=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdM7cCjZ/inputs/mapsembler2_2.2.4+dfsg1-4_amd64.buildinfo Source: mapsembler2 Version: 2.2.4+dfsg1-4 rebuilderd-worker node: osuosl4-amd64 +------------------------------------------------------------------------------+ | Downloading sources Sun, 27 Jul 2025 09:17:59 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [168 kB] Get:2 https://deb.debian.org/debian sid InRelease [213 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 2s (9,271 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-4.dsc' mapsembler2_2.2.4+dfsg1-4.dsc 2265 SHA256:9c00683679e9b6fe8db1bac016ac724625b993b7fd1b5e130d00b06be82f4de5 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1.orig.tar.xz' mapsembler2_2.2.4+dfsg1.orig.tar.xz 1369588 SHA256:44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-4.debian.tar.xz' mapsembler2_2.2.4+dfsg1-4.debian.tar.xz 24464 SHA256:e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 mapsembler2_2.2.4+dfsg1.orig.tar.xz e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz 9c00683679e9b6fe8db1bac016ac724625b993b7fd1b5e130d00b06be82f4de5 mapsembler2_2.2.4+dfsg1-4.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sun, 27 Jul 2025 09:18:03 +0000 | +------------------------------------------------------------------------------+ Rebuilding mapsembler2=2.2.4+dfsg1-4 in /srv/rebuilderd/tmp/rebuilderdM7cCjZ/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdM7cCjZ/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdM7cCjZ/inputs/mapsembler2_2.2.4+dfsg1-4_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdM7cCjZ/inputs/mapsembler2_2.2.4+dfsg1-4_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid InRelease [165 kB] Get:2 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 Packages [8721 kB] Fetched 8886 kB in 1s (6359 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20210818T205324Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libattr1 amd64 1:2.4.48-6 [21.6 kB] Fetched 21.6 kB in 0s (1744 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.4.48-6_amd64.deb' to '/srv/rebuilderd/tmp/tmp3j4b8xnw/libattr1_2.4.48-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Fetched 34.8 kB in 0s (2102 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnokj245s/libsigsegv2_2.13-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libc6 amd64 2.31-16 [2817 kB] Fetched 2817 kB in 0s (61.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe0pnwpes/libc6_2.31-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libaec0 amd64 1.0.5-2 [20.3 kB] Fetched 20.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7yqiencx/libaec0_1.0.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-5 [81.7 kB] Fetched 81.7 kB in 0s (2329 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpivngq5mi/libhdf5-hl-100_1.10.6+repack-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libseccomp2 amd64 2.5.1-1 [48.4 kB] Fetched 48.4 kB in 0s (3885 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp63569cto/libseccomp2_2.5.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Fetched 57.3 kB in 0s (3511 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp60xmxk7h/libpsl5_0.21.0-1.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libubsan1 amd64 11.2.0-2 [839 kB] Fetched 839 kB in 0s (20.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpanv_aish/libubsan1_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Fetched 96.9 kB in 0s (4430 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb_sik770/libexpat1_2.2.10-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 ncurses-bin amd64 6.2+20201114-2 [428 kB] Fetched 428 kB in 0s (9917 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqv5pq1gd/ncurses-bin_6.2+20201114-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgssapi-krb5-2 amd64 1.18.3-6 [165 kB] Fetched 165 kB in 0s (1254 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppdrkr8cf/libgssapi-krb5-2_1.18.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Fetched 693 kB in 0s (6963 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7x13pgk/libxml2_2.9.10+dfsg-6.7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libc6-dev amd64 2.31-16 [2254 kB] Fetched 2254 kB in 0s (38.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0py0fjz6/libc6-dev_2.31-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Fetched 145 kB in 0s (8209 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1w1zx8d4/bsdextrautils_2.36.1-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libperl5.32 amd64 5.32.1-5 [4125 kB] Fetched 4125 kB in 0s (58.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfl1tli2g/libperl5.32_5.32.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libkrb5support0 amd64 1.18.3-6 [65.3 kB] Fetched 65.3 kB in 0s (3676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4urne3ho/libkrb5support0_1.18.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 base-passwd amd64 3.5.51 [58.1 kB] Fetched 58.1 kB in 0s (3541 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zagufcy/base-passwd_3.5.51_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 automake all 1:1.16.4-1 [819 kB] Fetched 819 kB in 0s (28.4 MB/s) dpkg-name: info: moved 'automake_1%3a1.16.4-1_all.deb' to '/srv/rebuilderd/tmp/tmpvzwhq4wz/automake_1.16.4-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libpam-modules amd64 1.4.0-9 [326 kB] Fetched 326 kB in 0s (8411 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsmytdr7y/libpam-modules_1.4.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libkrb5-3 amd64 1.18.3-6 [363 kB] Fetched 363 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4m4vy2_4/libkrb5-3_1.18.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libsmartcols1 amd64 2.36.1-8 [157 kB] Fetched 157 kB in 0s (8315 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwablrpu5/libsmartcols1_2.36.1-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Fetched 9534 kB in 0s (20.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuvvbeq12/libboost1.74-dev_1.74.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 gettext-base amd64 0.21-4 [175 kB] Fetched 175 kB in 0s (6711 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp25zmy_c6/gettext-base_0.21-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 cmake amd64 3.18.4-2 [5593 kB] Fetched 5593 kB in 0s (55.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5_eo90mm/cmake_3.18.4-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 linux-libc-dev amd64 5.10.46-4 [1362 kB] Fetched 1362 kB in 0s (28.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31vpccfl/linux-libc-dev_5.10.46-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 tar amd64 1.34+dfsg-1 [847 kB] Fetched 847 kB in 0s (19.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmetuihit/tar_1.34+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgomp1 amd64 11.2.0-2 [106 kB] Fetched 106 kB in 0s (3645 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ukp857j/libgomp1_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Fetched 1644 B in 0s (114 kB/s) dpkg-name: info: moved 'g++_4%3a10.2.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpkeo5wn9k/g++_10.2.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 procps amd64 2:3.3.17-5 [502 kB] Fetched 502 kB in 0s (16.5 MB/s) dpkg-name: info: moved 'procps_2%3a3.3.17-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpvuzgmf0j/procps_3.3.17-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 rpcsvc-proto amd64 1.4.2-3 [63.0 kB] Fetched 63.0 kB in 0s (3626 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5bf2b7u4/rpcsvc-proto_1.4.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Fetched 10.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk74r_leg/libsub-override-perl_0.09-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libaudit-common all 1:3.0.5-1 [15.7 kB] Fetched 15.7 kB in 0s (417 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a3.0.5-1_all.deb' to '/srv/rebuilderd/tmp/tmp1h2548wx/libaudit-common_3.0.5-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 sensible-utils all 0.0.14 [14.8 kB] Fetched 14.8 kB in 0s (993 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmply5iwhp7/sensible-utils_0.0.14_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 autopoint all 0.21-4 [510 kB] Fetched 510 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqzy2puny/autopoint_0.21-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libreadline8 amd64 8.1-2 [168 kB] Fetched 168 kB in 0s (399 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0eq14ap/libreadline8_8.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Fetched 132 kB in 0s (796 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglrttwmc/libuv1_1.40.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 gcc-10-base amd64 10.2.1-6 [201 kB] Fetched 201 kB in 0s (1162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgx7or7yo/gcc-10-base_10.2.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libstdc++6 amd64 11.2.0-2 [576 kB] Fetched 576 kB in 0s (1990 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37xqwnv8/libstdc++6_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 debhelper all 13.4+nmu1 [1039 kB] Fetched 1039 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjrwdmsg5/debhelper_13.4+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libacl1 amd64 2.2.53-10 [31.1 kB] Fetched 31.1 kB in 0s (1731 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx14qstjs/libacl1_2.2.53-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 bzip2 amd64 1.0.8-4 [49.3 kB] Fetched 49.3 kB in 0s (2647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5vmlnal/bzip2_1.0.8-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libitm1 amd64 11.2.0-2 [26.0 kB] Fetched 26.0 kB in 0s (1618 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqmnsm3o6/libitm1_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libcom-err2 amd64 1.46.2-2 [74.2 kB] Fetched 74.2 kB in 0s (4695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfyl_k5t/libcom-err2_1.46.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libcppunit-1.15-0 amd64 1.15.1-2 [145 kB] Fetched 145 kB in 0s (8336 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23z_axab/libcppunit-1.15-0_1.15.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Fetched 34.3 kB in 0s (2782 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3b2xow2z/libpipeline1_1.5.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libatomic1 amd64 11.2.0-2 [9060 B] Fetched 9060 B in 0s (604 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5fj8q__p/libatomic1_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8 [687 kB] Fetched 687 kB in 0s (3121 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjw63klwr/libdb5.3_5.3.28+dfsg1-0.8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libhdf5-cpp-103-1 amd64 1.10.6+repack-5 [141 kB] Fetched 141 kB in 0s (1245 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcyh_le4a/libhdf5-cpp-103-1_1.10.6+repack-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Fetched 1741 kB in 2s (790 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw4dj3c2g/libstdc++-10-dev_10.2.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Fetched 77.1 kB in 0s (5403 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpofl2gajh/libnghttp2-14_1.43.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Fetched 78.9 kB in 0s (5074 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpquz1ly25/libjsoncpp24_1.9.4-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libhdf5-dev amd64 1.10.6+repack-5 [2440 kB] Fetched 2440 kB in 0s (29.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6rmsmguo/libhdf5-dev_1.10.6+repack-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libhogweed6 amd64 3.7.3-1 [320 kB] Fetched 320 kB in 0s (8505 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4j8dgts2/libhogweed6_3.7.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Fetched 66.4 kB in 0s (1407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3keld7pb/libnsl-dev_1.3.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (22.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo369xf0p/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Fetched 129 kB in 0s (7807 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm3g0r8cd/librhash0_1.4.