=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdKG4MaY/inputs/hmmer_3.4+dfsg-2_amd64.buildinfo Source: hmmer Version: 3.4+dfsg-2 rebuilderd-worker node: osuosl4-amd64 +------------------------------------------------------------------------------+ | Downloading sources Sun, 22 Jun 2025 03:06:25 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [166 kB] Get:2 https://deb.debian.org/debian sid InRelease [208 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 2s (9,498 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-2.dsc' hmmer_3.4+dfsg-2.dsc 2119 SHA256:28fa8e20c62b6fba8fcfd70c25bcc7d647fe47b871b10b132784660d61b2c413 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg.orig.tar.xz' hmmer_3.4+dfsg.orig.tar.xz 13297988 SHA256:87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-2.debian.tar.xz' hmmer_3.4+dfsg-2.debian.tar.xz 12792 SHA256:5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 hmmer_3.4+dfsg.orig.tar.xz 5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 hmmer_3.4+dfsg-2.debian.tar.xz 28fa8e20c62b6fba8fcfd70c25bcc7d647fe47b871b10b132784660d61b2c413 hmmer_3.4+dfsg-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sun, 22 Jun 2025 03:06:29 +0000 | +------------------------------------------------------------------------------+ Rebuilding hmmer=3.4+dfsg-2 in /srv/rebuilderd/tmp/rebuilderdKG4MaY/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdKG4MaY/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdKG4MaY/inputs/hmmer_3.4+dfsg-2_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdKG4MaY/inputs/hmmer_3.4+dfsg-2_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/hmmer-3.4+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie InRelease [156 kB] Get:2 http://snapshot.debian.org/archive/debian/20240222T093007Z trixie InRelease [157 kB] Get:3 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 Packages [9012 kB] Get:4 http://snapshot.debian.org/archive/debian/20240222T093007Z trixie/main amd64 Packages [9165 kB] Fetched 18.5 MB in 2s (7925 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20230919T204833Z/dists/trixie/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20240222T093007Z/dists/trixie/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libblkid1 amd64 2.39.2-1 [158 kB] Fetched 158 kB in 0s (7878 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl6i0fowe/libblkid1_2.39.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 base-passwd amd64 3.6.1 [60.0 kB] Fetched 60.0 kB in 0s (3130 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuz8t3szq/base-passwd_3.6.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libperl5.36 amd64 5.36.0-9 [4206 kB] Fetched 4206 kB in 0s (74.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5zu2lha0/libperl5.36_5.36.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 dpkg amd64 1.22.0 [1569 kB] Fetched 1569 kB in 0s (34.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjmq5yldg/dpkg_1.22.0_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libattr1 amd64 1:2.5.1-4 [22.2 kB] Fetched 22.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.1-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp97pvc97f/libattr1_2.5.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 liblz4-1 amd64 1.9.4-1 [62.9 kB] Fetched 62.9 kB in 0s (3588 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphqrv2jg1/liblz4-1_1.9.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 zlib1g amd64 1:1.2.13.dfsg-3 [87.0 kB] Fetched 87.0 kB in 0s (4246 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.2.13.dfsg-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp10dprq53/zlib1g_1.2.13.dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libatomic1 amd64 13.2.0-3 [9284 B] Fetched 9284 B in 0s (776 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps2n1yj_o/libatomic1_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libsub-override-perl all 0.09-4 [9304 B] Fetched 9304 B in 0s (907 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4xalvyb/libsub-override-perl_0.09-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Fetched 85.2 kB in 0s (5798 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzb6sr0zz/libtirpc3_1.3.3+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgprofng0 amd64 2.41-5 [766 kB] Fetched 766 kB in 0s (19.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_3w9sbuk/libgprofng0_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 findutils amd64 4.9.0-5 [636 kB] Fetched 636 kB in 0s (22.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsw1ec12c/findutils_4.9.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpam-runtime all 1.5.2-7 [136 kB] Fetched 136 kB in 0s (10.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95ga3f2n/libpam-runtime_1.5.2-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 mawk amd64 1.3.4.20230808-1 [135 kB] Fetched 135 kB in 0s (4745 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsk_4vg0f/mawk_1.3.4.20230808-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 bsdextrautils amd64 2.39.2-1 [88.7 kB] Fetched 88.7 kB in 0s (2249 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgo2dqo4q/bsdextrautils_2.39.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libc6-dev amd64 2.37-8 [1902 kB] Fetched 1902 kB in 0s (36.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl1n4dxtq/libc6-dev_2.37-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 liblzma5 amd64 5.4.4-0.1 [229 kB] Fetched 229 kB in 0s (7829 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuscb2pcp/liblzma5_5.4.4-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpython3.11-stdlib amd64 3.11.5-3 [1802 kB] Fetched 1802 kB in 0s (42.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr8z8w_eb/libpython3.11-stdlib_3.11.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 gcc-13 amd64 13.2.0-3 [19.6 MB] Fetched 19.6 MB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpduhkofeu/gcc-13_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Fetched 287 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptbsb_6cy/m4_1.4.19-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Fetched 686 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvslxlbrz/libxml2_2.9.14+dfsg-1.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libstdc++-13-dev amd64 13.2.0-3 [2222 kB] Fetched 2222 kB in 0s (32.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw219lou_/libstdc++-13-dev_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libcrypt-dev amd64 1:4.4.36-2 [118 kB] Fetched 118 kB in 0s (8980 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.36-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdtnrivrf/libcrypt-dev_4.4.36-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libdb5.3 amd64 5.3.28+dfsg2-2 [696 kB] Fetched 696 kB in 0s (23.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjh_uu3iy/libdb5.3_5.3.28+dfsg2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Fetched 20.1 kB in 0s (762 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5zu52uaw/libcom-err2_1.47.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libkrb5support0 amd64 1.20.1-3 [32.3 kB] Fetched 32.3 kB in 0s (1986 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr4lokuff/libkrb5support0_1.20.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 bash amd64 5.2.15-2+b4 [1490 kB] Fetched 1490 kB in 0s (40.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp07mdogw/bash_5.2.15-2+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libseccomp2 amd64 2.5.4-1+b3 [46.6 kB] Fetched 46.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxjjkebjk/libseccomp2_2.5.4-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libsmartcols1 amd64 2.39.2-1 [116 kB] Fetched 116 kB in 0s (3685 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuz1ljc11/libsmartcols1_2.39.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 python3-minimal amd64 3.11.4-5+b1 [26.5 kB] Fetched 26.5 kB in 0s (1316 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwwgdeywx/python3-minimal_3.11.4-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (3566 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvu8jrz7h/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libaudit1 amd64 1:3.1.1-1 [47.3 kB] Fetched 47.3 kB in 0s (1553 kB/s) dpkg-name: info: moved 'libaudit1_1%3a3.1.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpc5u2332f/libaudit1_3.1.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libtsan2 amd64 13.2.0-3 [2335 kB] Fetched 2335 kB in 0s (40.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgp25hp5v/libtsan2_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 perl amd64 5.36.0-9 [239 kB] Fetched 239 kB in 0s (5388 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpshdqr_3r/perl_5.36.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Fetched 99.0 kB in 0s (5451 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_6f9puw0/libexpat1_2.5.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpython3.11-minimal amd64 3.11.5-3 [815 kB] Fetched 815 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptim0lc2r/libpython3.11-minimal_3.11.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libisl23 amd64 0.26-3 [700 kB] Fetched 700 kB in 0s (15.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi0s_we81/libisl23_0.26-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 python3 amd64 3.11.4-5+b1 [26.5 kB] Fetched 26.5 kB in 0s (1802 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpux2av5t9/python3_3.11.4-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 patch amd64 2.7.6-7 [128 kB] Fetched 128 kB in 0s (7902 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcw7ennet/patch_2.7.6-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgomp1 amd64 13.2.0-3 [131 kB] Fetched 131 kB in 0s (7501 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgbwu9gs2/libgomp1_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Fetched 51.5 kB in 0s (3077 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0glaxx_l/libmpc3_1.3.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libssl3 amd64 3.0.10-1 [2014 kB] Fetched 2014 kB in 0s (47.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptlhtojyh/libssl3_3.0.10-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3qximux9/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Fetched 7676 B in 0s (529 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp619liovl/libtext-glob-perl_0.11-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 hostname amd64 3.23+nmu1 [10.5 kB] Fetched 10.5 kB in 0s (667 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl25wuobj/hostname_3.23+nmu1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 gettext-base amd64 0.21-13+b1 [161 kB] Fetched 161 kB in 0s (6434 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4tb_2wx5/gettext-base_0.21-13+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (24.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zhh2uvm/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-3 [134 kB] Fetched 134 kB in 0s (7397 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbo4u4bi6/libgssapi-krb5-2_1.20.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 liblsan0 amd64 13.2.0-3 [1102 kB] Fetched 1102 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzwddglvr/liblsan0_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgcrypt20 amd64 1.10.2-2 [704 kB] Fetched 704 kB in 0s (23.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqyxeu9i/libgcrypt20_1.10.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Fetched 38.5 kB in 0s (2408 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkieol1_y/libpipeline1_1.5.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgcc-s1 amd64 13.2.0-3 [57.7 kB] Fetched 57.7 kB in 0s (4273 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_m16hpuo/libgcc-s1_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 debhelper all 13.11.6 [952 kB] Fetched 952 kB in 0s (28.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcu14m5r_/debhelper_13.11.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Fetched 67.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw0myqx7f/libuchardet0_0.0.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libaudit-common all 1:3.1.1-1 [10.8 kB] Fetched 10.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a3.1.1-1_all.deb' to '/srv/rebuilderd/tmp/tmpk8r5v8ra/libaudit-common_3.1.