=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdY8O0VF/inputs/hyphy_2.5.69+dfsg-1_amd64.buildinfo Source: hyphy Version: 2.5.69+dfsg-1 rebuilderd-worker node: osuosl4-amd64 +------------------------------------------------------------------------------+ | Downloading sources Mon, 23 Jun 2025 09:34:25 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [166 kB] Get:2 https://deb.debian.org/debian sid InRelease [208 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 3s (7,276 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/h/hyphy/hyphy_2.5.69%2bdfsg-1.dsc' hyphy_2.5.69+dfsg-1.dsc 2421 SHA256:1fd3b7bd487683ae1aa1e77d062f80b5c1a69da1ad81a29facab65d6623b828f 'https://deb.debian.org/debian/pool/main/h/hyphy/hyphy_2.5.69%2bdfsg.orig.tar.xz' hyphy_2.5.69+dfsg.orig.tar.xz 2633436 SHA256:34ef5370a72a08a221cf28a88f7bed1615b42594baf00a1813c7d15b63aa6e44 'https://deb.debian.org/debian/pool/main/h/hyphy/hyphy_2.5.69%2bdfsg-1.debian.tar.xz' hyphy_2.5.69+dfsg-1.debian.tar.xz 17452 SHA256:3b879a7e775266fab981d57100407cad3ae6d346f66d3b69be56b385488ea2ba 34ef5370a72a08a221cf28a88f7bed1615b42594baf00a1813c7d15b63aa6e44 hyphy_2.5.69+dfsg.orig.tar.xz 3b879a7e775266fab981d57100407cad3ae6d346f66d3b69be56b385488ea2ba hyphy_2.5.69+dfsg-1.debian.tar.xz 1fd3b7bd487683ae1aa1e77d062f80b5c1a69da1ad81a29facab65d6623b828f hyphy_2.5.69+dfsg-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Mon, 23 Jun 2025 09:34:30 +0000 | +------------------------------------------------------------------------------+ Rebuilding hyphy=2.5.69+dfsg-1 in /srv/rebuilderd/tmp/rebuilderdY8O0VF/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdY8O0VF/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdY8O0VF/inputs/hyphy_2.5.69+dfsg-1_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdY8O0VF/inputs/hyphy_2.5.69+dfsg-1_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/hyphy-2.5.69+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid InRelease [205 kB] Get:2 http://snapshot.debian.org/archive/debian/20250305T084405Z sid InRelease [205 kB] Get:3 http://snapshot.debian.org/archive/debian/20250622T153059Z sid InRelease [208 kB] Get:4 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 Packages [10.1 MB] Get:5 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 Packages [10.1 MB] Get:6 http://snapshot.debian.org/archive/debian/20250622T153059Z sid/main amd64 Packages [10.1 MB] Fetched 30.9 MB in 4s (7462 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250303T214758Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20250305T084405Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20250622T153059Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Fetched 507 kB in 0s (38.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprb88b3wh/python3.13-dev_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 openssh-client amd64 1:9.9p2-1 [970 kB] Fetched 970 kB in 0s (24.5 MB/s) dpkg-name: info: moved 'openssh-client_1%3a9.9p2-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpvx3js780/openssh-client_9.9p2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Fetched 37.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpai6ovz_y/libbz2-1.0_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn5yomsm_/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Fetched 9092 B in 0s (844 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm92j9j9o/libkeyutils1_1.6.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp20ljaxwp/hostname_3.25_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Fetched 15.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpedoxtb_f/libkrb5-dev_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libibverbs-dev amd64 56.0-2 [655 kB] Fetched 655 kB in 0s (8359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4nf7fz2s/libibverbs-dev_56.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Fetched 158 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwtf43pqf/libexpat1-dev_2.6.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 ncurses-base all 6.5+20250216-1 [273 kB] Fetched 273 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7w6jonm_/ncurses-base_6.5+20250216-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Fetched 365 kB in 0s (30.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5lkhmpnb/libzstd-dev_1.5.6+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcc1-0 amd64 14.2.0-17 [42.8 kB] Fetched 42.8 kB in 0s (4021 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppba52gqq/libcc1-0_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Fetched 19.7 kB in 0s (504 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjpxg60v4/libmunge2_0.5.16-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libperl5.40 amd64 5.40.1-2 [4315 kB] Fetched 4315 kB in 0s (117 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1bgehm14/libperl5.40_5.40.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (3128 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8efe4tu/libacl1_2.3.2-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libc6-dev amd64 2.41-3 [1989 kB] Fetched 1989 kB in 0s (91.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdjq6ns64/libc6-dev_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgcc-s1 amd64 14.2.0-17 [72.7 kB] Fetched 72.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprj5wdj5e/libgcc-s1_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 libpython3-all-dev amd64 3.13.2-2 [1068 B] Fetched 1068 B in 0s (53.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp94_9a83x/libpython3-all-dev_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Fetched 60.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6dtwzq1/libgssrpc4t64_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libaudit1 amd64 1:4.0.2-2+b2 [55.1 kB] Fetched 55.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpe8mugtsp/libaudit1_4.0.2-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 openssl-provider-legacy amd64 3.4.1-1 [302 kB] Fetched 302 kB in 0s (28.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95yf8jug/openssl-provider-legacy_3.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Fetched 455 kB in 0s (39.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2dp5qrb3/libgnutls-openssl27t64_3.8.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libhwloc-dev amd64 2.12.0-1 [255 kB] Fetched 255 kB in 0s (3072 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqw8snixp/libhwloc-dev_2.12.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Fetched 90.9 kB in 0s (8912 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0xqevqi/libdebhelper-perl_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Fetched 28.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm07cvxe_/python3_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 cpp-14 amd64 14.2.0-17 [1280 B] Fetched 1280 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt9h1pao9/cpp-14_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250622T153059Z sid/main amd64 libltdl7 amd64 2.5.4-4 [416 kB] Fetched 416 kB in 0s (32.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3n3zlbkl/libltdl7_2.5.4-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Fetched 19.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4zx6pl2/libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Fetched 90.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpy6qvo9eb/libcrypt1_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Fetched 8560 kB in 0s (128 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgoic6qtz/libz3-4_4.13.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Fetched 1464 kB in 0s (86.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvzivevz0/libgnutls30t64_3.8.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libc6 amd64 2.41-3 [2841 kB] Fetched 2841 kB in 0s (113 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1uied_ro/libc6_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Fetched 99.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4nw6a0eq/libtasn1-6-dev_4.20.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Fetched 68.9 kB in 0s (6871 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxyr5ohfj/libuchardet0_0.0.8-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt2ixzzsp/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libllvm17t64 amd64 1:17.0.6-21 [23.6 MB] Fetched 23.6 MB in 0s (62.1 MB/s) dpkg-name: info: moved 'libllvm17t64_1%3a17.0.6-21_amd64.deb' to '/srv/rebuilderd/tmp/tmpf_3z_7i2/libllvm17t64_17.0.6-21_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 login.defs all 1:4.17.3-1 [186 kB] Fetched 186 kB in 0s (0 B/s) dpkg-name: info: moved 'login.defs_1%3a4.17.3-1_all.deb' to '/srv/rebuilderd/tmp/tmp2ezhz01s/login.defs_4.17.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Fetched 1436 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpbtptxfnd/gcc-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa82nsmic/gzip_1.13-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcap2 amd64 1:2.73-4 [27.3 kB] Fetched 27.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.73-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp1dqm9z1i/libcap2_2.73-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Fetched 329 kB in 0s (30.4 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp2a4h5m0j/libgmpxx4ldbl_6.3.0+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libzstd1 amd64 1.5.6+dfsg-2 [300 kB] Fetched 300 kB in 0s (28.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp111f5mm7/libzstd1_1.5.6+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_9tj3qvc/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Fetched 307 kB in 0s (29.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqg_rfd2q/libldap-dev_2.6.9+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Fetched 154 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdio2q7bx/libuv1t64_1.50.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libfuse3-3 amd64 3.14.0-10 [89.7 kB] Fetched 89.7 kB in 0s (4513 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57gx2pqp/libfuse3-3_3.14.0-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Fetched 81.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvuubb9yb/libjsoncpp26_1.9.6-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (54.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe54_sv2/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Fetched 4840 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppa0rnm95/cpp-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 python3-all amd64 3.13.2-2 [1044 B] Fetched 1044 B in 0s (64.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa5sb_58j/python3-all_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Fetched 22.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjyzru71r/libnuma1_2.0.18-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.11.0-1 [34.0 kB] Fetched 34.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpom4_ec8t/libngtcp2-crypto-gnutls-dev_1.11.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libdrm-amdgpu1 amd64 2.4.124-1 [22.4 kB] Fetched 22.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvbn9rznk/libdrm-amdgpu1_2.4.124-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libdpkg-perl all 1.22.15 [648 kB] Fetched 648 kB in 0s (51.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwbfac1oa/libdpkg-perl_1.22.15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Fetched 560 kB in 0s (40.0 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpogsi1z_f/libgmp10_6.3.0+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpihqfs12d/libmagic1t64_5.45-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Fetched 138 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpctt_b1m5/libgssapi-krb5-2_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi7po9gvx/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 perl-modules-5.40 all 5.40.1-2 [3017 kB] Fetched 3017 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqmizy_c4/perl-modules-5.40_5.40.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 python3-all-dev amd64 3.13.2-2 [1064 B] Fetched 1064 B in 0s (85.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc7z2jho0/python3-all-dev_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libitm1 amd64 14.2.0-17 [25.9 kB] Fetched 25.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnw1k8mup/libitm1_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsystemd0 amd64 257.3-1 [450 kB] Fetched 450 kB in 0s (39.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4j7ohf84/libsystemd0_257.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 grep amd64 3.11-4 [431 kB] Fetched 431 kB in 0s (39.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxnutbi3m/grep_3.11-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Fetched 75.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqbbzl3yu/libnghttp2-14_1.64.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Fetched 40.2 kB in 0s (2318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqvqvk0_l/ocl-icd-libopencl1_2.3.2-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Fetched 59.4 kB in 0s (1146 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7aj67pg/libnl-3-200_3.7.0-0.3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 920 kB in 0s (63.0 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpb34o2mvv/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17 [12.1 MB] Fetched 12.1 MB in 0s (146 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpymrilma8/g++-14-x86-64-linux-gnu_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (30.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeohtt1w3/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6vbuz5g3/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 cmake-data all 3.31.6-1 [2268 kB] Fetched 2268 kB in 0s (91.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzl23b53f/cmake-data_3.31.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Fetched 2787 kB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1u9r249d/libssl-dev_3.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Fetched 50.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmp3qe5v4m4/libxext6_1.3.4-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Fetched 2151 kB in 0s (100 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6yquz840/libpython3.13_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Fetched 36.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmy2qi8q8/libmd0_1.1.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsframe1 amd64 2.44-2 [78.2 kB] Fetched 78.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqudmlx1m/libsframe1_2.44-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Fetched 55.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp44jxk8gj/comerr-dev_2.1-1.47.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Fetched 598 kB in 0s (50.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6_rfv90f/libunbound8_1.22.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libatomic1 amd64 14.2.0-17 [9316 B] Fetched 9316 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp20jk7_bw/libatomic1_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Fetched 13.0 MB in 0s (148 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr4ff1zyn/libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprhz5v4ep/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libopenmpi40 amd64 5.0.7-1 [2365 kB] Fetched 2365 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6lqf5nfx/libopenmpi40_5.0.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Fetched 631 kB in 0s (3465 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplkmlppkl/libfabric1_1.17.0-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Fetched 30.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplgt2996d/pkgconf-bin_1.8.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkawbyy8h/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (0 B/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpn270__ys/g++-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 sysvinit-utils amd64 3.14-3 [34.0 kB] Fetched 34.0 kB in 0s (1946 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxo28twgg/sysvinit-utils_3.14-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libhwloc-plugins amd64 2.12.0-1 [18.1 kB] Fetched 18.1 kB in 0s (175 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_ptr2zn/libhwloc-plugins_2.12.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Fetched 192 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprt1n3wzk/libldap2_2.6.9+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Fetched 425 kB in 0s (38.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5mfb77o/libp11-kit0_0.25.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (30.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpthajh0wu/sed_4.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_s2fuq9x/dwz_0.15-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Fetched 27.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmjx6sj6t/python3-minimal_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 binutils amd64 2.44-2 [265 kB] Fetched 265 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg0hu1ca/binutils_2.44-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 coreutils amd64 9.5-1+b1 [2922 kB] Fetched 2922 kB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprud93yan/coreutils_9.5-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Fetched 57.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbpveh92/libsasl2-2_2.1.28+dfsg1-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsqlite3-dev amd64 3.46.1-1 [1107 kB] Fetched 1107 kB in 0s (72.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11_u4hkq/libsqlite3-dev_3.46.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 base-passwd amd64 3.6.6 [53.1 kB] Fetched 53.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpok4lrx5q/base-passwd_3.6.6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Fetched 14.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppqk9onqr/libxnvctrl0_535.171.04-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libubsan1 amd64 14.2.0-17 [1075 kB] Fetched 1075 kB in 0s (66.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprigum70g/libubsan1_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gcc-14-base amd64 14.2.0-17 [49.1 kB] Fetched 49.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu_y392ap/gcc-14-base_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Fetched 170 kB in 0s (6466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw5gsqrm8/libpsm-infinipath1_3.3+20.604758e7-6.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 m4 amd64 1.4.19-5 [294 kB] Fetched 294 kB in 0s (26.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp30l5ei2e/m4_1.4.19-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Fetched 64.9 kB in 0s (5749 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-7_amd64.deb' to '/srv/rebuilderd/tmp/tmp3yooob3o/libproc2-0_4.0.4-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Fetched 1185 kB in 0s (73.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpedrwvf96/groff-base_1.23.