=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdlLGiNZ/inputs/unicycler_0.5.1+dfsg-3_amd64.buildinfo Source: unicycler Version: 0.5.1+dfsg-3 rebuilderd-worker node: osuosl4-amd64 +------------------------------------------------------------------------------+ | Downloading sources Mon, 28 Jul 2025 09:02:11 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [168 kB] Get:2 https://deb.debian.org/debian sid InRelease [213 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 2s (10.0 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.1%2bdfsg-3.dsc' unicycler_0.5.1+dfsg-3.dsc 2389 SHA256:edf630a02487047a5f7a8ed8120038040c163b2e43436f1971743b93683bbf36 'https://deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.1%2bdfsg.orig.tar.xz' unicycler_0.5.1+dfsg.orig.tar.xz 14771244 SHA256:e4ff9b7bb236d3c1b43e97318f09d781428f7ae917b06dfe505c0d8da3ffad69 'https://deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.1%2bdfsg-3.debian.tar.xz' unicycler_0.5.1+dfsg-3.debian.tar.xz 12868 SHA256:399081dcea5f5dba5d2a72c51fd452c9e7fc265a3d8a20d003a7fcda3c4abd24 e4ff9b7bb236d3c1b43e97318f09d781428f7ae917b06dfe505c0d8da3ffad69 unicycler_0.5.1+dfsg.orig.tar.xz 399081dcea5f5dba5d2a72c51fd452c9e7fc265a3d8a20d003a7fcda3c4abd24 unicycler_0.5.1+dfsg-3.debian.tar.xz edf630a02487047a5f7a8ed8120038040c163b2e43436f1971743b93683bbf36 unicycler_0.5.1+dfsg-3.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Mon, 28 Jul 2025 09:02:15 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdlLGiNZ/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdlLGiNZ/inputs/unicycler_0.5.1+dfsg-3_amd64.buildinfo Rebuilding unicycler=0.5.1+dfsg-3 in /srv/rebuilderd/tmp/rebuilderdlLGiNZ/inputs now. /srv/rebuilderd/tmp/rebuilderdlLGiNZ/inputs/unicycler_0.5.1+dfsg-3_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/unicycler-0.5.1+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid InRelease [205 kB] Get:2 http://snapshot.debian.org/archive/debian/20250207T152124Z sid InRelease [205 kB] Get:3 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 Packages [10.0 MB] Get:4 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 Packages [10.0 MB] Fetched 20.5 MB in 2s (10.0 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250203T090921Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20250207T152124Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libhwasan0 amd64 14.2.0-16 [1489 kB] Fetched 1489 kB in 0s (19.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwkauplnu/libhwasan0_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Fetched 10.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeoilbfki/libtirpc-common_1.3.4+ds-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dash amd64 0.5.12-11 [95.5 kB] Fetched 95.5 kB in 0s (2866 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwpmmkbno/dash_0.5.12-11_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Fetched 241 kB in 0s (6317 kB/s) dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.10-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpxcpo5kqp/libx11-xcb1_1.8.10-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [28.6 kB] Fetched 28.6 kB in 0s (1633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd23s8m5n/dconf-gsettings-backend_0.40.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB] Fetched 74.0 kB in 0s (2921 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxysr3vx6/ncbi-vdb-data_3.0.9+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Fetched 107 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ddrljq6/libxcb-dri3-0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB] Fetched 317 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqzknlbja/fontconfig-config_2.15.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Fetched 26.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4cfmbept/libfribidi0_1.0.16-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Fetched 1440 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoh9g3byy/libxerces2-java_2.12.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Fetched 144 kB in 0s (6170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5afs2w7k/libslf4j-java_1.7.32-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgtk-3-common all 3.24.48-4 [4873 kB] Fetched 4873 kB in 0s (60.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9z6hb4fq/libgtk-3-common_3.24.48-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (58.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpik6bg50m/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dpkg-dev all 1.22.14 [1334 kB] Fetched 1334 kB in 0s (36.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm061l3ec/dpkg-dev_1.22.14_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Fetched 1436 B in 0s (141 kB/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppe3__rvt/gcc-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libspoa7.0.0 amd64 4.1.4-2+b1 [74.1 kB] Fetched 74.1 kB in 0s (3907 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpes10sns8/libspoa7.0.0_4.1.4-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 mawk amd64 1.3.4.20240905-1 [138 kB] Fetched 138 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglt2z09_/mawk_1.3.4.20240905-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB] Fetched 20.2 kB in 0s (1002 kB/s) dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmp7w791qn7/libxfixes3_6.0.0-2+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsemanage2 amd64 3.7-2.1 [91.2 kB] Fetched 91.2 kB in 0s (4088 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmzx5_w85/libsemanage2_3.7-2.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 fontconfig amd64 2.15.0-2 [463 kB] Fetched 463 kB in 0s (39.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpndjuelc0/fontconfig_2.15.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Fetched 4840 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpqtnvr4x0/cpp-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcc1-0 amd64 14.2.0-16 [42.8 kB] Fetched 42.