-0.3+b2). libpaper2 set to manually installed. mawk is already the newest version (1.3.4.20250131-1). libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. libhttp-message-perl is already the newest version (7.00-2). libhttp-message-perl set to manually installed. r-base-dev is already the newest version (4.4.3-1). r-base-dev set to manually installed. r-cran-shiny is already the newest version (1.10.0+dfsg-2). r-cran-shiny set to manually installed. libmoose-perl is already the newest version (2.2207-1+b3). libmoose-perl set to manually installed. libalgorithm-c3-perl is already the newest version (0.11-2). libalgorithm-c3-perl set to manually installed. dctrl-tools is already the newest version (2.24-3+b1). dctrl-tools set to manually installed. gfortran-14-x86-64-linux-gnu is already the newest version (14.2.0-19). gfortran-14-x86-64-linux-gnu set to manually installed. libyaml-0-2 is already the newest version (0.2.5-2). libyaml-0-2 set to manually installed. libfile-which-perl is already the newest version (1.27-2). libfile-which-perl set to manually installed. r-cran-catools is already the newest version (1.18.3-1). r-cran-catools set to manually installed. r-cran-cluster is already the newest version (2.1.8.1-1). r-cran-cluster set to manually installed. libamd3 is already the newest version (1:7.10.1+dfsg-1). libamd3 set to manually installed. r-cran-globals is already the newest version (0.16.3-1). r-cran-globals set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libpython3.13-stdlib is already the newest version (3.13.2-3). libpython3.13-stdlib set to manually installed. libjs-json is already the newest version (0~20221030+~1.0.8-1). libjs-json set to manually installed. libsub-exporter-progressive-perl is already the newest version (0.001013-3). libsub-exporter-progressive-perl set to manually installed. libsub-name-perl is already the newest version (0.28-1). libsub-name-perl set to manually installed. libglpk40 is already the newest version (5.0-1+b2). libglpk40 set to manually installed. libboost1.83-dev is already the newest version (1.83.0-4.2). libboost1.83-dev set to manually installed. libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libkeyutils1 is already the newest version (1.6.3-5). libkeyutils1 set to manually installed. base-passwd is already the newest version (3.6.7). javascript-common is already the newest version (12). javascript-common set to manually installed. r-cran-ggridges is already the newest version (0.5.6-1). r-cran-ggridges set to manually installed. r-cran-vctrs is already the newest version (0.6.5-1). r-cran-vctrs set to manually installed. libjpeg-dev is already the newest version (1:2.1.5-3.1). libjpeg-dev set to manually installed. r-cran-fastmap is already the newest version (1.2.0-1). r-cran-fastmap set to manually installed. ncurses-base is already the newest version (6.5+20250216-2). zip is already the newest version (3.0-14). zip set to manually installed. libgcc-14-dev is already the newest version (14.2.0-19). libgcc-14-dev set to manually installed. libdevel-overloadinfo-perl is already the newest version (0.007-1). libdevel-overloadinfo-perl set to manually installed. libjbig0 is already the newest version (2.1-6.1+b2). libjbig0 set to manually installed. r-cran-rcolorbrewer is already the newest version (1.1-3-1). r-cran-rcolorbrewer set to manually installed. liblerc4 is already the newest version (4.0.0+ds-5). liblerc4 set to manually installed. r-cran-rmarkdown is already the newest version (2.29+dfsg-1). r-cran-rmarkdown set to manually installed. r-cran-sys is already the newest version (3.4.3-1). r-cran-sys set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. r-cran-rann is already the newest version (2.6.2-1). r-cran-rann set to manually installed. r-cran-nlme is already the newest version (3.1.168-1). r-cran-nlme set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libsmartcols1 is already the newest version (2.41-3). bsdutils is already the newest version (1:2.41-3). libpcre2-8-0 is already the newest version (10.45-1). liblzma-dev is already the newest version (5.8.1-1). liblzma-dev set to manually installed. r-cran-commonmark is already the newest version (1.9.5-1). r-cran-commonmark set to manually installed. coreutils is already the newest version (9.6-2). r-cran-reticulate is already the newest version (1.41.0.1+dfsg-1). r-cran-reticulate set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. r-cran-fitdistrplus is already the newest version (1.2-2-1). r-cran-fitdistrplus set to manually installed. libngtcp2-16 is already the newest version (1.11.0-1). libngtcp2-16 set to manually installed. libjpeg62-turbo-dev is already the newest version (1:2.1.5-3.1). libjpeg62-turbo-dev set to manually installed. r-cran-uwot is already the newest version (0.2.3-1). r-cran-uwot set to manually installed. r-cran-htmltools is already the newest version (0.5.8.1-1). r-cran-htmltools set to manually installed. util-linux is already the newest version (2.41-3). cpp-14 is already the newest version (14.2.0-19). cpp-14 set to manually installed. liblapack-dev is already the newest version (3.12.1-2). liblapack-dev set to manually installed. libpackage-deprecationmanager-perl is already the newest version (0.18-1). libpackage-deprecationmanager-perl set to manually installed. libjs-modernizr is already the newest version (3.13.0-0.1). libjs-modernizr set to manually installed. libxcb1 is already the newest version (1.17.0-2+b1). libxcb1 set to manually installed. libio-html-perl is already the newest version (1.004-3). libio-html-perl set to manually installed. media-types is already the newest version (13.0.0). media-types set to manually installed. libxrender1 is already the newest version (1:0.9.12-1). libxrender1 set to manually installed. r-cran-patchwork is already the newest version (1.3.0-1). r-cran-patchwork set to manually installed. r-cran-promises is already the newest version (1.3.2+dfsg-1). r-cran-promises set to manually installed. r-cran-zoo is already the newest version (1.8-13-1). r-cran-zoo set to manually installed. r-cran-gtable is already the newest version (0.3.6+dfsg-1). r-cran-gtable set to manually installed. r-cran-knitr is already the newest version (1.50+dfsg-1). r-cran-knitr set to manually installed. libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-9). libsasl2-2 set to manually installed. libgprofng0 is already the newest version (2.44-3). libgprofng0 set to manually installed. libboost-dev is already the newest version (1.83.0.2+b2). libboost-dev set to manually installed. liblwp-mediatypes-perl is already the newest version (6.04-2). liblwp-mediatypes-perl set to manually installed. libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. r-cran-tidyr is already the newest version (1.3.1-1). r-cran-tidyr set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libdebconfclient0 is already the newest version (0.278). r-cran-igraph is already the newest version (2.1.4-1). r-cran-igraph set to manually installed. gfortran-14 is already the newest version (14.2.0-19). gfortran-14 set to manually installed. libpaper-utils is already the newest version (2.2.5-0.3+b2). libpaper-utils set to manually installed. libldap2 is already the newest version (2.6.9+dfsg-2). libldap2 set to manually installed. xdg-utils is already the newest version (1.2.1-2). xdg-utils set to manually installed. libattr1 is already the newest version (1:2.5.2-3). libngtcp2-crypto-gnutls8 is already the newest version (1.11.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libjs-prettify is already the newest version (2015.12.04+dfsg-1.1). libjs-prettify set to manually installed. r-cran-pkgkitten is already the newest version (0.2.4-1). r-cran-pkgkitten set to manually installed. r-cran-rocr is already the newest version (1.0-11-3). r-cran-rocr set to manually installed. libtimedate-perl is already the newest version (2.3300-2). libtimedate-perl set to manually installed. libctf-nobfd0 is already the newest version (2.44-3). libctf-nobfd0 set to manually installed. libjs-sifter.js is already the newest version (0.6.0+dfsg-3). libjs-sifter.js set to manually installed. r-cran-ggrepel is already the newest version (0.9.6-1). r-cran-ggrepel set to manually installed. r-cran-shinyjs is already the newest version (2.1.0-1). r-cran-shinyjs set to manually installed. r-cran-askpass is already the newest version (1.2.1-1). r-cran-askpass set to manually installed. r-cran-cachem is already the newest version (1.1.0-1). r-cran-cachem set to manually installed. libncurses-dev is already the newest version (6.5+20250216-2). libncurses-dev set to manually installed. libpixman-1-0 is already the newest version (0.44.0-3). libpixman-1-0 set to manually installed. r-cran-fontawesome is already the newest version (0.5.3-1). r-cran-fontawesome set to manually installed. libmodule-runtime-conflicts-perl is already the newest version (0.003-2). libmodule-runtime-conflicts-perl set to manually installed. procps is already the newest version (2:4.0.4-7). procps set to manually installed. libdatrie1 is already the newest version (0.2.13-3+b1). libdatrie1 set to manually installed. g++-14 is already the newest version (14.2.0-19). g++-14 set to manually installed. r-cran-labeling is already the newest version (0.4.3-1). r-cran-labeling set to manually installed. libfontconfig1 is already the newest version (2.15.0-2.2). libfontconfig1 set to manually installed. libjs-microplugin.js is already the newest version (0.0.3+dfsg-1.1). libjs-microplugin.js set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-9). libsasl2-modules-db set to manually installed. libltdl7 is already the newest version (2.5.4-4). libltdl7 set to manually installed. r-cran-mime is already the newest version (0.12-2). r-cran-mime set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-1). libxdmcp6 set to manually installed. libclass-load-perl is already the newest version (0.25-2). libclass-load-perl set to manually installed. r-cran-gdata is already the newest version (3.0.1-1). r-cran-gdata set to manually installed. r-cran-gplots is already the newest version (3.2.0-1). r-cran-gplots set to manually installed. liblapack3 is already the newest version (3.12.1-2). liblapack3 set to manually installed. libmro-compat-perl is already the newest version (0.15-2). libmro-compat-perl set to manually installed. r-cran-polyclip is already the newest version (1.10-7-1). r-cran-polyclip set to manually installed. libpackage-stash-perl is already the newest version (0.40-1). libpackage-stash-perl set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). cpp-14-x86-64-linux-gnu is already the newest version (14.2.0-19). cpp-14-x86-64-linux-gnu set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). libswitch-perl is already the newest version (2.17-3). libswitch-perl set to manually installed. r-cran-crosstalk is already the newest version (1.2.1+dfsg-1). r-cran-crosstalk set to manually installed. libhwasan0 is already the newest version (14.2.0-19). libhwasan0 set to manually installed. libjs-bootstrap4 is already the