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Fetched 278 kB in 0s (10.8 MB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.0.6-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpe4ihztv7/libjpeg62-turbo-dev_2.0.6-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libcppunit-dev amd64 1.15.1-2 [204 kB] Fetched 204 kB in 0s (8063 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4lmeaox3/libcppunit-dev_1.15.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg-1 [564 kB] Fetched 564 kB in 0s (14.1 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.2.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpyo3vs6n4/libgmp10_6.2.1+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Fetched 126 kB in 0s (7565 kB/s) dpkg-name: info: moved 'libmagic1_1%3a5.39-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpptfoh5as/libmagic1_5.39-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 binutils-common amd64 2.37-4 [2177 kB] Fetched 2177 kB in 0s (23.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5pyie_8c/binutils-common_2.37-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-5 [56.7 kB] Fetched 56.7 kB in 0s (715 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7f83zs84/libhdf5-hl-fortran-100_1.10.6+repack-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgcc-s1 amd64 11.2.0-2 [42.0 kB] Fetched 42.0 kB in 0s (2085 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp71v4xgka/libgcc-s1_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 findutils amd64 4.8.0-1 [697 kB] Fetched 697 kB in 0s (23.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp75nlp3co/findutils_4.8.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 hostname amd64 3.23 [14.9 kB] Fetched 14.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpol2i8u22/hostname_3.23_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 xz-utils amd64 5.2.5-2 [220 kB] Fetched 220 kB in 0s (3616 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe1hi77r4/xz-utils_5.2.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 util-linux amd64 2.36.1-8 [1139 kB] Fetched 1139 kB in 0s (38.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppfjwtnnw/util-linux_2.36.1-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libasan6 amd64 11.2.0-2 [2138 kB] Fetched 2138 kB in 0s (34.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7_tuzpye/libasan6_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libbinutils amd64 2.37-4 [582 kB] Fetched 582 kB in 0s (22.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpimra62di/libbinutils_2.37-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 liblzma5 amd64 5.2.5-2 [168 kB] Fetched 168 kB in 0s (2747 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbvoujt93/liblzma5_5.2.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 gzip amd64 1.10-4 [132 kB] Fetched 132 kB in 0s (8851 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphvc0xowu/gzip_1.10-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libdebconfclient0 amd64 0.260 [50.6 kB] Fetched 50.6 kB in 0s (3328 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpex2stoch/libdebconfclient0_0.260_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libuuid1 amd64 2.36.1-8 [83.7 kB] Fetched 83.7 kB in 0s (3143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoiqmfc_g/libuuid1_2.36.1-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libicu67 amd64 67.1-7 [8622 kB] Fetched 8622 kB in 0s (90.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt7pokaqj/libicu67_67.1-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libpam0g amd64 1.4.0-9 [129 kB] Fetched 129 kB in 0s (7996 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc18911at/libpam0g_1.4.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 gcc amd64 4:10.2.1-1 [5192 B] Fetched 5192 B in 0s (369 kB/s) dpkg-name: info: moved 'gcc_4%3a10.2.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpgmfif5gu/gcc_10.2.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Fetched 44.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6161tq95/libgdbm-compat4_1.19-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] Fetched 90.4 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.2.11.dfsg-2_amd64.deb' to '/srv/rebuilderd/tmp/tmp593y22k4/zlib1g_1.2.11.dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Fetched 26.3 kB in 0s (2265 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvw6c1_7a/libfile-stripnondeterminism-perl_1.12.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libpam-runtime all 1.4.0-9 [207 kB] Fetched 207 kB in 0s (7721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpis56f8ne/libpam-runtime_1.4.0-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 make amd64 4.3-4.1 [396 kB] Fetched 396 kB in 0s (37.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxpo91x12/make_4.3-4.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Fetched 69.1 kB in 0s (3886 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0rqbs5qw/libsasl2-modules-db_2.1.27+dfsg-2.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libcurl4 amd64 7.74.0-1.3+b1 [341 kB] Fetched 341 kB in 0s (4157 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4r1y7ht/libcurl4_7.74.0-1.3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libbz2-1.0 amd64 1.0.8-4 [45.8 kB] Fetched 45.8 kB in 0s (2385 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyvjzxmyd/libbz2-1.0_1.0.8-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libidn2-0 amd64 2.3.2-2 [95.3 kB] Fetched 95.3 kB in 0s (3134 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp80ruh5df/libidn2-0_2.3.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 file amd64 1:5.39-3 [69.1 kB] Fetched 69.1 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.39-3_amd64.deb' to '/srv/rebuilderd/tmp/tmput7pvewh/file_5.39-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libzstd1 amd64 1.4.8+dfsg-2.1 [319 kB] Fetched 319 kB in 0s (8287 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp48s8w_cc/libzstd1_1.4.8+dfsg-2.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libisl23 amd64 0.23-1 [676 kB] Fetched 676 kB in 0s (9954 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zqiknme/libisl23_0.23-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 init-system-helpers all 1.60 [47.1 kB] Fetched 47.1 kB in 0s (2494 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2me0396p/init-system-helpers_1.60_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgfortran5 amd64 11.2.0-2 [710 kB] Fetched 710 kB in 0s (9569 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp38252uat/libgfortran5_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 dpkg-dev all 1.20.9 [2153 kB] Fetched 2153 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzfe122a/dpkg-dev_1.20.9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libhdf5-103-1 amd64 1.10.6+repack-5 [1188 kB] Fetched 1188 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyawn0rt_/libhdf5-103-1_1.10.6+repack-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 lsb-base all 11.1.0 [28.7 kB] Fetched 28.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbyu7lgfm/lsb-base_11.1.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Fetched 98.3 kB in 0s (708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq5tn0mvu/dwz_0.14-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Fetched 15.4 kB in 0s (805 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw9fzjesy/dh-strip-nondeterminism_1.12.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libcrypt1 amd64 1:4.4.25-1 [89.1 kB] Fetched 89.1 kB in 0s (1871 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.25-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp5mkxkgkr/libcrypt1_4.4.25-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Fetched 102 kB in 0s (4885 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk6e0spfx/libncurses6_6.2+20201114-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 patch amd64 2.7.6-7 [128 kB] Fetched 128 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8c99zrd2/patch_2.7.6-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-5 [37.7 kB] Fetched 37.7 kB in 0s (1279 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp25lrtj01/libhdf5-hl-cpp-100_1.10.6+repack-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libdebhelper-perl all 13.4+nmu1 [191 kB] Fetched 191 kB in 0s (563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1twi78md/libdebhelper-perl_13.4+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libc-bin amd64 2.31-16 [822 kB] Fetched 822 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpakxlfe8t/libc-bin_2.31-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libhdf5-fortran-102 amd64 1.10.6+repack-5 [105 kB] Fetched 105 kB in 0s (1436 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2xk9tbkp/libhdf5-fortran-102_1.10.6+repack-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libquadmath0 amd64 11.2.0-2 [144 kB] Fetched 144 kB in 0s (8045 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7y_n__wa/libquadmath0_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 bsdutils amd64 1:2.36.1-8 [148 kB] Fetched 148 kB in 0s (5214 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.36.1-8_amd64.deb' to '/srv/rebuilderd/tmp/tmpib6vxh4_/bsdutils_2.36.1-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Fetched 106 kB in 0s (5621 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu07s_u32/libsasl2-2_2.1.27+dfsg-2.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Fetched 83.9 kB in 0s (3099 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5gjmsuuk/libtirpc3_1.3.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libtool all 2.4.6-15 [513 kB] Fetched 513 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8b68jei9/libtool_2.4.6-15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Fetched 279 kB in 0s (7072 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphjn3vsgx/libbrotli1_1.0.9-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libctf-nobfd0 amd64 2.37-4 [155 kB] Fetched 155 kB in 0s (7358 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcsw5c12v/libctf-nobfd0_2.37-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Fetched 67.8 kB in 0s (408 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.0.6-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp6u_ytsmx/libjpeg-dev_2.0.6-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 liblz4-1 amd64 1.9.3-2 [57.5 kB] Fetched 57.5 kB in 0s (812 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_3nj81oc/liblz4-1_1.9.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libpam-modules-bin amd64 1.4.0-9 [108 kB] Fetched 108 kB in 0s (3322 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc3h_9ecr/libpam-modules-bin_1.4.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 gettext amd64 0.21-4 [1311 kB] Fetched 1311 kB in 1s (1857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40djr10r/gettext_0.21-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 readline-common all 8.1-2 [73.8 kB] Fetched 73.8 kB in 0s (1666 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp732g519f/readline-common_8.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 hdf5-helpers amd64 1.10.6+repack-5 [40.4 kB] Fetched 40.4 kB in 0s (2345 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplyk_9kbe/hdf5-helpers_1.10.6+repack-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libsz2 amd64 1.0.5-2 [7384 B] Fetched 7384 B in 0s (457 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg7pjnvc/libsz2_1.0.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 cpp-10 amd64 10.2.1-6 [8528 kB] Fetched 8528 kB in 0s (40.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvjke_nx2/cpp-10_10.2.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 coreutils amd64 8.32-4+b1 [2867 kB] Fetched 2867 kB in 0s (23.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78cmz_ud/coreutils_8.32-4+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libcap-ng0 amd64 0.7.9-2.2+b1 [14.8 kB] Fetched 14.8 kB in 0s (465 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0qly3rgj/libcap-ng0_0.7.9-2.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Fetched 9380 kB in 0s (99.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsqbfwlbr/g++-10_10.2.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libaec-dev amd64 1.0.5-2 [18.9 kB] Fetched 18.9 kB in 0s (1191 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7375vprh/libaec-dev_1.0.