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtu5_8kn/libcc1-0_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdrm-common all 2.4.123-1 [8084 B] Fetched 8084 B in 0s (228 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92816_e0/libdrm-common_2.4.123-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsystemd0 amd64 257.2-3 [450 kB] Fetched 450 kB in 0s (6659 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2lbq7wln/libsystemd0_257.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl8vrfltj/gzip_1.13-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Fetched 256 kB in 0s (8992 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmk_za0ny/libcommons-jexl2-java_2.1.1-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 librhino-java all 1.7.15-1 [1382 kB] Fetched 1382 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_j87d84l/librhino-java_1.7.15-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libncursesw6 amd64 6.5+20250125-2 [135 kB] Fetched 135 kB in 0s (692 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvsdjq6rl/libncursesw6_6.5+20250125-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Fetched 50.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf39pjymz/libgdbm-compat4t64_1.24-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Fetched 11.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmc1fec8y/hicolor-icon-theme_0.18-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Fetched 68.9 kB in 0s (6765 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpog1_24y7/libuchardet0_0.0.8-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgxspd2d7/python3-inflect_7.3.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB] Fetched 113 kB in 0s (6517 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4zsl5eks/libxkbcommon0_1.7.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Fetched 1974 kB in 0s (46.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7m1b_m5b/libpython3.12-stdlib_3.12.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libstdc++6 amd64 14.2.0-16 [713 kB] Fetched 713 kB in 0s (19.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1l3nb7hr/libstdc++6_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libglapi-mesa amd64 24.3.4-3 [38.5 kB] Fetched 38.5 kB in 0s (1500 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv78x6hb0/libglapi-mesa_24.3.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-joblib all 1.3.2-6 [216 kB] Fetched 216 kB in 0s (8131 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9gguy6dz/python3-joblib_1.3.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Fetched 19.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeu9duc9o/libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 ca-certificates-java all 20240118 [11.6 kB] Fetched 11.6 kB in 0s (666 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3t17mzyh/ca-certificates-java_20240118_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Fetched 248 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphqkaojbl/libpixman-1-0_0.44.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 debhelper all 13.24.1 [920 kB] Fetched 920 kB in 0s (65.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps__xq6gv/debhelper_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 passwd amd64 1:4.16.0-7 [1233 kB] Fetched 1233 kB in 0s (23.3 MB/s) dpkg-name: info: moved 'passwd_1%3a4.16.0-7_amd64.deb' to '/srv/rebuilderd/tmp/tmp0m_uypmi/passwd_4.16.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpam-systemd amd64 257.2-3 [293 kB] Fetched 293 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_gyeps3/libpam-systemd_257.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 samtools amd64 1.20-3 [653 kB] Fetched 653 kB in 0s (8844 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ib08mz_/samtools_1.20-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 openjdk-21-jdk-headless amd64 21.0.6+7-1 [82.8 MB] Fetched 82.8 MB in 1s (122 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp66qvyjcn/openjdk-21-jdk-headless_21.0.6+7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 mount amd64 2.40.4-3 [155 kB] Fetched 155 kB in 0s (5975 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwwav3cn/mount_2.40.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 default-jre amd64 2:1.21-76 [1068 B] Fetched 1068 B in 0s (95.8 kB/s) dpkg-name: info: moved 'default-jre_2%3a1.21-76_amd64.deb' to '/srv/rebuilderd/tmp/tmp8s3yrkuw/default-jre_1.21-76_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcairo-gobject2 amd64 1.18.2-2 [130 kB] Fetched 130 kB in 0s (4946 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo_4gnbjs/libcairo-gobject2_1.18.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1r_f8p4u/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB] Fetched 44.2 kB in 0s (2302 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpluoe0isu/libavahi-common3_0.8-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 openjdk-21-jdk amd64 21.0.6+7-1 [3434 kB] Fetched 3434 kB in 0s (57.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7kbtfa9/openjdk-21-jdk_21.0.6+7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Fetched 27.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpxn270ioh/libxdmcp6_1.1.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libtool all 2.5.4-3 [539 kB] Fetched 539 kB in 0s (44.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprujk_e54/libtool_2.5.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Fetched 169 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1h0qvyle/libreadline8t64_8.2-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 base-files amd64 13.6 [72.8 kB] Fetched 72.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw00amaea/base-files_13.6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [311 kB] Fetched 311 kB in 0s (28.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvmgqgpi3/libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Fetched 9092 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7t3iz61e/libkeyutils1_1.6.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Fetched 840 kB in 0s (61.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8n0mdzh_/fonts-dejavu-core_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Fetched 78.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxi6_2%3a1.8.2-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpc561fp11/libxi6_1.8.