newest version (4.6.1+dfsg1-4). libjs-bootstrap4 set to manually installed. r-cran-spatstat.sparse is already the newest version (3.1-0-1). r-cran-spatstat.sparse set to manually installed. r-cran-fastdummies is already the newest version (1.7.5-1). r-cran-fastdummies set to manually installed. r-cran-yaml is already the newest version (2.3.10-1). r-cran-yaml set to manually installed. python3 is already the newest version (3.13.2-2). python3 set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. gcc-14 is already the newest version (14.2.0-19). gcc-14 set to manually installed. r-cran-r6 is already the newest version (2.6.1-1). r-cran-r6 set to manually installed. libdeflate-dev is already the newest version (1.23-1+b1). libdeflate-dev set to manually installed. gcc-14-x86-64-linux-gnu is already the newest version (14.2.0-19). gcc-14-x86-64-linux-gnu set to manually installed. r-cran-xtable is already the newest version (1:1.8-4-2). r-cran-xtable set to manually installed. r-cran-gridextra is already the newest version (2.3-3). r-cran-gridextra set to manually installed. gettext is already the newest version (0.23.1-1). gettext set to manually installed. r-cran-scattermore is already the newest version (1.2-1). r-cran-scattermore set to manually installed. r-cran-reshape2 is already the newest version (1.4.4-2). r-cran-reshape2 set to manually installed. r-cran-leidenbase is already the newest version (0.1.32-1). r-cran-leidenbase set to manually installed. libpython3.13-minimal is already the newest version (3.13.2-3). libpython3.13-minimal set to manually installed. autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. libctf0 is already the newest version (2.44-3). libctf0 set to manually installed. libhttp-date-perl is already the newest version (6.06-1). libhttp-date-perl set to manually installed. libsharpyuv0 is already the newest version (1.5.0-0.1). libsharpyuv0 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. pandoc-data is already the newest version (3.1.11.1-3). pandoc-data set to manually installed. libudev1 is already the newest version (257.4-9). gcc-14-base is already the newest version (14.2.0-19). r-cran-rcpp is already the newest version (1.0.14-1). r-cran-rcpp set to manually installed. libcolamd3 is already the newest version (1:7.10.1+dfsg-1). libcolamd3 set to manually installed. node-html5shiv is already the newest version (3.7.3+dfsg-5). node-html5shiv set to manually installed. r-cran-listenv is already the newest version (0.9.1+dfsg-1). r-cran-listenv set to manually installed. r-cran-sitmo is already the newest version (2.0.2-1+b1). r-cran-sitmo set to manually installed. libice6 is already the newest version (2:1.1.1-1). libice6 set to manually installed. r-cran-sctransform is already the newest version (0.4.1-1). r-cran-sctransform set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. r-cran-rappdirs is already the newest version (0.3.3-1). r-cran-rappdirs set to manually installed. r-cran-irlba is already the newest version (2.3.5.1-4). r-cran-irlba set to manually installed. dash is already the newest version (0.5.12-12). dh-r is already the newest version (20241218). dh-r set to manually installed. gfortran-x86-64-linux-gnu is already the newest version (4:14.2.0-1). gfortran-x86-64-linux-gnu set to manually installed. python3.13 is already the newest version (3.13.2-3). python3.13 set to manually installed. init-system-helpers is already the newest version (1.68). libencode-locale-perl is already the newest version (1.05-3). libencode-locale-perl set to manually installed. r-cran-generics is already the newest version (0.1.3-1). r-cran-generics set to manually installed. liblzma5 is already the newest version (5.8.1-1). libuv1t64 is already the newest version (1.50.0-2). libuv1t64 set to manually installed. r-cran-rcppprogress is already the newest version (0.4.2-2). r-cran-rcppprogress set to manually installed. automake is already the newest version (1:1.17-4). automake set to manually installed. r-cran-digest is already the newest version (0.6.37-1). r-cran-digest set to manually installed. r-cran-pillar is already the newest version (1.10.1+dfsg-1). r-cran-pillar set to manually installed. r-cran-httpuv is already the newest version (1.6.15+dfsg-1). r-cran-httpuv set to manually installed. libpangoft2-1.0-0 is already the newest version (1.56.3-1). libpangoft2-1.0-0 set to manually installed. libxss1 is already the newest version (1:1.2.3-1+b3). libxss1 set to manually installed. r-cran-abind is already the newest version (1.4-8-1). r-cran-abind set to manually installed. libsm6 is already the newest version (2:1.2.6-1). libsm6 set to manually installed. r-cran-farver is already the newest version (2.1.2-1). r-cran-farver set to manually installed. r-cran-tibble is already the newest version (3.2.1+dfsg-3). r-cran-tibble set to manually installed. fonts-mathjax is already the newest version (2.7.9+dfsg-1). fonts-mathjax set to manually installed. libjs-jquery-datatables is already the newest version (1.11.5+dfsg-2). libjs-jquery-datatables set to manually installed. r-cran-lmtest is already the newest version (0.9.40-1). r-cran-lmtest set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. x11-common is already the newest version (1:7.7+24). x11-common set to manually installed. libaudit-common is already the newest version (1:4.0.2-2). r-cran-scales is already the newest version (1.3.0-1). r-cran-scales set to manually installed. r-cran-stringi is already the newest version (1.8.4-1+b1). r-cran-stringi set to manually installed. libsuitesparseconfig7 is already the newest version (1:7.10.1+dfsg-1). libsuitesparseconfig7 set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). libdevel-callchecker-perl is already the newest version (0.009-1+b1). libdevel-callchecker-perl set to manually installed. r-cran-dqrng is already the newest version (0.3.2+dfsg-1). r-cran-dqrng set to manually installed. libmodule-implementation-perl is already the newest version (0.09-2). libmodule-implementation-perl set to manually installed. unzip is already the newest version (6.0-29). unzip set to manually installed. libxft2 is already the newest version (2.3.6-1+b4). libxft2 set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.44-3). binutils-x86-64-linux-gnu set to manually installed. r-cran-jquerylib is already the newest version (0.1.4+dfsg-4). r-cran-jquerylib set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.5-3.1). libjpeg62-turbo set to manually installed. libx11-data is already the newest version (2:1.8.12-1). libx11-data set to manually installed. libdist-checkconflicts-perl is already the newest version (0.11-2). libdist-checkconflicts-perl set to manually installed. r-cran-spam is already the newest version (2.11-1-1). r-cran-spam set to manually installed. debconf is already the newest version (1.5.91). libdata-optlist-perl is already the newest version (0.114-1). libdata-optlist-perl set to manually installed. libgomp1 is already the newest version (14.2.0-19). libgomp1 set to manually installed. libsub-exporter-perl is already the newest version (0.990-1). libsub-exporter-perl set to manually installed. bsdextrautils is already the newest version (2.41-3). bsdextrautils set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libgraphite2-3 is already the newest version (1.3.14-2+b1). libgraphite2-3 set to manually installed. libthai0 is already the newest version (0.1.29-2+b1). libthai0 set to manually installed. libicu76 is already the newest version (76.1-3). libicu76 set to manually installed. base-files is already the newest version (13.7). r-cran-magrittr is already the newest version (2.0.3-1). r-cran-magrittr set to manually installed. libstdc++6 is already the newest version (14.2.0-19). libstdc++6 set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). libjs-twitter-bootstrap-datepicker is already the newest version (1.3.1+dfsg1-4.1). libjs-twitter-bootstrap-datepicker set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. libblas3 is already the newest version (3.12.1-2). libblas3 set to manually installed. r-cran-progressr is already the newest version (0.15.1-1). r-cran-progressr set to manually installed. r-cran-rcpparmadillo is already the newest version (14.4.1-1-1). r-cran-rcpparmadillo set to manually installed. r-cran-sass is already the newest version (0.4.9+dfsg-1). r-cran-sass set to manually installed. fontconfig-config is already the newest version (2.15.0-2.2). fontconfig-config set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b1). libxcb-shm0 set to manually installed. node-normalize.css is already the newest version (8.0.1-5). node-normalize.css set to manually installed. libreadline-dev is already the newest version (8.2-6). libreadline-dev set to manually installed. dpkg-dev is already the newest version (1.22.18). dpkg-dev set to manually installed. libdeflate0 is already the newest version (1.23-1+b1). libdeflate0 set to manually installed. libtcl8.6 is already the newest version (8.6.16+dfsg-1). libtcl8.6 set to manually installed. r-cran-crayon is already the newest version (1.5.3-1). r-cran-crayon set to manually installed. libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. python3.13-minimal is already the newest version (3.13.2-3). python3.13-minimal set to manually installed. tzdata is already the newest version (2025b-1). tzdata set to manually installed. r-cran-xfun is already the newest version (0.51+dfsg-1). r-cran-xfun set to manually installed. tar is already the newest version (1.35+dfsg-3.1). r-cran-codetools is already the newest version (0.2-20-1). r-cran-codetools set to manually installed. libfribidi0 is already the newest version (1.0.16-1). libfribidi0 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.Inm3iik2uv (Reading database ... 59020 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Inm3iik2uv I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Inm3iik2uv I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.Inm3iik2uv... I: success in 103.5343 seconds Downloading dependency 509 of 509: libfribidi0:amd64=1.0.16-1 env --chdir=/srv/rebuilderd/tmp/rebuilderdj7YziV/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1744001200 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildDgdUGf/debrebuild.sbuildrc.j0iAFk5GxM8e sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildDgdUGf/debrebuild.tar.uOOi4jePAebi --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=r-cran-seurat-5.2.1 /srv/rebuilderd/tmp/rebuilderdj7YziV/inputs/r-cran-seurat_5.2.1-5.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3 (07 June 2025) on osuosl4-amd64.reproducible.osuosl.org +==============================================================================+ | r-cran-seurat 5.2.1-5 (amd64) Thu, 19 Jun 2025 15:09:17 +0000 | +==============================================================================+ Package: r-cran-seurat Version: 5.2.1-5 Source Version: 5.2.1-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildDgdUGf/debrebuild.tar.uOOi4jePAebi to /srv/rebuilderd/tmp/tmp.sbuild.rI7lO2y_LT... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Thu, 19 Jun 2025 15:09:30 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdj7YziV/inputs/r-cran-seurat_5.2.1-5.dsc exists in /srv/rebuilderd/tmp/rebuilderdj7YziV/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 19 Jun 2025 15:09:31 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-seuratobject (>= 5.0.2), r-cran-cluster, r-cran-cowplot, r-cran-fastdummies, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-generics (>= 0.1.3), r-cran-ggplot2, r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leidenbase, r-cran-lifecycle, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-progressr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy, r-cran-rcpphnsw, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rspectra, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 1.2), r-cran-sctransform (>= 0.4.1), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot, r-cran-rcppeigen, r-cran-rcppprogress, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-seuratobject (>= 5.0.2), r-cran-cluster, r-cran-cowplot, r-cran-fastdummies, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-generics (>= 0.1.3), r-cran-ggplot2, r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leidenbase, r-cran-lifecycle, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-progressr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy, r-cran-rcpphnsw, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rspectra, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 1.2), r-cran-sctransform (>= 0.4.1), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot, r-cran-rcppeigen, r-cran-rcppprogress, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-ziakMv/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Thu, 19 Jun 2025 15:09:37 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Thu, 19 Jun 2025 15:09:38 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.31-1 (2025-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.21-1 Package versions: autoconf_2.72-3 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 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sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-1 ucf_3.0051 unzip_6.0-29 util-linux_2.41-3 x11-common_1:7.7+24 xauth_1:1.1.2-1.1 xdg-utils_1.2.1-2 xz-utils_5.8.1-1 zip_3.0-14 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Thu, 19 Jun 2025 15:09:38 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-cran-seurat Binary: r-cran-seurat Architecture: any Version: 5.2.1-5 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://cran.r-project.org/package=Seurat Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-seurat Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-seurat.git Testsuite: autopkgtest, autopkgtest-pkg-r Testsuite-Triggers: r-bioc-biobase, r-bioc-biocgenerics, r-bioc-delayedarray, r-bioc-deseq2, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-glmgampoi, r-bioc-iranges, r-bioc-limma, r-bioc-monocle, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-singlecellexperiment, r-bioc-summarizedexperiment, r-cran-ape, r-cran-data.table, r-cran-ggrastr, r-cran-hdf5r, r-cran-metap, r-cran-mixtools, r-cran-r.utils, r-cran-rsvd, r-cran-sf, r-cran-testthat, r-cran-vgam Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-seuratobject (>= 5.0.2), r-cran-cluster, r-cran-cowplot, r-cran-fastdummies, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-generics (>= 0.1.3), r-cran-ggplot2, r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leidenbase, r-cran-lifecycle, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-progressr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy, r-cran-rcpphnsw, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rspectra, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 1.2), r-cran-sctransform (>= 0.4.1), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot, r-cran-rcppeigen, r-cran-rcppprogress Package-List: r-cran-seurat deb gnu-r optional arch=any Checksums-Sha1: e3be75d876c41391d42db7d01064b84cdb03fa0c 2087856 r-cran-seurat_5.2.1.orig.tar.gz 541870227f5bef1e44f47f58ad9875eb00b08516 5020 r-cran-seurat_5.2.1-5.debian.tar.xz Checksums-Sha256: 0e99c0f9a6fee4a1e5e241aa2f8bb82288ff08185680f283124854a7b22fda19 2087856 r-cran-seurat_5.2.1.orig.tar.gz 3767a1edb1c0122bee7333f418739e3516c530e3f898dec9c81f002fe89c248e 5020 r-cran-seurat_5.2.1-5.debian.tar.xz Files: d6233a192fd8f84a5db6daaaef79c91d 2087856 r-cran-seurat_5.2.1.orig.tar.gz 8fb7eafdf23026567c9bd49dba56aee1 5020 r-cran-seurat_5.2.1-5.debian.tar.xz -----BEGIN 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in /build/reproducible-path/r-cran-seurat-5.2.1 dpkg-source: info: unpacking r-cran-seurat_5.2.1.orig.tar.gz dpkg-source: info: unpacking r-cran-seurat_5.2.1-5.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1744001200 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package r-cran-seurat dpkg-buildpackage: info: source version 5.2.1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-seurat/ -a -O--buildsystem=R I: R packages needed for DEP8: ape, biobase, biocgenerics, data.table, deseq2, delayedarray, genomicranges, genomeinfodb, glmgampoi, ggrastr, hdf5r, iranges, limma, metap, mixtools, monocle, rsvd, r.utils, rtracklayer, s4vectors, sf (>= 1.0-0), singlecellexperiment, summarizedexperiment, testthat, vgam I: R Package: Seurat Version: 5.2.1 I: Building using R version 4.4.3-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 07 Apr 2025 13:46:40 +0900 mkdir -p /build/reproducible-path/r-cran-seurat-5.2.1/debian/r-cran-seurat/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-seurat-5.2.1/debian/r-cran-seurat/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 07 Apr 2025 13:46:40 +0900'" * installing *source* package ‘Seurat’ ... ** package ‘Seurat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++ (Debian 14.2.0-19) 14.2.0’ using C++17 make[1]: Entering directory '/build/reproducible-path/r-cran-seurat-5.2.1/src' g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:205, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:174: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:165: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:271: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:205, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:174: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:165: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:271: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ RcppExports.cpp:71:105: required from here 71 | rcpp_result_gen = Rcpp::wrap(RowMergeMatrices(mat1, mat2, mat1_rownames, mat2_rownames, all_rownames)); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from ‘struct Eigen::internal::traits > >’ 18 | struct traits > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ 32 | enum { has_direct_access = (traits::Flags & DirectAccessBit) ? 1 : 0, | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from ‘class Eigen::Map >’ 111 | int Level = internal::accessors_level::has_write_access ? WriteAccessors : ReadOnlyAccessors | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RcppExports.cpp:94:67: required from here 94 | rcpp_result_gen = Rcpp::wrap(Standardize(mat, display_progress)); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:24:49: required from ‘struct Eigen::internal::traits > >’ 24 | ? PlainObjectType::ColsAtCompileTime | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ 32 | enum { has_direct_access = (traits::Flags & DirectAccessBit) ? 1 : 0, | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from ‘class Eigen::Map >’ 111 | int Level = internal::accessors_level::has_write_access ? WriteAccessors : ReadOnlyAccessors | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RcppExports.cpp:94:67: required from here 94 | rcpp_result_gen = Rcpp::wrap(Standardize(mat, display_progress)); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase >, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map >’ 94 | template class Map | ^~~ RcppExports.cpp:94:67: required from here 94 | rcpp_result_gen = Rcpp::wrap(Standardize(mat, display_progress)); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ RcppExports.cpp:169:45: required from here 169 | rcpp_result_gen = Rcpp::wrap(FastExpMean(mat, display_progress)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ 77 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ 132 | assign_sparse_to_sparse(dst.derived(), src.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:917:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:713:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ 713 | *this = other.derived(); | ~~~~~~^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ 387 | return ans; | ^~~ /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ 89 | return exporter.get(); | ~~~~~~~~~~~~^~ /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ 152 | return internal::as(x, typename traits::r_type_traits::r_category()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ 34 | inline operator T() { return as(x) ; } | ~~~~~^~~ RcppExports.cpp:29:60: required from here 29 | rcpp_result_gen = Rcpp::wrap(RunModularityClusteringCpp(SNN, modularityFunction, resolution, algorithm, nRandomStarts, nIterations, randomSeed, printOutput, edgefilename)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ 77 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ 132 | assign_sparse_to_sparse(dst.derived(), src.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:917:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:713:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 1; _StorageIndex = int]’ 713 | *this = other.derived(); | ~~~~~~^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/RcppEigenWrap.h:412:24: required from ‘Eigen::SparseMatrix<_Scalar, 1> Rcpp::traits::Exporter >::get() [with T = double]’ 412 | return ans; | ^~~ /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ 89 | return exporter.get(); | ~~~~~~~~~~~~^~ /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ 152 | return internal::as(x, typename traits::r_type_traits::r_category()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ 34 | inline operator T() { return as(x) ; } | ~~~~~^~~ RcppExports.cpp:71:50: required from here 71 | rcpp_result_gen = Rcpp::wrap(RowMergeMatrices(mat1, mat2, mat1_rownames, mat2_rownames, all_rownames)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c data_manipulation.cpp -o data_manipulation.