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libffi7 amd64 3.3-6 [23.1 kB] Fetched 23.1 kB in 0s (1496 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqxjbzmel/libffi7_3.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libk5crypto3 amd64 1.18.3-6 [113 kB] Fetched 113 kB in 0s (4657 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyyd2p060/libk5crypto3_1.18.3-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libmpc3 amd64 1.2.0-1 [45.0 kB] Fetched 45.0 kB in 0s (2140 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxg95gngk/libmpc3_1.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 man-db amd64 2.9.4-2 [1354 kB] Fetched 1354 kB in 0s (8394 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8jitfnyz/man-db_2.9.4-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libpcre2-8-0 amd64 10.36-2 [247 kB] Fetched 247 kB in 1s (246 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8vxzldce/libpcre2-8-0_10.36-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 ncurses-base all 6.2+20201114-2 [271 kB] Fetched 271 kB in 0s (577 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnlg23fsl/ncurses-base_6.2+20201114-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libssh2-1 amd64 1.9.0-3 [169 kB] Fetched 169 kB in 1s (238 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqyxjrig/libssh2-1_1.9.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Fetched 4548 B in 0s (10.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9e8k7wt6/libboost-dev_1.74.0.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 sysvinit-utils amd64 2.96-7 [25.3 kB] Fetched 25.3 kB in 0s (181 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt0rdkw5a/sysvinit-utils_2.96-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 perl amd64 5.32.1-5 [293 kB] Fetched 293 kB in 1s (565 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqew8gii_/perl_5.32.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 perl-base amd64 5.32.1-5 [1629 kB] Fetched 1629 kB in 1s (1456 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptcspv4yn/perl-base_5.32.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Fetched 39.5 kB in 0s (938 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4_006cfk/libnsl2_1.3.0-2_amd64.deb' Downloading dependency 1 of 199: libattr1:amd64=1:2.4.48-6 Downloading dependency 2 of 199: libsigsegv2:amd64=2.13-1 Downloading dependency 3 of 199: libc6:amd64=2.31-16 Downloading dependency 4 of 199: libaec0:amd64=1.0.5-2 Downloading dependency 5 of 199: libhdf5-hl-100:amd64=1.10.6+repack-5 Downloading dependency 6 of 199: libseccomp2:amd64=2.5.1-1 Downloading dependency 7 of 199: libpsl5:amd64=0.21.0-1.2 Downloading dependency 8 of 199: libubsan1:amd64=11.2.0-2 Downloading dependency 9 of 199: libexpat1:amd64=2.2.10-2 Downloading dependency 10 of 199: ncurses-bin:amd64=6.2+20201114-2 Downloading dependency 11 of 199: libgssapi-krb5-2:amd64=1.18.3-6 Downloading dependency 12 of 199: 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Downloading dependency 126 of 199: libpcre2-8-0:amd64=10.36-2 Downloading dependency 127 of 199: ncurses-base:amd64=6.2+20201114-2 Downloading dependency 128 of 199: libssh2-1:amd64=1.9.0-3 Downloading dependency 129 of 199: libboost-dev:amd64=1.74.0.3 Downloading dependency 130 of 199: sysvinit-utils:amd64=2.96-7 Downloading dependency 131 of 199: perl:amd64=5.32.1-5 Downloading dependency 132 of 199: perl-base:amd64=5.32.1-5 Downloading dependency 133 of 199: libnsl2:amd64=1.3.0-2 Downloading dependency 134 of 199: libkeyutils1:amd64=1.6.1-2Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Fetched 15.4 kB in 0s (996 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxag2jgb/libkeyutils1_1.6.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 diffutils amd64 1:3.7-5 [373 kB] Fetched 373 kB in 0s (16.1 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.7-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpl_14wvcz/diffutils_3.7-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libmount1 amd64 2.36.1-8 [211 kB] Fetched 211 kB in 0s (5957 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmqz4t93o/libmount1_2.36.1-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 groff-base amd64 1.22.4-6 [936 kB] Fetched 936 kB in 0s (24.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqp_t2qa/groff-base_1.22.4-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libctf0 amd64 2.37-4 [98.0 kB] Fetched 98.0 kB in 0s (7050 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbshi6kl2/libctf0_2.37-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgnutls30 amd64 3.7.1-5 [1340 kB] Fetched 1340 kB in 0s (6883 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3i4kouy1/libgnutls30_3.7.1-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libaudit1 amd64 1:3.0.5-1 [51.8 kB] Fetched 51.8 kB in 0s (3726 kB/s) dpkg-name: info: moved 'libaudit1_1%3a3.0.5-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpsgruldc8/libaudit1_3.0.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libc-dev-bin amd64 2.31-16 [238 kB] Fetched 238 kB in 0s (3597 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo8kumq87/libc-dev-bin_2.31-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgpg-error0 amd64 1.38-2 [77.5 kB] Fetched 77.5 kB in 0s (1431 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_pppjn5g/libgpg-error0_1.38-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 binutils-x86-64-linux-gnu amd64 2.37-4 [1857 kB] Fetched 1857 kB in 0s (47.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwqeqgftp/binutils-x86-64-linux-gnu_2.37-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 debconf all 1.5.77 [144 kB] Fetched 144 kB in 0s (9153 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcgtj5wze/debconf_1.5.77_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libcrypt-dev amd64 1:4.4.25-1 [104 kB] Fetched 104 kB in 0s (3819 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.25-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpy_cpkkhj/libcrypt-dev_4.4.25-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libp11-kit0 amd64 0.23.22-1 [337 kB] Fetched 337 kB in 0s (8315 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy3qlhwpn/libp11-kit0_0.23.22-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Fetched 60.8 kB in 0s (1475 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ai1smj_/librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 binutils amd64 2.37-4 [61.6 kB] Fetched 61.6 kB in 0s (3327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp70lwjua5/binutils_2.37-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Fetched 273 kB in 0s (5263 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.39-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpbfydwvtm/libmagic-mgc_5.39-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 base-files amd64 11.1 [70.0 kB] Fetched 70.0 kB in 0s (3351 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1jky08bq/base-files_11.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Fetched 190 kB in 0s (511 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdqnr0pq9/libtirpc-dev_1.3.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libtasn1-6 amd64 4.16.0-2 [55.0 kB] Fetched 55.0 kB in 0s (2432 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyn_a9tw2/libtasn1-6_4.16.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libelf1 amd64 0.185-2 [172 kB] Fetched 172 kB in 0s (5309 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkxgrmyn9/libelf1_0.185-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 cmake-data all 3.18.4-2 [1725 kB] Fetched 1725 kB in 0s (50.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbdfuenq_/cmake-data_3.18.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Fetched 343 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhw48eh6/libarchive13_3.4.3-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppz5enu0c/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 m4 amd64 1.4.18-5 [204 kB] Fetched 204 kB in 0s (455 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp_dkx3lr/m4_1.4.18-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 mawk amd64 1.3.4.20200120-2 [112 kB] Fetched 112 kB in 0s (1146 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeajx_1gs/mawk_1.3.4.20200120-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Fetched 64.9 kB in 0s (774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0bs0617/libgdbm6_1.19-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 gcc-11-base amd64 11.2.0-2 [204 kB] Fetched 204 kB in 0s (2316 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpym0_794h/gcc-11-base_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 gcc-10 amd64 10.2.1-6 [17.0 MB] Fetched 17.0 MB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpblx96_za/gcc-10_10.2.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libcc1-0 amd64 11.2.0-2 [47.2 kB] Fetched 47.2 kB in 0s (2568 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx3hcbghu/libcc1-0_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libssl1.1 amd64 1.1.1k-1 [1553 kB] Fetched 1553 kB in 0s (18.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ljgexfn/libssl1.1_1.1.1k-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libtirpc-common all 1.3.2-2 [13.8 kB] Fetched 13.8 kB in 0s (770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8i0rxmdt/libtirpc-common_1.3.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Fetched 190 kB in 0s (4426 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpwadkilvw/zlib1g-dev_1.2.11.dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libselinux1 amd64 3.1-3 [88.1 kB] Fetched 88.1 kB in 0s (4924 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4_8pw86n/libselinux1_3.1-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Fetched 1537 kB in 0s (7398 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbmyxg9rz/libdpkg-perl_1.20.9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn0ypeeu5/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libtinfo6 amd64 6.2+20201114-2 [341 kB] Fetched 341 kB in 0s (9406 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4a8zs7co/libtinfo6_6.2+20201114-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 autoconf all 2.69-14 [313 kB] Fetched 313 kB in 0s (9324 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj4s6fs58/autoconf_2.69-14_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 debianutils amd64 5.1-1 [91.7 kB] Fetched 91.7 kB in 0s (5182 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp54saw5m/debianutils_5.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Fetched 77.1 kB in 0s (3546 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpytpazrpk/autotools-dev_20180224.1+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Fetched 26.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzhzrhkwq/intltool-debian_0.35.0+20060710.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 bash amd64 5.1-3+b1 [1417 kB] Fetched 1417 kB in 1s (1512 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkjhoc6rr/bash_5.1-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Fetched 232 kB in 0s (744 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfa3gool2/libldap-2.4-2_2.4.57+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libblkid1 amd64 2.36.1-8 [193 kB] Fetched 193 kB in 0s (415 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjn5h6q5m/libblkid1_2.36.1-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libunistring2 amd64 0.9.10-6 [384 kB] Fetched 384 kB in 1s (612 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnh8mvdn_/libunistring2_0.9.10-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Fetched 2012 kB in 0s (22.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpryflg3uh/libmpfr6_4.1.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 liblsan0 amd64 11.2.0-2 [888 kB] Fetched 888 kB in 0s (18.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbcczyfj4/liblsan0_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 bc amd64 1.07.1-2+b2 [109 kB] Fetched 109 kB in 0s (5918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt3987c2w/bc_1.07.1-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libsystemd0 amd64 247.9-1 [376 kB] Fetched 376 kB in 0s (8788 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwamsfr68/libsystemd0_247.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 dpkg amd64 1.20.9 [2472 kB] Fetched 2472 kB in 0s (62.