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libdivsufsort-dev amd64 2.0.1-5 [19.1 kB] Fetched 19.1 kB in 0s (1569 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphsaxdakz/libdivsufsort-dev_2.0.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 autoconf all 2.71-3 [332 kB] Fetched 332 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4odja8k9/autoconf_2.71-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libsystemd0 amd64 254.1-3 [354 kB] Fetched 354 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwnsl506p/libsystemd0_254.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libcrypt1 amd64 1:4.4.36-2 [89.7 kB] Fetched 89.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.36-2_amd64.deb' to '/srv/rebuilderd/tmp/tmp8nhobh87/libcrypt1_4.4.36-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libcap-ng0 amd64 0.8.3-1+b3 [17.1 kB] Fetched 17.1 kB in 0s (1538 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphgsqdag9/libcap-ng0_0.8.3-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 man-db amd64 2.11.2-3 [1386 kB] Fetched 1386 kB in 0s (31.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp27jp0ky0/man-db_2.11.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Fetched 6332 B in 0s (550 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn8f9pcfh/libnumber-compare-perl_0.03-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpam0g amd64 1.5.2-7 [66.7 kB] Fetched 66.7 kB in 0s (4354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm21nnuz6/libpam0g_1.5.2-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 groff-base amd64 1.23.0-2 [1176 kB] Fetched 1176 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw0h6n0ij/groff-base_1.23.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libhwasan0 amd64 13.2.0-3 [1154 kB] Fetched 1154 kB in 0s (30.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphswxvqe5/libhwasan0_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 readline-common all 8.2-1.3 [69.0 kB] Fetched 69.0 kB in 0s (2383 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3i_xckll/readline-common_8.2-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgpg-error0 amd64 1.47-2 [77.6 kB] Fetched 77.6 kB in 0s (5018 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm95a6cbi/libgpg-error0_1.47-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libsqlite3-0 amd64 3.43.1-1 [872 kB] Fetched 872 kB in 0s (25.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7kiqvw7o/libsqlite3-0_3.43.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libmagic-mgc amd64 1:5.45-2 [314 kB] Fetched 314 kB in 0s (7503 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-2_amd64.deb' to '/srv/rebuilderd/tmp/tmp8p4d0bvw/libmagic-mgc_5.45-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Fetched 191 kB in 0s (8765 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl1l3psb8/libtirpc-dev_1.3.3+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 gettext amd64 0.21-13+b1 [1301 kB] Fetched 1301 kB in 0s (73.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp16rv6sq/gettext_0.21-13+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 binutils-x86-64-linux-gnu amd64 2.41-5 [2218 kB] Fetched 2218 kB in 0s (42.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_s9na8w/binutils-x86-64-linux-gnu_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 build-essential amd64 12.10 [4516 B] Fetched 4516 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp59np9m0k/build-essential_12.10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 ncurses-base all 6.4+20230625-2 [265 kB] Fetched 265 kB in 0s (6359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcmlnfbh6/ncurses-base_6.4+20230625-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libmount1 amd64 2.39.2-1 [189 kB] Fetched 189 kB in 0s (7938 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv73ovamz/libmount1_2.39.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 bsdutils amd64 1:2.39.2-1 [96.1 kB] Fetched 96.1 kB in 0s (4755 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.39.2-1_amd64.deb' to '/srv/rebuilderd/tmp/tmptao_aatf/bsdutils_2.39.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20240222T093007Z trixie/main amd64 libmpfr6 amd64 4.2.1-1 [713 kB] Fetched 713 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjmzqj48f/libmpfr6_4.2.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpam-modules-bin amd64 1.5.2-7 [50.7 kB] Fetched 50.7 kB in 0s (2710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1p65219z/libpam-modules-bin_1.5.2-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libncursesw6 amd64 6.4+20230625-2 [134 kB] Fetched 134 kB in 0s (7744 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp50yuhq5i/libncursesw6_6.4+20230625-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpython3-stdlib amd64 3.11.4-5+b1 [9492 B] Fetched 9492 B in 0s (613 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1k2ke2x0/libpython3-stdlib_3.11.4-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 linux-libc-dev amd64 6.4.13-1 [1829 kB] Fetched 1829 kB in 0s (24.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdvp6x7mn/linux-libc-dev_6.4.13-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwfzrjprc/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 base-files amd64 13 [70.6 kB] Fetched 70.6 kB in 0s (6600 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpar1iyjs3/base-files_13_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libasan8 amd64 13.2.0-3 [2560 kB] Fetched 2560 kB in 0s (5168 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp6_o2_rk/libasan8_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libquadmath0 amd64 13.2.0-3 [145 kB] Fetched 145 kB in 0s (7886 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpix8in_4u/libquadmath0_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libuuid1 amd64 2.39.2-1 [29.2 kB] Fetched 29.2 kB in 0s (1869 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpltzvjn02/libuuid1_2.39.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Fetched 66.4 kB in 0s (4156 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpssuqoyah/libnsl-dev_1.3.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libffi8 amd64 3.4.4-1 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ki5_a5j/libffi8_3.4.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libtool all 2.4.7-7 [517 kB] Fetched 517 kB in 0s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ufspwn5/libtool_2.4.7-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpswme2h3z/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 g++ amd64 4:13.2.0-1 [1356 B] Fetched 1356 B in 0s (98.9 kB/s) dpkg-name: info: moved 'g++_4%3a13.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpbigf6nxy/g++_13.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libdpkg-perl all 1.22.0 [641 kB] Fetched 641 kB in 0s (18.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3awpubql/libdpkg-perl_1.22.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 gcc amd64 4:13.2.0-1 [5224 B] Fetched 5224 B in 0s (339 kB/s) dpkg-name: info: moved 'gcc_4%3a13.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpm11nl5re/gcc_13.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Fetched 48.2 kB in 0s (2889 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0cutyv97/libgdbm-compat4_1.23-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Fetched 166 kB in 0s (6833 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3qnzd79m/libreadline8_8.2-1.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 bzip2 amd64 1.0.8-5+b1 [49.8 kB] Fetched 49.8 kB in 0s (3152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90qdo4t5/bzip2_1.0.8-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 cpp amd64 4:13.2.0-1 [6992 B] Fetched 6992 B in 0s (435 kB/s) dpkg-name: info: moved 'cpp_4%3a13.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpn2zxt3vw/cpp_13.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libc6 amd64 2.37-8 [2752 kB] Fetched 2752 kB in 0s (57.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphc7d8lxv/libc6_2.37-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 init-system-helpers all 1.65.2 [49.8 kB] Fetched 49.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx0og04yi/init-system-helpers_1.65.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 binutils-common amd64 2.41-5 [2504 kB] Fetched 2504 kB in 0s (5095 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbtyc3r6u/binutils-common_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Fetched 26.6 kB in 0s (1531 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplzpxn8cb/libfile-find-rule-perl_0.34-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libubsan1 amd64 13.2.0-3 [1010 kB] Fetched 1010 kB in 0s (27.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxtg7tvw/libubsan1_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 binutils amd64 2.41-5 [80.0 kB] Fetched 80.0 kB in 0s (6948 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplmjfbc8q/binutils_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libkrb5-3 amd64 1.20.1-3 [333 kB] Fetched 333 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvcv2l8d1/libkrb5-3_1.20.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Fetched 19.4 kB in 0s (768 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp38v6finn/libfile-stripnondeterminism-perl_1.13.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 debianutils amd64 5.12 [104 kB] Fetched 104 kB in 0s (5526 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppsi74loo/debianutils_5.12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 coreutils amd64 9.1-1 [2897 kB] Fetched 2897 kB in 0s (54.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpozzid8sd/coreutils_9.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libstdc++6 amd64 13.2.0-3 [694 kB] Fetched 694 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl6h4qkay/libstdc++6_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libicu72 amd64 72.1-3 [9376 kB] Fetched 9376 kB in 0s (87.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1j2vwbn9/libicu72_72.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libdebhelper-perl all 13.11.6 [81.9 kB] Fetched 81.9 kB in 0s (4619 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpha7bhvl0/libdebhelper-perl_13.11.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libbinutils amd64 2.41-5 [512 kB] Fetched 512 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptp36_o0c/libbinutils_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libitm1 amd64 13.2.0-3 [26.1 kB] Fetched 26.1 kB in 0s (2186 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9l5s4942/libitm1_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Fetched 14.0 kB in 0s (802 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppycc6iio/libtirpc-common_1.3.3+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 usr-is-merged all 37 [5560 B] Fetched 5560 B in 0s (76.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpakc4kkpd/usr-is-merged_37_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Fetched 8620 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmhet0s4l/dh-strip-nondeterminism_1.13.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libc-dev-bin amd64 2.37-8 [46.0 kB] Fetched 46.0 kB in 0s (2676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7sn7eu0r/libc-dev-bin_2.37-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 file amd64 1:5.45-2 [42.8 kB] Fetched 42.8 kB in 0s (2969 kB/s) dpkg-name: info: moved 'file_1%3a5.45-2_amd64.deb' to '/srv/rebuilderd/tmp/tmp1hun8xb_/file_5.45-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpam-modules amd64 1.5.2-7 [265 kB] Fetched 265 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaxo5y7af/libpam-modules_1.5.2-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Fetched 8808 B in 0s (355 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpywaqned_/libkeyutils1_1.6.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libdebconfclient0 amd64 0.270 [9900 B] Fetched 9900 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp26h1zsoi/libdebconfclient0_0.270_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libudev1 amd64 254.1-3 [119 kB] Fetched 119 kB in 0s (7127 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppoagc5qq/libudev1_254.