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:205, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:174: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:165: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:271: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ data_manipulation.cpp:18:21: required from here 18 | Eigen::VectorXd colSums = data.transpose() * Eigen::VectorXd::Ones(data.rows()); | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ data_manipulation.cpp:18:21: required from here 18 | Eigen::VectorXd colSums = data.transpose() * Eigen::VectorXd::Ones(data.rows()); | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ 22 | class SparseTransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ 45 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ data_manipulation.cpp:18:45: required from here 18 | Eigen::VectorXd colSums = data.transpose() * Eigen::VectorXd::Ones(data.rows()); | ~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ data_manipulation.cpp:18:71: required from here 18 | Eigen::VectorXd colSums = data.transpose() * Eigen::VectorXd::Ones(data.rows()); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ data_manipulation.cpp:18:83: required from here 18 | Eigen::VectorXd colSums = data.transpose() * Eigen::VectorXd::Ones(data.rows()); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ data_manipulation.cpp:75:127: required from here 75 | std::vector< std::string > mat2_rownames, std::vector< std::string > all_rownames){ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:24:49: required from ‘struct Eigen::internal::traits > >’ 24 | ? PlainObjectType::ColsAtCompileTime | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ 32 | enum { has_direct_access = (traits::Flags & DirectAccessBit) ? 1 : 0, | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from ‘class Eigen::Map >’ 111 | int Level = internal::accessors_level::has_write_access ? WriteAccessors : ReadOnlyAccessors | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ data_manipulation.cpp:131:88: required from here 131 | NumericMatrix Standardize(Eigen::Map mat, bool display_progress = true){ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase >, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map >’ 94 | template class Map | ^~~ data_manipulation.cpp:131:88: required from here 131 | NumericMatrix Standardize(Eigen::Map mat, bool display_progress = true){ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ 45 | class Array | ^~~~~ data_manipulation.cpp:136:20: required from here 136 | Eigen::ArrayXd r = mat.col(i).array(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl >, -1, 1, true, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block >, -1, 1, true>’ 103 | template class Block | ^~~~~ data_manipulation.cpp:136:31: required from here 136 | Eigen::ArrayXd r = mat.col(i).array(); | ~~~~~~~^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >, -1, 1, true> > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >, -1, 1, true> >’ 42 | class ArrayWrapper : public ArrayBase > | ^~~~~~~~~~~~ data_manipulation.cpp:136:40: required from here 136 | Eigen::ArrayXd r = mat.col(i).array(); | ~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 38 | >::type Scalar; | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:138:32: required from here 138 | double colSdev = sqrt((r - colMean).square().sum() / (mat.rows() - 1)); | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:138:32: required from here 138 | double colSdev = sqrt((r - colMean).square().sum() / (mat.rows() - 1)); | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ data_manipulation.cpp:138:47: required from here 138 | double colSdev = sqrt((r - colMean).square().sum() / (mat.rows() - 1)); | ~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, -1, 1, true> >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:96:7: required from ‘class Eigen::internal::sparse_matrix_block_impl, -1, 1>’ 96 | class sparse_matrix_block_impl | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:287:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Sparse>’ 287 | class BlockImpl,BlockRows,BlockCols,true,Sparse> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ 103 | template class Block | ^~~~~ data_manipulation.cpp:186:50: required from here 186 | Eigen::VectorXd col = Eigen::VectorXd(mat.col(k)); | ~~~~~~~^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, 1, true>, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ 103 | template class Block | ^~~~~ data_manipulation.cpp:187:19: required from here 187 | scaled_mat.col(k) = (col.array() - colMean) / colSdev; | ~~~~~~~~~~~~~~^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ 42 | class ArrayWrapper : public ArrayBase > | ^~~~~~~~~~~~ data_manipulation.cpp:187:35: required from here 187 | scaled_mat.col(k) = (col.array() - colMean) / colSdev; | ~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:187:40: required from here 187 | scaled_mat.col(k) = (col.array() - colMean) / colSdev; | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:187:51: required from here 187 | scaled_mat.col(k) = (col.array() - colMean) / colSdev; | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ data_manipulation.cpp:194:30: required from here 194 | return scaled_mat.transpose(); | ~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_sum, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_sum, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_sum, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>’ 56 | class PartialReduxExpr : public internal::dense_xpr_base< PartialReduxExpr >::type, | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 38 | >::type Scalar; | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:229:45: required from here 229 | mat = mat.rowwise() - mat.colwise().mean(); | ~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 38 | >::type Scalar; | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:229:45: required from here 229 | mat = mat.rowwise() - mat.colwise().mean(); | ~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:229:45: required from here 229 | mat = mat.rowwise() - mat.colwise().mean(); | ~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ data_manipulation.cpp:229:46: required from here 229 | mat = mat.rowwise() - mat.colwise().mean(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Replicate.h:61:65: required from ‘class Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1>’ 61 | template class Replicate | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> > >’ 38 | >::type Scalar; | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:229:46: required from here 229 | mat = mat.rowwise() - mat.colwise().mean(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:229:46: required from here 229 | mat = mat.rowwise() - mat.colwise().mean(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ data_manipulation.cpp:231:37: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 0, 8>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Matrix, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ data_manipulation.cpp:231:42: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 38 | >::type Scalar; | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase >, 1, -1, false>, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl >, 1, -1, false, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block >, 1, -1, false>’ 103 | template class Block | ^~~~~ data_manipulation.cpp:368:29: required from here 368 | Eigen::ArrayXd r = x.row(i).array(); | ~~~~~^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >, 1, -1, false> > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >, 1, -1, false> >’ 42 | class ArrayWrapper : public ArrayBase > | ^~~~~~~~~~~~ data_manipulation.cpp:368:38: required from here 368 | Eigen::ArrayXd r = x.row(i).array(); | ~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:58:63: required from ‘struct Eigen::internal::unary_evaluator >, Eigen::internal::IteratorBased, double>’ 58 | typedef typename evaluator::InnerIterator EvalIterator; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1181 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ data_manipulation.cpp:150:23: required from here 150 | mat = mat.transpose(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1, false>’ 103 | template class Block | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:99:21: required from ‘Eigen::CommaInitializer& Eigen::CommaInitializer::operator,(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; XprType = Eigen::Matrix]’ 98 | m_xpr.template block | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 | (m_row, m_col, other.rows(), other.cols()) = other; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ data_manipulation.cpp:249:17: required from here 249 | mat3 << mat1, mat2; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1181 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ 1063 | mat = trMat; | ~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1110 | internal::set_from_triplets >(begin, end, *this, internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ data_manipulation.cpp:110:31: required from here 110 | combined_mat.setFromTriplets(tripletList.begin(), tripletList.end()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, 0, Eigen::OuterStride<> > >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::OuterStride<> >, 0>’ 50 | class SparseMapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from ‘class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >’ 83 | template class SparseRefBase | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ 177 | class Ref, Options, StrideType> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 128 | Ref > tmp(other.derived()); | ^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 216 | return operator=(other); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ 1207 | Base::operator=(other); \ | ~~~~~~~~~~~~~~~^~~~~~~ data_manipulation.cpp:409:42: required from here 409 | mat.col(ci) = replacement.col(rep_idx); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:17:7: required from ‘class Eigen::BlockImpl, 0, Eigen::OuterStride<> >, -1, 1, true, Eigen::Sparse>’ 17 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>’ 103 | template class Block | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:194:85: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 194 | StorageIndex nnz_k = internal::convert_index(tmp.innerVector(k).nonZeros()); | ~~~~~~~~~~~~~~~^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 216 | return operator=(other); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ 1207 | Base::operator=(other); \ | ~~~~~~~~~~~~~~~^~~~~~~ data_manipulation.cpp:409:42: required from here 409 | mat.col(ci) = replacement.col(rep_idx); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Array; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Array; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:478:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ 478 | return Scalar(derived().redux(Eigen::internal::scalar_sum_op())) / Scalar(this->size()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ data_manipulation.cpp:137:28: required from here 137 | double colMean = r.mean(); | ~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ data_manipulation.cpp:138:53: required from here 138 | double colSdev = sqrt((r - colMean).square().sum() / (mat.rows() - 1)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:883:17: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, 1, -1, false> >; Func = assign_op]’ 883 | ActualDstType actualDst(dst); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type = Eigen::Array::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits >::Scalar = double]’ 288 | : Base(other.derived()) | ^ data_manipulation.cpp:368:39: required from here 368 | Eigen::ArrayXd r = x.row(i).array(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:364:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > >’ 364 | struct evaluator, Options, StrideType> > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:45:21: required from ‘Eigen::Index Eigen::BlockImpl::nonZeros() const [with XprType = Eigen::Ref, 0, Eigen::OuterStride<> >; int BlockRows = -1; int BlockCols = 1; Eigen::Index = long int]’ 45 | EvaluatorType matEval(m_matrix); | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:194:97: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 194 | StorageIndex nnz_k = internal::convert_index(tmp.innerVector(k).nonZeros()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 216 | return operator=(other); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ 1207 | Base::operator=(other); \ | ~~~~~~~~~~~~~~~^~~~~~~ data_manipulation.cpp:409:42: required from here 409 | mat.col(ci) = replacement.col(rep_idx); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:277: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base >, -1, 1, true> > >’ 1384 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator >, -1, 1, true> >, Eigen::internal::IndexBased, double>’ 1464 | struct unary_evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, true> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array; SrcXprType = Eigen::ArrayWrapper >, -1, 1, true> >; Functor = assign_op]’ 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array; SrcXprType = Eigen::ArrayWrapper >, -1, 1, true> >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, -1, 1, true> >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; Derived = Eigen::Array]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; Derived = Eigen::Array]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type = Eigen::Array::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits >::Scalar = double]’ 288 | : Base(other.derived()) | ^ data_manipulation.cpp:136:41: required from here 136 | Eigen::ArrayXd r = mat.col(i).array(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Functor = assign_op]’ 780 | DstEvaluatorType dstEvaluator(dst); | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >]’ 836 | call_assignment(dst, src, internal::assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Derived = Eigen::Block, -1, 1, true>]’ 66 | internal::call_assignment(derived(), other.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ data_manipulation.cpp:187:51: required from here 187 | scaled_mat.col(k) = (col.array() - colMean) / colSdev; | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base >, 1, -1, false> > >’ 1384 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, false> >, Eigen::internal::IndexBased, double>’ 1464 | struct unary_evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::ArrayWrapper >, 1, -1, false> >; Functor = assign_op]’ 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::ArrayWrapper >, 1, -1, false> >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, 1, -1, false> >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type = Eigen::Array::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits >::Scalar = double]’ 288 | : Base(other.derived()) | ^ data_manipulation.cpp:368:39: required from here 368 | Eigen::ArrayXd r = x.row(i).array(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator, -1, 1, true> > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:549:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, true>, Eigen::internal::IteratorBased, double>’ 549 | struct unary_evaluator,BlockRows,BlockCols,true>, IteratorBased> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1087:8: required from ‘struct Eigen::internal::block_evaluator, -1, 1, true, false>’ 1087 | struct block_evaluator | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1034:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ 1034 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 687 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:217:9: required from ‘void Eigen::Ref, _Options, _StrideType>::construct(const Expression&, Eigen::internal::true_type) [with Expression = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ 217 | ::new (obj) TPlainObjectType(expr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:190:16: required from ‘Eigen::Ref, _Options, _StrideType>::Ref(const Eigen::SparseMatrixBase&) [with Derived = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ 190 | construct(expr.derived(), typename Traits::template match::type()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 128 | Ref > tmp(other.derived()); | ^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 216 | return operator=(other); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ 1207 | Base::operator=(other); \ | ~~~~~~~~~~~~~~~^~~~~~~ data_manipulation.cpp:409:42: required from here 409 | mat.col(ci) = replacement.col(rep_idx); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 687 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:217:9: required from ‘void Eigen::Ref, _Options, _StrideType>::construct(const Expression&, Eigen::internal::true_type) [with Expression = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ 217 | ::new (obj) TPlainObjectType(expr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:190:16: required from ‘Eigen::Ref, _Options, _StrideType>::Ref(const Eigen::SparseMatrixBase&) [with Derived = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ 190 | construct(expr.derived(), typename Traits::template match::type()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 128 | Ref > tmp(other.derived()); | ^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ 216 | return operator=(other); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ 1207 | Base::operator=(other); \ | ~~~~~~~~~~~~~~~^~~~~~~ data_manipulation.cpp:409:42: required from here 409 | mat.col(ci) = replacement.col(rep_idx); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Matrix; Functor = assign_op]’ 780 | DstEvaluatorType dstEvaluator(dst); | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix]’ 836 | call_assignment(dst, src, internal::assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, -1, -1, false>]’ 66 | internal::call_assignment(derived(), other.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:99:64: required from ‘Eigen::CommaInitializer& Eigen::CommaInitializer::operator,(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; XprType = Eigen::Matrix]’ 98 | m_xpr.template block | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 | (m_row, m_col, other.rows(), other.cols()) = other; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ data_manipulation.cpp:249:17: required from here 249 | mat3 << mat1, mat2; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, const Eigen::Block, -1, 1, true>, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, const Eigen::Block, -1, 1, true>, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, const Eigen::Block, -1, 1, true>, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, const Eigen::Block, -1, 1, true>, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, const Eigen::Block, -1, 1, true>, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, const Eigen::Block, -1, 1, true>, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, 1, true>, Eigen::Dense>’ 372 | typedef typename plain_matrix_type_dense::XprKind, evaluator::Flags>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl >, const Eigen::Block, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>’ 370 | typedef typename nested_eval::type RhsNested; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 478 | return internal::generic_product_impl | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 | ::scaleAndAddTo(dst_vec, a_lhs, a_rhs.col(0), alpha); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, Eigen::Matrix, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true>, Eigen::Matrix, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true>, Eigen::Matrix, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, 1, -1, true>, Eigen::Matrix, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, 1, -1, true>, Eigen::Matrix, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, 1, -1, true>, Eigen::Matrix, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval >, 1, -1, true>, Eigen::Dense>’ 372 | typedef typename plain_matrix_type_dense::XprKind, evaluator::Flags>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl >, 1, -1, true>, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>’ 369 | typedef typename nested_eval::type LhsNested; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 485 | return internal::generic_product_impl | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 | ::scaleAndAddTo(dst_vec, a_lhs.row(0), a_rhs, alpha); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 1>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix, 1> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 1> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 1, 8>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 1, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Matrix, 1>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ 347 | return derived() = Constant(rows(), cols(), val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ 548 | return setConstant(Scalar(0)); | ^~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:444:18: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 1, -1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 1, -1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true>, 1, -1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true>, 1, -1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, true>, 1, -1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, true>, 1, -1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:333: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:306:38: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 306 | typedef typename Traits::LhsPacket LhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; typename Dest::Scalar = double]’ 346 | general_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | ::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 348 | actualLhs.rows(), actualLhs.cols(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | LhsMapper(actualLhs.data(), actualLhs.outerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | RhsMapper(actualRhsPtr, 1), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | dest.data(), dest.col(0).innerStride(), //NOTE if dest is not a vector at compile-time, then dest.innerStride() might be wrong. (bug 1166) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 | actualAlpha); | ~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, true>; Lhs = Eigen::Transpose >; Rhs = const Eigen::Block, -1, 1, true>; Scalar = double]’ 385 | internal::gemv_dense_selector::HasUsableDirectAccess) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 | >::run(actual_lhs, actual_rhs, dst, alpha); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 478 | return