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwyp1pztp/dpkg_1.20.9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Fetched 63.9 kB in 0s (526 kB/s) dpkg-name: info: moved 'libprocps8_2%3a3.3.17-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpgn20y0iy/libprocps8_3.3.17-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libnettle8 amd64 3.7.3-1 [270 kB] Fetched 270 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpex52xutv/libnettle8_3.7.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Fetched 151 kB in 0s (7865 kB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.0.6-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpkm5jubin/libjpeg62-turbo_2.0.6-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 dash amd64 0.5.11+git20210120+802ebd4-1 [116 kB] Fetched 116 kB in 0s (2689 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb1s3yqb5/dash_0.5.11+git20210120+802ebd4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgcrypt20 amd64 1.8.7-6 [563 kB] Fetched 563 kB in 0s (13.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp06cgrmg/libgcrypt20_1.8.7-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libncursesw6 amd64 6.2+20201114-2 [132 kB] Fetched 132 kB in 0s (7714 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsjmafjkc/libncursesw6_6.2+20201114-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 build-essential amd64 12.9 [7704 B] Fetched 7704 B in 0s (657 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo98wni9r/build-essential_12.9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 perl-modules-5.32 all 5.32.1-5 [2823 kB] Fetched 2823 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv8k0jnn2/perl-modules-5.32_5.32.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libudev1 amd64 247.9-1 [167 kB] Fetched 167 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxyx5dd4/libudev1_247.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 cpp amd64 4:10.2.1-1 [19.7 kB] Fetched 19.7 kB in 0s (1933 kB/s) dpkg-name: info: moved 'cpp_4%3a10.2.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp7porstkl/cpp_10.2.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 grep amd64 3.6-1 [398 kB] Fetched 398 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwldk0uw0/grep_3.6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Fetched 67.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5sa7adqh/libuchardet0_0.0.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 sed amd64 4.7-1 [310 kB] Fetched 310 kB in 0s (29.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ea_g6hv/sed_4.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libtsan0 amd64 11.2.0-2 [2082 kB] Fetched 2082 kB in 0s (34.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv4m2q0pl/libtsan0_11.2.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 login amd64 1:4.8.1-1 [655 kB] Fetched 655 kB in 0s (51.6 MB/s) dpkg-name: info: moved 'login_1%3a4.8.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpx62uu0f3/login_4.8.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libpcre3 amd64 2:8.39-13 [343 kB] Fetched 343 kB in 0s (10.9 MB/s) dpkg-name: info: moved 'libpcre3_2%3a8.39-13_amd64.deb' to '/srv/rebuilderd/tmp/tmp2dn2b3pt/libpcre3_8.39-13_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Fetched 2328 kB in 0s (56.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn5pxzc7n/libgcc-10-dev_10.2.1-6_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp5d4zta5r/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67 as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67 127.0.0.1 - - [27/Jul/2025 09:19:24] code 404, message File not found 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:46663 ./ InRelease 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:46663 ./ Release [462 B] 127.0.0.1 - - [27/Jul/2025 09:19:24] code 404, message File not found 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:46663 ./ Release.gpg 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:46663 ./ Packages [239 kB] Fetched 240 kB in 0s (1480 kB/s) Reading package lists... no package providing usr-is-merged found -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./gcc-11-base_11.2.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libc6_2.31-16_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libgcc-s1_11.2.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./mawk_1.3.4.20200120-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./base-files_11.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libtinfo6_6.2%2b20201114-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./debianutils_5.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./bash_5.1-3%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libgpg-error0_1.38-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libgcrypt20_1.8.7-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./liblz4-1_1.9.3-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./liblzma5_5.2.5-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libzstd1_1.4.8%2bdfsg-2.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libsystemd0_247.9-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./bsdutils_2.36.1-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libacl1_2.2.53-10_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libattr1_2.4.48-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libgmp10_6.2.1%2bdfsg-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libpcre2-8-0_10.36-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libselinux1_3.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./coreutils_8.32-4%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./libbz2-1.0_1.0.8-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:24] "GET /./zlib1g_1.2.11.dfsg-2_amd64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./libmount1_2.36.1-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./libsmartcols1_2.36.1-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./libudev1_247.9-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./libuuid1_2.36.1-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./util-linux_2.36.1-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./libdebconfclient0_0.260_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./base-passwd_3.5.51_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./init-system-helpers_1.60_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./libc-bin_2.31-16_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./ncurses-base_6.2%2b20201114-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./lsb-base_11.1.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:25] "GET /./sysvinit-utils_2.96-7_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67 127.0.0.1 - - [27/Jul/2025 09:19:26] code 404, message File not found 127.0.0.1 - - [27/Jul/2025 09:19:26] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:46663 ./ InRelease 127.0.0.1 - - [27/Jul/2025 09:19:26] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:46663 ./ Release 127.0.0.1 - - [27/Jul/2025 09:19:26] code 404, message File not found 127.0.0.1 - - [27/Jul/2025 09:19:26] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:46663 ./ Release.gpg Reading package lists... no package providing usr-is-merged found -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67 no package called usr-is-merged is installed -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [27/Jul/2025 09:19:33] "GET /./bsdextrautils_2.36.1-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:33] "GET /./libstdc%2b%2b6_11.2.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:33] "GET /./libuchardet0_0.0.7-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:33] "GET /./groff-base_1.22.4-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:33] "GET /./libgdbm6_1.19-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:33] "GET /./libpipeline1_1.5.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:33] "GET /./libseccomp2_2.5.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Jul/2025 09:19:33] "GET /./man-db_2.9.4-2_amd64.deb HTTP/1.1" 200 - 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I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp5d4zta5r/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67 Reading package lists... Building dependency tree... Reading state information... libattr1 is already the newest version (1:2.4.48-6). libsigsegv2 is already the newest version (2.13-1). libsigsegv2 set to manually installed. libc6 is already the newest version (2.31-16). libaec0 is already the newest version (1.0.5-2). libaec0 set to manually installed. libhdf5-hl-100 is already the newest version (1.10.6+repack-5). libhdf5-hl-100 set to manually installed. libseccomp2 is already the newest version (2.5.1-1). libseccomp2 set to manually installed. libpsl5 is already the newest version (0.21.0-1.2). libpsl5 set to manually installed. libubsan1 is already the newest version (11.2.0-2). libubsan1 set to manually installed. libexpat1 is already the newest version (2.2.10-2). libexpat1 set to manually installed. ncurses-bin is already the newest version (6.2+20201114-2). libgssapi-krb5-2 is already the newest version (1.18.3-6). libxml2 is already the newest version (2.9.10+dfsg-6.7). libxml2 set to manually installed. libc6-dev is already the newest version (2.31-16). libc6-dev set to manually installed. bsdextrautils is already the newest version (2.36.1-8). bsdextrautils set to manually installed. libperl5.32 is already the newest version (5.32.1-5). libperl5.32 set to manually installed. libkrb5support0 is already the newest version (1.18.3-6). base-passwd is already the newest version (3.5.51). automake is already the newest version (1:1.16.4-1). automake set to manually installed. libpam-modules is already the newest version (1.4.0-9). libkrb5-3 is already the newest version (1.18.3-6). libsmartcols1 is already the newest version (2.36.1-8). libboost1.74-dev is already the newest version (1.74.0-9). libboost1.74-dev set to manually installed. gettext-base is already the newest version (0.21-4). gettext-base set to manually installed. cmake is already the newest version (3.18.4-2). cmake set to manually installed. linux-libc-dev is already the newest version (5.10.46-4). linux-libc-dev set to manually installed. tar is already the newest version (1.34+dfsg-1). libgomp1 is already the newest version (11.2.0-2). libgomp1 set to manually installed. g++ is already the newest version (4:10.2.1-1). g++ set to manually installed. procps is already the newest version (2:3.3.17-5). procps set to manually installed. rpcsvc-proto is already the newest version (1.4.2-3). rpcsvc-proto set to manually installed. libsub-override-perl is already the newest version (0.09-2). libsub-override-perl set to manually installed. libaudit-common is already the newest version (1:3.0.5-1). sensible-utils is already the newest version (0.0.14). sensible-utils set to manually installed. autopoint is already the newest version (0.21-4). autopoint set to manually installed. libreadline8 is already the newest version (8.1-2). libreadline8 set to manually installed. libuv1 is already the newest version (1.40.0-2). libuv1 set to manually installed. gcc-10-base is already the newest version (10.2.1-6). gcc-10-base set to manually installed. libstdc++6 is already the newest version (11.2.0-2). libstdc++6 set to manually installed. debhelper is already the newest version (13.4+nmu1). debhelper set to manually installed. libacl1 is already the newest version (2.2.53-10). bzip2 is already the newest version (1.0.8-4). bzip2 set to manually installed. libitm1 is already the newest version (11.2.0-2). libitm1 set to manually installed. libcom-err2 is already the newest version (1.46.2-2). libcppunit-1.15-0 is already the newest version (1.15.1-2). libcppunit-1.15-0 set to manually installed. libpipeline1 is already the newest version (1.5.3-1). libpipeline1 set to manually installed. libatomic1 is already the newest version (11.2.0-2). libatomic1 set to manually installed. libdb5.3 is already the newest version (5.3.28+dfsg1-0.8). libhdf5-cpp-103-1 is already the newest version (1.10.6+repack-5). libhdf5-cpp-103-1 set to manually installed. libstdc++-10-dev is already the newest version (10.2.1-6). libstdc++-10-dev set to manually installed. libnghttp2-14 is already the newest version (1.43.0-1). libnghttp2-14 set to manually installed. libjsoncpp24 is already the newest version (1.9.4-4). libjsoncpp24 