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 tar amd64 1.34+dfsg-1.2 [836 kB] Fetched 836 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcvuoy6jw/tar_1.34+dfsg-1.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libselinux1 amd64 3.5-1 [73.9 kB] Fetched 73.9 kB in 0s (4357 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpevshuafz/libselinux1_3.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libacl1 amd64 2.3.1-3 [31.5 kB] Fetched 31.5 kB in 0s (1877 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdahjrjky/libacl1_2.3.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 gcc-13-base amd64 13.2.0-3 [39.7 kB] Fetched 39.7 kB in 0s (1952 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphms33a_g/gcc-13-base_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 gzip amd64 1.12-1 [140 kB] Fetched 140 kB in 0s (7220 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdf5rspig/gzip_1.12-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 login amd64 1:4.13+dfsg1-1+b1 [616 kB] Fetched 616 kB in 0s (21.5 MB/s) dpkg-name: info: moved 'login_1%3a4.13+dfsg1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp4lxocmdn/login_4.13+dfsg1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libmagic1 amd64 1:5.45-2 [105 kB] Fetched 105 kB in 0s (8167 kB/s) dpkg-name: info: moved 'libmagic1_1%3a5.45-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpg1wyqf86/libmagic1_5.45-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libk5crypto3 amd64 1.20.1-3 [79.1 kB] Fetched 79.1 kB in 0s (2948 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqm103h3/libk5crypto3_1.20.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 cpp-13 amd64 13.2.0-3 [9906 kB] Fetched 9906 kB in 0s (43.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78gti5tl/cpp-13_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 debconf all 1.5.82 [121 kB] Fetched 121 kB in 0s (3870 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpna2ocstv/debconf_1.5.82_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 grep amd64 3.11-3 [431 kB] Fetched 431 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfkqq8bwq/grep_3.11-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libmd0 amd64 1.1.0-1 [35.5 kB] Fetched 35.5 kB in 0s (3447 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpklw88rrn/libmd0_1.1.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 perl-modules-5.36 all 5.36.0-9 [2815 kB] Fetched 2815 kB in 0s (34.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdar1x66s/perl-modules-5.36_5.36.0-9_all.deb' Downloading dependency 1 of 173: libblkid1:amd64=2.39.2-1 Downloading dependency 2 of 173: base-passwd:amd64=3.6.1 Downloading dependency 3 of 173: libperl5.36:amd64=5.36.0-9 Downloading dependency 4 of 173: dpkg:amd64=1.22.0 Downloading dependency 5 of 173: libattr1:amd64=1:2.5.1-4 Downloading dependency 6 of 173: liblz4-1:amd64=1.9.4-1 Downloading dependency 7 of 173: zlib1g:amd64=1:1.2.13.dfsg-3 Downloading dependency 8 of 173: libatomic1:amd64=13.2.0-3 Downloading dependency 9 of 173: libsub-override-perl:amd64=0.09-4 Downloading dependency 10 of 173: libtirpc3:amd64=1.3.3+ds-1 Downloading dependency 11 of 173: libgprofng0:amd64=2.41-5 Downloading dependency 12 of 173: findutils:amd64=4.9.0-5 Downloading dependency 13 of 173: libpam-runtime:amd64=1.5.2-7 Downloading dependency 14 of 173: mawk:amd64=1.3.4.20230808-1 Downloading dependency 15 of 173: bsdextrautils:amd64=2.39.2-1 Downloading dependency 16 of 173: libc6-dev:amd64=2.37-8 Downloading dependency 17 of 173: liblzma5:amd64=5.4.4-0.1 Downloading dependency 18 of 173: libpython3.11-stdlib:amd64=3.11.5-3 Downloading dependency 19 of 173: gcc-13:amd64=13.2.0-3 Downloading dependency 20 of 173: m4:amd64=1.4.19-4 Downloading dependency 21 of 173: libxml2:amd64=2.9.14+dfsg-1.3 Downloading dependency 22 of 173: libstdc++-13-dev:amd64=13.2.0-3 Downloading dependency 23 of 173: libcrypt-dev:amd64=1:4.4.36-2 Downloading dependency 24 of 173: libdb5.3:amd64=5.3.28+dfsg2-2 Downloading dependency 25 of 173: libcom-err2:amd64=1.47.0-2+b1 Downloading dependency 26 of 173: libkrb5support0:amd64=1.20.1-3 Downloading dependency 27 of 173: bash:amd64=5.2.15-2+b4 Downloading dependency 28 of 173: libseccomp2:amd64=2.5.4-1+b3 Downloading dependency 29 of 173: libsmartcols1:amd64=2.39.2-1 Downloading dependency 30 of 173: python3-minimal:amd64=3.11.4-5+b1 Downloading dependency 31 of 173: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 32 of 173: libaudit1:amd64=1:3.1.1-1 Downloading dependency 33 of 173: libtsan2:amd64=13.2.0-3 Downloading dependency 34 of 173: perl:amd64=5.36.0-9 Downloading dependency 35 of 173: libexpat1:amd64=2.5.0-2 Downloading dependency 36 of 173: libpython3.11-minimal:amd64=3.11.5-3 Downloading dependency 37 of 173: libisl23:amd64=0.26-3 Downloading dependency 38 of 173: python3:amd64=3.11.4-5+b1 Downloading dependency 39 of 173: patch:amd64=2.7.6-7 Downloading dependency 40 of 173: libgomp1:amd64=13.2.0-3 Downloading dependency 41 of 173: libmpc3:amd64=1.3.1-1 Downloading dependency 42 of 173: libssl3:amd64=3.0.10-1 Downloading dependency 43 of 173: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 44 of 173: libtext-glob-perl:amd64=0.11-3 Downloading dependency 45 of 173: hostname:amd64=3.23+nmu1 Downloading dependency 46 of 173: gettext-base:amd64=0.21-13+b1 Downloading dependency 47 of 173: po-debconf:amd64=1.0.21+nmu1 Downloading dependency 48 of 173: libgssapi-krb5-2:amd64=1.20.1-3 Downloading dependency 49 of 173: liblsan0:amd64=13.2.0-3 Downloading dependency 50 of 173: libgcrypt20:amd64=1.10.2-2 Downloading dependency 51 of 173: libpipeline1:amd64=1.5.7-1 Downloading dependency 52 of 173: libgcc-s1:amd64=13.2.0-3 Downloading dependency 53 of 173: debhelper:amd64=13.11.6 Downloading dependency 54 of 173: libuchardet0:amd64=0.0.7-1 Downloading dependency 55 of 173: libaudit-common:amd64=1:3.1.1-1 Downloading dependency 56 of 173: libdivsufsort-dev:amd64=2.0.1-5 Downloading dependency 57 of 173: autoconf:amd64=2.71-3 Downloading dependency 58 of 173: libsystemd0:amd64=254.1-3 Downloading dependency 59 of 173: libcrypt1:amd64=1:4.4.36-2 Downloading dependency 60 of 173: libcap-ng0:amd64=0.8.3-1+b3 Downloading dependency 61 of 173: man-db:amd64=2.11.2-3 Downloading dependency 62 of 173: libnumber-compare-perl:amd64=0.03-3 Downloading dependency 63 of 173: libpam0g:amd64=1.5.2-7 Downloading dependency 64 of 173: groff-base:amd64=1.23.0-2 Downloading dependency 65 of 173: libhwasan0:amd64=13.2.0-3 Downloading dependency 66 of 173: readline-common:amd64=8.2-1.3 Downloading dependency 67 of 173: libgpg-error0:amd64=1.47-2 Downloading dependency 68 of 173: libsqlite3-0:amd64=3.43.1-1 Downloading dependency 69 of 173: libmagic-mgc:amd64=1:5.45-2 Downloading dependency 70 of 173: libtirpc-dev:amd64=1.3.3+ds-1 Downloading dependency 71 of 173: gettext:amd64=0.21-13+b1 Downloading dependency 72 of 173: binutils-x86-64-linux-gnu:amd64=2.41-5 Downloading dependency 73 of 173: build-essential:amd64=12.10 Downloading dependency 74 of 173: ncurses-base:amd64=6.4+20230625-2 Downloading dependency 75 of 173: libmount1:amd64=2.39.2-1 Downloading dependency 76 of 173: bsdutils:amd64=1:2.39.2-1 Downloading dependency 77 of 173: libmpfr6:amd64=4.2.1-1 Downloading dependency 78 of 173: libpam-modules-bin:amd64=1.5.2-7 Downloading dependency 79 of 173: libncursesw6:amd64=6.4+20230625-2 Downloading dependency 80 of 173: libpython3-stdlib:amd64=3.11.4-5+b1 Downloading dependency 81 of 173: linux-libc-dev:amd64=6.4.13-1 Downloading dependency 82 of 173: autotools-dev:amd64=20220109.1 Downloading dependency 83 of 173: base-files:amd64=13 Downloading dependency 84 of 173: libasan8:amd64=13.2.0-3 Downloading dependency 85 of 173: libquadmath0:amd64=13.2.0-3 Downloading dependency 86 of 173: libuuid1:amd64=2.39.2-1 Downloading dependency 87 of 173: libnsl-dev:amd64=1.3.0-2 Downloading dependency 88 of 173: libffi8:amd64=3.4.4-1 Downloading dependency 89 of 173: libtool:amd64=2.4.7-7 Downloading dependency 90 of 173: dh-autoreconf:amd64=20 Downloading dependency 91 of 173: g++:amd64=4:13.2.0-1 Downloading dependency 92 of 173: libdpkg-perl:amd64=1.22.0 Downloading dependency 93 of 173: gcc:amd64=4:13.2.0-1 Downloading dependency 94 of 173: libgdbm-compat4:amd64=1.23-3 Downloading dependency 95 of 173: libreadline8:amd64=8.2-1.3 Downloading dependency 96 of 173: bzip2:amd64=1.0.8-5+b1 Downloading dependency 97 of 173: cpp:amd64=4:13.2.0-1 Downloading dependency 98 of 173: libc6:amd64=2.37-8 Downloading dependency 99 of 173: init-system-helpers:amd64=1.65.2 Downloading dependency 100 of 173: binutils-common:amd64=2.41-5 Downloading dependency 101 of 173: libfile-find-rule-perl:amd64=0.34-3 Downloading dependency 102 of 173: libubsan1:amd64=13.2.0-3 Downloading dependency 103 of 173: binutils:amd64=2.41-5 Downloading dependency 104 of 173: libkrb5-3:amd64=1.20.1-3 Downloading dependency 105 of 173: libfile-stripnondeterminism-perl:amd64=1.13.1-1 Downloading dependency 106 of 173: debianutils:amd64=5.12 Downloading dependency 107 of 173: coreutils:amd64=9.1-1 Downloading dependency 108 of 173: libstdc++6:amd64=13.2.0-3 Downloading dependency 109 of 173: libicu72:amd64=72.1-3 Downloading dependency 110 of 173: libdebhelper-perl:amd64=13.11.6 Downloading dependency 111 of 173: libbinutils:amd64=2.41-5 Downloading dependency 112 of 173: libitm1:amd64=13.2.0-3 Downloading dependency 113 of 173: libtirpc-common:amd64=1.3.3+ds-1 Downloading dependency 114 of 173: usr-is-merged:amd64=37 Downloading dependency 115 of 173: dh-strip-nondeterminism:amd64=1.13.1-1 Downloading dependency 116 of 173: libc-dev-bin:amd64=2.37-8 Downloading dependency 117 of 173: file:amd64=1:5.45-2 Downloading dependency 118 of 173: libpam-modules:amd64=1.5.2-7 Downloading dependency 119 of 173: libkeyutils1:amd64=1.6.3-2 Downloading dependency 120 of 173: libdebconfclient0:amd64=0.270 Downloading dependency 121 of 173: libudev1:amd64=254.1-3 Downloading dependency 122 of 173: tar:amd64=1.34+dfsg-1.2 Downloading dependency 123 of 173: libselinux1:amd64=3.5-1 Downloading dependency 124 of 173: libacl1:amd64=2.3.1-3 Downloading dependency 125 of 173: gcc-13-base:amd64=13.2.0-3 Downloading dependency 126 of 173: gzip:amd64=1.12-1 Downloading dependency 127 of 173: login:amd64=1:4.13+dfsg1-1+b1 Downloading dependency 128 of 173: libmagic1:amd64=1:5.45-2 Downloading dependency 129 of 173: libk5crypto3:amd64=1.20.1-3 Downloading dependency 130 of 173: cpp-13:amd64=13.2.0-3 Downloading dependency 131 of 173: debconf:amd64=1.5.82 Downloading dependency 132 of 173: grep:amd64=3.11-3 Downloading dependency 133 of 173: libmd0:amd64=1.1.0-1 Downloading dependency 134 of 173: perl-modules-5.36:amd64=5.36.0-9 Downloading dependency 135 of 173: perl-base:amd64=5.36.0-9Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 perl-base amd64 5.36.0-9 [1602 kB] Fetched 1602 kB in 0s (35.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5snnxquz/perl-base_5.36.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Fetched 44.7 kB in 0s (1643 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpafs8m5fd/libdivsufsort3_2.0.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libelf1 amd64 0.189-4 [174 kB] Fetched 174 kB in 0s (7616 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_fthfwt/libelf1_0.189-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libunistring5 amd64 1.1-2 [421 kB] Fetched 421 kB in 0s (15.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptpv6gk_q/libunistring5_1.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 sensible-utils all 0.0.20 [19.3 kB] Fetched 19.3 kB in 0s (1116 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm6sga1_w/sensible-utils_0.0.20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 media-types all 10.1.0 [26.9 kB] Fetched 26.9 kB in 0s (1772 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpksydswae/media-types_10.1.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Fetched 823 kB in 0s (60.3 MB/s) dpkg-name: info: moved 'automake_1%3a1.16.5-1.3_all.deb' to '/srv/rebuilderd/tmp/tmpaq8qh6z_/automake_1.16.5-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 python3.11 amd64 3.11.5-3 [582 kB] Fetched 582 kB in 0s (16.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn16lwkip/python3.11_3.11.