internal::generic_product_impl | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 | ::scaleAndAddTo(dst_vec, a_lhs, a_rhs.col(0), alpha); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:310:42: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 310 | typedef typename HalfTraits::LhsPacket LhsPacketHalf; | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; typename Dest::Scalar = double]’ 346 | general_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | ::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 348 | actualLhs.rows(), actualLhs.cols(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | LhsMapper(actualLhs.data(), actualLhs.outerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | RhsMapper(actualRhsPtr, 1), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | dest.data(), dest.col(0).innerStride(), //NOTE if dest is not a vector at compile-time, then dest.innerStride() might be wrong. (bug 1166) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 | actualAlpha); | ~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, true>; Lhs = Eigen::Transpose >; Rhs = const Eigen::Block, -1, 1, true>; Scalar = double]’ 385 | internal::gemv_dense_selector::HasUsableDirectAccess) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 | >::run(actual_lhs, actual_rhs, dst, alpha); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 478 | return internal::generic_product_impl | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 | ::scaleAndAddTo(dst_vec, a_lhs, a_rhs.col(0), alpha); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:314:45: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 314 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; typename Dest::Scalar = double]’ 346 | general_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | ::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 348 | actualLhs.rows(), actualLhs.cols(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | LhsMapper(actualLhs.data(), actualLhs.outerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | RhsMapper(actualRhsPtr, 1), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | dest.data(), dest.col(0).innerStride(), //NOTE if dest is not a vector at compile-time, then dest.innerStride() might be wrong. (bug 1166) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 | actualAlpha); | ~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, true>; Lhs = Eigen::Transpose >; Rhs = const Eigen::Block, -1, 1, true>; Scalar = double]’ 385 | internal::gemv_dense_selector::HasUsableDirectAccess) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 | >::run(actual_lhs, actual_rhs, dst, alpha); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 478 | return internal::generic_product_impl | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 | ::scaleAndAddTo(dst_vec, a_lhs, a_rhs.col(0), alpha); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 1, -1, true>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 1, -1, true> >’ 52 | template class Transpose | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, true>; U = Eigen::Block, -1, 1, true>, -1, 1, true>; ResScalar = double]’ 50 | return a.transpose().template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 1, -1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 1, -1, true> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true>, 1, -1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true>, 1, -1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 1, -1, true>, 1, -1, true>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 1, -1, true>, 1, -1, true> >’ 52 | template class Transpose | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, true>, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ 50 | return a.transpose().template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false> >, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:330: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:147:40: required from ‘void Eigen::internal::evaluateProductBlockingSizesHeuristic(Index&, Index&, Index&, Index) [with LhsScalar = double; RhsScalar = double; int KcFactor = 1; Index = long int]’ 147 | typedef typename Traits::ResScalar ResScalar; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:342:81: required from ‘void Eigen::internal::computeProductBlockingSizes(Index&, Index&, Index&, Index) [with LhsScalar = double; RhsScalar = double; int KcFactor = 1; Index = long int]’ 342 | evaluateProductBlockingSizesHeuristic(k, m, n, num_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:355:66: required from ‘Eigen::internal::gemm_blocking_space::gemm_blocking_space(Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index, bool) [with int StorageOrder = 0; _LhsScalar = double; _RhsScalar = double; int MaxRows = -1; int MaxCols = -1; int MaxDepth = -1; int KcFactor = 1; Eigen::Index = long int]’ 355 | computeProductBlockingSizes(this->m_kc, this->m_mc, this->m_nc, num_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:507:18: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 507 | BlockingType blocking(dst.rows(), dst.cols(), lhs.cols(), 1, true); | ^~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1080:42: required from ‘struct Eigen::internal::gebp_kernel, 4, 4, false, false>’ 1080 | typedef typename HalfTraits::LhsPacket LhsPacketHalf; | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:82:107: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ 82 | gebp_kernel gebp; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ 230 | Gemm::run(rows, cols, m_lhs.cols(), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &m_lhs.coeffRef(row,0), m_lhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | &m_rhs.coeffRef(0,col), m_rhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | (Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | m_actualAlpha, m_blocking, info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ 114 | func(0,rows, 0,cols); | ~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 508 | internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | (GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1085:45: required from ‘struct Eigen::internal::gebp_kernel, 4, 4, false, false>’ 1085 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:82:107: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ 82 | gebp_kernel gebp; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ 230 | Gemm::run(rows, cols, m_lhs.cols(), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &m_lhs.coeffRef(row,0), m_lhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | &m_rhs.coeffRef(0,col), m_rhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | (Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | m_actualAlpha, m_blocking, info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ 114 | func(0,rows, 0,cols); | ~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 508 | internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | (GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:184:17: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ 184 | pack_lhs(blockA, lhs.getSubMapper(i2,k2), actual_kc, actual_mc); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ 230 | Gemm::run(rows, cols, m_lhs.cols(), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &m_lhs.coeffRef(row,0), m_lhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | &m_rhs.coeffRef(0,col), m_rhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | (Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | m_actualAlpha, m_blocking, info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ 114 | func(0,rows, 0,cols); | ~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 508 | internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | (GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2256:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2256 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2258:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2258 | HalfPacketSize = unpacket_traits::size, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2259 | QuarterPacketSize = unpacket_traits::size, | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2298 | PacketBlock kernel_half; | ^~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2304 | PacketBlock kernel_quarter; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = false]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:195:21: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ 195 | pack_rhs(blockB, rhs.getSubMapper(k2,j2), actual_kc, actual_nc); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ 230 | Gemm::run(rows, cols, m_lhs.cols(), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &m_lhs.coeffRef(row,0), m_lhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | &m_rhs.coeffRef(0,col), m_rhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | (Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | m_actualAlpha, m_blocking, info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ 114 | func(0,rows, 0,cols); | ~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 508 | internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | (GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; ResScalar = double]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:198:15: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ 198 | gebp(res.getSubMapper(i2, j2), blockA, blockB, actual_mc, actual_kc, actual_nc, alpha); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ 230 | Gemm::run(rows, cols, m_lhs.cols(), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &m_lhs.coeffRef(row,0), m_lhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | &m_rhs.coeffRef(0,col), m_rhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | (Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | m_actualAlpha, m_blocking, info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ 114 | func(0,rows, 0,cols); | ~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ 508 | internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | (GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ 445 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1920:103: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1920 | const int SResPacketHalfSize = unpacket_traits::half>::size; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1921 | const int SResPacketQuarterSize = unpacket_traits::half>::half>::size; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1977:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1977 | typedef typename conditional=8,typename unpacket_traits::half,SResPacket>::type SResPacketHalf; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1978:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1978 | typedef typename conditional=8,typename unpacket_traits::half,SLhsPacket>::type SLhsPacketHalf; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1979:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1979 | typedef typename conditional=8,typename unpacket_traits::half,SRhsPacket>::type SRhsPacketHalf; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1980:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1980 | typedef typename conditional=8,typename unpacket_traits::half,SAccPacket>::type SAccPacketHalf; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, true>, 1, -1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true>, 1, -1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, true>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ 311 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true>, 1, -1, true> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true>, 1, -1, true> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; CoeffReturnType = double; Eigen::Index = long int]’ 606 | return (m_lhs.row(row).transpose().cwiseProduct( m_rhs.col(col) )).