set to manually installed. libhdf5-dev is already the newest version (1.10.6+repack-5). libhdf5-dev set to manually installed. libhogweed6 is already the newest version (3.7.3-1). libhogweed6 set to manually installed. libnsl-dev is already the newest version (1.3.0-2). libnsl-dev set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. librhash0 is already the newest version (1.4.1-2). librhash0 set to manually installed. libjpeg62-turbo-dev is already the newest version (1:2.0.6-4). libjpeg62-turbo-dev set to manually installed. libcppunit-dev is already the newest version (1.15.1-2). libcppunit-dev set to manually installed. libgmp10 is already the newest version (2:6.2.1+dfsg-1). libmagic1 is already the newest version (1:5.39-3). libmagic1 set to manually installed. binutils-common is already the newest version (2.37-4). binutils-common set to manually installed. libhdf5-hl-fortran-100 is already the newest version (1.10.6+repack-5). libhdf5-hl-fortran-100 set to manually installed. libgcc-s1 is already the newest version (11.2.0-2). findutils is already the newest version (4.8.0-1). hostname is already the newest version (3.23). xz-utils is already the newest version (5.2.5-2). xz-utils set to manually installed. util-linux is already the newest version (2.36.1-8). libasan6 is already the newest version (11.2.0-2). libasan6 set to manually installed. libbinutils is already the newest version (2.37-4). libbinutils set to manually installed. liblzma5 is already the newest version (5.2.5-2). gzip is already the newest version (1.10-4). libdebconfclient0 is already the newest version (0.260). libuuid1 is already the newest version (2.36.1-8). libicu67 is already the newest version (67.1-7). libicu67 set to manually installed. libpam0g is already the newest version (1.4.0-9). gcc is already the newest version (4:10.2.1-1). gcc set to manually installed. libgdbm-compat4 is already the newest version (1.19-2). libgdbm-compat4 set to manually installed. zlib1g is already the newest version (1:1.2.11.dfsg-2). libfile-stripnondeterminism-perl is already the newest version (1.12.0-1). libfile-stripnondeterminism-perl set to manually installed. libpam-runtime is already the newest version (1.4.0-9). make is already the newest version (4.3-4.1). make set to manually installed. libsasl2-modules-db is already the newest version (2.1.27+dfsg-2.1). libsasl2-modules-db set to manually installed. libcurl4 is already the newest version (7.74.0-1.3+b1). libcurl4 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-4). libidn2-0 is already the newest version (2.3.2-2). libidn2-0 set to manually installed. file is already the newest version (1:5.39-3). file set to manually installed. libzstd1 is already the newest version (1.4.8+dfsg-2.1). libisl23 is already the newest version (0.23-1). libisl23 set to manually installed. init-system-helpers is already the newest version (1.60). libgfortran5 is already the newest version (11.2.0-2). libgfortran5 set to manually installed. dpkg-dev is already the newest version (1.20.9). dpkg-dev set to manually installed. libhdf5-103-1 is already the newest version (1.10.6+repack-5). libhdf5-103-1 set to manually installed. lsb-base is already the newest version (11.1.0). dwz is already the newest version (0.14-1). dwz set to manually installed. dh-strip-nondeterminism is already the newest version (1.12.0-1). dh-strip-nondeterminism set to manually installed. libcrypt1 is already the newest version (1:4.4.25-1). libncurses6 is already the newest version (6.2+20201114-2). libncurses6 set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. libhdf5-hl-cpp-100 is already the newest version (1.10.6+repack-5). libhdf5-hl-cpp-100 set to manually installed. libdebhelper-perl is already the newest version (13.4+nmu1). libdebhelper-perl set to manually installed. libc-bin is already the newest version (2.31-16). libhdf5-fortran-102 is already the newest version (1.10.6+repack-5). libhdf5-fortran-102 set to manually installed. libquadmath0 is already the newest version (11.2.0-2). libquadmath0 set to manually installed. bsdutils is already the newest version (1:2.36.1-8). libsasl2-2 is already the newest version (2.1.27+dfsg-2.1). libsasl2-2 set to manually installed. libtirpc3 is already the newest version (1.3.2-2). libtool is already the newest version (2.4.6-15). libtool set to manually installed. libbrotli1 is already the newest version (1.0.9-2+b2). libbrotli1 set to manually installed. libctf-nobfd0 is already the newest version (2.37-4). libctf-nobfd0 set to manually installed. libjpeg-dev is already the newest version (1:2.0.6-4). libjpeg-dev set to manually installed. liblz4-1 is already the newest version (1.9.3-2). libpam-modules-bin is already the newest version (1.4.0-9). gettext is already the newest version (0.21-4). gettext set to manually installed. readline-common is already the newest version (8.1-2). readline-common set to manually installed. hdf5-helpers is already the newest version (1.10.6+repack-5). hdf5-helpers set to manually installed. libsz2 is already the newest version (1.0.5-2). libsz2 set to manually installed. cpp-10 is already the newest version (10.2.1-6). cpp-10 set to manually installed. coreutils is already the newest version (8.32-4+b1). libcap-ng0 is already the newest version (0.7.9-2.2+b1). g++-10 is already the newest version (10.2.1-6). g++-10 set to manually installed. libaec-dev is already the newest version (1.0.5-2). libaec-dev set to manually installed. libffi7 is already the newest version (3.3-6). libffi7 set to manually installed. libk5crypto3 is already the newest version (1.18.3-6). libmpc3 is already the newest version (1.2.0-1). libmpc3 set to manually installed. man-db is already the newest version (2.9.4-2). man-db set to manually installed. libpcre2-8-0 is already the newest version (10.36-2). ncurses-base is already the newest version (6.2+20201114-2). libssh2-1 is already the newest version (1.9.0-3). libssh2-1 set to manually installed. libboost-dev is already the newest version (1.74.0.3). libboost-dev set to manually installed. sysvinit-utils is already the newest version (2.96-7). perl is already the newest version (5.32.1-5). perl set to manually installed. perl-base is already the newest version (5.32.1-5). libnsl2 is already the newest version (1.3.0-2). libkeyutils1 is already the newest version (1.6.1-2). diffutils is already the newest version (1:3.7-5). libmount1 is already the newest version (2.36.1-8). groff-base is already the newest version (1.22.4-6). groff-base set to manually installed. libctf0 is already the newest version (2.37-4). libctf0 set to manually installed. libgnutls30 is already the newest version (3.7.1-5). libgnutls30 set to manually installed. libaudit1 is already the newest version (1:3.0.5-1). libc-dev-bin is already the newest version (2.31-16). libc-dev-bin set to manually installed. libgpg-error0 is already the newest version (1.38-2). binutils-x86-64-linux-gnu is already the newest version (2.37-4). binutils-x86-64-linux-gnu set to manually installed. debconf is already the newest version (1.5.77). libcrypt-dev is already the newest version (1:4.4.25-1). libcrypt-dev set to manually installed. libp11-kit0 is already the newest version (0.23.22-1). libp11-kit0 set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b2). librtmp1 set to manually installed. binutils is already the newest version (2.37-4). binutils set to manually installed. libmagic-mgc is already the newest version (1:5.39-3). libmagic-mgc set to manually installed. base-files is already the newest version (11.1). libtirpc-dev is already the newest version (1.3.2-2). libtirpc-dev set to manually installed. libtasn1-6 is already the newest version (4.16.0-2). libtasn1-6 set to manually installed. libelf1 is already the newest version (0.185-2). libelf1 set to manually installed. cmake-data is already the newest version (3.18.4-2). cmake-data set to manually installed. libarchive13 is already the newest version (3.4.3-2+b1). libarchive13 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. m4 is already the newest version (1.4.18-5). m4 set to manually installed. mawk is already the newest version (1.3.4.20200120-2). libgdbm6 is already the newest version (1.19-2). libgdbm6 set to manually installed. gcc-11-base is already the newest version (11.2.0-2). gcc-10 is already the newest version (10.2.1-6). gcc-10 set to manually installed. libcc1-0 is already the newest version (11.2.0-2). libcc1-0 set to manually installed. libssl1.1 is already the newest version (1.1.1k-1). libtirpc-common is already the newest version (1.3.2-2). zlib1g-dev is already the newest version (1:1.2.11.dfsg-2). zlib1g-dev set to manually installed. libselinux1 is already the newest version (3.1-3). libdpkg-perl is already the newest version (1.20.9). libdpkg-perl set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libtinfo6 is already the newest version (6.2+20201114-2). autoconf is already the newest version (2.69-14). autoconf set to manually installed. debianutils is already the newest version (5.1-1). autotools-dev is already the newest version (20180224.1+nmu1). autotools-dev set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.5). intltool-debian set to manually installed. bash is already the newest version (5.1-3+b1). libldap-2.4-2 is already the newest version (2.4.57+dfsg-3). libldap-2.4-2 set to manually installed. libblkid1 is already the newest version (2.36.1-8). libunistring2 is already the newest version (0.9.10-6). libunistring2 set to manually installed. libmpfr6 is already the newest version (4.1.0-3). libmpfr6 set to manually installed. liblsan0 is already the newest version (11.2.0-2). liblsan0 set to manually installed. bc is already the newest version (1.07.1-2+b2). bc set to manually installed. libsystemd0 is already the newest version (247.9-1). dpkg is already the newest version (1.20.9). libprocps8 is already the newest version (2:3.3.17-5). libprocps8 set to manually installed. libnettle8 is already the newest version (3.7.3-1). libnettle8 set to manually installed. libjpeg62-turbo is already the newest version (1:2.0.6-4). libjpeg62-turbo set to manually installed. dash is already the newest version (0.5.11+git20210120+802ebd4-1). libgcrypt20 is already the newest version (1.8.7-6). libncursesw6 is already the newest version (6.2+20201114-2). libncursesw6 set to manually installed. build-essential is already the newest version (12.9). build-essential set to manually installed. perl-modules-5.32 is already the newest version (5.32.1-5). perl-modules-5.32 set to manually installed. libudev1 is already the newest version (247.9-1). cpp is already the newest version (4:10.2.1-1). cpp set to manually installed. grep is already the newest version (3.6-1). libuchardet0 is already the newest version (0.0.7-1). libuchardet0 set to manually installed. sed is already the newest version (4.7-1). libtsan0 is already the newest version (11.2.0-2). libtsan0 set to manually installed. login is already the newest version (1:4.8.1-1). libpcre3 is already the newest version (2:8.39-13). libgcc-10-dev is already the newest version (10.2.1-6). libgcc-10-dev set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67 (Reading database ... 