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libtinfo6 amd64 6.4+20230625-2 [339 kB] Fetched 339 kB in 0s (7629 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7y7tu9uj/libtinfo6_6.4+20230625-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 g++-13 amd64 13.2.0-3 [10.9 MB] Fetched 10.9 MB in 0s (81.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp94yxvg59/g++-13_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libctf0 amd64 2.41-5 [87.0 kB] Fetched 87.0 kB in 0s (3753 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwpqei9o6/libctf0_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 xz-utils amd64 5.4.4-0.1 [493 kB] Fetched 493 kB in 0s (19.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgnrmfakj/xz-utils_5.4.4-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 tzdata all 2023c-10 [252 kB] Fetched 252 kB in 0s (9981 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvjhojuc2/tzdata_2023c-10_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libzstd1 amd64 1.5.5+dfsg2-1 [293 kB] Fetched 293 kB in 0s (6008 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn_w1ulhp/libzstd1_1.5.5+dfsg2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 util-linux amd64 2.39.2-1 [1224 kB] Fetched 1224 kB in 0s (32.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg0x_zay/util-linux_2.39.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 autopoint all 0.21-13 [496 kB] Fetched 496 kB in 0s (33.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx9ct9elx/autopoint_0.21-13_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2 [557 kB] Fetched 557 kB in 0s (20.5 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-2_amd64.deb' to '/srv/rebuilderd/tmp/tmp2027aji7/libgmp10_6.3.0+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 make amd64 4.3-4.1 [396 kB] Fetched 396 kB in 0s (32.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeqiouzz5/make_4.3-4.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 ncurses-bin amd64 6.4+20230625-2 [426 kB] Fetched 426 kB in 0s (19.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv9cl_uy_/ncurses-bin_6.4+20230625-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgcc-13-dev amd64 13.2.0-3 [2544 kB] Fetched 2544 kB in 0s (63.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsm56isrh/libgcc-13-dev_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 sysvinit-utils amd64 3.07-1 [31.3 kB] Fetched 31.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23sivg70/sysvinit-utils_3.07-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 python3.11-minimal amd64 3.11.5-3 [2034 kB] Fetched 2034 kB in 0s (30.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps9l7thtr/python3.11-minimal_3.11.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Fetched 40.8 kB in 0s (1484 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0_zf0dhw/libjansson4_2.14-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Fetched 72.2 kB in 0s (3754 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz_2jqjy3/libgdbm6_1.23-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libctf-nobfd0 amd64 2.41-5 [151 kB] Fetched 151 kB in 0s (3907 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu6o73ye3/libctf-nobfd0_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Fetched 39.5 kB in 0s (2037 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx_1mwoiv/libnsl2_1.3.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libcc1-0 amd64 13.2.0-3 [43.1 kB] Fetched 43.1 kB in 0s (2436 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt1lexjt1/libcc1-0_13.2.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 sed amd64 4.9-1 [329 kB] Fetched 329 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0yyav5uk/sed_4.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 dash amd64 0.5.12-6 [92.1 kB] Fetched 92.1 kB in 0s (4880 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11rytvjl/dash_0.5.12-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 diffutils amd64 1:3.8-4 [352 kB] Fetched 352 kB in 0s (11.4 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.8-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp8xv8ulke/diffutils_3.8-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 dwz amd64 0.15-1 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwoo42c3p/dwz_0.15-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libbz2-1.0 amd64 1.0.8-5+b1 [47.3 kB] Fetched 47.3 kB in 0s (1235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9rqwht4v/libbz2-1.0_1.0.8-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libsframe1 amd64 2.41-5 [75.1 kB] Fetched 75.1 kB in 0s (657 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyg9zvi2p/libsframe1_2.41-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libpcre2-8-0 amd64 10.42-4 [261 kB] Fetched 261 kB in 0s (2296 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98qwdtsd/libpcre2-8-0_10.42-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libc-bin amd64 2.37-8 [600 kB] Fetched 600 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptjgdhcab/libc-bin_2.37-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoo4p75wd/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB] Fetched 27.0 kB in 0s (1952 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.66-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpg9pat0gn/libcap2_2.66-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 dpkg-dev all 1.22.0 [1379 kB] Fetched 1379 kB in 0s (5525 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ovhf3bo/dpkg-dev_1.22.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main amd64 usrmerge all 37 [13.3 kB] Fetched 13.3 kB in 0s (729 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5e48h00k/usrmerge_37_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpu98qyz37/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY 127.0.0.1 - - [22/Jun/2025 03:08:01] code 404, message File not found 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:44915 ./ InRelease 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:44915 ./ Release [462 B] 127.0.0.1 - - [22/Jun/2025 03:08:01] code 404, message File not found 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:44915 ./ Release.gpg 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:44915 ./ Packages [208 kB] Fetched 208 kB in 0s (12.3 MB/s) Reading package lists... usr-is-merged found -- running merged-usr setup hook dpkg-deb: building package 'usr-is-merged' in '/srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY/tmp/tmp.ocl5sqqkIe/usr-is-merged.deb'. Selecting previously unselected package usr-is-merged. (Reading database ... 0 files and directories currently installed.) Preparing to unpack .../usr-is-merged.deb ... Unpacking usr-is-merged (1) ... Setting up usr-is-merged (1) ... I: skipping apt-get update because it was already run touch: cannot touch '/run/needrestart/unpacked': Permission denied I: downloading packages with apt... 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./gcc-13-base_13.2.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libc6_2.37-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libgcc-s1_13.2.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./mawk_1.3.4.20230808-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./base-files_13_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libtinfo6_6.4%2b20230625-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./debianutils_5.12_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./bash_5.2.15-2%2bb4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libcap2_2.66-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libgpg-error0_1.47-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libgcrypt20_1.10.2-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./liblz4-1_1.9.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./liblzma5_5.4.4-0.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libzstd1_1.5.5%2bdfsg2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libsystemd0_254.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./bsdutils_2.39.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libacl1_2.3.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libattr1_2.5.1-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libgmp10_6.3.0%2bdfsg-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libpcre2-8-0_10.42-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libselinux1_3.5-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./coreutils_9.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libbz2-1.0_1.0.8-5%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libmd0_1.1.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./zlib1g_1.2.13.dfsg-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./tar_1.34%2bdfsg-1.2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./dpkg_1.22.0_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./dash_0.5.12-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./diffutils_3.8-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./findutils_4.9.0-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./grep_3.11-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./gzip_1.12-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./hostname_3.23%2bnmu1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libaudit-common_3.1.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libcap-ng0_0.8.3-1%2bb3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libaudit1_3.1.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libcrypt1_4.4.36-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./debconf_1.5.82_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libpam0g_1.5.2-7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libdb5.3_5.3.28%2bdfsg2-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libpam-modules-bin_1.5.2-7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libpam-modules_1.5.2-7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libpam-runtime_1.5.2-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./login_4.13%2bdfsg1-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./ncurses-bin_6.4%2b20230625-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./perl-base_5.36.0-9_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./sed_4.9-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libblkid1_2.39.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libmount1_2.39.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libsmartcols1_2.39.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libudev1_254.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libuuid1_2.39.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./util-linux_2.39.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libdebconfclient0_0.270_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./base-passwd_3.6.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./init-system-helpers_1.65.2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./libc-bin_2.37-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./ncurses-base_6.4%2b20230625-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:01] "GET /./sysvinit-utils_3.07-1_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY 127.0.0.1 - - [22/Jun/2025 03:08:03] code 404, message File not found 127.0.0.1 - - [22/Jun/2025 03:08:03] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:44915 ./ InRelease 127.0.0.1 - - [22/Jun/2025 03:08:03] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:44915 ./ Release 127.0.0.1 - - [22/Jun/2025 03:08:03] code 404, message File not found 127.0.0.1 - - [22/Jun/2025 03:08:03] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:44915 ./ Release.gpg Reading package lists... usr-is-merged found -- running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY dummy usr-is-merged package installed -- running merged-usr essential hook Reading package lists... Building dependency tree... The following packages will be upgraded: usr-is-merged 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./usr-is-merged_37_all.deb HTTP/1.1" 200 - 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5560 B of archives. After this operation, 13.3 kB of additional disk space will be used. Get:1 http://localhost:44915 ./ usr-is-merged 37 [5560 B] Fetched 5560 B in 0s (0 B/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY/ (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 3717 files and directories currently installed.) Preparing to unpack .../usr-is-merged_37_all.deb ... Unpacking usr-is-merged (37) over (1) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY/ Setting up usr-is-merged (37) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY/ I: installing remaining packages inside the chroot... 