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvjf7qrcz/build-essential_12.12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Fetched 23.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxrfx_phq/libffi8_3.4.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libudev1 amd64 257.3-1 [149 kB] Fetched 149 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjrc3b630/libudev1_257.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libdrm-common all 2.4.124-1 [8180 B] Fetched 8180 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy3_5ojmo/libdrm-common_2.4.124-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libdrm2 amd64 2.4.124-1 [38.9 kB] Fetched 38.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjtsw80g3/libdrm2_2.4.124-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Fetched 349 kB in 0s (34.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt69sd2fv/libarchive13t64_3.7.4-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Fetched 326 kB in 0s (32.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpugvw_47o/libkrb5-3_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 libpmix2t64 amd64 5.0.6-4 [652 kB] Fetched 652 kB in 0s (9634 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1evha4au/libpmix2t64_5.0.6-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Fetched 314 kB in 0s (22.2 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmptgywg2py/libmagic-mgc_5.45-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 26.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpes2s_1vp/pkgconf_1.8.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Fetched 75.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkketmfe7/libgdbm6t64_1.24-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Fetched 5136 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpy9m94f57/gcc_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Fetched 316 kB in 0s (28.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6v7yy4fp/libbrotli-dev_1.1.0-2+b7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17 [11.7 MB] Fetched 11.7 MB in 0s (143 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpstw64nap/gfortran-14-x86-64-linux-gnu_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 man-db amd64 2.13.0-1 [1420 kB] Fetched 1420 kB in 0s (83.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8rds20c0/man-db_2.13.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libmpfr6 amd64 4.2.1-1+b2 [724 kB] Fetched 724 kB in 0s (55.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_yxzpgba/libmpfr6_4.2.1-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgprofng0 amd64 2.44-2 [808 kB] Fetched 808 kB in 0s (58.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpclet4ky2/libgprofng0_2.44-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Fetched 535 kB in 0s (40.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp84ai9lh4/libhsa-runtime64-1_6.1.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Fetched 51.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vk2us54/libpciaccess0_0.17-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Fetched 169 kB in 0s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg75_4nsa/libreadline8t64_8.2-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Fetched 859 kB in 0s (57.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkiildxeo/libpython3.13-minimal_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Fetched 91.3 kB in 0s (7748 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm__qbcrz/libnghttp3-dev_1.8.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libamdhip64-5 amd64 5.7.1-5+b1 [8882 kB] Fetched 8882 kB in 0s (76.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_e2hzr5/libamdhip64-5_5.7.1-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Fetched 250 kB in 0s (21.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwbig8azq/libjs-jquery-ui_1.13.2+dfsg-1_all.deb' Downloading dependency 1 of 310: python3.13-dev:amd64=3.13.2-1 Downloading dependency 2 of 310: openssh-client:amd64=1:9.9p2-1 Downloading dependency 3 of 310: libbz2-1.0:amd64=1.0.8-6 Downloading dependency 4 of 310: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 5 of 310: libkeyutils1:amd64=1.6.3-4 Downloading dependency 6 of 310: hostname:amd64=3.25 Downloading dependency 7 of 310: libkrb5-dev:amd64=1.21.3-4 Downloading dependency 8 of 310: libibverbs-dev:amd64=56.0-2 Downloading dependency 9 of 310: libexpat1-dev:amd64=2.6.4-1 Downloading dependency 10 of 310: ncurses-base:amd64=6.5+20250216-1 Downloading dependency 11 of 310: 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Downloading dependency 59 of 310: perl-modules-5.40:amd64=5.40.1-2 Downloading dependency 60 of 310: python3-all-dev:amd64=3.13.2-2 Downloading dependency 61 of 310: libitm1:amd64=14.2.0-17 Downloading dependency 62 of 310: libsystemd0:amd64=257.3-1 Downloading dependency 63 of 310: grep:amd64=3.11-4 Downloading dependency 64 of 310: libnghttp2-14:amd64=1.64.0-1 Downloading dependency 65 of 310: ocl-icd-libopencl1:amd64=2.3.2-1+b2 Downloading dependency 66 of 310: libnl-3-200:amd64=3.7.0-0.3+b1 Downloading dependency 67 of 310: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 68 of 310: g++-14-x86-64-linux-gnu:amd64=14.2.0-17 Downloading dependency 69 of 310: libjs-jquery:amd64=3.6.1+dfsg+~3.5.14-1 Downloading dependency 70 of 310: autotools-dev:amd64=20220109.1 Downloading dependency 71 of 310: cmake-data:amd64=3.31.6-1 Downloading dependency 72 of 310: libssl-dev:amd64=3.4.1-1 Downloading dependency 73 of 310: libxext6:amd64=2:1.3.4-1+b3 Downloading dependency 74 of 310: libpython3.13:amd64=3.13.2-1 Downloading dependency 75 of 310: libmd0:amd64=1.1.0-2+b1 Downloading dependency 76 of 310: libsframe1:amd64=2.44-2 Downloading dependency 77 of 310: comerr-dev:amd64=2.1-1.47.2-1 Downloading dependency 78 of 310: libunbound8:amd64=1.22.0-1+b1 Downloading dependency 79 of 310: libatomic1:amd64=14.2.0-17 Downloading dependency 80 of 310: libamd-comgr2:amd64=6.0+git20231212.4510c28+dfsg-3+b2 Downloading dependency 81 of 310: init-system-helpers:amd64=1.68 Downloading dependency 82 of 310: libopenmpi40:amd64=5.0.7-1 Downloading dependency 83 of 310: libfabric1:amd64=1.17.0-3.1 Downloading dependency 84 of 310: pkgconf-bin:amd64=1.8.1-4 Downloading dependency 85 of 310: libfile-stripnondeterminism-perl:amd64=1.14.1-2 Downloading dependency 86 of 310: g++-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 87 of 310: sysvinit-utils:amd64=3.14-3 Downloading dependency 88 of 310: libhwloc-plugins:amd64=2.12.0-1 Downloading dependency 89 of 310: libldap2:amd64=2.6.9+dfsg-1 Downloading dependency 90 of 310: libp11-kit0:amd64=0.25.5-3 Downloading dependency 91 of 310: sed:amd64=4.9-2 Downloading dependency 92 of 310: dwz:amd64=0.15-1+b1 Downloading dependency 93 of 310: python3-minimal:amd64=3.13.2-2 Downloading dependency 94 of 310: binutils:amd64=2.44-2 Downloading dependency 95 of 310: coreutils:amd64=9.5-1+b1 Downloading dependency 96 of 310: libsasl2-2:amd64=2.1.28+dfsg1-9 Downloading dependency 97 of 310: libsqlite3-dev:amd64=3.46.1-1 Downloading dependency 98 of 310: base-passwd:amd64=3.6.6 Downloading dependency 99 of 310: libxnvctrl0:amd64=535.171.04-1+b2 Downloading dependency 100 of 310: libubsan1:amd64=14.2.0-17 Downloading dependency 101 of 310: gcc-14-base:amd64=14.2.0-17 Downloading dependency 102 of 310: libpsm-infinipath1:amd64=3.3+20.604758e7-6.3 Downloading dependency 103 of 310: m4:amd64=1.4.19-5 Downloading dependency 104 of 310: libproc2-0:amd64=2:4.0.4-7 Downloading dependency 105 of 310: 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libmpfr6:amd64=4.2.1-1+b2 Downloading dependency 122 of 310: libgprofng0:amd64=2.44-2 Downloading dependency 123 of 310: libhsa-runtime64-1:amd64=6.1.2-3 Downloading dependency 124 of 310: libpciaccess0:amd64=0.17-3+b3 Downloading dependency 125 of 310: libreadline8t64:amd64=8.2-6 Downloading dependency 126 of 310: libpython3.13-minimal:amd64=3.13.2-1 Downloading dependency 127 of 310: libnghttp3-dev:amd64=1.8.0-1 Downloading dependency 128 of 310: libamdhip64-5:amd64=5.7.1-5+b1 Downloading dependency 129 of 310: libjs-jquery-ui:amd64=1.13.2+dfsg-1 Downloading dependency 130 of 310: libnl-3-dev:amd64=3.7.0-0.3+b1Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Fetched 100 kB in 0s (4861 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd2zonrss/libnl-3-dev_3.7.0-0.3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Fetched 699 kB in 0s (51.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3v9mpxzm/libxml2_2.12.7+dfsg+really2.9.14-0.2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Fetched 245 kB in 0s (21.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpng0eweib/libssh2-1t64_1.11.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (1170 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmphbletkkf/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libstdc++-14-dev amd64 14.2.0-17 [2373 kB] Fetched 2373 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8jivbdf/libstdc++-14-dev_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Fetched 24.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgfbx1u0d/libcom-err2_1.47.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 dpkg amd64 1.22.15 [1537 kB] Fetched 1537 kB in 0s (76.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxj_9qvw5/dpkg_1.22.15_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Fetched 57.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7xw02vul/libpsl5t64_0.21.2-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gettext amd64 0.23.1-1 [1680 kB] Fetched 1680 kB in 0s (88.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkxwkp7cz/gettext_0.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpam-modules-bin amd64 1.7.0-3 [48.9 kB] Fetched 48.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0fhj0jl/libpam-modules-bin_1.7.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Fetched 2205 kB in 0s (100 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzswky9w0/python3.13-minimal_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Fetched 132 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9x3ac7pa/librhash1_1.4.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libmount1 amd64 2.40.4-5 [200 kB] Fetched 200 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5xypba1/libmount1_2.40.4-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Fetched 1318 kB in 0s (75.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu3e8t3t5/nettle-dev_3.10.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Fetched 1979 kB in 0s (98.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi8r6pvyk/libpython3.13-stdlib_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 passwd amd64 1:4.17.3-1 [1227 kB] Fetched 1227 kB in 0s (75.0 MB/s) dpkg-name: info: moved 'passwd_1%3a4.17.3-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp81vig8un/passwd_4.17.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 tzdata all 2025a-2 [259 kB] Fetched 259 kB in 0s (24.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp21m447t3/tzdata_2025a-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Fetched 129 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmjfjk7gh/libidn2-0_2.3.7-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpemo2m7tx/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Fetched 642 kB in 0s (51.4 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpf_t_3fnb/libgmp-dev_6.3.0+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Fetched 30.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg5_hatz7/libjs-sphinxdoc_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Fetched 5005 kB in 0s (129 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4u17ff75/libpython3.13-dev_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Fetched 208 kB in 0s (18.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxkpamp3u/libp11-kit-dev_0.25.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 binutils-x86-64-linux-gnu amd64 2.44-2 [1015 kB] Fetched 1015 kB in 0s (61.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp0tc8b7_/binutils-x86-64-linux-gnu_2.44-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 mpi-default-dev amd64 1.18 [3372 B] Fetched 3372 B in 0s (203 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6_jok4or/mpi-default-dev_1.18_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Fetched 337 kB in 0s (30.1 MB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.10-2_all.deb' to '/srv/rebuilderd/tmp/tmp2tbw68ou/libx11-data_1.8.10-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Fetched 132 kB in 0s (6178 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_6l01dmh/libevent-core-2.1-7t64_2.1.12-stable-10+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 media-types all 12.0.0 [28.9 kB] Fetched 28.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1m2hpa8a/media-types_12.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libssl3t64 amd64 3.4.1-1 [2304 kB] Fetched 2304 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmputurm9oc/libssl3t64_3.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Fetched 50.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpogjlbte1/libgdbm-compat4t64_1.24-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libunistring5 amd64 1.3-1 [476 kB] Fetched 476 kB in 0s (40.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4zifyo_f/libunistring5_1.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 util-linux amd64 2.40.4-5 [1205 kB] Fetched 1205 kB in 0s (70.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpulbf94vl/util-linux_2.40.4-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libhwasan0 amd64 14.2.0-17 [1489 kB] Fetched 1489 kB in 0s (80.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwaqckvml/libhwasan0_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsepol2 amd64 3.8-1 [296 kB] Fetched 296 kB in 0s (23.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppbxpg9gv/libsepol2_3.8-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 libucx0 amd64 1.18.1+ds-1 [1197 kB] Fetched 1197 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw9l_gkow/libucx0_1.18.1+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libngtcp2-dev amd64 1.11.0-1 [179 kB] Fetched 179 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1co66pc3/libngtcp2-dev_1.11.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Fetched 455 kB in 0s (38.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk8f8mmvt/libgnutls-dane0t64_3.8.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Fetched 878 kB in 0s (14.6 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpuc5sva8z/procps_4.0.4-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 bsdutils amd64 1:2.40.4-5 [106 kB] Fetched 106 kB in 0s (0 B/s) dpkg-name: info: moved 'bsdutils_1%3a2.40.4-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp_irpqsng/bsdutils_2.40.4-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Fetched 54.3 kB in 0s (3259 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb792umv5/libevent-pthreads-2.1-7t64_2.1.12-stable-10+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 binutils-common amd64 2.44-2 [2508 kB] Fetched 2508 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmajxk0nl/binutils-common_2.44-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libibumad3 amd64 56.0-2 [29.8 kB] Fetched 29.8 kB in 0s (1965 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps6jutjyg/libibumad3_56.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvv9ndm5q/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Fetched 813 kB in 0s (43.7 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.10-2_amd64.deb' to '/srv/rebuilderd/tmp/tmp56_h_u_1/libx11-6_1.8.10-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libtsan2 amd64 14.2.0-17 [2460 kB] Fetched 2460 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptb3p0tmx/libtsan2_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libasan8 amd64 14.2.0-17 [2730 kB] Fetched 2730 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6suryuw/libasan8_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (219 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpufj30t_q/libattr1_2.5.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Fetched 78.7 kB in 0s (3247 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7he3jnab/libfido2-1_1.15.0-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 netbase all 6.4 [12.8 kB] Fetched 12.8 kB in 0s (520 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjz269g6n/netbase_6.4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Fetched 393 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo9yujljl/libssh2-1-dev_1.11.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Fetched 28.3 kB in 0s (2738 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkrot8hjd/libcbor0.10_0.10.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Fetched 913 kB in 0s (2230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy64304dg/libsqlite3-0_3.46.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgfortran-14-dev amd64 14.2.0-17 [879 kB] Fetched 879 kB in 0s (60.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl500jq68/libgfortran-14-dev_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 patch amd64 2.7.6-7 [128 kB] Fetched 128 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcfzu5r45/patch_2.7.6-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Fetched 92.4 kB in 0s (7063 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprfb9230b/bsdextrautils_2.40.4-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250622T153059Z sid/main amd64 libltdl-dev amd64 2.5.4-4 [168 kB] Fetched 168 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1_5sq4a/libltdl-dev_2.5.4-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17 [11.0 MB] Fetched 11.0 MB in 0s (137 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjv0pry_9/cpp-14-x86-64-linux-gnu_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Fetched 305 kB in 0s (7413 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzyb5xm02/libevent-dev_2.1.12-stable-10+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Fetched 58.8 kB in 0s (4917 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmcej81wk/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libicu72 amd64 72.1-6 [9421 kB] Fetched 9421 kB in 0s (122 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe9vhgi7t/libicu72_72.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gfortran-14 amd64 14.2.0-17 [14.0 kB] Fetched 14.0 kB in 0s (754 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphmjch6z0/gfortran-14_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 librdmacm1t64 amd64 56.0-2 [70.2 kB] Fetched 70.2 kB in 0s (3684 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0y215mir/librdmacm1t64_56.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 linux-libc-dev all 6.12.17-1 [2526 kB] Fetched 2526 kB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdr0q9twk/linux-libc-dev_6.12.17-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libbsd0 amd64 0.12.2-2 [131 kB] Fetched 131 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpukao23u3/libbsd0_0.12.