30539 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67 I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67 I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.0WTBgr3y67... I: success in 53.3573 seconds Downloading dependency 135 of 199: diffutils:amd64=1:3.7-5 Downloading dependency 136 of 199: libmount1:amd64=2.36.1-8 Downloading dependency 137 of 199: groff-base:amd64=1.22.4-6 Downloading dependency 138 of 199: libctf0:amd64=2.37-4 Downloading dependency 139 of 199: libgnutls30:amd64=3.7.1-5 Downloading dependency 140 of 199: libaudit1:amd64=1:3.0.5-1 Downloading dependency 141 of 199: libc-dev-bin:amd64=2.31-16 Downloading dependency 142 of 199: libgpg-error0:amd64=1.38-2 Downloading dependency 143 of 199: binutils-x86-64-linux-gnu:amd64=2.37-4 Downloading dependency 144 of 199: debconf:amd64=1.5.77 Downloading dependency 145 of 199: libcrypt-dev:amd64=1:4.4.25-1 Downloading dependency 146 of 199: libp11-kit0:amd64=0.23.22-1 Downloading dependency 147 of 199: librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b2 Downloading dependency 148 of 199: binutils:amd64=2.37-4 Downloading dependency 149 of 199: libmagic-mgc:amd64=1:5.39-3 Downloading dependency 150 of 199: base-files:amd64=11.1 Downloading dependency 151 of 199: libtirpc-dev:amd64=1.3.2-2 Downloading dependency 152 of 199: libtasn1-6:amd64=4.16.0-2 Downloading dependency 153 of 199: libelf1:amd64=0.185-2 Downloading dependency 154 of 199: cmake-data:amd64=3.18.4-2 Downloading dependency 155 of 199: libarchive13:amd64=3.4.3-2+b1 Downloading dependency 156 of 199: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 157 of 199: m4:amd64=1.4.18-5 Downloading dependency 158 of 199: mawk:amd64=1.3.4.20200120-2 Downloading dependency 159 of 199: libgdbm6:amd64=1.19-2 Downloading dependency 160 of 199: gcc-11-base:amd64=11.2.0-2 Downloading dependency 161 of 199: gcc-10:amd64=10.2.1-6 Downloading dependency 162 of 199: libcc1-0:amd64=11.2.0-2 Downloading dependency 163 of 199: libssl1.1:amd64=1.1.1k-1 Downloading dependency 164 of 199: libtirpc-common:amd64=1.3.2-2 Downloading dependency 165 of 199: zlib1g-dev:amd64=1:1.2.11.dfsg-2 Downloading dependency 166 of 199: libselinux1:amd64=3.1-3 Downloading dependency 167 of 199: libdpkg-perl:amd64=1.20.9 Downloading dependency 168 of 199: dh-autoreconf:amd64=20 Downloading dependency 169 of 199: libtinfo6:amd64=6.2+20201114-2 Downloading dependency 170 of 199: autoconf:amd64=2.69-14 Downloading dependency 171 of 199: debianutils:amd64=5.1-1 Downloading dependency 172 of 199: autotools-dev:amd64=20180224.1+nmu1 Downloading dependency 173 of 199: intltool-debian:amd64=0.35.0+20060710.5 Downloading dependency 174 of 199: bash:amd64=5.1-3+b1 Downloading dependency 175 of 199: libldap-2.4-2:amd64=2.4.57+dfsg-3 Downloading dependency 176 of 199: libblkid1:amd64=2.36.1-8 Downloading dependency 177 of 199: libunistring2:amd64=0.9.10-6 Downloading dependency 178 of 199: libmpfr6:amd64=4.1.0-3 Downloading dependency 179 of 199: liblsan0:amd64=11.2.0-2 Downloading dependency 180 of 199: bc:amd64=1.07.1-2+b2 Downloading dependency 181 of 199: libsystemd0:amd64=247.9-1 Downloading dependency 182 of 199: dpkg:amd64=1.20.9 Downloading dependency 183 of 199: libprocps8:amd64=2:3.3.17-5 Downloading dependency 184 of 199: libnettle8:amd64=3.7.3-1 Downloading dependency 185 of 199: libjpeg62-turbo:amd64=1:2.0.6-4 Downloading dependency 186 of 199: dash:amd64=0.5.11+git20210120+802ebd4-1 Downloading dependency 187 of 199: libgcrypt20:amd64=1.8.7-6 Downloading dependency 188 of 199: libncursesw6:amd64=6.2+20201114-2 Downloading dependency 189 of 199: build-essential:amd64=12.9 Downloading dependency 190 of 199: perl-modules-5.32:amd64=5.32.1-5 Downloading dependency 191 of 199: libudev1:amd64=247.9-1 Downloading dependency 192 of 199: cpp:amd64=4:10.2.1-1 Downloading dependency 193 of 199: grep:amd64=3.6-1 Downloading dependency 194 of 199: libuchardet0:amd64=0.0.7-1 Downloading dependency 195 of 199: sed:amd64=4.7-1 Downloading dependency 196 of 199: libtsan0:amd64=11.2.0-2 Downloading dependency 197 of 199: login:amd64=1:4.8.1-1 Downloading dependency 198 of 199: libpcre3:amd64=2:8.39-13 Downloading dependency 199 of 199: libgcc-10-dev:amd64=10.2.1-6 env --chdir=/srv/rebuilderd/tmp/rebuilderdM7cCjZ/out DEB_BUILD_OPTIONS=parallel=4 LC_ALL=C.UTF-8 SOURCE_DATE_EPOCH=1629447704 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuild3MJwe9/debrebuild.sbuildrc.XZLYdyAsrEGh sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuild3MJwe9/debrebuild.tar.HsdQunRZqOrx --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/mapsembler2-ETtD7D --dsc-dir=mapsembler2-2.2.4+dfsg1 /srv/rebuilderd/tmp/rebuilderdM7cCjZ/inputs/mapsembler2_2.2.4+dfsg1-4.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3 (07 June 2025) on osuosl4-amd64.reproducible.osuosl.org +==============================================================================+ | mapsembler2 2.2.4+dfsg1-4 (amd64) Sun, 27 Jul 2025 09:20:18 +0000 | +==============================================================================+ Package: mapsembler2 Version: 2.2.4+dfsg1-4 Source Version: 2.2.4+dfsg1-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuild3MJwe9/debrebuild.tar.HsdQunRZqOrx to /srv/rebuilderd/tmp/tmp.sbuild.mbw8VBRdam... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sun, 27 Jul 2025 09:20:25 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdM7cCjZ/inputs/mapsembler2_2.2.4+dfsg1-4.dsc exists in /srv/rebuilderd/tmp/rebuilderdM7cCjZ/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 27 Jul 2025 09:20:27 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/mapsembler2-ETtD7D/resolver-rCogXC/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sun, 27 Jul 2025 09:20:31 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 arm64 kfreebsd-amd64 ppc64el s390x) +------------------------------------------------------------------------------+ | Build environment Sun, 27 Jul 2025 09:20:31 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.35+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.35-1 (2025-07-03) amd64 (x86_64) Toolchain package versions: binutils_2.37-4 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-16 libstdc++-10-dev_10.2.1-6 libstdc++6_11.2.0-2 linux-libc-dev_5.10.46-4 Package versions: autoconf_2.69-14 automake_1:1.16.4-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.51 bash_5.1-3+b1 bc_1.07.1-2+b2 binutils_2.37-4 binutils-common_2.37-4 binutils-x86-64-linux-gnu_2.37-4 bsdextrautils_2.36.1-8 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 cmake_3.18.4-2 cmake-data_3.18.4-2 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.4+nmu1 debianutils_5.1-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-dev_1.20.9 dwz_0.14-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-base_10.2.1-6 gcc-11-base_11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hdf5-helpers_1.10.6+repack-5 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libaec-dev_1.0.5-2 libaec0_1.0.5-2 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2+b1 libasan6_11.2.0-2 libatomic1_11.2.0-2 libattr1_1:2.4.48-6 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-4 libblkid1_2.36.1-8 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0-9 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libc-bin_2.31-16 libc-dev-bin_2.31-16 libc6_2.31-16 libc6-dev_2.31-16 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-2 libcom-err2_1.46.2-2 libcppunit-1.15-0_1.15.1-2 libcppunit-dev_1.15.1-2 libcrypt-dev_1:4.4.25-1 libcrypt1_1:4.4.25-1 libctf-nobfd0_2.37-4 libctf0_2.37-4 libcurl4_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.4+nmu1 libdpkg-perl_1.20.9 libelf1_0.185-2 libexpat1_2.2.10-2 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.2.1-6 libgcc-s1_11.2.0-2 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_11.2.0-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_11.2.0-2 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhdf5-103-1_1.10.6+repack-5 libhdf5-cpp-103-1_1.10.6+repack-5 libhdf5-dev_1.10.6+repack-5 libhdf5-fortran-102_1.10.6+repack-5 libhdf5-hl-100_1.10.6+repack-5 libhdf5-hl-cpp-100_1.10.6+repack-5 libhdf5-hl-fortran-100_1.10.6+repack-5 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libitm1_11.2.0-2 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libldap-2.4-2_2.4.57+dfsg-3 liblsan0_11.2.0-2 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libquadmath0_11.2.0-2 libreadline8_8.1-2 librhash0_1.4.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libssh2-1_1.9.0-3 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++6_11.2.0-2 libsub-override-perl_0.09-2 libsystemd0_247.9-1 libsz2_1.0.5-2 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-2 libubsan1_11.2.0-2 libuchardet0_0.0.7-1 libudev1_247.9-1 libunistring2_0.9.10-6 libuuid1_2.36.1-8 libuv1_1.40.0-2 libxml2_2.9.10+dfsg-6.7 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.46-4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 readline-common_8.1-2 rpcsvc-proto_1.4.2-3 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build Sun, 27 Jul 2025 09:20:31 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mapsembler2 Binary: mapsembler2 Architecture: amd64 arm64 kfreebsd-amd64 ppc64el s390x Version: 2.2.4+dfsg1-4 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Étienne Mollier Homepage: http://colibread.inria.fr/mapsembler2/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/mapsembler2 Vcs-Git: https://salsa.debian.org/med-team/mapsembler2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev Package-List: mapsembler2 deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el,s390x Checksums-Sha1: a9219b84bbe33544c2c239e148d2df5cd3593ba3 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz 34ee1b7875f7a387b82d5722e02250c03abacabb 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz Checksums-Sha256: 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz Files: 5c9add3cf5d9cfbd1c340efe580408e2 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz 79133654b404d6857bfc0a5c117242d1 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmEfaZkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp1RA/8CcQNm9Rt2n36IFvhbeN3yhIpNriR xBi4sVJkdTLb+7ho9T0/w7oCa/eKNzsFftal8xvlUeFBHdl1kiweFrEfg9s9fLPn f+yOmcHwKxIu5dBAGINz/xekJcATMH54hoDzoMo0VkvydkdPNxz587oyVTQDb9P2 4FmADNf6O6c2yTASy6nRh4/EYPmalzV3GK2yOedU+rloKwY6SpxqgrGrECTsH5yd /aHPuQrWSX0LzvHWgH+ra1bHZZHDQZGHmJkrB2lPHX+2JYFnICB1m84NQWTSSiIZ mxJXL1hX/bxnRg8QUSTwaf13rz0A4cccwBrGuXNb9v6R7ehA6RdYoRDnHP0Jd1OS eT0sSQQ4WQr/+awstq/5TRlFGdVWmu7wSNqHeLRJARtR9Mms04J+N6aOJpgzUt7T 2fQafMWGN6oscwYpX5AMZOaVaNeMSK3nBcYrXOMHe0I6/pKEjD46zzhCRwVrz+ar LJNVN8lFcNvnZ7KsGUcuYI/izkNlDyxgkYC6zwC5/cKNkuRcvgcV7TlU7WYlkuL3 32KnoYpZBIHH/HXAm5ChYNxwyQ0r6PLGT62HaKthOXYOYvkuUasmwpOsW8rQ6H3y qmlH90ggdGFtnRH/bAhuwERZZ0efOPVrjkd6J5f5aE+SUNn19kyPCq86pXRZrniW A31QqU7zRJANEEU= =qNGY -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify signature on ./mapsembler2_2.2.4+dfsg1-4.dsc since GnuPG is not installed dpkg-source: info: extracting mapsembler2 in /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1 dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying no_std_hash_redefinition.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying check_memory.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc11.patch Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/mapsembler2-ETtD7D/resolver-rCogXC/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sun, 27 Jul 2025 09:20:37 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/debian/control" ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1629447704 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1' dh_auto_configure --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core' -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.32.1") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build dh_auto_build --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -S/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities -B/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend.internal". Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend.internal". Scanning dependencies of target emphf_copyasis make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend.internal". make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/common.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_hem.cpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan.cpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan_mmap.cpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_seq.cpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/emphf_config.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/gen_synthetic_data.cpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_scan.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_seq.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/internal_memory_model.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mmap_memory_model.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf_hem.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_edge_list.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_vector.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/perfutils.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/ranked_bitpair_vector.