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./perl-modules-5.36_5.36.0-9_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libgdbm6_1.23-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libgdbm-compat4_1.23-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libperl5.36_5.36.0-9_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./perl_5.36.0-9_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libssl3_3.0.10-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libpython3.11-minimal_3.11.5-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libexpat1_2.5.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./python3.11-minimal_3.11.5-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./python3-minimal_3.11.4-5%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./media-types_10.1.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./tzdata_2023c-10_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libffi8_3.4.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libncursesw6_6.4%2b20230625-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libcom-err2_1.47.0-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libkrb5support0_1.20.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libk5crypto3_1.20.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libkeyutils1_1.6.3-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libkrb5-3_1.20.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libgssapi-krb5-2_1.20.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:07] "GET /./libtirpc-common_1.3.3%2bds-1_all.deb HTTP/1.1" 200 - 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- [22/Jun/2025 03:08:08] "GET /./g%2b%2b_13.2.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./make_4.3-4.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libdpkg-perl_1.22.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./patch_2.7.6-7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./dpkg-dev_1.22.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./build-essential_12.10_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libdebhelper-perl_13.11.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libtool_2.4.7-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./dh-autoreconf_20_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libsub-override-perl_0.09-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libfile-stripnondeterminism-perl_1.13.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./dh-strip-nondeterminism_1.13.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libelf1_0.189-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./dwz_0.15-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libunistring5_1.1-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:08] "GET /./libicu72_72.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:09] "GET /./libxml2_2.9.14%2bdfsg-1.3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:09] "GET /./gettext_0.21-13%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:09] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:09] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:09] "GET /./debhelper_13.11.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:09] "GET /./libdivsufsort3_2.0.1-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:09] "GET /./libdivsufsort-dev_2.0.1-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Jun/2025 03:08:09] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpu98qyz37/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY Reading package lists... Building dependency tree... Reading state information... libblkid1 is already the newest version (2.39.2-1). base-passwd is already the newest version (3.6.1). libperl5.36 is already the newest version (5.36.0-9). libperl5.36 set to manually installed. dpkg is already the newest version (1.22.0). libattr1 is already the newest version (1:2.5.1-4). liblz4-1 is already the newest version (1.9.4-1). zlib1g is already the newest version (1:1.2.13.dfsg-3). libatomic1 is already the newest version (13.2.0-3). libatomic1 set to manually installed. libsub-override-perl is already the newest version (0.09-4). libsub-override-perl set to manually installed. libtirpc3 is already the newest version (1.3.3+ds-1). libtirpc3 set to manually installed. libgprofng0 is already the newest version (2.41-5). libgprofng0 set to manually installed. findutils is already the newest version (4.9.0-5). libpam-runtime is already the newest version (1.5.2-7). mawk is already the newest version (1.3.4.20230808-1). bsdextrautils is already the newest version (2.39.2-1). bsdextrautils set to manually installed. libc6-dev is already the newest version (2.37-8). libc6-dev set to manually installed. liblzma5 is already the newest version (5.4.4-0.1). libpython3.11-stdlib is already the newest version (3.11.5-3). libpython3.11-stdlib set to manually installed. gcc-13 is already the newest version (13.2.0-3). gcc-13 set to manually installed. m4 is already the newest version (1.4.19-4). m4 set to manually installed. libxml2 is already the newest version (2.9.14+dfsg-1.3). libxml2 set to manually installed. libstdc++-13-dev is already the newest version (13.2.0-3). libstdc++-13-dev set to manually installed. libcrypt-dev is already the newest version (1:4.4.36-2). libcrypt-dev set to manually installed. libdb5.3 is already the newest version (5.3.28+dfsg2-2). libcom-err2 is already the newest version (1.47.0-2+b1). libcom-err2 set to manually installed. libkrb5support0 is already the newest version (1.20.1-3). libkrb5support0 set to manually installed. bash is already the newest version (5.2.15-2+b4). libseccomp2 is already the newest version (2.5.4-1+b3). libseccomp2 set to manually installed. libsmartcols1 is already the newest version (2.39.2-1). python3-minimal is already the newest version (3.11.4-5+b1). python3-minimal set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libaudit1 is already the newest version (1:3.1.1-1). libtsan2 is already the newest version (13.2.0-3). libtsan2 set to manually installed. perl is already the newest version (5.36.0-9). perl set to manually installed. libexpat1 is already the newest version (2.5.0-2). libexpat1 set to manually installed. libpython3.11-minimal is already the newest version (3.11.5-3). libpython3.11-minimal set to manually installed. libisl23 is already the newest version (0.26-3). libisl23 set to manually installed. python3 is already the newest version (3.11.4-5+b1). python3 set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. libgomp1 is already the newest version (13.2.0-3). libgomp1 set to manually installed. libmpc3 is already the newest version (1.3.1-1). libmpc3 set to manually installed. libssl3 is already the newest version (3.0.10-1). libssl3 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libtext-glob-perl is already the newest version (0.11-3). libtext-glob-perl set to manually installed. hostname is already the newest version (3.23+nmu1). gettext-base is already the newest version (0.21-13+b1). gettext-base set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libgssapi-krb5-2 is already the newest version (1.20.1-3). libgssapi-krb5-2 set to manually installed. liblsan0 is already the newest version (13.2.0-3). liblsan0 set to manually installed. libgcrypt20 is already the newest version (1.10.2-2). libpipeline1 is already the newest version (1.5.7-1). libpipeline1 set to manually installed. libgcc-s1 is already the newest version (13.2.0-3). debhelper is already the newest version (13.11.6). debhelper set to manually installed. libuchardet0 is already the newest version (0.0.7-1). libuchardet0 set to manually installed. libaudit-common is already the newest version (1:3.1.1-1). libdivsufsort-dev is already the newest version (2.0.1-5). libdivsufsort-dev set to manually installed. autoconf is already the newest version (2.71-3). autoconf set to manually installed. libsystemd0 is already the newest version (254.1-3). libcrypt1 is already the newest version (1:4.4.36-2). libcap-ng0 is already the newest version (0.8.3-1+b3). man-db is already the newest version (2.11.2-3). man-db set to manually installed. libnumber-compare-perl is already the newest version (0.03-3). libnumber-compare-perl set to manually installed. libpam0g is already the newest version (1.5.2-7). groff-base is already the newest version (1.23.0-2). groff-base set to manually installed. libhwasan0 is already the newest version (13.2.0-3). libhwasan0 set to manually installed. readline-common is already the newest version (8.2-1.3). readline-common set to manually installed. libgpg-error0 is already the newest version (1.47-2). libsqlite3-0 is already the newest version (3.43.1-1). libsqlite3-0 set to manually installed. libmagic-mgc is already the newest version (1:5.45-2). libmagic-mgc set to manually installed. libtirpc-dev is already the newest version (1.3.3+ds-1). libtirpc-dev set to manually installed. gettext is already the newest version (0.21-13+b1). gettext set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.41-5). binutils-x86-64-linux-gnu set to manually installed. build-essential is already the newest version (12.10). build-essential set to manually installed. ncurses-base is already the newest version (6.4+20230625-2). libmount1 is already the newest version (2.39.2-1). bsdutils is already the newest version (1:2.39.2-1). libmpfr6 is already the newest version (4.2.1-1). libmpfr6 set to manually installed. libpam-modules-bin is already the newest version (1.5.2-7). libncursesw6 is already the newest version (6.4+20230625-2). libncursesw6 set to manually installed. libpython3-stdlib is already the newest version (3.11.4-5+b1). libpython3-stdlib set to manually installed. linux-libc-dev is already the newest version (6.4.13-1). linux-libc-dev set to manually installed. autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. base-files is already the newest version (13). libasan8 is already the newest version (13.2.0-3). libasan8 set to manually installed. libquadmath0 is already the newest version (13.2.0-3). libquadmath0 set to manually installed. libuuid1 is already the newest version (2.39.2-1). libnsl-dev is already the newest version (1.3.0-2). libnsl-dev set to manually installed. libffi8 is already the newest version (3.4.4-1). libffi8 set to manually installed. libtool is already the newest version (2.4.7-7). libtool set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. g++ is already the newest version (4:13.2.0-1). g++ set to manually installed. libdpkg-perl is already the newest version (1.22.0). libdpkg-perl set to manually installed. gcc is already the newest version (4:13.2.0-1). gcc set to manually installed. libgdbm-compat4 is already the newest version (1.23-3). libgdbm-compat4 set to manually installed. libreadline8 is already the newest version (8.2-1.3). libreadline8 set to manually installed. bzip2 is already the newest version (1.0.8-5+b1). bzip2 set to manually installed. cpp is already the newest version (4:13.2.0-1). cpp set to manually installed. libc6 is already the newest version (2.37-8). init-system-helpers is already the newest version (1.65.2). binutils-common is already the newest version (2.41-5). binutils-common set to manually installed. libfile-find-rule-perl is already the newest version (0.34-3). libfile-find-rule-perl set to manually installed. libubsan1 is already the newest version (13.2.0-3). libubsan1 set to manually installed. binutils is already the newest version (2.41-5). binutils set to manually installed. libkrb5-3 is already the newest version (1.20.1-3). libkrb5-3 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.13.1-1). libfile-stripnondeterminism-perl set to manually installed. debianutils is already the newest version (5.12). coreutils is already the newest version (9.1-1). libstdc++6 