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 ncurses-bin amd64 6.5+20250216-1 [439 kB] Fetched 439 kB in 0s (36.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3r2gfqat/ncurses-bin_6.5+20250216-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libctf0 amd64 2.44-2 [88.4 kB] Fetched 88.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp__c7itms/libctf0_2.44-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Fetched 298 kB in 0s (22.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppjnhp_97/libpcre2-8-0_10.45-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm5n9rnls/libnghttp2-dev_1.64.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Fetched 42.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx53upqzj/libpipeline1_1.5.8-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 debconf all 1.5.89 [120 kB] Fetched 120 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgck_1ju/debconf_1.5.89_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 findutils amd64 4.10.0-3 [700 kB] Fetched 700 kB in 0s (52.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwd_f0ty1/findutils_4.10.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy822psav/krb5-multidev_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 liblzma5 amd64 5.6.4-1 [280 kB] Fetched 280 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbpyo4mn/liblzma5_5.6.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Fetched 27.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vixk9qi/libxxhash0_0.8.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libstdc++6 amd64 14.2.0-17 [713 kB] Fetched 713 kB in 0s (53.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3gtyoerj/libstdc++6_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgomp1 amd64 14.2.0-17 [137 kB] Fetched 137 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprd0t4idh/libgomp1_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Fetched 93.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp94x44_9/libedit2_3.1-20250104-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 openmpi-common all 5.0.7-1 [97.2 kB] Fetched 97.2 kB in 0s (409 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfuvwclm1/openmpi-common_5.0.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 adduser all 3.144 [109 kB] Fetched 109 kB in 0s (5792 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf77myyx0/adduser_3.144_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Fetched 369 kB in 0s (33.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5zut5rv/libcurl4t64_8.12.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Fetched 305 kB in 0s (26.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcpifid8j/libnettle8t64_3.10.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libquadmath0 amd64 14.2.0-17 [145 kB] Fetched 145 kB in 0s (7654 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8s9ffh8b/libquadmath0_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Fetched 54.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpixkyiyef/libkadm5srv-mit12_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 g++-14 amd64 14.2.0-17 [22.1 kB] Fetched 22.1 kB in 0s (1951 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcyv__tk1/g++-14_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libc-bin amd64 2.41-3 [635 kB] Fetched 635 kB in 0s (46.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4t0am4rl/libc-bin_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Fetched 815 kB in 0s (43.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpva3u0tkx/tar_1.35+dfsg-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgcc-14-dev amd64 14.2.0-17 [2673 kB] Fetched 2673 kB in 0s (99.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx4ak5fr_/libgcc-14-dev_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libhwloc15 amd64 2.12.0-1 [164 kB] Fetched 164 kB in 0s (15.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp389imei3/libhwloc15_2.12.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 liblz4-1 amd64 1.10.0-3 [63.8 kB] Fetched 63.8 kB in 0s (1862 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5vpn7tk2/liblz4-1_1.10.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libdebconfclient0 amd64 0.277 [10.4 kB] Fetched 10.4 kB in 0s (837 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rik4gu7/libdebconfclient0_0.277_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsmartcols1 amd64 2.40.4-5 [140 kB] Fetched 140 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvyoohwuz/libsmartcols1_2.40.4-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Fetched 20.4 kB in 0s (952 kB/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpvv809qus/libxau6_1.0.11-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Fetched 123 kB in 0s (5549 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptc0svapo/libidn2-dev_2.3.7-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Fetched 61.1 kB in 0s (648 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_xtgl7zg/libevent-openssl-2.1-7t64_2.1.12-stable-10+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 xz-utils amd64 5.6.4-1 [554 kB] Fetched 554 kB in 0s (7902 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpidyiai9z/xz-utils_5.6.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Fetched 80.9 kB in 0s (3498 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpikl5jsbh/libk5crypto3_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Fetched 68.0 kB in 0s (2708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2cdldfi5/librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 perl-base amd64 5.40.1-2 [1665 kB] Fetched 1665 kB in 0s (32.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplbovppia/perl-base_5.40.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Fetched 43.3 kB in 0s (4088 kB/s) dpkg-name: info: moved 'file_1%3a5.45-3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpj8bfyb49/file_5.45-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Fetched 189 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lvz8qc5/libelf1t64_0.192-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Fetched 61.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpho8dpsw3/libhsakmt1_6.2.4+ds-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 make amd64 4.4.1-1 [463 kB] Fetched 463 kB in 0s (33.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9baygjew/make_4.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Fetched 119 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpp7nhx008/libcrypt-dev_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 debhelper all 13.24.1 [920 kB] Fetched 920 kB in 0s (49.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplpxfzf4_/debhelper_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Fetched 10.1 kB in 0s (954 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5t0085l8/libpython3-stdlib_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Fetched 1568 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpgji2_78d/cpp_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (18.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc4rcvwlp/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 ibverbs-providers amd64 56.0-2 [357 kB] Fetched 357 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmezh4ll3/ibverbs-providers_56.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libibmad5 amd64 56.0-2 [44.3 kB] Fetched 44.3 kB in 0s (443 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwo2pjpku/libibmad5_56.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 base-files amd64 13.6 [72.8 kB] Fetched 72.8 kB in 0s (6156 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcmaxosid/base-files_13.6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Fetched 36.4 kB in 0s (2521 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfw_40x3/libpkgconf3_1.8.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 python3-dev amd64 3.13.2-2 [26.1 kB] Fetched 26.1 kB in 0s (1635 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqrdpz5s/python3-dev_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 liblsan0 amd64 14.2.0-17 [1205 kB] Fetched 1205 kB in 0s (63.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrp2lsvr/liblsan0_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgfortran5 amd64 14.2.0-17 [836 kB] Fetched 836 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj6bdu4ak/libgfortran5_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Fetched 49.9 kB in 0s (4357 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt_5fjnec/libtasn1-6_4.20.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsemanage-common all 3.8-1 [7720 B] Fetched 7720 B in 0s (563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpti6qis1x/libsemanage-common_3.8-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Fetched 181 kB in 0s (610 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg89ru1m_/libpsm2-2_11.2.185-2.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 libpython3-dev amd64 3.13.2-2 [10.3 kB] Fetched 10.3 kB in 0s (385 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcby3evz9/libpython3-dev_3.13.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Fetched 32.8 kB in 0s (3129 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppiwlwxsk/libkrb5support0_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Fetched 182 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeofklare/libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Fetched 182 kB in 0s (2632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24x9_o30/libnl-route-3-200_3.7.0-0.3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Fetched 131 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0ole8l9/libngtcp2-16_1.11.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Fetched 27.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpuld7l8uz/libxdmcp6_1.1.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpam-modules amd64 1.7.0-3 [177 kB] Fetched 177 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe0jn8wj4/libpam-modules_1.7.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libseccomp2 amd64 2.5.5-2+b1 [48.1 kB] Fetched 48.1 kB in 0s (4728 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy_hde_m0/libseccomp2_2.5.5-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250305T084405Z sid/main amd64 libpmix-dev amd64 5.0.6-4 [3961 kB] Fetched 3961 kB in 0s (60.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xyf7v6r/libpmix-dev_5.0.6-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (4013 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmple34hrbe/bzip2_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Fetched 1401 kB in 0s (78.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp43ce6lyw/libgnutls28-dev_3.8.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcurl3t64-gnutls amd64 8.12.1-3 [365 kB] Fetched 365 kB in 0s (27.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcyeo9wu2/libcurl3t64-gnutls_8.12.1-3_amd64.deb' Downloading dependency 131 of 310: libxml2:amd64=2.12.7+dfsg+really2.9.14-0.2+b2 Downloading dependency 132 of 310: libssh2-1t64:amd64=1.11.1-1 Downloading dependency 133 of 310: libaudit-common:amd64=1:4.0.2-2 Downloading dependency 134 of 310: libstdc++-14-dev:amd64=14.2.0-17 Downloading dependency 135 of 310: libcom-err2:amd64=1.47.2-1 Downloading dependency 136 of 310: dpkg:amd64=1.22.15 Downloading dependency 137 of 310: libpsl5t64:amd64=0.21.2-1.1+b1 Downloading dependency 138 of 310: gettext:amd64=0.23.1-1 Downloading dependency 139 of 310: libpam-modules-bin:amd64=1.7.0-3 Downloading dependency 140 of 310: python3.13-minimal:amd64=3.13.2-1 Downloading dependency 141 of 310: librhash1:amd64=1.4.5-1 Downloading dependency 142 of 310: libmount1:amd64=2.40.4-5 Downloading dependency 143 of 310: nettle-dev:amd64=3.10.1-1 Downloading dependency 144 of 310: libpython3.13-stdlib:amd64=3.13.2-1 Downloading dependency 145 of 310: passwd:amd64=1:4.17.3-1 Downloading dependency 146 of 310: tzdata:amd64=2025a-2 Downloading dependency 147 of 310: libidn2-0:amd64=2.3.7-2+b1 Downloading dependency 148 of 310: readline-common:amd64=8.2-6 Downloading dependency 149 of 310: libgmp-dev:amd64=2:6.3.0+dfsg-3 Downloading dependency 150 of 310: libjs-sphinxdoc:amd64=8.1.3-5 Downloading dependency 151 of 310: libpython3.13-dev:amd64=3.13.2-1 Downloading dependency 152 of 310: libp11-kit-dev:amd64=0.25.5-3 Downloading dependency 153 of 310: binutils-x86-64-linux-gnu:amd64=2.44-2 Downloading dependency 154 of 310: mpi-default-dev:amd64=1.18 Downloading dependency 155 of 310: libx11-data:amd64=2:1.8.10-2 Downloading dependency 156 of 310: libevent-core-2.1-7t64:amd64=2.1.12-stable-10+b1 Downloading dependency 157 of 310: media-types:amd64=12.0.0 Downloading dependency 158 of 310: libssl3t64:amd64=3.4.1-1 Downloading dependency 159 of 310: libgdbm-compat4t64:amd64=1.24-2 Downloading dependency 160 of 310: libunistring5:amd64=1.3-1 Downloading dependency 161 of 310: util-linux:amd64=2.40.4-5 Downloading dependency 162 of 310: libhwasan0:amd64=14.2.0-17 Downloading dependency 163 of 310: libsepol2:amd64=3.8-1 Downloading dependency 164 of 310: libucx0:amd64=1.18.1+ds-1 Downloading dependency 165 of 310: libngtcp2-dev:amd64=1.11.0-1 Downloading dependency 166 of 310: libgnutls-dane0t64:amd64=3.8.9-2 Downloading dependency 167 of 310: procps:amd64=2:4.0.4-7 Downloading dependency 168 of 310: bsdutils:amd64=1:2.40.4-5 Downloading dependency 169 of 310: libevent-pthreads-2.1-7t64:amd64=2.1.12-stable-10+b1 Downloading dependency 170 of 310: binutils-common:amd64=2.44-2 Downloading dependency 171 of 310: libibumad3:amd64=56.0-2 Downloading dependency 172 of 310: dh-strip-nondeterminism:amd64=1.14.1-2 Downloading dependency 173 of 310: libx11-6:amd64=2:1.8.10-2 Downloading dependency 174 of 310: libtsan2:amd64=14.2.0-17 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Downloading dependency 238 of 310: libibmad5:amd64=56.0-2 Downloading dependency 239 of 310: base-files:amd64=13.6 Downloading dependency 240 of 310: libpkgconf3:amd64=1.8.1-4 Downloading dependency 241 of 310: python3-dev:amd64=3.13.2-2 Downloading dependency 242 of 310: liblsan0:amd64=14.2.0-17 Downloading dependency 243 of 310: libgfortran5:amd64=14.2.0-17 Downloading dependency 244 of 310: libtasn1-6:amd64=4.20.0-2 Downloading dependency 245 of 310: libsemanage-common:amd64=3.8-1 Downloading dependency 246 of 310: libpsm2-2:amd64=11.2.185-2.1 Downloading dependency 247 of 310: libpython3-dev:amd64=3.13.2-2 Downloading dependency 248 of 310: libkrb5support0:amd64=1.21.3-4 Downloading dependency 249 of 310: libevent-2.1-7t64:amd64=2.1.12-stable-10+b1 Downloading dependency 250 of 310: libnl-route-3-200:amd64=3.7.0-0.3+b1 Downloading dependency 251 of 310: libngtcp2-16:amd64=1.11.0-1 Downloading dependency 252 of 310: libxdmcp6:amd64=1:1.1.5-1 Downloading dependency 253 of 310: libpam-modules:amd64=1.7.0-3 Downloading dependency 254 of 310: libseccomp2:amd64=2.5.5-2+b1 Downloading dependency 255 of 310: libpmix-dev:amd64=5.0.6-4 Downloading dependency 256 of 310: bzip2:amd64=1.0.8-6 Downloading dependency 257 of 310: libgnutls28-dev:amd64=3.8.9-2 Downloading dependency 258 of 310: libcurl3t64-gnutls:amd64=8.12.1-3 Downloading dependency 259 of 310: libmpc3:amd64=1.3.1-1+b3Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplo0n66_z/libmpc3_1.3.1-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 diffutils amd64 1:3.10-2 [384 kB] Fetched 384 kB in 0s (33.4 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpd1z4laf4/diffutils_3.10-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 bash amd64 5.2.37-1.1 [1500 kB] Fetched 1500 kB in 0s (45.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4vrit7u/bash_5.2.37-1.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 chrpath amd64 0.18-1 [13.5 kB] Fetched 13.5 kB in 0s (1325 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmposjm52uh/chrpath_0.18-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 openmpi-bin amd64 5.0.7-1 [189 kB] Fetched 189 kB in 0s (7248 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg3bbt9np/openmpi-bin_5.0.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Fetched 335 kB in 0s (23.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnq7cfr2j/libhogweed6t64_3.10.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (7874 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8rr2bv6p/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250622T153059Z sid/main amd64 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 1s (1050 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_h3xdcxs/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Fetched 88.9 kB in 0s (802 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpith5xsvo/zlib1g_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Fetched 39.8 kB in 0s (918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkqxvmot2/libjansson4_2.14-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpam0g amd64 1.7.0-3 [69.7 kB] Fetched 69.7 kB in 0s (2490 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps68gubh9/libpam0g_1.7.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gcc-14 amd64 14.2.0-17 [537 kB] Fetched 537 kB in 0s (1836 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_r17mbc/gcc-14_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libc-dev-bin amd64 2.41-3 [58.0 kB] Fetched 58.0 kB in 0s (1007 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpknf_3kde/libc-dev-bin_2.41-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Fetched 42.2 kB in 0s (540 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe26kdsfz/libkadm5clnt-mit12_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcurl4-gnutls-dev amd64 8.12.1-3 [480 kB] Fetched 480 kB in 1s (574 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp18py5ict/libcurl4-gnutls-dev_8.12.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Fetched 200 kB in 0s (1512 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_tkkmdv2/libnl-route-3-dev_3.7.0-0.3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB] Fetched 17.6 kB in 0s (1439 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40iuz8qo/libcap-ng0_0.8.5-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Fetched 243 kB in 0s (817 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxken9gs2/gettext-base_0.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Fetched 704 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5kk2o7in/libdb5.3t64_5.3.28+dfsg2-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Fetched 12.0 MB in 0s (42.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ye7lh0t/cmake_3.31.6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Fetched 36.6 kB in 0s (1112 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj3glqeq7/libnuma-dev_2.0.18-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Fetched 106 kB in 0s (9347 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeyz46y6i/libexpat1_2.6.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libbinutils amd64 2.44-2 [535 kB] Fetched 535 kB in 0s (38.