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf.cpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_generic.hpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 6%] Built target emphf_copyasis [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 566 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 590 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function ‘gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); | ~^ ~~~~~~~~~~~~~~ | | | | int long int | %ld In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 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-I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 397 | snprintf (buffer, sizeof(buffer), "%lld", value); | ~~~^ ~~~~~ | | | | | long int | long long int | %ld [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o /usr/bin/ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 82%] Built target gatbcore-static make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools 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"/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend.internal". Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/depend.internal". Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend.internal". Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/depend.internal". Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend.internal". Dependee "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend.internal". Scanning dependencies of target dbginfo Scanning dependencies of target dbgh5 Scanning dependencies of target mapsembler2_extremities make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp /usr/bin/c++ -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 [ 96%] Linking CXX executable ../bin/None/dbginfo cd /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbginfo make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbgh5 [100%] Linking CXX executable mapsembler2_extremities /usr/bin/cmake -E cmake_link_script CMakeFiles/mapsembler2_extremities.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -o mapsembler2_extremities ext/gatb-core/lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [100%] Built target mapsembler2_extremities make[3]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -E cmake_progress_start /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles 0 make[2]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' dh_auto_build --sourcedirectory=mapsembler2_extend -- k=29 cd mapsembler2_extend && make -j4 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function ‘void Bank::init(char**, int)’: ../minia/Bank.cpp:282:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryBank::open(bool)’: ../minia/Bank.cpp:713:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryReads::open(bool)’: ../minia/Bank.cpp:798:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘int KmersBuffer::readkmers()’: ../minia/Bank.cpp:988:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bloom.cpp: In member function ‘void Bloom::load(char*)’: ../minia/Bloom.cpp:256:51: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | printf("loading bloom filter from file, nelem %lli \n",nchar); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Bloom.cpp:257:7: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)’: ../minia/Terminator.cpp:275:105: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 275 | fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp:303:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Terminator.cpp:303:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)’: ../minia/Terminator.cpp:337:38: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Set.cpp: In member function ‘void AssocPairedSet::load(char*)’: ../minia/Set.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function ‘uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)’: ../minia/Utils.cpp:434:100: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 434 | if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); | ~~~^ ~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Utils.cpp: In instantiation of ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:167:85: required from here ../minia/Utils.cpp:121:53: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Utils.cpp:121:79: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:187:14: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘char* return_file_name(const char*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp: In function ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’: ../minia/SortingCount.cpp:56:15: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp:45:25: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:867, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 1280 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Debloom.cpp: In function ‘int debloom(int, int)’: ../minia/Debloom.cpp:154:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 154 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:158:26: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 158 | fprintf(stderr,"\n%lli kmers written\n",cc); | ~~~^ ~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:191:76: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 191 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:195:58: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:195:65: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp:208:34: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 208 | fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:225:81: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 225 | fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Debloom.cpp: In function ‘Set* load_false_positives()’: ../minia/Debloom.cpp:280:112: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 280 | if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Debloom.cpp:284:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 284 | fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSet*)’: ../minia/Debloom.cpp:445:50: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:448:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 448 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSetCascading4*)’: ../minia/Debloom.cpp:465:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 465 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function ‘void end_debloom_partition(bool)’: ../minia/Debloom.cpp:29:11: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial mapsembler_extend.cpp: In function ‘int main(int, char**)’: mapsembler_extend.cpp:145:50: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 145 | printf(" Will use genome_size=%llu\n", genome_size); //TODO format | ~~~^ ~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long unsigned int | %lu mapsembler_extend.cpp:320:76: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' dh_auto_build --sourcedirectory=kissreads_graph -- k=29 cd kissreads_graph && make -j4 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function ‘void DBG::index_nodes()’: DeBruijnGraph.cpp:952:41: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 952 | printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 In file included from /usr/include/string.h:495, from Fragment.h:2, from DeBruijnGraph.h:8, from DeBruijnGraph.cpp:8: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘void DBG::_ZN3DBG15set_firstNodeIdEPc.part.0(char*)’ at DeBruijnGraph.cpp:373:29: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DeBruijnGraph.cpp: In member function ‘void DBG::_ZN3DBG15set_firstNodeIdEPc.part.0(char*)’: DeBruijnGraph.cpp:373:29: note: length computed here 373 | if(set_line!=NULL) strncpy(set_line,firstNodeId,strlen(firstNodeId)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFind(HashTable*, u_long)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFindLast(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1232 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFirstBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1296 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashNextBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1306 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)’: read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1413 | fread(szMagicKey, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro ‘READ_UL’ 1422 | READ_UL(fp, ht->cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro ‘READ_UL’ 1423 | READ_UL(fp, ht->cItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro ‘READ_UL’ 1424 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro ‘READ_UL’ 1427 | READ_UL(fp, cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1429 | fread(rgchKeys, 1, cchKey, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro ‘READ_UL’ 1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘u_long SparseRead(FILE*, SparseBin**)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro ‘READ_UL’ 628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro ‘READ_UL’ 633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/read_coherence.cpp: In function ‘char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)’: read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", | ~^ | | | unsigned int 989 | current_read_group, number_substitutions, | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", | ~^ | | | unsigned int 1003 | current_read_group, substarters[*nb_consensuses], | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/interface_libchash.cpp: In function ‘void iterate_and_fill_offsets(hash_t)’: read_coherence_mapsembler/interface_libchash.cpp:408:36: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li read_coherence_mapsembler/interface_libchash.cpp:408:54: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 ReadMapper.cpp: In function ‘uint64_t map_reads(Bank*, std::vector)’: ReadMapper.cpp:38:31: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:38:56: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:23: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:48: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial make[2]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads_graph' dh_auto_build --sourcedirectory=kissreads -- k=29 cd kissreads && make -j4 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function ‘HashFind’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFindLast’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFirstBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1290:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashNextBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1300:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashDoLoad’: src/libchash.c:1407:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ src/libchash.c: In function ‘SparseRead’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:3: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1/kissreads' make[1]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_install make[1]: Entering directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb'. dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg1-4_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../mapsembler2_2.2.4+dfsg1-4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-07-27T09:21:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 27 Jul 2025 09:22:00 +0000 | +------------------------------------------------------------------------------+ mapsembler2_2.2.4+dfsg1-4_amd64.changes: ---------------------------------------- Format: 1.8 Date: Fri, 20 Aug 2021 10:21:44 +0200 Source: mapsembler2 Binary: mapsembler2 mapsembler2-dbgsym Architecture: amd64 Version: 2.2.4+dfsg1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: mapsembler2 - bioinformatics targeted assembly software Closes: 984226 Changes: mapsembler2 (2.2.4+dfsg1-4) unstable; urgency=medium . * d/salsa-ci.yml: disable i386 build and reprotest in Salsa CI * d/control: updated uploader address * d/control: standard version 4.5.1 * d/mans/mapsembler2_kissreads.1: fix typo-in-manual-page * spelling.patch: fix spelling-error-in-binary * add gcc11.patch (Closes: #984226) * d/s/lintian-overrides: override notices about components not sent, or otherwise missing about upstream, who is inactive for a while. * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 1c3ac5a49bde8cc0f01e5f201da9cfcdf7a72765 2463440 mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb 8dd0d5ba5cb6de5960f35d7656f8ed07fd3b0b7f 6403 mapsembler2_2.2.4+dfsg1-4_amd64.buildinfo 8bb642ba5f03c242c9b60f775d4d84a8987f4675 724296 mapsembler2_2.2.4+dfsg1-4_amd64.deb Checksums-Sha256: 029251ab16b15a964b8c1aa1dedf670b9f2d362b8d1e2e6297c49bdedc09deef 