is already the newest version (13.2.0-3). libstdc++6 set to manually installed. libicu72 is already the newest version (72.1-3). libicu72 set to manually installed. libdebhelper-perl is already the newest version (13.11.6). libdebhelper-perl set to manually installed. libbinutils is already the newest version (2.41-5). libbinutils set to manually installed. libitm1 is already the newest version (13.2.0-3). libitm1 set to manually installed. libtirpc-common is already the newest version (1.3.3+ds-1). libtirpc-common set to manually installed. usr-is-merged is already the newest version (37). dh-strip-nondeterminism is already the newest version (1.13.1-1). dh-strip-nondeterminism set to manually installed. libc-dev-bin is already the newest version (2.37-8). libc-dev-bin set to manually installed. file is already the newest version (1:5.45-2). file set to manually installed. libpam-modules is already the newest version (1.5.2-7). libkeyutils1 is already the newest version (1.6.3-2). libkeyutils1 set to manually installed. libdebconfclient0 is already the newest version (0.270). libudev1 is already the newest version (254.1-3). tar is already the newest version (1.34+dfsg-1.2). libselinux1 is already the newest version (3.5-1). libacl1 is already the newest version (2.3.1-3). gcc-13-base is already the newest version (13.2.0-3). gzip is already the newest version (1.12-1). login is already the newest version (1:4.13+dfsg1-1+b1). libmagic1 is already the newest version (1:5.45-2). libmagic1 set to manually installed. libk5crypto3 is already the newest version (1.20.1-3). libk5crypto3 set to manually installed. cpp-13 is already the newest version (13.2.0-3). cpp-13 set to manually installed. debconf is already the newest version (1.5.82). grep is already the newest version (3.11-3). libmd0 is already the newest version (1.1.0-1). perl-modules-5.36 is already the newest version (5.36.0-9). perl-modules-5.36 set to manually installed. perl-base is already the newest version (5.36.0-9). libdivsufsort3 is already the newest version (2.0.1-5). libdivsufsort3 set to manually installed. libelf1 is already the newest version (0.189-4). libelf1 set to manually installed. libunistring5 is already the newest version (1.1-2). libunistring5 set to manually installed. sensible-utils is already the newest version (0.0.20). sensible-utils set to manually installed. media-types is already the newest version (10.1.0). media-types set to manually installed. automake is already the newest version (1:1.16.5-1.3). automake set to manually installed. python3.11 is already the newest version (3.11.5-3). python3.11 set to manually installed. libtinfo6 is already the newest version (6.4+20230625-2). g++-13 is already the newest version (13.2.0-3). g++-13 set to manually installed. libctf0 is already the newest version (2.41-5). libctf0 set to manually installed. xz-utils is already the newest version (5.4.4-0.1). xz-utils set to manually installed. tzdata is already the newest version (2023c-10). tzdata set to manually installed. libzstd1 is already the newest version (1.5.5+dfsg2-1). util-linux is already the newest version (2.39.2-1). autopoint is already the newest version (0.21-13). autopoint set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-2). make is already the newest version (4.3-4.1). make set to manually installed. ncurses-bin is already the newest version (6.4+20230625-2). libgcc-13-dev is already the newest version (13.2.0-3). libgcc-13-dev set to manually installed. sysvinit-utils is already the newest version (3.07-1). python3.11-minimal is already the newest version (3.11.5-3). python3.11-minimal set to manually installed. libjansson4 is already the newest version (2.14-2). libjansson4 set to manually installed. libgdbm6 is already the newest version (1.23-3). libgdbm6 set to manually installed. libctf-nobfd0 is already the newest version (2.41-5). libctf-nobfd0 set to manually installed. libnsl2 is already the newest version (1.3.0-2). libnsl2 set to manually installed. libcc1-0 is already the newest version (13.2.0-3). libcc1-0 set to manually installed. sed is already the newest version (4.9-1). dash is already the newest version (0.5.12-6). diffutils is already the newest version (1:3.8-4). dwz is already the newest version (0.15-1). dwz set to manually installed. libbz2-1.0 is already the newest version (1.0.8-5+b1). libsframe1 is already the newest version (2.41-5). libsframe1 set to manually installed. libpcre2-8-0 is already the newest version (10.42-4). libc-bin is already the newest version (2.37-8). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libcap2 is already the newest version (1:2.66-4). dpkg-dev is already the newest version (1.22.0). dpkg-dev set to manually installed. usrmerge is already the newest version (37). usrmerge set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY (Reading database ... 13246 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: PID 2871 exited with exit code 0 I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.b5yVihNpZY... I: success in 25.5103 seconds Downloading dependency 136 of 173: libdivsufsort3:amd64=2.0.1-5 Downloading dependency 137 of 173: libelf1:amd64=0.189-4 Downloading dependency 138 of 173: libunistring5:amd64=1.1-2 Downloading dependency 139 of 173: sensible-utils:amd64=0.0.20 Downloading dependency 140 of 173: media-types:amd64=10.1.0 Downloading dependency 141 of 173: automake:amd64=1:1.16.5-1.3 Downloading dependency 142 of 173: python3.11:amd64=3.11.5-3 Downloading dependency 143 of 173: libtinfo6:amd64=6.4+20230625-2 Downloading dependency 144 of 173: g++-13:amd64=13.2.0-3 Downloading dependency 145 of 173: libctf0:amd64=2.41-5 Downloading dependency 146 of 173: xz-utils:amd64=5.4.4-0.1 Downloading dependency 147 of 173: tzdata:amd64=2023c-10 Downloading dependency 148 of 173: libzstd1:amd64=1.5.5+dfsg2-1 Downloading dependency 149 of 173: util-linux:amd64=2.39.2-1 Downloading dependency 150 of 173: autopoint:amd64=0.21-13 Downloading dependency 151 of 173: libgmp10:amd64=2:6.3.0+dfsg-2 Downloading dependency 152 of 173: make:amd64=4.3-4.1 Downloading dependency 153 of 173: ncurses-bin:amd64=6.4+20230625-2 Downloading dependency 154 of 173: libgcc-13-dev:amd64=13.2.0-3 Downloading dependency 155 of 173: sysvinit-utils:amd64=3.07-1 Downloading dependency 156 of 173: python3.11-minimal:amd64=3.11.5-3 Downloading dependency 157 of 173: libjansson4:amd64=2.14-2 Downloading dependency 158 of 173: libgdbm6:amd64=1.23-3 Downloading dependency 159 of 173: libctf-nobfd0:amd64=2.41-5 Downloading dependency 160 of 173: libnsl2:amd64=1.3.0-2 Downloading dependency 161 of 173: libcc1-0:amd64=13.2.0-3 Downloading dependency 162 of 173: sed:amd64=4.9-1 Downloading dependency 163 of 173: dash:amd64=0.5.12-6 Downloading dependency 164 of 173: diffutils:amd64=1:3.8-4 Downloading dependency 165 of 173: dwz:amd64=0.15-1 Downloading dependency 166 of 173: libbz2-1.0:amd64=1.0.8-5+b1 Downloading dependency 167 of 173: libsframe1:amd64=2.41-5 Downloading dependency 168 of 173: libpcre2-8-0:amd64=10.42-4 Downloading dependency 169 of 173: libc-bin:amd64=2.37-8 Downloading dependency 170 of 173: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 171 of 173: libcap2:amd64=1:2.66-4 Downloading dependency 172 of 173: dpkg-dev:amd64=1.22.0 Downloading dependency 173 of 173: usrmerge:amd64=37 env --chdir=/srv/rebuilderd/tmp/rebuilderdKG4MaY/out DEB_BUILD_OPTIONS=parallel=4 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 SOURCE_DATE_EPOCH=1694765326 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuilduGtI8m/debrebuild.sbuildrc.plHXYYGxCkCA sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuilduGtI8m/debrebuild.tar.IQJKx78MsaAf --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=hmmer-3.4+dfsg /srv/rebuilderd/tmp/rebuilderdKG4MaY/inputs/hmmer_3.4+dfsg-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3 (07 June 2025) on osuosl4-amd64.reproducible.osuosl.org +==============================================================================+ | hmmer 3.4+dfsg-2 (amd64) Sun, 22 Jun 2025 03:08:27 +0000 | +==============================================================================+ Package: hmmer Version: 3.4+dfsg-2 Source Version: 3.4+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuilduGtI8m/debrebuild.tar.IQJKx78MsaAf to /srv/rebuilderd/tmp/tmp.sbuild.oJtEn6zbZR... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sun, 22 Jun 2025 03:08:32 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdKG4MaY/inputs/hmmer_3.4+dfsg-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdKG4MaY/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 22 Jun 2025 03:08:34 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential Filtered Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-qNSriE/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sun, 22 Jun 2025 03:08:38 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Sun, 22 Jun 2025 03:08:38 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.31-1 (2025-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.41-5 dpkg-dev_1.22.0 g++-13_13.2.0-3 gcc-13_13.2.0-3 libc6-dev_2.37-8 libstdc++-13-dev_13.2.0-3 libstdc++6_13.2.0-3 linux-libc-dev_6.4.13-1 Package versions: autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b4 binutils_2.41-5 binutils-common_2.41-5 binutils-x86-64-linux-gnu_2.41-5 bsdextrautils_2.39.2-1 bsdutils_1:2.39.2-1 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:13.2.0-1 cpp-13_13.2.0-3 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.6 debianutils_5.12 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.22.0 dpkg-dev_1.22.0 dwz_0.15-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1 g++-13_13.2.0-3 gcc_4:13.2.0-1 gcc-13_13.2.0-3 gcc-13-base_13.2.0-3 gettext_0.21-13+b1 gettext-base_0.21-13+b1 grep_3.11-3 groff-base_1.23.0-2 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libarchive-zip-perl_1.68-1 libasan8_13.2.0-3 libatomic1_13.2.0-3 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-5 libblkid1_2.39.2-1 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-8 libc-dev-bin_2.37-8 libc6_2.37-8 libc6-dev_2.37-8 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_13.2.0-3 libcom-err2_1.47.0-2+b1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-5 libctf0_2.41-5 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdivsufsort-dev_2.0.1-5 libdivsufsort3_2.0.1-5 libdpkg-perl_1.22.0 libelf1_0.189-4 libexpat1_2.5.0-2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-3 libgcc-s1_13.2.0-3 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgomp1_13.2.0-3 libgpg-error0_1.47-2 libgprofng0_2.41-5 libgssapi-krb5-2_1.20.1-3 libhwasan0_13.2.0-3 libicu72_72.1-3 libisl23_0.26-3 libitm1_13.2.0-3 libjansson4_2.14-2 libk5crypto3_1.20.1-3 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-3 libkrb5support0_1.20.1-3 liblsan0_13.2.0-3 liblz4-1_1.9.4-1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20230625-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpython3-stdlib_3.11.4-5+b1 libpython3.11-minimal_3.11.5-3 libpython3.11-stdlib_3.11.5-3 libquadmath0_13.2.0-3 libreadline8_8.2-1.3 libseccomp2_2.5.4-1+b3 libselinux1_3.5-1 libsframe1_2.41-5 libsmartcols1_2.39.2-1 libsqlite3-0_3.43.1-1 libssl3_3.0.10-1 libstdc++-13-dev_13.2.0-3 libstdc++6_13.2.0-3 libsub-override-perl_0.09-4 libsystemd0_254.1-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-3 libubsan1_13.2.0-3 libuchardet0_0.0.7-1 libudev1_254.1-3 libunistring5_1.1-2 libuuid1_2.39.2-1 libxml2_2.9.14+dfsg-1.3 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.4.13-1 login_1:4.13+dfsg1-1+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 media-types_10.1.0 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 po-debconf_1.0.21+nmu1 python3_3.11.4-5+b1 python3-minimal_3.11.4-5+b1 python3.11_3.11.5-3 python3.11-minimal_3.11.5-3 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 usr-is-merged_37 usrmerge_37 util-linux_2.39.2-1 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 +------------------------------------------------------------------------------+ | Build Sun, 22 Jun 2025 03:08:38 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hmmer Binary: hmmer, hmmer-doc, hmmer-examples Architecture: any all Version: 3.4+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://hmmer.