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5fh49qmm/libbinutils_2.44-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libisl23 amd64 0.27-1 [659 kB] Fetched 659 kB in 0s (37.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpibr53xx_/libisl23_0.27-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpid02osos/libpam-runtime_1.7.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libblkid1 amd64 2.40.4-5 [169 kB] Fetched 169 kB in 0s (8377 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1qyrci8c/libblkid1_2.40.4-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Fetched 108 kB in 0s (595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8xt9qed/libevent-extra-2.1-7t64_2.1.12-stable-10+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Fetched 307 kB in 0s (25.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_f5pwd2m/libbrotli1_1.1.0-2+b7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Fetched 67.7 kB in 0s (5153 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt2j4lwl1/libnghttp3-9_1.8.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Fetched 144 kB in 0s (9687 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpik08fv2a/libxcb1_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libctf-nobfd0 amd64 2.44-2 [156 kB] Fetched 156 kB in 0s (14.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9k7vqi6r/libctf-nobfd0_2.44-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 debianutils amd64 5.21 [92.1 kB] Fetched 92.1 kB in 0s (8779 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3hfn9ave/debianutils_5.21_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 perl amd64 5.40.1-2 [267 kB] Fetched 267 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3564nppq/perl_5.40.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libncursesw6 amd64 6.5+20250216-1 [136 kB] Fetched 136 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjt8ml_u4/libncursesw6_6.5+20250216-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Fetched 1344 B in 0s (127 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpu8a65zyw/g++_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 dpkg-dev all 1.22.15 [1337 kB] Fetched 1337 kB in 0s (66.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvj8cadc1/dpkg-dev_1.22.15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libibverbs1 amd64 56.0-2 [62.2 kB] Fetched 62.2 kB in 0s (3488 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplng5_o9n/libibverbs1_56.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libsemanage2 amd64 3.8-1+b1 [94.7 kB] Fetched 94.7 kB in 0s (8273 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplnw5a04m/libsemanage2_3.8-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libopenmpi-dev amd64 5.0.7-1 [1089 kB] Fetched 1089 kB in 0s (34.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpownmzy68/libopenmpi-dev_5.0.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libselinux1 amd64 3.8-4 [84.8 kB] Fetched 84.8 kB in 0s (7384 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ci0oc7j/libselinux1_3.8-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 dash amd64 0.5.12-12 [98.5 kB] Fetched 98.5 kB in 0s (9755 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkpcsskyv/dash_0.5.12-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libtinfo6 amd64 6.5+20250216-1 [348 kB] Fetched 348 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl0d4lixn/libtinfo6_6.5+20250216-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17 [21.4 MB] Fetched 21.4 MB in 0s (122 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoa6pd51u/gcc-14-x86-64-linux-gnu_14.2.0-17_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Fetched 42.4 kB in 0s (3663 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4zvc0oum/libkdb5-10t64_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 automake all 1:1.17-3 [862 kB] Fetched 862 kB in 0s (39.7 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-3_all.deb' to '/srv/rebuilderd/tmp/tmptikvhfnv/automake_1.17-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Fetched 116 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb4afr2eq/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Fetched 29.3 kB in 0s (1471 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_tw2_438/libngtcp2-crypto-gnutls8_1.11.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libuuid1 amd64 2.40.4-5 [36.5 kB] Fetched 36.5 kB in 0s (3128 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp81pt42k3/libuuid1_2.40.4-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Fetched 141 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwblxvho9/mawk_1.3.4.20250131-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (1211 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpau1fqp_g/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Fetched 745 kB in 0s (38.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3y90o19_/python3.13_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250303T214758Z sid/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Fetched 77.6 kB in 0s (6460 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyu7gv2kz/libpsl-dev_0.21.2-1.1+b1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpjftsro6w/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV 127.0.0.1 - - [23/Jun/2025 09:37:08] code 404, message File not found 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:40227 ./ InRelease 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:40227 ./ Release [462 B] 127.0.0.1 - - [23/Jun/2025 09:37:08] code 404, message File not found 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:40227 ./ Release.gpg 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:40227 ./ Packages [383 kB] Fetched 384 kB in 0s (11.7 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./gcc-14-base_14.2.0-17_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libc6_2.41-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libgcc-s1_14.2.0-17_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./mawk_1.3.4.20250131-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./base-files_13.6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libtinfo6_6.5%2b20250216-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./debianutils_5.21_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./bash_5.2.37-1.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libcap2_2.73-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libsystemd0_257.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./bsdutils_2.40.4-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libacl1_2.3.2-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libattr1_2.5.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libgmp10_6.3.0%2bdfsg-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libpcre2-8-0_10.45-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libselinux1_3.8-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libzstd1_1.5.6%2bdfsg-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libssl3t64_3.4.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./openssl-provider-legacy_3.4.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./coreutils_9.5-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./dash_0.5.12-12_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./diffutils_3.10-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libbz2-1.0_1.0.8-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./liblzma5_5.6.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libmd0_1.1.0-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./tar_1.35%2bdfsg-3.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./dpkg_1.22.15_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./findutils_4.10.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./grep_3.11-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./gzip_1.13-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./hostname_3.25_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./ncurses-bin_6.5%2b20250216-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./libcrypt1_4.4.38-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:08] "GET /./perl-base_5.40.1-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./sed_4.9-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libaudit-common_4.0.2-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libcap-ng0_0.8.5-4%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libaudit1_4.0.2-2%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./debconf_1.5.89_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libpam0g_1.7.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libpam-modules-bin_1.7.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libpam-modules_1.7.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libpam-runtime_1.7.0-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libblkid1_2.40.4-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libmount1_2.40.4-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libsmartcols1_2.40.4-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libudev1_257.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libuuid1_2.40.4-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./util-linux_2.40.4-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libdebconfclient0_0.277_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./base-passwd_3.6.6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./libc-bin_2.41-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./ncurses-base_6.5%2b20250216-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:09] "GET /./sysvinit-utils_3.14-3_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV 127.0.0.1 - - [23/Jun/2025 09:37:10] code 404, message File not found 127.0.0.1 - - [23/Jun/2025 09:37:10] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:40227 ./ InRelease 127.0.0.1 - - [23/Jun/2025 09:37:10] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:40227 ./ Release 127.0.0.1 - - [23/Jun/2025 09:37:10] code 404, message File not found 127.0.0.1 - - [23/Jun/2025 09:37:10] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:40227 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libpython3.13-minimal_3.13.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libexpat1_2.6.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./python3.13-minimal_3.13.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./python3-minimal_3.13.2-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./media-types_12.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./netbase_6.4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./tzdata_2025a-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libffi8_3.4.7-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libncursesw6_6.5%2b20250216-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./readline-common_8.2-6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libreadline8t64_8.2-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libsqlite3-0_3.46.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libpython3.13-stdlib_3.13.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./python3.13_3.13.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libpython3-stdlib_3.13.2-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./python3_3.13.2-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./login.defs_4.17.3-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libbsd0_0.12.2-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:16] "GET /./libsemanage-common_3.8-1_all.deb HTTP/1.1" 200 - 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127.0.0.1 - - [23/Jun/2025 09:37:20] "GET /./librtmp-dev_2.4%2b20151223.gitfa8646d.1-2%2bb5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:20] "GET /./libcurl3t64-gnutls_8.12.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:20] "GET /./libpsl-dev_0.21.2-1.1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:20] "GET /./libcurl4-gnutls-dev_8.12.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jun/2025 09:37:20] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpjftsro6w/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV Reading package lists... Building dependency tree... Reading state information... python3.13-dev is already the newest version (3.13.2-1). python3.13-dev set to manually installed. openssh-client is already the newest version (1:9.9p2-1). openssh-client set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libkeyutils1 is already the newest version (1.6.3-4). libkeyutils1 set to manually installed. hostname is already the newest version (3.25). libkrb5-dev is already the newest version (1.21.3-4). libkrb5-dev set to manually installed. libibverbs-dev is already the newest version (56.0-2). libibverbs-dev set to manually installed. libexpat1-dev is already the newest version (2.6.4-1). libexpat1-dev set to manually installed. ncurses-base is already the newest version (6.5+20250216-1). libzstd-dev is already the newest version (1.5.6+dfsg-2). libzstd-dev set to manually installed. libcc1-0 is already the newest version (14.2.0-17). libcc1-0 set to manually installed. libmunge2 is already the newest version (0.5.16-1). libmunge2 set to manually installed. libperl5.40 is already the newest version (5.40.1-2). libperl5.40 set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). libc6-dev is already the newest version (2.41-3). libc6-dev set to manually installed. libgcc-s1 is already the newest version (14.2.0-17). libpython3-all-dev is already the newest version (3.13.2-2). libpython3-all-dev set to manually installed. libgssrpc4t64 is already the newest version (1.21.3-4). libgssrpc4t64 set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b2). openssl-provider-legacy is already the newest version (3.4.1-1). libgnutls-openssl27t64 is already the newest version (3.8.9-2). libgnutls-openssl27t64 set to manually installed. libhwloc-dev is already the newest version (2.12.0-1). libhwloc-dev set to manually installed. libdebhelper-perl is already the newest version (13.24.1). libdebhelper-perl set to manually installed. python3 is already the newest version (3.13.2-2). python3 set to manually installed. cpp-14 is already the newest version (14.2.0-17). cpp-14 set to manually installed. libltdl7 is already the newest version (2.5.4-4). libltdl7 set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-9). libsasl2-modules-db set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libz3-4 is already the newest version (4.13.3-1). libz3-4 set to manually installed. libgnutls30t64 is already the newest version (3.8.9-2). libgnutls30t64 set to manually installed. libc6 is already the newest version (2.41-3). libtasn1-6-dev is already the newest version (4.20.0-2). libtasn1-6-dev set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libllvm17t64 is already the newest version (1:17.0.6-21). libllvm17t64 set to manually installed. login.defs is already the newest version (1:4.17.3-1). login.defs set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:14.2.0-1). gcc-x86-64-linux-gnu set to manually installed. gzip is already the newest version (1.13-1). libcap2 is already the newest version (1:2.73-4). libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-3). libgmpxx4ldbl set to manually installed. libzstd1 is already the newest version (1.5.6+dfsg-2). rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libldap-dev is already the newest version (2.6.9+dfsg-1). libldap-dev set to manually installed. libuv1t64 is already the newest version (1.50.0-2). libuv1t64 set to manually installed. libfuse3-3 is already the newest version (3.14.0-10). libfuse3-3 set to manually installed. libjsoncpp26 is already the newest version (1.9.6-3). libjsoncpp26 set to manually installed. autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:14.2.0-1). cpp-x86-64-linux-gnu set to manually installed. python3-all is already the newest version (3.13.2-2). python3-all set to manually installed. libnuma1 is already the newest version (2.0.18-1+b1). libnuma1 set to manually installed. libngtcp2-crypto-gnutls-dev is already the newest version (1.11.0-1). libngtcp2-crypto-gnutls-dev set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.124-1). libdrm-amdgpu1 set to manually installed. libdpkg-perl is already the newest version (1.22.15). libdpkg-perl set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). libmagic1t64 is already the newest version (1:5.45-3+b1). libmagic1t64 set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-4). libgssapi-krb5-2 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-2). perl-modules-5.40 set to manually installed. python3-all-dev is already the newest version (3.13.2-2). python3-all-dev set to manually installed. libitm1 is already the newest version (14.2.0-17). libitm1 set to manually installed. libsystemd0 is already the newest version (257.3-1). grep is already the newest version (3.11-4). libnghttp2-14 is already the newest version (1.64.0-1). libnghttp2-14 set to manually installed. ocl-icd-libopencl1 is already the newest version (2.3.2-1+b2). ocl-icd-libopencl1 set to manually installed. libnl-3-200 is already the newest version (3.7.0-0.3+b1). libnl-3-200 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. g++-14-x86-64-linux-gnu is already the newest version (14.2.0-17). 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installed. libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. sed is already the newest version (4.9-2). dwz is already the newest version (0.15-1+b1). dwz set to manually installed. python3-minimal is already the newest version (3.13.2-2). python3-minimal set to manually installed. binutils is already the newest version (2.44-2). binutils set to manually installed. coreutils is already the newest version (9.5-1+b1). libsasl2-2 is already the newest version (2.1.28+dfsg1-9). libsasl2-2 set to manually installed. libsqlite3-dev is already the newest version (3.46.1-1). libsqlite3-dev set to manually installed. base-passwd is already the newest version (3.6.6). libxnvctrl0 is already the newest version (535.171.04-1+b2). libxnvctrl0 set to manually installed. libubsan1 is already the newest version (14.2.0-17). libubsan1 set to manually installed. gcc-14-base is already the newest version (14.2.0-17). libpsm-infinipath1 is already the newest 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netbase set to manually installed. libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. libcbor0.10 is already the newest version (0.10.2-2). libcbor0.10 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-1). libsqlite3-0 set to manually installed. libgfortran-14-dev is already the newest version (14.2.0-17). libgfortran-14-dev set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. bsdextrautils is already the newest version (2.40.4-5). bsdextrautils set to manually installed. libltdl-dev is already the newest version (2.5.4-4). libltdl-dev set to manually installed. cpp-14-x86-64-linux-gnu is already the newest version (14.2.0-17). cpp-14-x86-64-linux-gnu set to manually installed. libevent-dev is already the newest version (2.1.12-stable-10+b1). libevent-dev set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). 