2463440 mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb 36f7bbdd8690c17237c87cfc0c74a25eb38d5e650225362184879a398eea5aaa 6403 mapsembler2_2.2.4+dfsg1-4_amd64.buildinfo ba7980d45d97d8ed4ffed1a41a599172768992a5b58e989a8d79d74d76e7528c 724296 mapsembler2_2.2.4+dfsg1-4_amd64.deb Files: 2d1f862dd7fd6afbf0e89aee5d8357fb 2463440 debug optional mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb 3dbc51dd67f8a93e528694dbd6a7cf23 6403 science optional mapsembler2_2.2.4+dfsg1-4_amd64.buildinfo 7de271e8b0c4cb963f9695e6cd6ae6f6 724296 science optional mapsembler2_2.2.4+dfsg1-4_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 27 Jul 2025 09:22:00 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mapsembler2 Binary: mapsembler2 mapsembler2-dbgsym Architecture: amd64 Version: 2.2.4+dfsg1-4 Checksums-Md5: 2d1f862dd7fd6afbf0e89aee5d8357fb 2463440 mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb 7de271e8b0c4cb963f9695e6cd6ae6f6 724296 mapsembler2_2.2.4+dfsg1-4_amd64.deb Checksums-Sha1: 1c3ac5a49bde8cc0f01e5f201da9cfcdf7a72765 2463440 mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb 8bb642ba5f03c242c9b60f775d4d84a8987f4675 724296 mapsembler2_2.2.4+dfsg1-4_amd64.deb Checksums-Sha256: 029251ab16b15a964b8c1aa1dedf670b9f2d362b8d1e2e6297c49bdedc09deef 2463440 mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb ba7980d45d97d8ed4ffed1a41a599172768992a5b58e989a8d79d74d76e7528c 724296 mapsembler2_2.2.4+dfsg1-4_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 27 Jul 2025 09:21:59 +0000 Build-Path: /build/mapsembler2-ETtD7D/mapsembler2-2.2.4+dfsg1 Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.4-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1), base-passwd (= 3.5.51), bash (= 5.1-3+b1), bc (= 1.07.1-2+b2), binutils (= 2.37-4), binutils-common (= 2.37-4), binutils-x86-64-linux-gnu (= 2.37-4), bsdextrautils (= 2.36.1-8), bsdutils (= 1:2.36.1-8), build-essential (= 12.9), bzip2 (= 1.0.8-4), cmake (= 3.18.4-2), cmake-data (= 3.18.4-2), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.4+nmu1), debianutils (= 5.1-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gcc-11-base (= 11.2.0-2), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hdf5-helpers (= 1.10.6+repack-5), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libaec-dev (= 1.0.5-2), libaec0 (= 1.0.5-2), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.4.3-2+b1), libasan6 (= 11.2.0-2), libatomic1 (= 11.2.0-2), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0.5-1), libaudit1 (= 1:3.0.5-1), libbinutils (= 2.37-4), libblkid1 (= 2.36.1-8), libboost-dev (= 1.74.0.3), libboost1.74-dev (= 1.74.0-9), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-16), libc-dev-bin (= 2.31-16), libc6 (= 2.31-16), libc6-dev (= 2.31-16), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 11.2.0-2), libcom-err2 (= 1.46.2-2), libcppunit-1.15-0 (= 1.15.1-2), libcppunit-dev (= 1.15.1-2), libcrypt-dev (= 1:4.4.25-1), libcrypt1 (= 1:4.4.25-1), libctf-nobfd0 (= 2.37-4), libctf0 (= 2.37-4), libcurl4 (= 7.74.0-1.3+b1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.4+nmu1), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libexpat1 (= 2.2.10-2), libffi7 (= 3.3-6), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 11.2.0-2), libgcrypt20 (= 1.8.7-6), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran5 (= 11.2.0-2), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.1-5), libgomp1 (= 11.2.0-2), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-6), libhdf5-103-1 (= 1.10.6+repack-5), libhdf5-cpp-103-1 (= 1.10.6+repack-5), libhdf5-dev (= 1.10.6+repack-5), libhdf5-fortran-102 (= 1.10.6+repack-5), libhdf5-hl-100 (= 1.10.6+repack-5), libhdf5-hl-cpp-100 (= 1.10.6+repack-5), libhdf5-hl-fortran-100 (= 1.10.6+repack-5), libhogweed6 (= 3.7.3-1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.23-1), libitm1 (= 11.2.0-2), libjpeg-dev (= 1:2.0.6-4), libjpeg62-turbo (= 1:2.0.6-4), libjpeg62-turbo-dev (= 1:2.0.6-4), libjsoncpp24 (= 1.9.4-4), libk5crypto3 (= 1.18.3-6), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-6), libkrb5support0 (= 1.18.3-6), libldap-2.4-2 (= 2.4.57+dfsg-3), liblsan0 (= 11.2.0-2), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-8), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20201114-2), libncursesw6 (= 6.2+20201114-2), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-9), libpam-modules-bin (= 1.4.0-9), libpam-runtime (= 1.4.0-9), libpam0g (= 1.4.0-9), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-5), libpipeline1 (= 1.5.3-1), libprocps8 (= 2:3.3.17-5), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 11.2.0-2), libreadline8 (= 8.1-2), librhash0 (= 1.4.1-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.36.1-8), libssh2-1 (= 1.9.0-3), libssl1.1 (= 1.1.1k-1), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 11.2.0-2), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.9-1), libsz2 (= 1.0.5-2), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-2), libubsan1 (= 11.2.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 247.9-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.36.1-8), libuv1 (= 1.40.0-2), libxml2 (= 2.9.10+dfsg-6.7), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.46-4), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), patch (= 2.7.6-7), perl (= 5.32.1-5), perl-base (= 5.32.1-5), perl-modules-5.32 (= 5.32.1-5), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-5), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-3), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), util-linux (= 2.36.1-8), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1629447704" +------------------------------------------------------------------------------+ | Package contents Sun, 27 Jul 2025 09:22:01 +0000 | +------------------------------------------------------------------------------+ mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb ------------------------------------------ new Debian package, version 2.0. size 2463440 bytes: control archive=764 bytes. 522 bytes, 12 lines control 512 bytes, 5 lines md5sums Package: mapsembler2-dbgsym Source: mapsembler2 Version: 2.2.4+dfsg1-4 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 2598 Depends: mapsembler2 (= 2.2.4+dfsg1-4) Section: debug Priority: optional Description: debug symbols for mapsembler2 Build-Ids: 97a6a1059aa8b230685ad919192dfe9aa205d962 a3f68540301378804f910445c5a618f1d3d96731 ee7e63186a00a8ba0dc71a27c9b0dd7b17d070e5 f87177f203744ad02eee36b363ac5b2d3f8a3106 drwxr-xr-x root/root 0 2021-08-20 08:21 ./ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/97/ -rw-r--r-- root/root 749144 2021-08-20 08:21 ./usr/lib/debug/.build-id/97/a6a1059aa8b230685ad919192dfe9aa205d962.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/a3/ -rw-r--r-- root/root 368656 2021-08-20 08:21 ./usr/lib/debug/.build-id/a3/f68540301378804f910445c5a618f1d3d96731.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/ee/ -rw-r--r-- root/root 1381904 2021-08-20 08:21 ./usr/lib/debug/.build-id/ee/7e63186a00a8ba0dc71a27c9b0dd7b17d070e5.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/f8/ -rw-r--r-- root/root 95584 2021-08-20 08:21 ./usr/lib/debug/.build-id/f8/7177f203744ad02eee36b363ac5b2d3f8a3106.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 46376 2021-08-20 08:21 ./usr/lib/debug/.dwz/x86_64-linux-gnu/mapsembler2.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-20 08:21 ./usr/share/doc/mapsembler2-dbgsym -> mapsembler2 mapsembler2_2.2.4+dfsg1-4_amd64.deb ----------------------------------- new Debian package, version 2.0. size 724296 bytes: control archive=1836 bytes. 1396 bytes, 27 lines control 2274 bytes, 28 lines md5sums Package: mapsembler2 Version: 2.2.4+dfsg1-4 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1283 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), bc Section: science Priority: optional Homepage: http://colibread.inria.fr/mapsembler2/ Description: bioinformatics targeted assembly software Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters). . It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice. . Mapsembler2 may be used for (not limited to): - Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set drwxr-xr-x root/root 0 2021-08-20 08:21 ./ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/bin/ lrwxrwxrwx root/root 0 2021-08-20 08:21 ./usr/bin/mapsembler2_extend -> mapsembler_extend -rwxr-xr-x root/root 358768 2021-08-20 08:21 ./usr/bin/mapsembler2_extremities -rwxr-xr-x root/root 75928 2021-08-20 08:21 ./usr/bin/mapsembler2_kissreads -rwxr-xr-x root/root 137472 2021-08-20 08:21 ./usr/bin/mapsembler2_kissreads_graph -rwxr-xr-x root/root 190920 2021-08-20 08:21 ./usr/bin/mapsembler_extend -rwxr-xr-x root/root 9585 2021-08-20 08:21 ./usr/bin/run_mapsembler2_pipeline drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/doc/mapsembler2/ -rw-r--r-- root/root 52 2014-09-11 15:09 ./usr/share/doc/mapsembler2/EXAMPLE.md -rw-r--r-- root/root 218 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.Debian -rw-r--r-- root/root 5260 2014-09-11 15:09 ./usr/share/doc/mapsembler2/README.md.gz -rw-r--r-- root/root 268 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.source -rw-r--r-- root/root 278 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.test -rw-r--r-- root/root 174 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.test_data -rw-r--r-- root/root 2206 2021-08-20 08:21 ./usr/share/doc/mapsembler2/changelog.Debian.gz -rw-r--r-- root/root 4017 2021-08-20 08:21 ./usr/share/doc/mapsembler2/copyright drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/doc/mapsembler2/examples/ -rw-r--r-- root/root 174 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/README.test_data -rw-r--r-- root/root 229216 2021-08-20 08:21 ./usr/share/doc/mapsembler2/examples/reads1.fa.gz -rw-r--r-- root/root 229914 2021-08-20 08:21 ./usr/share/doc/mapsembler2/examples/reads2.fa.gz -rw-r--r-- root/root 3853 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-mapsembler2_extremities.out.fa -rw-r--r-- root/root 3537 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-reads1_coherent_k_31_c_5_t_1.fasta -rw-r--r-- root/root 0 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-reads1_uncoherent_k_31_c_5_t_1.fasta -rw-r--r-- root/root 25386 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-res_k_31_c_5_t_3_modified_and_covered.json -rw-r--r-- root/root 78 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-res_mapsembler_k_31_c_2_t_1.fasta -rw-r--r-- root/root 83 2014-08-11 09:29 ./usr/share/doc/mapsembler2/examples/starter.fa -rw-r--r-- root/root 2382 2020-10-16 16:38 ./usr/share/doc/mapsembler2/run-unit-test drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/man/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2021-08-20 08:21 ./usr/share/man/man1/mapsembler2_extend.1.gz -> mapsembler_extend.1.gz -rw-r--r-- root/root 742 2021-08-20 08:21 ./usr/share/man/man1/mapsembler2_extremities.1.gz -rw-r--r-- root/root 1316 2021-08-20 08:21 ./usr/share/man/man1/mapsembler2_kissreads.1.gz -rw-r--r-- root/root 878 2021-08-20 08:21 ./usr/share/man/man1/mapsembler2_kissreads_graph.1.gz -rw-r--r-- root/root 1033 2021-08-20 08:21 ./usr/share/man/man1/mapsembler_extend.1.gz -rw-r--r-- root/root 1022 2021-08-20 08:21 ./usr/share/man/man1/run_mapsembler2_pipeline.1.gz +------------------------------------------------------------------------------+ | Post Build Sun, 27 Jul 2025 09:22:02 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 27 Jul 2025 09:22:02 +0000 | +------------------------------------------------------------------------------+ Purging /build/mapsembler2-ETtD7D Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 27 Jul 2025 09:22:04 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 334708 Build-Time: 82 Distribution: unstable Host Architecture: amd64 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdM7cCjZ/inputs/mapsembler2_2.2.4+dfsg1-4.dsc Machine Architecture: amd64 Package: mapsembler2 Package-Time: 101 Source-Version: 2.2.4+dfsg1-4 Space: 334708 Status: successful Version: 2.2.4+dfsg1-4 -------------------------------------------------------------------------------- Finished at 2025-07-27T09:21:59Z Build needed 00:01:41, 334708k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdM7cCjZ/out checking mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb: size differs for mapsembler2-dbgsym_2.2.4+dfsg1-4_amd64.deb