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/hmmer Vcs-Git: https://salsa.debian.org/med-team/hmmer.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3 Package-List: hmmer deb science optional arch=any-amd64,any-i386,arm64,powerpc,ppc64,x32 hmmer-doc deb doc optional arch=all hmmer-examples deb doc optional arch=any Checksums-Sha1: 69590adb499ca8e4eea9d2ed10fb66ae42e82ea8 13297988 hmmer_3.4+dfsg.orig.tar.xz 0fdc1387c061446ae90aa1bad78311b91d9613be 12792 hmmer_3.4+dfsg-2.debian.tar.xz Checksums-Sha256: 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 13297988 hmmer_3.4+dfsg.orig.tar.xz 5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 12792 hmmer_3.4+dfsg-2.debian.tar.xz Files: ac66418b48c613d96d43770f971a22d3 13297988 hmmer_3.4+dfsg.orig.tar.xz 052bc782e23681c65ad490638bc541c4 12792 hmmer_3.4+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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info: unpacking hmmer_3.4+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer_3.4+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_extension.patch dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying verbose-easel dpkg-source: info: applying skip_threads_check dpkg-source: info: applying sub_make_parallel dpkg-source: info: applying spelling Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/reproducible-path/resolver-qNSriE/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sun, 22 Jun 2025 03:08:44 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/hmmer-3.4+dfsg/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/hmmer-3.4+dfsg/debian/control" ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/hmmer-3.4+dfsg/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/hmmer-3.4+dfsg/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1694765326 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.4+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? rm -f config.log config.status configure find . -name Makefile -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' AUTOHEADER=true dh_autoreconf make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" dh_auto_configure -- --enable-threads --enable-sse ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-sse configure: Configuring HMMER3 for your system. checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our SSE code... yes configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for netinet/in.h... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_sse to src/impl HMMER configuration: compiler: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread host: x86_64-pc-linux-gnu linker: -Wl,-z,relro -Wl,-z,now -flto libraries: -lpthread DP implementation: sse Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' export V=VERBOSE ; dh_auto_build make -j4 make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c easel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_alloc.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_alphabet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_arr2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_arr3.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_bitfield.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_buffer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_cluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_composition.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_cpu.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_dirichlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_distance.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_dmatrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_dsqdata.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_exponential.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_fileparser.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_gamma.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_gencode.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_getopts.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_gev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_graph.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_gumbel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_heap.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_histogram.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_hmm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_huffman.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_hyperexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_iset.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_json.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_keyhash.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_lognormal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_matrixops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_mem.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_minimizer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_mixdchlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_mixgev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_mpi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msacluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile_a2m.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile_afa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile_clustal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile_phylip.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile_psiblast.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile_selex.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msafile_stockholm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msashuffle.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_msaweight.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_normal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_paml.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_quicksort.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_random.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_rand64.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_randomseq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_ratematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_recorder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_red_black.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_regexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_rootfinder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_scorematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_sq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_sqio.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_sqio_ascii.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_sqio_ncbi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_ssi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_stack.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_stats.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_stopwatch.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_stretchexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_subcmd.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_threads.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_tree.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_varint.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_vectorops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_weibull.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_workqueue.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_wuss.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_sse.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_avx.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_avx512.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_neon.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_iset.o esl_json.o esl_keyhash.o esl_lognormal.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -c cmd_filter.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domain.o -c p7_domain.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hit.o -c p7_hit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_ssv.o -c fm_ssv.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o io.o -c io.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 10 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C profmark all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' export V=VERBOSE ; make check -j24 | tee debian/test_log make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel tests make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alloc_utest -I. -I. -L. -DeslALLOC_TESTDRIVE ./esl_alloc.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_bitfield_utest -I. -I. -L. -DeslBITFIELD_TESTDRIVE ./esl_bitfield.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cpu_utest -I. -I. -L. -DeslCPU_TESTDRIVE ./esl_cpu.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_graph_utest -I. -I. -L. -DeslGRAPH_TESTDRIVE ./esl_graph.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_huffman_utest -I. -I. -L. -DeslHUFFMAN_TESTDRIVE ./esl_huffman.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_iset_utest -I. -I. -L. -DeslISET_TESTDRIVE ./esl_iset.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_json_utest -I. -I. -L. -DeslJSON_TESTDRIVE ./esl_json.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_lognormal_utest -I. -I. -L. -DeslLOGNORMAL_TESTDRIVE ./esl_lognormal.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_matrixops_utest -I. -I. -L. -DeslMATRIXOPS_TESTDRIVE ./esl_matrixops.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_minimizer_utest -I. -I. -L. -DeslMINIMIZER_TESTDRIVE ./esl_minimizer.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mixdchlet_utest -I. -I. -L. -DeslMIXDCHLET_TESTDRIVE ./esl_mixdchlet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_quicksort_utest -I. -I. -L. -DeslQUICKSORT_TESTDRIVE ./esl_quicksort.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rand64_utest -I. -I. -L. -DeslRAND64_TESTDRIVE ./esl_rand64.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_red_black_utest -I. -I. -L. -DeslRED_BLACK_TESTDRIVE ./esl_red_black.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_varint_utest -I. -I. -L. -DeslVARINT_TESTDRIVE ./esl_varint.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx_utest -I. -I. -L. -DeslAVX_TESTDRIVE ./esl_avx.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx512_utest -I. -I. -L. -DeslAVX512_TESTDRIVE ./esl_avx512.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_neon_utest -I. -I. -L. -DeslNEON_TESTDRIVE ./esl_neon.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vmx_utest -I. -I. -L. -DeslVMX_TESTDRIVE ./esl_vmx.c -leasel -lm -lpthread make -C miniapps tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src tests make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7DOMAIN_TESTDRIVE -o p7_domain_utest ./p7_domain.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HIT_TESTDRIVE -o p7_hit_utest ./p7_hit.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATS_TESTDRIVE -o p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATUS_TESTDRIVE -o hmmd_search_status_utest ./hmmd_search_status.