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newest version (1.21.3-4). libkadm5srv-mit12 set to manually installed. g++-14 is already the newest version (14.2.0-17). g++-14 set to manually installed. libc-bin is already the newest version (2.41-3). tar is already the newest version (1.35+dfsg-3.1). libgcc-14-dev is already the newest version (14.2.0-17). libgcc-14-dev set to manually installed. libhwloc15 is already the newest version (2.12.0-1). libhwloc15 set to manually installed. liblz4-1 is already the newest version (1.10.0-3). liblz4-1 set to manually installed. libdebconfclient0 is already the newest version (0.277). libsmartcols1 is already the newest version (2.40.4-5). libxau6 is already the newest version (1:1.0.11-1). libxau6 set to manually installed. libidn2-dev is already the newest version (2.3.7-2+b1). libidn2-dev set to manually installed. libevent-openssl-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-openssl-2.1-7t64 set to manually installed. xz-utils is already the newest version 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manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. ibverbs-providers is already the newest version (56.0-2). ibverbs-providers set to manually installed. libibmad5 is already the newest version (56.0-2). libibmad5 set to manually installed. base-files is already the newest version (13.6). libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. python3-dev is already the newest version (3.13.2-2). python3-dev set to manually installed. liblsan0 is already the newest version (14.2.0-17). liblsan0 set to manually installed. libgfortran5 is already the newest version (14.2.0-17). libgfortran5 set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libsemanage-common is already the newest version (3.8-1). libsemanage-common set to manually installed. libpsm2-2 is already the newest version (11.2.185-2.1). libpsm2-2 set to manually installed. libpython3-dev is already the newest version (3.13.2-2). libpython3-dev set to manually installed. libkrb5support0 is already the newest version (1.21.3-4). libkrb5support0 set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-2.1-7t64 set to manually installed. libnl-route-3-200 is already the newest version (3.7.0-0.3+b1). libnl-route-3-200 set to manually installed. libngtcp2-16 is already the newest version (1.11.0-1). libngtcp2-16 set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-1). libxdmcp6 set to manually installed. libpam-modules is already the newest version (1.7.0-3). libseccomp2 is already the newest version (2.5.5-2+b1). libseccomp2 set to manually installed. libpmix-dev is already the newest version (5.0.6-4). libpmix-dev set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libgnutls28-dev is already the newest version (3.8.9-2). libgnutls28-dev set to manually installed. libcurl3t64-gnutls is already the newest version (8.12.1-3). libcurl3t64-gnutls set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. diffutils is already the newest version (1:3.10-2). bash is already the newest version (5.2.37-1.1). chrpath is already the newest version (0.18-1). chrpath set to manually installed. openmpi-bin is already the newest version (5.0.7-1). openmpi-bin set to manually installed. libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. autoconf is already the newest version (2.72-3). autoconf set to manually installed. libtool is already the newest version (2.5.4-4). libtool set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libpam0g is already the newest version (1.7.0-3). gcc-14 is already the newest version (14.2.0-17). gcc-14 set to manually installed. libc-dev-bin is already the newest version (2.41-3). libc-dev-bin set to manually installed. libkadm5clnt-mit12 is already the newest version (1.21.3-4). libkadm5clnt-mit12 set to manually installed. libcurl4-gnutls-dev is already the newest version (8.12.1-3). libcurl4-gnutls-dev set to manually installed. libnl-route-3-dev is already the newest version (3.7.0-0.3+b1). libnl-route-3-dev set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). cmake is already the newest version (3.31.6-1). cmake set to manually installed. libnuma-dev is already the newest version (2.0.18-1+b1). libnuma-dev set to manually installed. libexpat1 is already the newest version (2.6.4-1). libexpat1 set to manually installed. libbinutils is already the newest version (2.44-2). libbinutils set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libpam-runtime is already the newest version (1.7.0-3). libblkid1 is already the newest version (2.40.4-5). libevent-extra-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-extra-2.1-7t64 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. libnghttp3-9 is already the newest version (1.8.0-1). libnghttp3-9 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b1). libxcb1 set to manually installed. libctf-nobfd0 is already the newest version (2.44-2). libctf-nobfd0 set to manually installed. debianutils is already the newest version (5.21). perl is already the newest version (5.40.1-2). perl set to manually installed. libncursesw6 is already the newest version (6.5+20250216-1). libncursesw6 set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. dpkg-dev is already the newest version (1.22.15). dpkg-dev set to manually installed. libibverbs1 is already the newest version (56.0-2). libibverbs1 set to manually installed. libsemanage2 is already the newest version (3.8-1+b1). libsemanage2 set to manually installed. libopenmpi-dev is already the newest version (5.0.7-1). libopenmpi-dev set to manually installed. libselinux1 is already the newest version (3.8-4). dash is already the newest version (0.5.12-12). libtinfo6 is already the newest version (6.5+20250216-1). gcc-14-x86-64-linux-gnu is already the newest version (14.2.0-17). gcc-14-x86-64-linux-gnu set to manually installed. libkdb5-10t64 is already the newest version (1.21.3-4). libkdb5-10t64 set to manually installed. automake is already the newest version (1:1.17-3). automake set to manually installed. libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3). libjs-underscore set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.11.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libuuid1 is already the newest version (2.40.4-5). mawk is already the newest version (1.3.4.20250131-1). sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. python3.13 is already the newest version (3.13.2-1). python3.13 set to manually installed. libpsl-dev is already the newest version (0.21.2-1.1+b1). libpsl-dev set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV (Reading database ... 24540 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.8Tcx44nRIV... I: success in 47.4045 seconds Downloading dependency 260 of 310: diffutils:amd64=1:3.10-2 Downloading dependency 261 of 310: bash:amd64=5.2.37-1.1 Downloading dependency 262 of 310: chrpath:amd64=0.18-1 Downloading dependency 263 of 310: openmpi-bin:amd64=5.0.7-1 Downloading dependency 264 of 310: libhogweed6t64:amd64=3.10.1-1 Downloading dependency 265 of 310: autoconf:amd64=2.72-3 Downloading dependency 266 of 310: libtool:amd64=2.5.4-4 Downloading dependency 267 of 310: zlib1g:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 268 of 310: libjansson4:amd64=2.14-2+b3 Downloading dependency 269 of 310: libpam0g:amd64=1.7.0-3 Downloading dependency 270 of 310: gcc-14:amd64=14.2.0-17 Downloading dependency 271 of 310: libc-dev-bin:amd64=2.41-3 Downloading dependency 272 of 310: libkadm5clnt-mit12:amd64=1.21.3-4 Downloading dependency 273 of 310: libcurl4-gnutls-dev:amd64=8.12.1-3 Downloading dependency 274 of 310: libnl-route-3-dev:amd64=3.7.0-0.3+b1 Downloading dependency 275 of 310: libcap-ng0:amd64=0.8.5-4+b1 Downloading dependency 276 of 310: gettext-base:amd64=0.23.1-1 Downloading dependency 277 of 310: libdb5.3t64:amd64=5.3.28+dfsg2-9 Downloading dependency 278 of 310: cmake:amd64=3.31.6-1 Downloading dependency 279 of 310: libnuma-dev:amd64=2.0.18-1+b1 Downloading dependency 280 of 310: libexpat1:amd64=2.6.4-1 Downloading dependency 281 of 310: libbinutils:amd64=2.44-2 Downloading dependency 282 of 310: libisl23:amd64=0.27-1 Downloading dependency 283 of 310: libpam-runtime:amd64=1.7.0-3 Downloading dependency 284 of 310: libblkid1:amd64=2.40.4-5 Downloading dependency 285 of 310: libevent-extra-2.1-7t64:amd64=2.1.12-stable-10+b1 Downloading dependency 286 of 310: libbrotli1:amd64=1.1.0-2+b7 Downloading dependency 287 of 310: libnghttp3-9:amd64=1.8.0-1 Downloading dependency 288 of 310: libxcb1:amd64=1.17.0-2+b1 Downloading dependency 289 of 310: libctf-nobfd0:amd64=2.44-2 Downloading dependency 290 of 310: debianutils:amd64=5.21 Downloading dependency 291 of 310: perl:amd64=5.40.1-2 Downloading dependency 292 of 310: libncursesw6:amd64=6.5+20250216-1 Downloading dependency 293 of 310: g++:amd64=4:14.2.0-1 Downloading dependency 294 of 310: dpkg-dev:amd64=1.22.15 Downloading dependency 295 of 310: libibverbs1:amd64=56.0-2 Downloading dependency 296 of 310: libsemanage2:amd64=3.8-1+b1 Downloading dependency 297 of 310: libopenmpi-dev:amd64=5.0.7-1 Downloading dependency 298 of 310: libselinux1:amd64=3.8-4 Downloading dependency 299 of 310: dash:amd64=0.5.12-12 Downloading dependency 300 of 310: libtinfo6:amd64=6.5+20250216-1 Downloading dependency 301 of 310: gcc-14-x86-64-linux-gnu:amd64=14.2.0-17 Downloading dependency 302 of 310: libkdb5-10t64:amd64=1.21.3-4 Downloading dependency 303 of 310: automake:amd64=1:1.17-3 Downloading dependency 304 of 310: libjs-underscore:amd64=1.13.4~dfsg+~1.11.4-3 Downloading dependency 305 of 310: libngtcp2-crypto-gnutls8:amd64=1.11.0-1 Downloading dependency 306 of 310: libuuid1:amd64=2.40.4-5 Downloading dependency 307 of 310: mawk:amd64=1.3.4.20250131-1 Downloading dependency 308 of 310: sensible-utils:amd64=0.0.24 Downloading dependency 309 of 310: python3.13:amd64=3.13.2-1 Downloading dependency 310 of 310: libpsl-dev:amd64=0.21.2-1.1+b1 env --chdir=/srv/rebuilderd/tmp/rebuilderdY8O0VF/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1741174992 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildqotKTe/debrebuild.sbuildrc.CRauttQGA99P sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildqotKTe/debrebuild.tar.PR7BXhuKviE4 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=hyphy-2.5.69+dfsg /srv/rebuilderd/tmp/rebuilderdY8O0VF/inputs/hyphy_2.5.69+dfsg-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3 (07 June 2025) on osuosl4-amd64.reproducible.osuosl.org +==============================================================================+ | hyphy 2.5.69+dfsg-1 (amd64) Mon, 23 Jun 2025 09:37:56 +0000 | +==============================================================================+ Package: hyphy Version: 2.5.69+dfsg-1 Source Version: 2.5.69+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildqotKTe/debrebuild.tar.PR7BXhuKviE4 to /srv/rebuilderd/tmp/tmp.sbuild.Ie38ZMqemJ... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Mon, 23 Jun 2025 09:38:04 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdY8O0VF/inputs/hyphy_2.5.69+dfsg-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdY8O0VF/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 23 Jun 2025 09:38:06 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev, pkgconf, libpython3-all-dev, python3-all-dev:any, chrpath, build-essential Filtered Build-Depends: debhelper-compat (= 13), cmake, mpi-default-dev, libcurl4-gnutls-dev, libssl-dev, libsqlite3-dev, pkgconf, libpython3-all-dev, python3-all-dev:any, chrpath, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-rkvJaK/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Mon, 23 Jun 2025 09:38:10 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Mon, 23 Jun 2025 09:38:10 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.31-1 (2025-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.44-2 dpkg-dev_1.22.15 g++-14_14.2.0-17 gcc-14_14.2.0-17 libc6-dev_2.41-3 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 linux-libc-dev_6.12.17-1 Package versions: adduser_3.144 autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1.1 binutils_2.44-2 binutils-common_2.44-2 binutils-x86-64-linux-gnu_2.44-2 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 chrpath_0.18-1 cmake_3.31.6-1 cmake-data_3.31.6-1 comerr-dev_2.1-1.47.2-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-17 cpp-14-x86-64-linux-gnu_14.2.0-17 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.89 debhelper_13.24.1 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 dpkg_1.22.15 dpkg-dev_1.22.15 dwz_0.15-1+b1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-17 g++-14-x86-64-linux-gnu_14.2.0-17 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-17 gcc-14-base_14.2.0-17 gcc-14-x86-64-linux-gnu_14.2.0-17 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 gfortran-14_14.2.0-17 gfortran-14-x86-64-linux-gnu_14.2.0-17 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 ibverbs-providers_56.0-2 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-4 libacl1_2.3.2-2+b1 libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b2 libamdhip64-5_5.7.1-5+b1 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-1.1 libasan8_14.2.0-17 libatomic1_14.2.0-17 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-2 libblkid1_2.40.4-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-3 libc-dev-bin_2.41-3 libc6_2.41-3 libc6-dev_2.41-3 libcap-ng0_0.8.5-4+b1 libcap2_1:2.73-4 libcbor0.10_0.10.2-2 libcc1-0_14.2.0-17 libcom-err2_1.47.2-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-2 libctf0_2.44-2 libcurl3t64-gnutls_8.12.1-3 libcurl4-gnutls-dev_8.12.1-3 libcurl4t64_8.12.1-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdpkg-perl_1.22.15 libdrm-amdgpu1_2.4.124-1 libdrm-common_2.4.124-1 libdrm2_2.4.124-1 libedit2_3.1-20250104-1 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libevent-core-2.1-7t64_2.1.12-stable-10+b1 libevent-dev_2.1.12-stable-10+b1 libevent-extra-2.1-7t64_2.1.12-stable-10+b1 libevent-openssl-2.1-7t64_2.1.12-stable-10+b1 libevent-pthreads-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.6.4-1 libexpat1-dev_2.6.4-1 libfabric1_1.17.0-3.1 libffi8_3.4.7-1 libfido2-1_1.15.0-1+b1 libfile-stripnondeterminism-perl_1.14.1-2 libfuse3-3_3.14.0-10 libgcc-14-dev_14.2.0-17 libgcc-s1_14.2.0-17 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran-14-dev_14.2.0-17 libgfortran5_14.2.0-17 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-17 libgprofng0_2.44-2 libgssapi-krb5-2_1.21.3-4 libgssrpc4t64_1.21.3-4 libhogweed6t64_3.10.1-1 libhsa-runtime64-1_6.1.2-3 libhsakmt1_6.2.4+ds-1 libhwasan0_14.2.0-17 libhwloc-dev_2.12.0-1 libhwloc-plugins_2.12.0-1 libhwloc15_2.12.0-1 libibmad5_56.0-2 libibumad3_56.0-2 libibverbs-dev_56.0-2 libibverbs1_56.0-2 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libidn2-dev_2.3.7-2+b1 libisl23_0.27-1 libitm1_14.2.0-17 libjansson4_2.14-2+b3 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_8.1.3-5 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjsoncpp26_1.9.6-3 libk5crypto3_1.21.3-4 libkadm5clnt-mit12_1.21.3-4 libkadm5srv-mit12_1.21.3-4 libkdb5-10t64_1.21.3-4 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-4 libkrb5-dev_1.21.3-4 libkrb5support0_1.21.3-4 libldap-dev_2.6.9+dfsg-1 libldap2_2.6.9+dfsg-1 libllvm17t64_1:17.0.6-21 liblsan0_14.2.0-17 libltdl-dev_2.5.4-4 libltdl7_2.5.4-4 liblz4-1_1.10.0-3 liblzma5_5.6.4-1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libmunge2_0.5.16-1 libncursesw6_6.5+20250216-1 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls-dev_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libngtcp2-dev_1.11.0-1 libnl-3-200_3.7.0-0.3+b1 libnl-3-dev_3.7.0-0.3+b1 libnl-route-3-200_3.7.0-0.3+b1 libnl-route-3-dev_3.7.0-0.3+b1 libnuma-dev_2.0.18-1+b1 libnuma1_2.0.18-1+b1 libopenmpi-dev_5.0.7-1 libopenmpi40_5.0.7-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpciaccess0_0.17-3+b3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpmix-dev_5.0.6-4 libpmix2t64_5.0.6-4 libproc2-0_2:4.0.4-7 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpsm-infinipath1_3.3+20.604758e7-6.3 libpsm2-2_11.2.185-2.1 libpython3-all-dev_3.13.2-2 libpython3-dev_3.13.2-2 libpython3-stdlib_3.13.2-2 libpython3.13_3.13.2-1 libpython3.13-dev_3.13.2-1 libpython3.13-minimal_3.13.2-1 libpython3.13-stdlib_3.13.2-1 libquadmath0_14.2.0-17 librdmacm1t64_56.0-2 libreadline8t64_8.2-6 librhash1_1.4.5-1 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.5.5-2+b1 libselinux1_3.8-4 libsemanage-common_3.8-1 libsemanage2_3.8-1+b1 libsepol2_3.8-1 libsframe1_2.44-2 libsmartcols1_2.40.4-5 libsqlite3-0_3.46.1-1 libsqlite3-dev_3.46.1-1 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.4.1-1 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 libsystemd0_257.3-1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-1 libtool_2.5.4-4 libtsan2_14.2.0-17 libubsan1_14.2.0-17 libuchardet0_0.0.8-1+b2 libucx0_1.18.1+ds-1 libudev1_257.3-1 libunbound8_1.22.0-1+b1 libunistring5_1.3-1 libuuid1_2.40.4-5 libuv1t64_1.50.0-2 libx11-6_2:1.8.10-2 libx11-data_2:1.8.10-2 libxau6_1:1.0.11-1 libxcb1_1.17.0-2+b1 libxdmcp6_1:1.1.5-1 libxext6_2:1.3.4-1+b3 libxml2_2.12.7+dfsg+really2.9.14-0.2+b2 libxnvctrl0_535.171.04-1+b2 libxxhash0_0.8.3-2 libz3-4_4.13.3-1 libzstd-dev_1.5.6+dfsg-2 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.17-1 login.defs_1:4.17.3-1 m4_1.4.19-5 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_12.0.0 mpi-default-dev_1.18 ncurses-base_6.5+20250216-1 ncurses-bin_6.5+20250216-1 netbase_6.4 nettle-dev_3.10.1-1 ocl-icd-libopencl1_2.3.2-1+b2 openmpi-bin_5.0.7-1 openmpi-common_5.0.7-1 openssh-client_1:9.9p2-1 openssl-provider-legacy_3.4.1-1 passwd_1:4.17.3-1 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-7 python3_3.13.2-2 python3-all_3.13.2-2 python3-all-dev_3.13.2-2 python3-dev_3.13.2-2 python3-minimal_3.13.2-2 python3.13_3.13.2-1 python3.13-dev_3.13.2-1 python3.13-minimal_3.13.2-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.14-3 tar_1.35+dfsg-3.1 tzdata_2025a-2 util-linux_2.40.4-5 xz-utils_5.6.4-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 23 Jun 2025 09:38:10 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hyphy Binary: hyphy-pt, hyphy-mpi, hyphy-common Architecture: any all Version: 2.5.69+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier , Nilesh Patra Homepage: https://hyphy.org/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/hyphy Vcs-Git: https://salsa.debian.org/med-team/hyphy.