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, true>; U = Eigen::Block, -1, 1, true>, -1, 1, true>; ResScalar = double]’ 50 | return a.transpose().template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, true>; Derived = Eigen::Block >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ 84 | return internal::dot_nocheck::run(*this, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, true>, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ 50 | return a.transpose().template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block >, 1, -1, true>, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ 84 | return internal::dot_nocheck::run(*this, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:75: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; CoeffReturnType = double; Eigen::Index = long int]’ 606 | return (m_lhs.row(row).transpose().cwiseProduct( m_rhs.col(col) )).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: required from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator >; SrcEvaluatorTypeT = Eigen::internal::evaluator >, Eigen::Matrix, 1> >; Functor = Eigen::internal::assign_op; int Version = 1; Eigen::Index = long int]’ 654 | m_functor.assignCoeff(m_dst.coeffRef(row,col), m_src.coeff(row,col)); | ~~~~~~~~~~~^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668:16: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 423 | : Base(other.derived()) | ^ data_manipulation.cpp:231:70: required from here 231 | Eigen::MatrixXd cov = (mat.adjoint() * mat) / double(mat.rows() - 1); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, -1, 1, true>; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Block, -1, 1, true>; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, -1, 1, true> >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double; Scalar = double]’ 97 | { return mat.MEMBER(); } \ | ~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ 183 | return m_functor(m_arg.template subVector(index)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775:40: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >]’ 836 | call_assignment(dst, src, internal::assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >; Derived = Eigen::Matrix]’ 779 | internal::call_assignment(this->derived(), other.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 225 | return Base::_set(other); | ~~~~~~~~~~^~~~~~~ data_manipulation.cpp:229:46: required from here 229 | mat = mat.rowwise() - mat.colwise().mean(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fast_NN_dist.cpp -o fast_NN_dist.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c integration.cpp -o integration.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:205, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:174: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:165: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:271: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ integration.cpp:23:1: required from here 23 | ) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ integration.cpp:23:1: required from here 23 | ) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ integration.cpp:23:1: required from here 23 | ) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ 103 | template class Block | ^~~~~ integration.cpp:43:41: required from here 43 | Eigen::VectorXd dist = distances.row(cell); | ~~~~~~~~~~~~~^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ 22 | class SparseTransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ 45 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ integration.cpp:60:53: required from here 60 | Eigen::VectorXd colSums = dist_weights.transpose() * Eigen::VectorXd::Ones(dist_weights.rows()); | ~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ integration.cpp:60:79: required from here 60 | Eigen::VectorXd colSums = dist_weights.transpose() * Eigen::VectorXd::Ones(dist_weights.rows()); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ integration.cpp:60:99: required from here 60 | Eigen::VectorXd colSums = dist_weights.transpose() * Eigen::VectorXd::Ones(dist_weights.rows()); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ integration.cpp:68:61: required from here 68 | Eigen::MatrixXd dist_weights = Eigen::MatrixXd::Constant(integration_matrix_rownames.size(), cells2.size(), min_dist); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_sum, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_sum, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_sum, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>’ 56 | class PartialReduxExpr : public internal::dense_xpr_base< PartialReduxExpr >::type, | ^~~~~~~~~~~~~~~~ integration.cpp:77:57: required from here 77 | Eigen::VectorXd colSums = dist_weights.colwise().sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseView.h:45:7: required from ‘class Eigen::SparseView >’ 45 | class SparseView : public SparseMatrixBase > | ^~~~~~~~~~ integration.cpp:83:41: required from here 83 | return_mat = dist_weights.sparseView(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >, Eigen::SparseMatrix, 2> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:145:7: required from ‘class Eigen::ProductImpl >, Eigen::SparseMatrix, 2, Eigen::Sparse>’ 145 | class ProductImpl : public internal::generic_xpr_base, MatrixXpr, StorageKind>::type | ^~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::SparseMatrix, 2>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ integration.cpp:94:85: required from here 94 | Eigen::SparseMatrix corrected = expression_cells2 - weights.transpose() * integration_matrix; | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2>, Eigen::Sparse>’ 36 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ integration.cpp:94:85: required from here 94 | Eigen::SparseMatrix corrected = expression_cells2 - weights.transpose() * integration_matrix; | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, 1, true>, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ 103 | template class Block | ^~~~~ integration.cpp:140:36: required from here 140 | double res = (query_pca.col(cell) - query_pca.col(i)).norm(); | ~~~~~~~~~~~~~^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ integration.cpp:140:60: required from here 140 | double res = (query_pca.col(cell) - query_pca.col(i)).norm(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:64:51: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >, Eigen::internal::IteratorBased, Eigen::internal::IteratorBased, double, double>’ 64 | typedef typename evaluator::InnerIterator LhsIterator; | ^~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 687 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ integration.cpp:94:85: required from here 94 | Eigen::SparseMatrix corrected = expression_cells2 - weights.transpose() * integration_matrix; | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1040:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::]’ 1040 | SparseMatrix trMat(mat.rows(),mat.cols()); | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1126:103: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&, DupFunctor) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1126 | internal::set_from_triplets, DupFunctor>(begin, end, *this, dup_func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ integration.cpp:59:33: required from here 59 | dist_weights.setFromTriplets(tripletList.begin(), tripletList.end(), [] (const double&, const double &b) { return b; }); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 98 | return numext::real((*this).cwiseAbs2().sum()); | ~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 110 | return numext::sqrt(squaredNorm()); | ^~~~~~~~~~~ integration.cpp:140:67: required from here 140 | double res = (query_pca.col(cell) - query_pca.col(i)).norm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1181 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::]’ 1063 | mat = trMat; | ~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1126:103: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&, DupFunctor) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1126 | internal::set_from_triplets, DupFunctor>(begin, end, *this, dup_func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ integration.cpp:59:33: required from here 59 | dist_weights.setFromTriplets(tripletList.begin(), tripletList.end(), [] (const double&, const double &b) { return b; }); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:883:17: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, 1, -1, false>; Func = assign_op]’ 883 | ActualDstType actualDst(dst); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ integration.cpp:43:46: required from here 43 | Eigen::VectorXd dist = distances.row(cell); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:277: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 98 | return numext::real((*this).cwiseAbs2().sum()); | ~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 110 | return numext::sqrt(squaredNorm()); | ^~~~~~~~~~~ integration.cpp:140:67: required from here 140 | double res = (query_pca.col(cell) - query_pca.col(i)).norm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = assign_op]’ 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, 1, -1, false>; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ integration.cpp:43:46: required from here 43 | Eigen::VectorXd dist = distances.row(cell); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 98 | return numext::real((*this).cwiseAbs2().sum()); | ~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 110 | return numext::sqrt(squaredNorm()); | ^~~~~~~~~~~ integration.cpp:140:67: required from here 140 | double res = (query_pca.col(cell) - query_pca.col(i)).norm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, member_sum, 0>; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ integration.cpp:77:58: required from here 77 | Eigen::VectorXd colSums = dist_weights.colwise().sum(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, -1, 1, true> >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double; Scalar = double]’ 97 | { return mat.MEMBER(); } \ | ~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ 183 | return m_functor(m_arg.template subVector(index)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, member_sum, 0>; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ integration.cpp:77:58: required from here 77 | Eigen::VectorXd colSums = dist_weights.colwise().sum(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, -1, 1, true>; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Block, -1, 1, true>; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, -1, 1, true> >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double; Scalar = double]’ 97 | { return mat.MEMBER(); } \ | ~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ 183 | return m_functor(m_arg.template subVector(index)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, member_sum, 0>; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ integration.cpp:77:58: required from here 77 | Eigen::VectorXd colSums = dist_weights.colwise().sum(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c snn.cpp -o snn.