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Fetched 489 kB in 0s (39.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptbzypkg6/fonts-dejavu-mono_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Fetched 9952 B in 0s (786 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnfg41z1b/libpython3-stdlib_3.13.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Fetched 21.8 kB in 0s (1728 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5_cf_o7t/libssw0_1.1-15+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libvulkan1 amd64 1.4.304.0-1 [129 kB] Fetched 129 kB in 0s (6569 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdtzj9rto/libvulkan1_1.4.304.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Fetched 15.2 MB in 0s (96.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbyt9zw8e/ncbi-blast+_2.16.0+ds-6+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 g++-14 amd64 14.2.0-16 [21.8 kB] Fetched 21.8 kB in 0s (1964 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ngewy5b/g++-14_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libasan8 amd64 14.2.0-16 [2729 kB] Fetched 2729 kB in 0s (60.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0esp2rs/libasan8_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Fetched 813 kB in 0s (59.7 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.10-2_amd64.deb' to '/srv/rebuilderd/tmp/tmp091y4gsd/libx11-6_1.8.10-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gcc-14-base amd64 14.2.0-16 [48.9 kB] Fetched 48.9 kB in 0s (3306 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq30dx32n/gcc-14-base_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Fetched 425 kB in 0s (34.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6x9e6_tz/libp11-kit0_0.25.5-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Fetched 699 kB in 0s (53.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppewd1kvc/libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libatk1.0-0t64 amd64 2.55.2-1 [51.4 kB] Fetched 51.4 kB in 0s (3976 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoal_xatx/libatk1.0-0t64_2.55.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Fetched 129 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqj5651r0/libidn2-0_2.3.7-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libatk-bridge2.0-0t64 amd64 2.55.2-1 [68.1 kB] Fetched 68.1 kB in 0s (3605 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpld2ghago/libatk-bridge2.0-0t64_2.55.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 systemd amd64 257.2-3 [3094 kB] Fetched 3094 kB in 0s (67.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgnvgtqm/systemd_257.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libaudit1 amd64 1:4.0.2-2+b1 [55.2 kB] Fetched 55.2 kB in 0s (5458 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp02bwo_pz/libaudit1_4.0.2-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgtk-3-0t64 amd64 3.24.48-4 [2767 kB] Fetched 2767 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4fdhp0b/libgtk-3-0t64_3.24.48-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Fetched 189 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpirk5e_un/libelf1t64_0.192-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Fetched 116 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6hw2lxbe/libsharpyuv0_1.5.0-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgcc-s1 amd64 14.2.0-16 [72.8 kB] Fetched 72.8 kB in 0s (4790 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcua2dx9c/libgcc-s1_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Fetched 19.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmpdgar8lo1/libxxf86vm1_1.1.4-1+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libsmartcols1 amd64 2.40.4-3 [140 kB] Fetched 140 kB in 0s (5918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj6bu41ce/libsmartcols1_2.40.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Fetched 245 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpypnjmkat/libssh2-1t64_1.11.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Fetched 22.3 kB in 0s (1261 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp52bqrh96/libdrm-radeon1_2.4.123-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcolord2 amd64 1.4.7-1+b2 [140 kB] Fetched 140 kB in 0s (2680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4wnjxjq_/libcolord2_1.4.7-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Fetched 64.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr8dccjpb/libnghttp3-9_1.6.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Fetched 878 kB in 0s (63.5 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-7_amd64.deb' to '/srv/rebuilderd/tmp/tmpym65qk0z/procps_4.0.4-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libc-bin amd64 2.40-6 [631 kB] Fetched 631 kB in 0s (21.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdvwi9whh/libc-bin_2.40-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Fetched 8584 B in 0s (549 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptb2d_b26/dh-strip-nondeterminism_1.14.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libstdc++-14-dev amd64 14.2.0-16 [2373 kB] Fetched 2373 kB in 0s (34.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuwejz7ll/libstdc++-14-dev_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libwayland-server0 amd64 1.23.1-1 [34.0 kB] Fetched 34.0 kB in 0s (2419 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo9ahuu9t/libwayland-server0_1.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpam-runtime all 1.7.0-2 [248 kB] Fetched 248 kB in 0s (9217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpionl18nd/libpam-runtime_1.7.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsepol2 amd64 3.7-1 [293 kB] Fetched 293 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps911nv4m/libsepol2_3.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libatomic1 amd64 14.2.0-16 [9296 B] Fetched 9296 B in 0s (472 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2qw_hvu8/libatomic1_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6bc5p_kh/hostname_3.25_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 unzip amd64 6.0-28 [166 kB] Fetched 166 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_nfmk9x/unzip_6.0-28_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6+b1 [161 kB] Fetched 161 kB in 0s (8769 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ml8qupe/libbamtools2.5.2_2.5.2+dfsg-6+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Fetched 760 kB in 0s (55.