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev, pkgconf, libpython3-all-dev, python3-all-dev:any, chrpath Package-List: hyphy-common deb science optional arch=all hyphy-mpi deb science optional arch=any hyphy-pt deb science optional arch=any Checksums-Sha1: a491b54f1ab7005e80328e66cf686181336df66a 2633436 hyphy_2.5.69+dfsg.orig.tar.xz 49d63112fc857ef658e02c82e03e3a1c065df037 17452 hyphy_2.5.69+dfsg-1.debian.tar.xz Checksums-Sha256: 34ef5370a72a08a221cf28a88f7bed1615b42594baf00a1813c7d15b63aa6e44 2633436 hyphy_2.5.69+dfsg.orig.tar.xz 3b879a7e775266fab981d57100407cad3ae6d346f66d3b69be56b385488ea2ba 17452 hyphy_2.5.69+dfsg-1.debian.tar.xz Files: 7a1e7afbab1b40d2f140920e04e51067 2633436 hyphy_2.5.69+dfsg.orig.tar.xz 0bd4a3fe59e99932b5df9e9818f39634 17452 hyphy_2.5.69+dfsg-1.debian.tar.xz Dgit: 269a1243915c833e4db3febfbf3ea63c02cea2be debian archive/debian/2.5.69+dfsg-1 https://git.dgit.debian.org/hyphy -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmfIRcUUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr2NRAAlYkkqi3dPxbZtiMymQk4kyISHpjW Sc+AyiOCVtAS2h7wJKnzuFZiLXOTIEcgobVWk5kr0FLlieota2X2F0TZgdcfMkXl 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debian/patches/series dpkg-source: info: applying use_debian_sqlite.patch dpkg-source: info: applying rm_arch_specific_flags.patch dpkg-source: info: applying set-zlib-after-setting-default-libs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1741174992 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.5.69+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' dh_auto_clean --builddirectory obj-avx dh_auto_clean --builddirectory obj-sse3 dh_auto_clean make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' dh_auto_configure -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_SSE4_EXTENSIONS -- Performing Test HAVE_SSE4_EXTENSIONS - Success -- Performing Test HAVE_NEON_EXTENSIONS -- Performing Test HAVE_NEON_EXTENSIONS - Failed Set compiler flags to -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g Set linker flags to -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -- Could NOT find BLAS (missing: BLAS_LIBRARIES) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.12.1") /usr/lib/x86_64-linux-gnu/libcurl.so Node not installed; API documentation will not be generated -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'sqlite3' -- Found sqlite3, version 3.46.1 -- Found SQLITE3: /usr/lib/x86_64-linux-gnu/libsqlite3.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.9") /usr/share/hyphy -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -fopenmp CMake Warning (dev) at CMakeLists.txt:698 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:701 (makeLink) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (3.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX NOSSE3 -- Build files have been written to: /build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu dh_auto_configure --builddirectory obj-avx -- -DINSTALL_PREFIX=/usr -DNOAVX=OFF -DNOSSE3=OFF cd obj-avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=OFF -DNOSSE3=OFF .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_AVX_EXTENSIONS -- Performing Test HAVE_AVX_EXTENSIONS - Failed -- Performing Test HAVE_SSE4_EXTENSIONS -- Performing Test HAVE_SSE4_EXTENSIONS - Success -- Performing Test HAVE_NEON_EXTENSIONS -- Performing Test HAVE_NEON_EXTENSIONS - Failed Set compiler flags to -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g Set linker flags to -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -- Could NOT find BLAS (missing: BLAS_LIBRARIES) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.12.1") /usr/lib/x86_64-linux-gnu/libcurl.so Node not installed; API documentation will not be generated -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'sqlite3' -- Found sqlite3, version 3.46.1 -- Found SQLITE3: /usr/lib/x86_64-linux-gnu/libsqlite3.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.9") /usr/share/hyphy -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -fopenmp CMake Warning (dev) at CMakeLists.txt:698 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:701 (makeLink) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (5.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX NOSSE3 -- Build files have been written to: /build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx dh_auto_configure --builddirectory obj-sse3 -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=OFF cd obj-sse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=OFF .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_SSE4_EXTENSIONS -- Performing Test HAVE_SSE4_EXTENSIONS - Success -- Performing Test HAVE_NEON_EXTENSIONS -- Performing Test HAVE_NEON_EXTENSIONS - Failed Set compiler flags to -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g Set linker flags to -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -- Could NOT find BLAS (missing: BLAS_LIBRARIES) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.12.1") /usr/lib/x86_64-linux-gnu/libcurl.so Node not installed; API documentation will not be generated -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'sqlite3' -- Found sqlite3, version 3.46.1 -- Found SQLITE3: /usr/lib/x86_64-linux-gnu/libsqlite3.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.9") /usr/share/hyphy -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -fopenmp CMake Warning (dev) at CMakeLists.txt:698 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:701 (makeLink) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (4.8s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX NOSSE3 -- Build files have been written to: /build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3 make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' dh_auto_build -- MP MPI cd obj-x86_64-linux-gnu && make -j6 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP make[3]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu/CMakeFiles 20 make -f CMakeFiles/Makefile2 CMakeFiles/MP.dir/all make[4]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/depend make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hyphy-2.5.69+dfsg /build/reproducible-path/hyphy-2.5.69+dfsg /build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu/CMakeFiles/hyphy.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/build make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o [ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o [ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o [ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o [ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -MF CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -c 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/batchlanruntime.cpp.o -MF CMakeFiles/hyphy.dir/src/core/batchlanruntime.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/batchlanruntime.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/batchlanruntime.cpp [ 20%] Building CXX object CMakeFiles/hyphy.dir/src/core/calcnode.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/calcnode.cpp.o -MF CMakeFiles/hyphy.dir/src/core/calcnode.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/calcnode.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/calcnode.cpp [ 20%] Building CXX object CMakeFiles/hyphy.dir/src/core/category.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/mathobj.cpp.o -MF CMakeFiles/hyphy.dir/src/core/mathobj.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/mathobj.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/mathobj.cpp [ 45%] Building CXX object CMakeFiles/hyphy.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/simplelist.cpp.o -MF CMakeFiles/hyphy.dir/src/core/simplelist.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/simplelist.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/simplelist.cpp [ 60%] Building CXX object CMakeFiles/hyphy.dir/src/core/site.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/string_file_wrapper.cpp.o -MF CMakeFiles/hyphy.dir/src/core/string_file_wrapper.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/string_file_wrapper.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_file_wrapper.cpp [ 65%] Building CXX object CMakeFiles/hyphy.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/strings.cpp.o -MF CMakeFiles/hyphy.dir/src/core/strings.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/strings.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/strings.cpp [ 70%] Building CXX object 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-D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/tree_iterator.cpp.o -MF CMakeFiles/hyphy.dir/src/core/tree_iterator.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/tree_iterator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree_iterator.cpp [ 75%] Building CXX object CMakeFiles/hyphy.dir/src/core/trie.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o -MF CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o.d -o CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib/regex.cpp [ 95%] Building CXX object CMakeFiles/hyphy.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include 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CMakeFiles/hyphy.dir/src/new/bayesgraph.cpp.o CMakeFiles/hyphy.dir/src/new/bayesgraph2.cpp.o CMakeFiles/hyphy.dir/src/new/bgm.cpp.o CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o CMakeFiles/hyphy.dir/src/new/scfg.cpp.o CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/hyphy.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o CMakeFiles/hyphy.dir/src/mains/unix.cpp.o -o hyphy -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a mklink HYPHYMP -> hyphy ln -sf hyphy HYPHYMP make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' [100%] Built target hyphy make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/depend make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/avllist.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" 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-Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/_hyExecutionContext.cpp [ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o [ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/associative_list.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/calcnode.cpp [ 20%] Building CXX object 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-D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/constant.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter_numeric.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/formula_parsing_context.cpp [ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o /usr/bin/c++ 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CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/fstring.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/hbl_env.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o -c 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefunc2.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefuncocl.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/list.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o 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-Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/matrix.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/nexus.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o -c 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/parser.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/parser2.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/polynoml.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/simplelist.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/site.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/stack.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_buffer.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_file_wrapper.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/strings.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/topology.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree_iterator.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/scfg.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ 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CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -o HYPHYMPI -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib: -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' [100%] Built target HYPHYMPI make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/depend make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' cd 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-ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/matrix.cpp.o -MF CMakeFiles/hyphy.dir/src/core/matrix.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/matrix.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/matrix.cpp [ 50%] Building CXX object CMakeFiles/hyphy.dir/src/core/matrix_mult.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/matrix_mult.cpp.o -MF CMakeFiles/hyphy.dir/src/core/matrix_mult.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/matrix_mult.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/matrix_mult.cpp [ 50%] Building CXX object CMakeFiles/hyphy.dir/src/core/nexus.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/operation.cpp.o -MF CMakeFiles/hyphy.dir/src/core/operation.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/operation.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/operation.cpp [ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/parser.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/parser.cpp.o -MF CMakeFiles/hyphy.dir/src/core/parser.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/parser.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/parser.cpp [ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/parser2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/parser2.cpp.o -MF CMakeFiles/hyphy.dir/src/core/parser2.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/parser2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/parser2.cpp [ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/polynoml.cpp.o 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/strings.cpp.o -MF CMakeFiles/hyphy.dir/src/core/strings.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/strings.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/strings.cpp [ 70%] Building CXX object CMakeFiles/hyphy.dir/src/core/time_difference.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/time_difference.cpp.o -MF CMakeFiles/hyphy.dir/src/core/time_difference.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/time_difference.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/time_difference.cpp [ 70%] Building CXX object CMakeFiles/hyphy.dir/src/core/topology.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ 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Building CXX object CMakeFiles/hyphy.dir/src/core/translation_table.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/tree_evaluator.cpp.o -MF CMakeFiles/hyphy.dir/src/core/tree_evaluator.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/tree_evaluator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree_evaluator.cpp [ 75%] Building CXX object CMakeFiles/hyphy.dir/src/core/tree_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ 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CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/hyphy.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o CMakeFiles/hyphy.dir/src/mains/unix.cpp.o -o hyphy -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a mklink HYPHYMP -> hyphy ln -sf hyphy HYPHYMP make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx' [100%] Built target hyphy make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/depend make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx' cd /build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hyphy-2.5.69+dfsg /build/reproducible-path/hyphy-2.5.69+dfsg /build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx /build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/batchlan2.cpp [ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/calcnode.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/category.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/constant.cpp [ 25%] Building CXX 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-D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter_numeric.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ 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-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/fstring.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/global_object_lists.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/hyFile.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefunc.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefunc2.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/list.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/mathobj.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/matrix.cpp [ 50%] Building CXX object 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/ntuplestorage.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/operation.cpp [ 55%] Building CXX object 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-Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/parser2.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/polynoml.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/simplelist.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/site.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/stack.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_buffer.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_file_wrapper.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/strings.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/translation_table.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree_iterator.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/trie.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/trie_iterator.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o 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-D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/variablecontainer.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/vector.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bayesgraph.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ 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[ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o -MF 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/utils/hyphyunixutils.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o -MF CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter_numeric.cpp [ 25%] Building CXX object CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o -MF CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o -c 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -MF CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/formula_parsing_context.cpp [ 30%] Building CXX object CMakeFiles/hyphy.dir/src/core/fstring.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/fstring.cpp.o -MF CMakeFiles/hyphy.dir/src/core/fstring.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/fstring.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/fstring.cpp [ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ 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35%] Building CXX object CMakeFiles/hyphy.dir/src/core/global_things.