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:205, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:174: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:165: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:271: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ snn.cpp:16:79: required from here 16 | Eigen::SparseMatrix ComputeSNN(Eigen::MatrixXd nn_ranked, double prune) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ snn.cpp:16:79: required from here 16 | Eigen::SparseMatrix ComputeSNN(Eigen::MatrixXd nn_ranked, double prune) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ 22 | class SparseTransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ 45 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ snn.cpp:27:29: required from here 27 | SNN = SNN * (SNN.transpose()); | ~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, Eigen::Transpose >, 2> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:145:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 2, Eigen::Sparse>’ 145 | class ProductImpl : public internal::generic_xpr_base, MatrixXpr, StorageKind>::type | ^~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 2>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ snn.cpp:27:31: required from here 27 | SNN = SNN * (SNN.transpose()); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ 103 | template class Block | ^~~~~ snn.cpp:106:30: required from here 106 | double res = (mat.row(cell) - mat.row(i)).norm(); | ~~~~~~~^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ snn.cpp:106:48: required from here 106 | double res = (mat.row(cell) - mat.row(i)).norm(); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1040:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ 1040 | SparseMatrix trMat(mat.rows(),mat.cols()); | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1110 | internal::set_from_triplets >(begin, end, *this, internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ snn.cpp:26:22: required from here 26 | SNN.setFromTriplets(tripletList.begin(), tripletList.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 98 | return numext::real((*this).cwiseAbs2().sum()); | ~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 110 | return numext::sqrt(squaredNorm()); | ^~~~~~~~~~~ snn.cpp:106:55: required from here 106 | double res = (mat.row(cell) - mat.row(i)).norm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1181 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ 1063 | mat = trMat; | ~~~~^~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1110 | internal::set_from_triplets >(begin, end, *this, internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ snn.cpp:26:22: required from here 26 | SNN.setFromTriplets(tripletList.begin(), tripletList.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseUtil.h:121:8: required from ‘struct Eigen::internal::plain_object_eval, Eigen::Sparse>’ 121 | struct plain_object_eval | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseProduct.h:71:53: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dest&, const Lhs&, const Rhs&, Eigen::SparseShape) [with Dest = Eigen::SparseMatrix; Lhs = Eigen::SparseMatrix; Rhs = Eigen::Transpose >; int ProductType = 8]’ 71 | typedef typename nested_eval::type LhsNested; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseProduct.h:43:11: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dest&, const Lhs&, const Rhs&) [with Dest = Eigen::SparseMatrix; Lhs = Eigen::SparseMatrix; Rhs = Eigen::Transpose >; int ProductType = 8]’ 43 | evalTo(dst, lhs, rhs, typename evaluator_traits::Shape()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseProduct.h:174:51: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::Product&) [with Lhs = Eigen::SparseMatrix; Rhs = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 174 | internal::generic_product_impl::evalTo(dst,src.lhs(),src.rhs()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ snn.cpp:27:31: required from here 27 | SNN = SNN * (SNN.transpose()); | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:277: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 98 | return numext::real((*this).cwiseAbs2().sum()); | ~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 110 | return numext::sqrt(squaredNorm()); | ^~~~~~~~~~~ snn.cpp:106:55: required from here 106 | double res = (mat.row(cell) - mat.row(i)).norm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stats.cpp -o stats.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c valid_pointer.c -o valid_pointer.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Seurat.so ModularityOptimizer.o RModularityOptimizer.o RcppExports.o data_manipulation.o fast_NN_dist.o integration.o snn.o stats.o valid_pointer.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-cran-seurat-5.2.1/src' make[1]: Entering directory '/build/reproducible-path/r-cran-seurat-5.2.1/src' make[1]: Leaving directory '/build/reproducible-path/r-cran-seurat-5.2.1/src' installing to /build/reproducible-path/r-cran-seurat-5.2.1/debian/r-cran-seurat/usr/lib/R/site-library/00LOCK-r-cran-seurat-5.2.1/00new/Seurat/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Seurat) rm -f /build/reproducible-path/r-cran-seurat-5.2.1/debian/r-cran-seurat/usr/lib/R/site-library/Seurat/LICENSE /bin/sh: 1: apt-cache: not found grep-aptavail: command (apt-cache dumpavail) failed (exit status 127) W: Ignoring specified R dependency: R (>= 4.0.0) I: Using r-cran-seuratobject for Depends:SeuratObject (>= 5.0.2) W: Please install devscripts to enable an attempt to create debian package for Recommends:ape. W: Please install devscripts to enable an attempt to create debian package for Recommends:biobase. W: Please install devscripts to enable an attempt to create debian package for Recommends:biocgenerics. I: Using r-cran-data.table for Recommends:data.table W: Please install devscripts to enable an attempt to create debian package for Recommends:deseq2. W: Please install devscripts to enable an attempt to create debian package for Recommends:delayedarray. W: Please install devscripts to enable an attempt to create debian package for Recommends:genomicranges. W: Please install devscripts to enable an attempt to create debian package for Recommends:genomeinfodb. W: Please install devscripts to enable an attempt to create debian package for Recommends:glmgampoi. W: Please install devscripts to enable an attempt to create debian package for Recommends:ggrastr. W: Please install devscripts to enable an attempt to create debian package for Recommends:hdf5r. W: Please install devscripts to enable an attempt to create debian package for Recommends:iranges. W: Please install devscripts to enable an attempt to create debian package for Recommends:limma. W: Please install devscripts to enable an attempt to create debian package for Recommends:metap. W: Please install devscripts to enable an attempt to create debian package for Recommends:mixtools. W: Please install devscripts to enable an attempt to create debian package for Recommends:monocle. W: Please install devscripts to enable an attempt to create debian package for Recommends:rsvd. W: Please install devscripts to enable an attempt to create debian package for Recommends:r.utils. W: Please install devscripts to enable an attempt to create debian package for Recommends:rtracklayer. W: Please install devscripts to enable an attempt to create debian package for Recommends:s4vectors. W: Please install devscripts to enable an attempt to create debian package for Recommends:sf. W: Please install devscripts to enable an attempt to create debian package for Recommends:singlecellexperiment. W: Please install devscripts to enable an attempt to create debian package for Recommends:summarizedexperiment. W: Please install devscripts to enable an attempt to create debian package for Recommends:testthat. W: Please install devscripts to enable an attempt to create debian package for Recommends:vgam. W: Cannot find a debian package for Suggests:arrow W: Cannot find a debian package for Suggests:BPCells W: Cannot find a debian package for Suggests:enrichR W: Cannot find a debian package for Suggests:harmony W: Cannot find a debian package for Suggests:MAST W: Cannot find a debian package for Suggests:presto W: Cannot find a debian package for Suggests:Rfast2 W: Cannot find a debian package for Suggests:sf (>= 1.0.0) I: Using r-cran-cluster for Imports:cluster I: Using r-cran-cowplot for Imports:cowplot I: Using r-cran-fastdummies for Imports:fastDummies I: Using r-cran-fitdistrplus for Imports:fitdistrplus I: Using r-cran-future for Imports:future I: Using r-cran-future.apply for Imports:future.apply I: Using r-cran-generics for Imports:generics (>= 0.1.3) I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 3.3.0) I: Using r-cran-ggrepel for Imports:ggrepel I: Using r-cran-ggridges for Imports:ggridges I: Using r-cran-httr for Imports:httr I: Using r-cran-ica for Imports:ica I: Using r-cran-igraph for Imports:igraph I: Using r-cran-irlba for Imports:irlba I: Using r-cran-jsonlite for Imports:jsonlite I: Using r-cran-kernsmooth for Imports:KernSmooth I: Using r-cran-leidenbase for Imports:leidenbase I: Using r-cran-lifecycle for Imports:lifecycle I: Using r-cran-lmtest for Imports:lmtest I: Using r-cran-mass for Imports:MASS /bin/sh: 1: apt-cache: not found grep-aptavail: command (apt-cache dumpavail) failed (exit status 127) Package r-cran-matrix not found in apt cache at /usr/share/perl5/Debian/Debhelper/Buildsystem/R.pm line 167. make: *** [debian/rules:4: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-06-19T15:11:57Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup Thu, 19 Jun 2025 15:11:57 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 2) +------------------------------------------------------------------------------+ | Summary Thu, 19 Jun 2025 15:12:00 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 20556 Build-Time: 135 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdj7YziV/inputs/r-cran-seurat_5.2.1-5.dsc Machine Architecture: amd64 Package: r-cran-seurat Package-Time: 160 Source-Version: 5.2.1-5 Space: 20556 Status: attempted Version: 5.2.1-5 -------------------------------------------------------------------------------- Finished at 2025-06-19T15:11:57Z Build needed 00:02:40, 20556k disk space E: Build failure (dpkg-buildpackage died with exit 2) sbuild failed