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lpthread -lm make -C impl_sse tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C easel check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make -C miniapps check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make -C testsuite check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ iset-utest] ... ok. exercise 26 [ json-utest] ... ok. exercise 27 [ keyhash-utest] ... ok. exercise 28 [ lognormal-utest] ... ok. exercise 29 [ matrixops-utest] ... ok. exercise 30 [ mem-utest] ... ok. exercise 31 [ minimizer-utest] ... ok. exercise 32 [ mixdchlet-utest] ... ok. exercise 33 [ msa-utest] ... ok. exercise 34 [ msacluster-utest] ... ok. exercise 35 [ msafile] ... ok. exercise 36 [ msafile2] ... ok. exercise 37 [ msafile-a2m] ... ok. exercise 38 [ msafile-afa] ... ok. exercise 39 [ msafile-clustal] ... ok. exercise 40 [ msafile-phylip] ... ok. exercise 41 [ msafile-psiblast] ... ok. exercise 42 [ msafile-selex] ... ok. exercise 43 [ msafile-stockholm] ... ok. exercise 44 [ msaweight-utest] ... ok. exercise 45 [ neon-utest] ... ok. exercise 46 [ normal-utest] ... ok. exercise 47 [ quicksort-utest] ... ok. exercise 48 [ random-utest] ... ok. exercise 49 [ rand64-utest] ... ok. exercise 50 [ randomseq-utest] ... ok. exercise 51 [ ratematrix-utest] ... ok. exercise 52 [ recorder-utest] ... ok. exercise 53 [ red_black-utest] ... ok. exercise 54 [ regexp-utest] ... ok. exercise 55 [ rootfinder-utest] ... ok. exercise 56 [ scorematrix-utest] ... ok. exercise 57 [ sq-utest] ... ok. exercise 58 [ sqio-utest] ... ok. exercise 59 [ sse-utest] ... ok. exercise 60 [ ssi-utest] ... ok. exercise 61 [ stack-utest] ... ok. exercise 62 [ stats-utest] ... ok. exercise 63 [ stretchexp-utest] ... ok. exercise 64 [ tree-utest] ... ok. exercise 65 [ varint-utest] ... ok. exercise 66 [ vectorops-utest] ... ok. exercise 67 [ vmx-utest] ... ok. exercise 68 [ weibull-utest] ... ok. exercise 69 [ wuss-utest] ... ok. exercise 70 [ e2] ... ok. exercise 71 [ degen-residues] ... ok. exercise 72 [ ncbi-indices] ... ok. exercise 73 [ blank-gf] ... ok. exercise 74 [ sindi] ... ok. exercise 75 [ esl-translate] ... ok. exercise 76 [ esl-afetch] ... ok. exercise 77 [ esl-alimanip] ... ok. exercise 78 [ esl-alimap] ... ok. exercise 79 [ esl-alimask] ... ok. exercise 80 [ esl-alimerge] ... ok. exercise 81 [ esl-alistat] ... ok. exercise 82 [ esl-compalign] ... ok. exercise 83 [ esl-construct] ... ok. exercise 84 [ esl-mask] ... ok. exercise 85 [ esl-seqrange] ... ok. exercise 86 [ esl-shuffle] ... ok. exercise 87 [ esl-ssdraw] ... ok. All 87 exercises at level <= 2 passed. System information: Sun Jun 22 03:21:44 UTC 2025 Linux sbuild 6.12.31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.31-1 (2025-06-09) x86_64 GNU/Linux make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C testsuite check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Sun Jun 22 03:22:07 UTC 2025 Linux sbuild 6.12.31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.31-1 (2025-06-09) x86_64 GNU/Linux make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/testsuite' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_install make -j4 install DESTDIR=/build/reproducible-path/hmmer-3.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' SUBDIR easel make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. SUBDIR miniapps make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' SUBDIR src make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. SUBDIR impl_sse make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' SUBDIR profmark make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin; fi if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1 ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1; fi make -C src install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin/ ;\ done make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C documentation install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make -C man install make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/x86_64-linux-gnu/hmmer/ cp src/hmmc2 /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/x86_64-linux-gnu/hmmer/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_installexamples mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \; find src/impl_sse -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \; cp src/itest_brute /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp src/hmmpress.itest.pl /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp -aR testsuite /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find easel -name "*.o" -delete cp -aR easel /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples cp -aR tutorial /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/build/reproducible-path/hmmer-3.4+dfsg^.^g" find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_compress -Xtutorial/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_fixperms find debian -name .dropbox.attr -delete find debian -name "*.fa" -executable -exec chmod -x \{\} \; find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hmmer-dbgsym' in '../hmmer-dbgsym_3.4+dfsg-2_amd64.deb'. dpkg-deb: building package 'hmmer' in '../hmmer_3.4+dfsg-2_amd64.deb'. dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.4+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=any -O../hmmer_3.4+dfsg-2_amd64.buildinfo dpkg-genchanges --build=any -O../hmmer_3.4+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-06-22T03:23:09Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 22 Jun 2025 03:23:11 +0000 | +------------------------------------------------------------------------------+ hmmer_3.4+dfsg-2_amd64.changes: ------------------------------- Format: 1.8 Date: Fri, 15 Sep 2023 10:08:46 +0200 Source: hmmer Binary: hmmer hmmer-dbgsym hmmer-examples Architecture: amd64 Version: 3.4+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-examples - profile hidden Markov models for protein sequence analysis (examp Changes: hmmer (3.4+dfsg-2) unstable; urgency=medium . * Team upload. * d/control: hmmer-examples contains arch-specific test programs, mark as "Architecture: any". Checksums-Sha1: 06ac89a376afc2173449a825cae9ad53bfe9fe31 12574348 hmmer-dbgsym_3.4+dfsg-2_amd64.deb 924ed6fd5a8ce8c7e29f7a69235fb6b443af073a 32467948 hmmer-examples_3.4+dfsg-2_amd64.deb 9d096418183e725fd417562dfea4dc531677c1cc 5866 hmmer_3.4+dfsg-2_amd64.buildinfo c2e3d67e026e3f6a777c59c0cdaeecbc11b86e77 1062388 hmmer_3.4+dfsg-2_amd64.deb Checksums-Sha256: 0818b1a3de6dd69f7e57d4d76887e2e73fe8f315798dd1e7d98934a2714cf216 12574348 hmmer-dbgsym_3.4+dfsg-2_amd64.deb a4678766646229e3767b67f73beadd293bf723410d53b5ad4976f277c9c19dc1 32467948 hmmer-examples_3.4+dfsg-2_amd64.deb 25b4834f8917f9358147ca09a78c0f23f7fc12f04b1d37c62d44fa0c06c63db6 5866 hmmer_3.4+dfsg-2_amd64.buildinfo a06b8441605ad4baaf34eacf6bb94152d37afc0edc4d30006e8743970b7c6be5 1062388 hmmer_3.4+dfsg-2_amd64.deb Files: e4af32a659cdb52eb059bf234ef0029e 12574348 debug optional hmmer-dbgsym_3.4+dfsg-2_amd64.deb a52e84214be91abd739a0027c5827169 32467948 doc optional hmmer-examples_3.4+dfsg-2_amd64.deb 473a9058f131029375759cbc03e5cd34 5866 science optional hmmer_3.4+dfsg-2_amd64.buildinfo 954c9e0c3fe9961e891453bc24f822d7 1062388 science optional hmmer_3.4+dfsg-2_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 22 Jun 2025 03:23:12 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer Binary: hmmer hmmer-dbgsym hmmer-examples Architecture: amd64 Version: 3.4+dfsg-2 Checksums-Md5: e4af32a659cdb52eb059bf234ef0029e 12574348 hmmer-dbgsym_3.4+dfsg-2_amd64.deb a52e84214be91abd739a0027c5827169 32467948 hmmer-examples_3.4+dfsg-2_amd64.deb 954c9e0c3fe9961e891453bc24f822d7 1062388 hmmer_3.4+dfsg-2_amd64.deb Checksums-Sha1: 06ac89a376afc2173449a825cae9ad53bfe9fe31 12574348 hmmer-dbgsym_3.4+dfsg-2_amd64.deb 924ed6fd5a8ce8c7e29f7a69235fb6b443af073a 32467948 hmmer-examples_3.4+dfsg-2_amd64.deb c2e3d67e026e3f6a777c59c0cdaeecbc11b86e77 1062388 hmmer_3.4+dfsg-2_amd64.deb Checksums-Sha256: 0818b1a3de6dd69f7e57d4d76887e2e73fe8f315798dd1e7d98934a2714cf216 12574348 hmmer-dbgsym_3.4+dfsg-2_amd64.deb a4678766646229e3767b67f73beadd293bf723410d53b5ad4976f277c9c19dc1 32467948 hmmer-examples_3.4+dfsg-2_amd64.deb a06b8441605ad4baaf34eacf6bb94152d37afc0edc4d30006e8743970b7c6be5 1062388 hmmer_3.4+dfsg-2_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 22 Jun 2025 03:23:07 +0000 Build-Path: /build/reproducible-path/hmmer-3.4+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.1), bash (= 5.2.15-2+b4), binutils (= 2.41-5), binutils-common (= 2.41-5), binutils-x86-64-linux-gnu (= 2.41-5), bsdextrautils (= 2.39.2-1), bsdutils (= 1:2.39.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:13.2.0-1), cpp-13 (= 13.2.0-3), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.6), debianutils (= 5.12), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.22.0), dpkg-dev (= 1.22.0), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1), g++-13 (= 13.2.0-3), gcc (= 4:13.2.0-1), gcc-13 (= 13.2.0-3), gcc-13-base (= 13.2.0-3), gettext (= 0.21-13+b1), gettext-base (= 0.21-13+b1), grep (= 3.11-3), groff-base (= 1.23.0-2), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-3), libatomic1 (= 13.2.0-3), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-5), libblkid1 (= 2.39.2-1), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.37-8), libc-dev-bin (= 2.37-8), libc6 (= 2.37-8), libc6-dev (= 2.37-8), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.2.0-3), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-5), libctf0 (= 2.41-5), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.6), libdivsufsort-dev (= 2.0.1-5), libdivsufsort3 (= 2.0.1-5), libdpkg-perl (= 1.22.0), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-3), libgcc-s1 (= 13.2.0-3), libgcrypt20 (= 1.10.2-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-3), libgpg-error0 (= 1.47-2), libgprofng0 (= 2.41-5), libgssapi-krb5-2 (= 1.20.1-3), libhwasan0 (= 13.2.0-3), libicu72 (= 72.1-3), libisl23 (= 0.26-3), libitm1 (= 13.2.0-3), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-3), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3), libkrb5support0 (= 1.20.1-3), liblsan0 (= 13.2.0-3), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.4-0.1), libmagic-mgc (= 1:5.45-2), 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DEB_BUILD_OPTIONS="parallel=4" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1694765326" +------------------------------------------------------------------------------+ | Package contents Sun, 22 Jun 2025 03:23:12 +0000 | +------------------------------------------------------------------------------+ hmmer-dbgsym_3.4+dfsg-2_amd64.deb --------------------------------- new Debian package, version 2.0. size 12574348 bytes: control archive=1512 bytes. 1149 bytes, 12 lines control 2202 bytes, 21 lines md5sums Package: hmmer-dbgsym Source: hmmer Version: 3.4+dfsg-2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 12831 Depends: hmmer (= 3.4+dfsg-2) Section: debug Priority: optional Description: debug symbols for hmmer Build-Ids: 079b26faebed39d4958c167733d226bb8c5e23c5 1ac22dde1b072d47f9c2d7f5727c46391110a5d9 22a2a42dceac082f68f7a26bf918d0ad4dfd5da7 4df05def310a01a78737fb923f301f8552a94f50 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2023-09-15 08:08 ./usr/lib/debug/.dwz/x86_64-linux-gnu/hmmer.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer-dbgsym -> hmmer hmmer-examples_3.4+dfsg-2_amd64.deb ----------------------------------- new Debian package, version 2.0. size 32467948 bytes: control archive=18332 bytes. 864 bytes, 22 lines control 68891 bytes, 749 lines md5sums Package: hmmer-examples Source: hmmer Version: 3.4+dfsg-2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 33403 Depends: libperl4-corelibs-perl Section: doc Priority: optional Multi-Arch: foreign Homepage: http://hmmer.org/ Description: profile hidden Markov models for protein sequence analysis (examples) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . 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md5sums Package: hmmer Version: 3.4+dfsg-2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 6466 Depends: libc6 (>= 2.34), libdivsufsort3 (>= 2.0.1) Suggests: hmmer-doc (>= 3.4+dfsg-2) Section: science Priority: optional Homepage: http://hmmer.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . 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+------------------------------------------------------------------------------+ | Post Build Sun, 22 Jun 2025 03:23:18 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 22 Jun 2025 03:23:18 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 22 Jun 2025 03:23:21 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 290696 Build-Time: 865 Distribution: unstable Host Architecture: amd64 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdKG4MaY/inputs/hmmer_3.4+dfsg-2.dsc Machine Architecture: amd64 Package: hmmer Package-Time: 882 Source-Version: 3.4+dfsg-2 Space: 290696 Status: successful Version: 3.4+dfsg-2 -------------------------------------------------------------------------------- Finished at 2025-06-22T03:23:09Z Build needed 00:14:42, 290696k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdKG4MaY/out checking hmmer-dbgsym_3.4+dfsg-2_amd64.deb: size... md5... sha1... sha256... all OK checking hmmer-examples_3.4+dfsg-2_amd64.deb: size differs for hmmer-examples_3.4+dfsg-2_amd64.deb