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o -MF CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/hbl_env.cpp [ 40%] Building CXX object CMakeFiles/hyphy.dir/src/core/hyFile.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/hyFile.cpp.o -MF CMakeFiles/hyphy.dir/src/core/hyFile.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/hyFile.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/hyFile.cpp [ 40%] Building CXX object CMakeFiles/hyphy.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/mathobj.cpp.o -MF CMakeFiles/hyphy.dir/src/core/mathobj.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/mathobj.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/mathobj.cpp [ 45%] Building CXX object CMakeFiles/hyphy.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/matrix.cpp.o -MF CMakeFiles/hyphy.dir/src/core/matrix.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/matrix.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/matrix.cpp [ 50%] Building CXX object CMakeFiles/hyphy.dir/src/core/matrix_mult.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/ntuplestorage.cpp.o -MF CMakeFiles/hyphy.dir/src/core/ntuplestorage.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/ntuplestorage.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/ntuplestorage.cpp [ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/operation.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/operation.cpp.o -MF CMakeFiles/hyphy.dir/src/core/operation.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/operation.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/operation.cpp [ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/parser.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/parser.cpp.o -MF CMakeFiles/hyphy.dir/src/core/parser.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/parser.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/parser.cpp [ 55%] Building CXX object 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o -MF CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o.d -o CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bgm2.cpp [ 90%] Building CXX object CMakeFiles/hyphy.dir/src/new/scfg.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" 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Building CXX object CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o -MF 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CMakeFiles/hyphy.dir/src/new/bgm.cpp.o CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o CMakeFiles/hyphy.dir/src/new/scfg.cpp.o CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/hyphy.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o CMakeFiles/hyphy.dir/src/mains/unix.cpp.o -o hyphy -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a mklink HYPHYMP -> hyphy ln -sf hyphy HYPHYMP make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' [100%] Built target hyphy make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/depend make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' cd /build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hyphy-2.5.69+dfsg /build/reproducible-path/hyphy-2.5.69+dfsg 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-D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/alignment.cpp [ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/_hyExecutionContext.cpp [ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o [ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o [ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o [ 5%] Building CXX object 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/avllistx_iterator.cpp [ 10%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/avllistxl.cpp [ 10%] Building CXX object 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CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/avllistxl_iterator.cpp [ 10%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/batchlan2.cpp [ 15%] Building CXX object 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/calcnode.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/category.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/constant.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter_numeric.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/formula.cpp [ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/formula_parsing_context.cpp [ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/fstring.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/global_object_lists.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/global_things.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/hbl_env.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/hyFile.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefunc.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefunc2.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefuncocl.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/list.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/mathobj.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/matrix.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/matrix_mult.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/nexus.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/ntuplestorage.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/operation.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/parser.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/parser2.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/polynoml.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/simplelist.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/site.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/stack.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_buffer.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_file_wrapper.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/time_difference.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/topology.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o -c 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree_evaluator.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree_iterator.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/trie.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/variable.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/variablecontainer.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/vector.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bayesgraph.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bayesgraph2.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bgm.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bgm2.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/scfg.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/utils/hyphyunixutils.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib/mersenne_twister.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib/regex.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/mains/unix.cpp [100%] Linking CXX executable HYPHYMPI /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMPI.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -Wl,--dependency-file=CMakeFiles/HYPHYMPI.dir/link.d 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CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -o HYPHYMPI -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib: -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' [100%] Built target HYPHYMPI make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/depend make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' cd /build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hyphy-2.5.69+dfsg /build/reproducible-path/hyphy-2.5.69+dfsg /build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3 /build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3 /build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3/CMakeFiles/MPI.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/build make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' make[5]: Nothing to be done for 'CMakeFiles/MPI.dir/build'. make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' [100%] Built target MPI make[4]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' make[2]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' set -e ; for SIMD in avx sse3 ; do \ if lscpu | grep -q ${SIMD} ; then \ find "obj-${SIMD}/" \ -not -path "*/CMakeFiles/*" \ -type f,l \ -executable \ -exec cp -v '{}' . \; && \ ./run_unit_tests.sh ; \ fi ; \ done 'obj-sse3/HYPHYMPI' -> './HYPHYMPI' 'obj-sse3/HYPHYMP' -> './HYPHYMP' 'obj-sse3/hyphy' -> './hyphy' ./tests/hbltests/UnitTests/HBLCommands/Abs.bf ./tests/hbltests/UnitTests/HBLCommands/Add.bf ./tests/hbltests/UnitTests/HBLCommands/Ampersand.bf ./tests/hbltests/UnitTests/HBLCommands/Arctan.bf ./tests/hbltests/UnitTests/HBLCommands/BayesianGraphicalModel.bf ./tests/hbltests/UnitTests/HBLCommands/Beta.bf ./tests/hbltests/UnitTests/HBLCommands/BranchLength.bf ./tests/hbltests/UnitTests/HBLCommands/Branchcount.bf 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./tests/hbltests/UnitTests/HBLCommands/DoubleVerticalBar.bf ./tests/hbltests/UnitTests/HBLCommands/Eigensystem.bf ./tests/hbltests/UnitTests/HBLCommands/Erf.bf ./tests/hbltests/UnitTests/HBLCommands/Eval.bf ./tests/hbltests/UnitTests/HBLCommands/ExclamationPoint.bf ./tests/hbltests/UnitTests/HBLCommands/ExclamationPointEquals.bf ./tests/hbltests/UnitTests/HBLCommands/ExecuteAFile.bf ./tests/hbltests/UnitTests/HBLCommands/ExecuteCommands.bf ./tests/hbltests/UnitTests/HBLCommands/Exp.bf ./tests/hbltests/UnitTests/HBLCommands/Export.bf ./tests/hbltests/UnitTests/HBLCommands/Ffunction.bf ./tests/hbltests/UnitTests/HBLCommands/FindRoot.bf ./tests/hbltests/UnitTests/HBLCommands/For.bf ./tests/hbltests/UnitTests/HBLCommands/Format.bf ./tests/hbltests/UnitTests/HBLCommands/Function.bf ./tests/hbltests/UnitTests/HBLCommands/Gamma.bf ./tests/hbltests/UnitTests/HBLCommands/GammaDist.bf ./tests/hbltests/UnitTests/HBLCommands/GetDataInfo.bf ./tests/hbltests/UnitTests/HBLCommands/GetInformation.bf ./tests/hbltests/UnitTests/HBLCommands/GetString.bf ./tests/hbltests/UnitTests/HBLCommands/Greaterthan.bf ./tests/hbltests/UnitTests/HBLCommands/Greaterthanorequalto.bf ./tests/hbltests/UnitTests/HBLCommands/HarvestFrequencies.bf ./tests/hbltests/UnitTests/HBLCommands/IBeta.bf ./tests/hbltests/UnitTests/HBLCommands/IGamma.bf ./tests/hbltests/UnitTests/HBLCommands/If.bf ./tests/hbltests/UnitTests/HBLCommands/Integrate.bf ./tests/hbltests/UnitTests/HBLCommands/Inverse.bf ./tests/hbltests/UnitTests/HBLCommands/JSON.bf ./tests/hbltests/UnitTests/HBLCommands/Join.bf ./tests/hbltests/UnitTests/HBLCommands/LUDecompose.bf ./tests/hbltests/UnitTests/HBLCommands/LUSolve.bf ./tests/hbltests/UnitTests/HBLCommands/Lessthan.bf ./tests/hbltests/UnitTests/HBLCommands/Lessthanorequalto.bf ./tests/hbltests/UnitTests/HBLCommands/LnGamma.bf ./tests/hbltests/UnitTests/HBLCommands/LoadFunctionLibrary.bf ./tests/hbltests/UnitTests/HBLCommands/Log.bf ./tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf ./tests/hbltests/UnitTests/HBLCommands/Max.bf ./tests/hbltests/UnitTests/HBLCommands/Min.bf ./tests/hbltests/UnitTests/HBLCommands/Model.bf ./tests/hbltests/UnitTests/HBLCommands/Percentsign.bf ./tests/hbltests/UnitTests/HBLCommands/Random.bf ./tests/hbltests/UnitTests/HBLCommands/ReplicateConstraint.bf ./tests/hbltests/UnitTests/HBLCommands/RequireVersion.bf ./tests/hbltests/UnitTests/HBLCommands/RerootTree.bf ./tests/hbltests/UnitTests/HBLCommands/Return.bf ./tests/hbltests/UnitTests/HBLCommands/Rows.bf ./tests/hbltests/UnitTests/HBLCommands/Simplex.bf ./tests/hbltests/UnitTests/HBLCommands/Simplify.bf ./tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf ./tests/hbltests/UnitTests/HBLCommands/Sin.bf ./tests/hbltests/UnitTests/HBLCommands/Sqrt.bf ./tests/hbltests/UnitTests/HBLCommands/Sscanf.bf ./tests/hbltests/UnitTests/HBLCommands/Subtract.bf ./tests/hbltests/UnitTests/HBLCommands/Tan.bf ./tests/hbltests/UnitTests/HBLCommands/Time.bf ./tests/hbltests/UnitTests/HBLCommands/TipCount.bf ./tests/hbltests/UnitTests/HBLCommands/TipName.bf ./tests/hbltests/UnitTests/HBLCommands/Topology.bf ./tests/hbltests/UnitTests/HBLCommands/Transpose.bf ./tests/hbltests/UnitTests/HBLCommands/Tree.bf ./tests/hbltests/UnitTests/HBLCommands/Type.bf ./tests/hbltests/UnitTests/HBLCommands/While.bf ./tests/hbltests/UnitTests/HBLCommands/ZCDF.bf ./tests/hbltests/UnitTests/HBLCommands/assert.bf ./tests/hbltests/UnitTests/HBLCommands/break.bf ./tests/hbltests/UnitTests/HBLCommands/fscanf_fprintf.bf ./tests/hbltests/UnitTests/HBLCommands/include.bf ./tests/hbltests/UnitTests/HBLCommands/lfunction.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_iofunctions.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_math.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf ./tests/hbltests/UnitTests/HBLCommands/namespace.bf \n\n------------------------ALL TEST PASSED------------------------------------\n find "obj-x86_64-linux-gnu/" \ -not -path "*/CMakeFiles/*" \ -type f,l \ -executable \ -exec cp -v '{}' . \; 'obj-x86_64-linux-gnu/HYPHYMPI' -> './HYPHYMPI' 'obj-x86_64-linux-gnu/HYPHYMP' -> './HYPHYMP' 'obj-x86_64-linux-gnu/hyphy' -> './hyphy' ./run_unit_tests.sh ./tests/hbltests/UnitTests/HBLCommands/Abs.bf ./tests/hbltests/UnitTests/HBLCommands/Add.bf ./tests/hbltests/UnitTests/HBLCommands/Ampersand.bf ./tests/hbltests/UnitTests/HBLCommands/Arctan.bf ./tests/hbltests/UnitTests/HBLCommands/BayesianGraphicalModel.bf ./tests/hbltests/UnitTests/HBLCommands/Beta.bf ./tests/hbltests/UnitTests/HBLCommands/BranchLength.bf ./tests/hbltests/UnitTests/HBLCommands/Branchcount.bf ./tests/hbltests/UnitTests/HBLCommands/Branchname.bf ./tests/hbltests/UnitTests/HBLCommands/CChi2.bf ./tests/hbltests/UnitTests/HBLCommands/CGammaDist.bf ./tests/hbltests/UnitTests/HBLCommands/Call.bf ./tests/hbltests/UnitTests/HBLCommands/Caret.bf ./tests/hbltests/UnitTests/HBLCommands/Category.bf ./tests/hbltests/UnitTests/HBLCommands/Columns.bf ./tests/hbltests/UnitTests/HBLCommands/Continue.bf ./tests/hbltests/UnitTests/HBLCommands/Cos.bf ./tests/hbltests/UnitTests/HBLCommands/DataSet.bf ./tests/hbltests/UnitTests/HBLCommands/DataSetFilter.bf ./tests/hbltests/UnitTests/HBLCommands/DeleteObject.bf ./tests/hbltests/UnitTests/HBLCommands/Differentiate.bf ./tests/hbltests/UnitTests/HBLCommands/Divide.bf ./tests/hbltests/UnitTests/HBLCommands/Do.bf ./tests/hbltests/UnitTests/HBLCommands/DoSQL.bf ./tests/hbltests/UnitTests/HBLCommands/Dollarsign.bf ./tests/hbltests/UnitTests/HBLCommands/DoubleAmpersand.bf ./tests/hbltests/UnitTests/HBLCommands/DoubleEquals.bf ./tests/hbltests/UnitTests/HBLCommands/DoubleVerticalBar.bf ./tests/hbltests/UnitTests/HBLCommands/Eigensystem.bf ./tests/hbltests/UnitTests/HBLCommands/Erf.bf ./tests/hbltests/UnitTests/HBLCommands/Eval.bf ./tests/hbltests/UnitTests/HBLCommands/ExclamationPoint.bf ./tests/hbltests/UnitTests/HBLCommands/ExclamationPointEquals.bf ./tests/hbltests/UnitTests/HBLCommands/ExecuteAFile.bf ./tests/hbltests/UnitTests/HBLCommands/ExecuteCommands.bf ./tests/hbltests/UnitTests/HBLCommands/Exp.bf ./tests/hbltests/UnitTests/HBLCommands/Export.bf ./tests/hbltests/UnitTests/HBLCommands/Ffunction.bf ./tests/hbltests/UnitTests/HBLCommands/FindRoot.bf ./tests/hbltests/UnitTests/HBLCommands/For.bf ./tests/hbltests/UnitTests/HBLCommands/Format.bf ./tests/hbltests/UnitTests/HBLCommands/Function.bf ./tests/hbltests/UnitTests/HBLCommands/Gamma.bf ./tests/hbltests/UnitTests/HBLCommands/GammaDist.bf ./tests/hbltests/UnitTests/HBLCommands/GetDataInfo.bf ./tests/hbltests/UnitTests/HBLCommands/GetInformation.bf ./tests/hbltests/UnitTests/HBLCommands/GetString.bf ./tests/hbltests/UnitTests/HBLCommands/Greaterthan.bf ./tests/hbltests/UnitTests/HBLCommands/Greaterthanorequalto.bf ./tests/hbltests/UnitTests/HBLCommands/HarvestFrequencies.bf ./tests/hbltests/UnitTests/HBLCommands/IBeta.bf ./tests/hbltests/UnitTests/HBLCommands/IGamma.bf ./tests/hbltests/UnitTests/HBLCommands/If.bf ./tests/hbltests/UnitTests/HBLCommands/Integrate.bf ./tests/hbltests/UnitTests/HBLCommands/Inverse.bf ./tests/hbltests/UnitTests/HBLCommands/JSON.bf ./tests/hbltests/UnitTests/HBLCommands/Join.bf ./tests/hbltests/UnitTests/HBLCommands/LUDecompose.bf ./tests/hbltests/UnitTests/HBLCommands/LUSolve.bf ./tests/hbltests/UnitTests/HBLCommands/Lessthan.bf ./tests/hbltests/UnitTests/HBLCommands/Lessthanorequalto.bf ./tests/hbltests/UnitTests/HBLCommands/LnGamma.bf ./tests/hbltests/UnitTests/HBLCommands/LoadFunctionLibrary.bf ./tests/hbltests/UnitTests/HBLCommands/Log.bf ./tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf ./tests/hbltests/UnitTests/HBLCommands/Max.bf ./tests/hbltests/UnitTests/HBLCommands/Min.bf ./tests/hbltests/UnitTests/HBLCommands/Model.bf ./tests/hbltests/UnitTests/HBLCommands/Percentsign.bf ./tests/hbltests/UnitTests/HBLCommands/Random.bf ./tests/hbltests/UnitTests/HBLCommands/ReplicateConstraint.bf ./tests/hbltests/UnitTests/HBLCommands/RequireVersion.bf ./tests/hbltests/UnitTests/HBLCommands/RerootTree.bf ./tests/hbltests/UnitTests/HBLCommands/Return.bf ./tests/hbltests/UnitTests/HBLCommands/Rows.bf ./tests/hbltests/UnitTests/HBLCommands/Simplex.bf ./tests/hbltests/UnitTests/HBLCommands/Simplify.bf ./tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf ./tests/hbltests/UnitTests/HBLCommands/Sin.bf ./tests/hbltests/UnitTests/HBLCommands/Sqrt.bf ./tests/hbltests/UnitTests/HBLCommands/Sscanf.bf ./tests/hbltests/UnitTests/HBLCommands/Subtract.bf ./tests/hbltests/UnitTests/HBLCommands/Tan.bf ./tests/hbltests/UnitTests/HBLCommands/Time.bf ./tests/hbltests/UnitTests/HBLCommands/TipCount.bf ./tests/hbltests/UnitTests/HBLCommands/TipName.bf ./tests/hbltests/UnitTests/HBLCommands/Topology.bf ./tests/hbltests/UnitTests/HBLCommands/Transpose.bf ./tests/hbltests/UnitTests/HBLCommands/Tree.bf ./tests/hbltests/UnitTests/HBLCommands/Type.bf ./tests/hbltests/UnitTests/HBLCommands/While.bf ./tests/hbltests/UnitTests/HBLCommands/ZCDF.bf ./tests/hbltests/UnitTests/HBLCommands/assert.bf ./tests/hbltests/UnitTests/HBLCommands/break.bf ./tests/hbltests/UnitTests/HBLCommands/fscanf_fprintf.bf ./tests/hbltests/UnitTests/HBLCommands/include.bf ./tests/hbltests/UnitTests/HBLCommands/lfunction.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_iofunctions.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_math.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf ./tests/hbltests/UnitTests/HBLCommands/namespace.bf \n\n------------------------ALL TEST PASSED------------------------------------\n make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j6 install DESTDIR=/build/reproducible-path/hyphy-2.5.69\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LHT.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/T3P -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR -- Installing: 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/error-filter.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/hyphy -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set non-toolchain portion of runtime path of "/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' # convert a few ISO-8859-1 files to address national-encoding set -e \ ; for file in /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst \ ; do iconv -f ISO-8859-1 -t UTF-8 < "${file}" > "${file}.new" \ ; mv -v "${file}.new" "${file}" \ ; done renamed '/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf.new' -> '/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf' renamed '/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl.new' -> '/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl' renamed '/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst.new' -> '/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst' dh_install -a find -type f -name HYPHYMPI -exec chrpath --delete '{}' ';' mkdir -p debian/hyphy-mpi/usr/lib/hyphy/bin mkdir -p debian/hyphy-pt/usr/lib/hyphy/bin cp obj-avx/HYPHYMPI debian/hyphy-mpi/usr/lib/hyphy/bin/HYPHYMPI-avx cp obj-sse3/HYPHYMPI debian/hyphy-mpi/usr/lib/hyphy/bin/HYPHYMPI-sse3 cp obj-avx/hyphy debian/hyphy-pt/usr/lib/hyphy/bin/hyphy-avx cp obj-sse3/hyphy debian/hyphy-pt/usr/lib/hyphy/bin/hyphy-sse3 mv debian/hyphy-mpi/usr/bin/HYPHYMPI debian/hyphy-mpi/usr/lib/hyphy/bin/ mv debian/hyphy-pt/usr/bin/hyphy debian/hyphy-pt/usr/lib/hyphy/bin/ cd /build/reproducible-path/hyphy-2.5.69+dfsg/debian/hyphy-mpi/usr/bin && \ ln -s ../lib/hyphy/bin/simd-dispatch HYPHYMPI cd /build/reproducible-path/hyphy-2.5.69+dfsg/debian/hyphy-pt/usr/bin && \ ln -s ../lib/hyphy/bin/simd-dispatch hyphy make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg' debian/rules override_dh_installdocs-arch make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' dh_installdocs -a for news in debian/NEWS.Debian.* ; do \ pkg=`echo ${news} | sed 's/.*NEWS.Debian.//'` ; \ cp -a ${news} debian/${pkg}/usr/share/doc/${pkg}/NEWS.Debian ; \ done make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg' dh_installchangelogs -a -O--buildsystem=cmake dh_installexamples -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_lintian -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.69+dfsg-1_amd64.deb'. dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.69+dfsg-1_amd64.deb'. dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.69+dfsg-1_amd64.deb'. dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.69+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../hyphy_2.5.69+dfsg-1_amd64.buildinfo dpkg-genchanges --build=any -O../hyphy_2.5.69+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-06-23T09:41:25Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 23 Jun 2025 09:41:27 +0000 | +------------------------------------------------------------------------------+ hyphy_2.5.69+dfsg-1_amd64.changes: ---------------------------------- Format: 1.8 Date: Wed, 05 Mar 2025 12:43:12 +0100 Source: hyphy Binary: hyphy-mpi hyphy-mpi-dbgsym hyphy-pt hyphy-pt-dbgsym Architecture: amd64 Version: 2.5.69+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: hyphy-mpi - Hypothesis testing using Phylogenies (MPI version) hyphy-pt - Hypothesis testing using Phylogenies (pthreads version) Changes: hyphy (2.5.69+dfsg-1) unstable; urgency=medium . * New upstream version 2.5.69+dfsg (no changes). * rm_arch_specific_flags.patch: update to include NEON variants. This is needed to fix illegal instruction errors seen in autopkgtest. * d/rules: leave a note to build NEON SIMDe variants. * d/control: declare compliance to standards version 4.7.2. 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hyphy-pt_2.5.69+dfsg-1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 23 Jun 2025 09:41:24 +0000 Build-Path: /build/reproducible-path/hyphy-2.5.69+dfsg Installed-Build-Depends: adduser (= 3.144), autoconf (= 2.72-3), automake (= 1:1.17-3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.6), base-passwd (= 3.6.6), bash (= 5.2.37-1.1), binutils (= 2.44-2), binutils-common (= 2.44-2), binutils-x86-64-linux-gnu (= 2.44-2), bsdextrautils (= 2.40.4-5), bsdutils (= 1:2.40.4-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), chrpath (= 0.18-1), cmake (= 3.31.6-1), cmake-data (= 3.31.6-1), comerr-dev (= 2.1-1.47.2-1), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-17), cpp-14-x86-64-linux-gnu (= 14.2.0-17), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.89), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-2), dpkg (= 1.22.15), dpkg-dev (= 1.22.15), dwz (= 0.15-1+b1), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-17), g++-14-x86-64-linux-gnu (= 14.2.0-17), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-17), gcc-14-base (= 14.2.0-17), gcc-14-x86-64-linux-gnu (= 14.2.0-17), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), gfortran-14 (= 14.2.0-17), gfortran-14-x86-64-linux-gnu (= 14.2.0-17), grep (= 3.11-4), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), ibverbs-providers (= 56.0-2), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-4), libacl1 (= 2.3.2-2+b1), libamd-comgr2 (= 6.0+git20231212.4510c28+dfsg-3+b2), libamdhip64-5 (= 5.7.1-5+b1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-1.1), libasan8 (= 14.2.0-17), libatomic1 (= 14.2.0-17), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-2), libblkid1 (= 2.40.4-5), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbsd0 (= 0.12.2-2), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-3), libc-dev-bin (= 2.41-3), libc6 (= 2.41-3), libc6-dev (= 2.41-3), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.73-4), libcbor0.10 (= 0.10.2-2), libcc1-0 (= 14.2.0-17), libcom-err2 (= 1.47.2-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-2), libctf0 (= 2.44-2), libcurl3t64-gnutls (= 8.12.1-3), libcurl4-gnutls-dev (= 8.12.1-3), libcurl4t64 (= 8.12.1-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdpkg-perl (= 1.22.15), libdrm-amdgpu1 (= 2.4.124-1), libdrm-common (= 2.4.124-1), libdrm2 (= 2.4.124-1), libedit2 (= 3.1-20250104-1), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libevent-core-2.1-7t64 (= 2.1.12-stable-10+b1), libevent-dev (= 2.1.12-stable-10+b1), libevent-extra-2.1-7t64 (= 2.1.12-stable-10+b1), libevent-openssl-2.1-7t64 (= 2.1.12-stable-10+b1), libevent-pthreads-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.6.4-1), libexpat1-dev (= 2.6.4-1), libfabric1 (= 1.17.0-3.1), libffi8 (= 3.4.7-1), libfido2-1 (= 1.15.0-1+b1), libfile-stripnondeterminism-perl (= 1.14.1-2), libfuse3-3 (= 3.14.0-10), libgcc-14-dev (= 14.2.0-17), libgcc-s1 (= 14.2.0-17), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran-14-dev (= 14.2.0-17), libgfortran5 (= 14.2.0-17), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-17), libgprofng0 (= 2.44-2), libgssapi-krb5-2 (= 1.21.3-4), libgssrpc4t64 (= 1.21.3-4), libhogweed6t64 (= 3.10.1-1), libhsa-runtime64-1 (= 6.1.2-3), libhsakmt1 (= 6.2.4+ds-1), libhwasan0 (= 14.2.0-17), libhwloc-dev (= 2.12.0-1), libhwloc-plugins (= 2.12.0-1), libhwloc15 (= 2.12.0-1), libibmad5 (= 56.0-2), libibumad3 (= 56.0-2), libibverbs-dev (= 56.0-2), libibverbs1 (= 56.0-2), libicu72 (= 72.1-6), libidn2-0 (= 2.3.7-2+b1), libidn2-dev (= 2.3.7-2+b1), libisl23 (= 0.27-1), libitm1 (= 14.2.0-17), libjansson4 (= 2.14-2+b3), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-sphinxdoc (= 8.1.3-5), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libjsoncpp26 (= 1.9.6-3), libk5crypto3 (= 1.21.3-4), libkadm5clnt-mit12 (= 1.21.3-4), libkadm5srv-mit12 (= 1.21.3-4), libkdb5-10t64 (= 1.21.3-4), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-4), libkrb5-dev (= 1.21.3-4), libkrb5support0 (= 1.21.3-4), libldap-dev (= 2.6.9+dfsg-1), libldap2 (= 2.6.9+dfsg-1), libllvm17t64 (= 1:17.0.6-21), liblsan0 (= 14.2.0-17), libltdl-dev (= 2.5.4-4), libltdl7 (= 2.5.4-4), liblz4-1 (= 1.10.0-3), liblzma5 (= 5.6.4-1), libmagic-mgc (= 1:5.45-3+b1), libmagic1t64 (= 1:5.45-3+b1), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.4-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libmunge2 (= 0.5.16-1), libncursesw6 (= 6.5+20250216-1), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1), libnghttp2-dev (= 1.64.0-1), libnghttp3-9 (= 1.8.0-1), libnghttp3-dev (= 1.8.0-1), libngtcp2-16 (= 1.11.0-1), libngtcp2-crypto-gnutls-dev (= 1.11.0-1), libngtcp2-crypto-gnutls8 (= 1.11.0-1), libngtcp2-dev (= 1.11.0-1), libnl-3-200 (= 3.7.0-0.3+b1), libnl-3-dev (= 3.7.0-0.3+b1), libnl-route-3-200 (= 3.7.0-0.3+b1), libnl-route-3-dev (= 3.7.0-0.3+b1), libnuma-dev (= 2.0.18-1+b1), libnuma1 (= 2.0.18-1+b1), libopenmpi-dev (= 5.0.7-1), libopenmpi40 (= 5.0.7-1), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpciaccess0 (= 0.17-3+b3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-2), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpmix-dev (= 5.0.6-4), libpmix2t64 (= 5.0.6-4), libproc2-0 (= 2:4.0.4-7), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpsm-infinipath1 (= 3.3+20.604758e7-6.3), libpsm2-2 (= 11.2.185-2.1), libpython3-all-dev (= 3.13.2-2), libpython3-dev (= 3.13.2-2), libpython3-stdlib (= 3.13.2-2), libpython3.13 (= 3.13.2-1), libpython3.13-dev (= 3.13.2-1), libpython3.13-minimal (= 3.13.2-1), libpython3.13-stdlib (= 3.13.2-1), libquadmath0 (= 14.2.0-17), librdmacm1t64 (= 56.0-2), libreadline8t64 (= 8.2-6), librhash1 (= 1.4.5-1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.5.5-2+b1), libselinux1 (= 3.8-4), libsemanage-common (= 3.8-1), libsemanage2 (= 3.8-1+b1), libsepol2 (= 3.8-1), libsframe1 (= 2.44-2), libsmartcols1 (= 2.40.4-5), libsqlite3-0 (= 3.46.1-1), libsqlite3-dev (= 3.46.1-1), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.4.1-1), libssl3t64 (= 3.4.1-1), libstdc++-14-dev (= 14.2.0-17), libstdc++6 (= 14.2.0-17), libsystemd0 (= 257.3-1), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-1), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-17), libubsan1 (= 14.2.0-17), libuchardet0 (= 0.0.8-1+b2), libucx0 (= 1.18.1+ds-1), libudev1 (= 257.3-1), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-5), libuv1t64 (= 1.50.0-2), libx11-6 (= 2:1.8.10-2), libx11-data (= 2:1.8.10-2), libxau6 (= 1:1.0.11-1), libxcb1 (= 1.17.0-2+b1), libxdmcp6 (= 1:1.1.5-1), libxext6 (= 2:1.3.4-1+b3), libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b2), libxnvctrl0 (= 535.171.04-1+b2), libxxhash0 (= 0.8.3-2), libz3-4 (= 4.13.3-1), libzstd-dev (= 1.5.6+dfsg-2), libzstd1 (= 1.5.6+dfsg-2), linux-libc-dev (= 6.12.17-1), login.defs (= 1:4.17.3-1), m4 (= 1.4.19-5), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), media-types (= 12.0.0), mpi-default-dev (= 1.18), ncurses-base (= 6.5+20250216-1), ncurses-bin (= 6.5+20250216-1), netbase (= 6.4), nettle-dev (= 3.10.1-1), ocl-icd-libopencl1 (= 2.3.2-1+b2), openmpi-bin (= 5.0.7-1), openmpi-common (= 5.0.7-1), openssh-client (= 1:9.9p2-1), openssl-provider-legacy (= 3.4.1-1), passwd (= 1:4.17.3-1), patch (= 2.7.6-7), perl (= 5.40.1-2), perl-base (= 5.40.1-2), perl-modules-5.40 (= 5.40.1-2), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-7), python3 (= 3.13.2-2), python3-all (= 3.13.2-2), python3-all-dev (= 3.13.2-2), python3-dev (= 3.13.2-2), python3-minimal (= 3.13.2-2), python3.13 (= 3.13.2-1), python3.13-dev (= 3.13.2-1), python3.13-minimal (= 3.13.2-1), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.14-3), tar (= 1.35+dfsg-3.1), tzdata (= 2025a-2), util-linux (= 2.40.4-5), xz-utils (= 5.6.4-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1741174992" +------------------------------------------------------------------------------+ | Package contents Mon, 23 Jun 2025 09:41:28 +0000 | +------------------------------------------------------------------------------+ hyphy-mpi-dbgsym_2.5.69+dfsg-1_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 7860124 bytes: control archive=692 bytes. 470 bytes, 12 lines control 404 bytes, 4 lines md5sums Package: hyphy-mpi-dbgsym Source: hyphy Version: 2.5.69+dfsg-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 12511 Depends: hyphy-mpi (= 2.5.69+dfsg-1) Section: debug Priority: optional Description: debug symbols for hyphy-mpi Build-Ids: 3c469de9e7a5f0e8afa8e7d86ca6bf6503d4d43b fc2b1e859f81eb1ac9c9b66dd7e9ce072105a250 fc317dd27590726d66fd79fd8c28969b009dcdf4 drwxr-xr-x root/root 0 2025-03-05 11:43 ./ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.build-id/3c/ -rw-r--r-- root/root 4182680 2025-03-05 11:43 ./usr/lib/debug/.build-id/3c/469de9e7a5f0e8afa8e7d86ca6bf6503d4d43b.debug drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.build-id/fc/ -rw-r--r-- root/root 4182672 2025-03-05 11:43 ./usr/lib/debug/.build-id/fc/2b1e859f81eb1ac9c9b66dd7e9ce072105a250.debug -rw-r--r-- root/root 4182704 2025-03-05 11:43 ./usr/lib/debug/.build-id/fc/317dd27590726d66fd79fd8c28969b009dcdf4.debug drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 248424 2025-03-05 11:43 ./usr/lib/debug/.dwz/x86_64-linux-gnu/hyphy-mpi.debug drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-03-05 11:43 ./usr/share/doc/hyphy-mpi-dbgsym -> hyphy-mpi hyphy-mpi_2.5.69+dfsg-1_amd64.deb --------------------------------- new Debian package, version 2.0. size 961136 bytes: control archive=1264 bytes. 1212 bytes, 22 lines control 550 bytes, 8 lines md5sums Package: hyphy-mpi Source: hyphy Version: 2.5.69+dfsg-1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 7342 Depends: libc6 (>= 2.38), libcurl3t64-gnutls (>= 7.16.2), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libopenmpi40 (>= 5.0.7), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 5), zlib1g (>= 1:1.2.11.dfsg), hyphy-common (= 2.5.69+dfsg-1) Section: science Priority: optional Homepage: https://hyphy.org/ Description: Hypothesis testing using Phylogenies (MPI version) HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939. . This package provides an executable using MPI to do multiprocessing. drwxr-xr-x root/root 0 2025-03-05 11:43 ./ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/bin/ lrwxrwxrwx root/root 0 2025-03-05 11:43 ./usr/bin/HYPHYMPI -> ../lib/hyphy/bin/simd-dispatch drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/hyphy/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/hyphy/bin/ -rwxr-xr-x root/root 2495208 2025-03-05 11:43 ./usr/lib/hyphy/bin/HYPHYMPI -rwxr-xr-x root/root 2495208 2025-03-05 11:43 ./usr/lib/hyphy/bin/HYPHYMPI-avx -rwxr-xr-x root/root 2495208 2025-03-05 11:43 ./usr/lib/hyphy/bin/HYPHYMPI-sse3 drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/doc/hyphy-mpi/ -rw-r--r-- root/root 247 2025-03-05 11:43 ./usr/share/doc/hyphy-mpi/NEWS.Debian.gz -rw-r--r-- root/root 3451 2025-03-05 11:43 ./usr/share/doc/hyphy-mpi/changelog.Debian.gz -rw-r--r-- root/root 4664 2025-03-05 11:43 ./usr/share/doc/hyphy-mpi/copyright drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 81 2025-03-05 11:43 ./usr/share/lintian/overrides/hyphy-mpi drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/man/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/man/man1/ -rw-r--r-- root/root 4751 2025-03-05 11:43 ./usr/share/man/man1/HYPHYMPI.1.gz hyphy-pt-dbgsym_2.5.69+dfsg-1_amd64.deb --------------------------------------- new Debian package, version 2.0. size 7765956 bytes: control archive=700 bytes. 467 bytes, 12 lines control 403 bytes, 4 lines md5sums Package: hyphy-pt-dbgsym Source: hyphy Version: 2.5.69+dfsg-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 12328 Depends: hyphy-pt (= 2.5.69+dfsg-1) Section: debug Priority: optional Description: debug symbols for hyphy-pt Build-Ids: 0641d93003b47a71223b80416f3f31bd4459a5fe a35bac71f667eebb91a7d535a0e981c8859c84c2 dc806f71ece84bba9c39f98e0341841faff25c71 drwxr-xr-x root/root 0 2025-03-05 11:43 ./ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.build-id/06/ -rw-r--r-- root/root 4119736 2025-03-05 11:43 ./usr/lib/debug/.build-id/06/41d93003b47a71223b80416f3f31bd4459a5fe.debug drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.build-id/a3/ -rw-r--r-- root/root 4119704 2025-03-05 11:43 ./usr/lib/debug/.build-id/a3/5bac71f667eebb91a7d535a0e981c8859c84c2.debug drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.build-id/dc/ -rw-r--r-- root/root 4119680 2025-03-05 11:43 ./usr/lib/debug/.build-id/dc/806f71ece84bba9c39f98e0341841faff25c71.debug drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 247024 2025-03-05 11:43 ./usr/lib/debug/.dwz/x86_64-linux-gnu/hyphy-pt.debug drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-03-05 11:43 ./usr/share/doc/hyphy-pt-dbgsym -> hyphy-pt hyphy-pt_2.5.69+dfsg-1_amd64.deb -------------------------------- new Debian package, version 2.0. size 941392 bytes: control archive=1280 bytes. 1196 bytes, 22 lines control 605 bytes, 9 lines md5sums Package: hyphy-pt Source: hyphy Version: 2.5.69+dfsg-1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 7187 Depends: libc6 (>= 2.38), libcurl3t64-gnutls (>= 7.16.2), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 5), zlib1g (>= 1:1.2.11.dfsg), hyphy-common (= 2.5.69+dfsg-1) Section: science Priority: optional Homepage: https://hyphy.org/ Description: Hypothesis testing using Phylogenies (pthreads version) HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939. . This package provides an executable using pthreads to do multiprocessing. drwxr-xr-x root/root 0 2025-03-05 11:43 ./ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/bin/ lrwxrwxrwx root/root 0 2025-03-05 11:43 ./usr/bin/hyphy -> ../lib/hyphy/bin/simd-dispatch drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/hyphy/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/lib/hyphy/bin/ -rwxr-xr-x root/root 2441960 2025-03-05 11:43 ./usr/lib/hyphy/bin/hyphy -rwxr-xr-x root/root 2441960 2025-03-05 11:43 ./usr/lib/hyphy/bin/hyphy-avx -rwxr-xr-x root/root 2441960 2025-03-05 11:43 ./usr/lib/hyphy/bin/hyphy-sse3 drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/doc/hyphy-pt/ -rw-r--r-- root/root 234 2025-03-05 11:43 ./usr/share/doc/hyphy-pt/NEWS.Debian.gz -rw-r--r-- root/root 512 2025-03-05 11:43 ./usr/share/doc/hyphy-pt/README.Debian -rw-r--r-- root/root 3450 2025-03-05 11:43 ./usr/share/doc/hyphy-pt/changelog.Debian.gz -rw-r--r-- root/root 4664 2025-03-05 11:43 ./usr/share/doc/hyphy-pt/copyright drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 77 2025-03-05 11:43 ./usr/share/lintian/overrides/hyphy-pt drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/man/ drwxr-xr-x root/root 0 2025-03-05 11:43 ./usr/share/man/man1/ -rw-r--r-- root/root 4751 2025-03-05 11:43 ./usr/share/man/man1/hyphy.1.gz +------------------------------------------------------------------------------+ | Post Build Mon, 23 Jun 2025 09:41:31 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 23 Jun 2025 09:41:31 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 23 Jun 2025 09:41:33 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 363176 Build-Time: 193 Distribution: unstable Host Architecture: amd64 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdY8O0VF/inputs/hyphy_2.5.69+dfsg-1.dsc Machine Architecture: amd64 Package: hyphy Package-Time: 209 Source-Version: 2.5.69+dfsg-1 Space: 363176 Status: successful Version: 2.5.69+dfsg-1 -------------------------------------------------------------------------------- Finished at 2025-06-23T09:41:25Z Build needed 00:03:29, 363176k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdY8O0VF/out checking hyphy-mpi-dbgsym_2.5.69+dfsg-1_amd64.deb: size differs for hyphy-mpi-dbgsym_2.5.69+dfsg-1_amd64.deb