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4e5r7jam/shared-mime-info_2.4-5+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 openssl-provider-legacy amd64 3.4.0-2 [301 kB] Fetched 301 kB in 0s (5826 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5i53ii4/openssl-provider-legacy_3.4.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Fetched 324 kB in 0s (29.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9twqubv9/libtiff6_4.5.1+git230720-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 bwa amd64 0.7.18-1 [212 kB] Fetched 212 kB in 0s (5758 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpblf1zjn7/bwa_0.7.18-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libicu72 amd64 72.1-6 [9421 kB] Fetched 9421 kB in 0s (138 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78kkloha/libicu72_72.1-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libudev1 amd64 257.2-3 [149 kB] Fetched 149 kB in 0s (381 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwzmtrvf_/libudev1_257.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxshmfence1 amd64 1.3-1+b3 [8852 B] Fetched 8852 B in 0s (535 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm1iunbux/libxshmfence1_1.3-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libseccomp2 amd64 2.5.5-2 [47.8 kB] Fetched 47.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvkqg4hcf/libseccomp2_2.5.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dbus-session-bus-common all 1.16.0-1 [51.1 kB] Fetched 51.1 kB in 0s (3620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcslcl6pp/dbus-session-bus-common_1.16.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Fetched 240 kB in 0s (6106 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx_9swscr/libxml-commons-external-java_1.4.01-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Fetched 1216 kB in 0s (37.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7s7tanc8/libseqan2-dev_2.4.0+dfsg-16_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcurl3t64-gnutls amd64 8.11.1-1+b1 [360 kB] Fetched 360 kB in 0s (6819 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe1yzpodh/libcurl3t64-gnutls_8.11.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 spades amd64 3.15.5+dfsg-8 [9229 kB] Fetched 9229 kB in 0s (95.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuk5a15ig/spades_3.15.5+dfsg-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 binutils-x86-64-linux-gnu amd64 2.43.90.20250202-1 [1019 kB] Fetched 1019 kB in 0s (23.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmfca50q7/binutils-x86-64-linux-gnu_2.43.90.20250202-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libglx-mesa0 amd64 24.3.4-3 [143 kB] Fetched 143 kB in 0s (4307 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8oupmo2i/libglx-mesa0_24.3.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Fetched 117 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn2o7xdsj/libxcb-randr0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libattr1 amd64 1:2.5.2-2 [22.7 kB] Fetched 22.7 kB in 0s (2168 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-2_amd64.deb' to '/srv/rebuilderd/tmp/tmprpz4t2y0/libattr1_2.5.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 liblsan0 amd64 14.2.0-16 [1205 kB] Fetched 1205 kB in 0s (22.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8fltdqyz/liblsan0_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libmount1 amd64 2.40.4-3 [200 kB] Fetched 200 kB in 0s (8206 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6w1pmpwh/libmount1_2.40.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 binutils-common amd64 2.43.90.20250202-1 [2508 kB] Fetched 2508 kB in 0s (56.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4u0cgy13/binutils-common_2.43.90.20250202-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Fetched 50.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmpta1xn3i5/libxext6_1.3.4-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Fetched 92.1 kB in 0s (1031 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpep4rccs7/bsdextrautils_2.40.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Fetched 817 kB in 0s (3561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0lzdf9f/libpython3.12-minimal_3.12.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 findutils amd64 4.10.0-3 [700 kB] Fetched 700 kB in 0s (54.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt5lhbijv/findutils_4.10.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Fetched 119 kB in 0s (11.5 MB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp60lipmw7/libcrypt-dev_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Fetched 98.3 kB in 0s (5351 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfvccoivt/libxml-commons-resolver1.1-java_1.2-11_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libwayland-cursor0 amd64 1.23.1-1 [11.4 kB] Fetched 11.4 kB in 0s (854 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpblt3m5m7/libwayland-cursor0_1.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 m4 amd64 1.4.19-5 [294 kB] Fetched 294 kB in 0s (28.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqsb35ww3/m4_1.4.19-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-lang3-java all 3.17.0-1 [641 kB] Fetched 641 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphfxenlrc/libcommons-lang3-java_3.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6bw6w752/libxcb-xfixes0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmx8kvn58/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg46ut_p0/bzip2_1.0.8-6_amd64.deb' Downloading dependency 1 of 411: libhwasan0:amd64=14.2.0-16 Downloading dependency 2 of 411: libtirpc-common:amd64=1.3.4+ds-1.3 Downloading dependency 3 of 411: dash:amd64=0.5.12-11 Downloading dependency 4 of 411: libx11-xcb1:amd64=2:1.8.10-2 Downloading dependency 5 of 411: dconf-gsettings-backend:amd64=0.40.0-5 Downloading dependency 6 of 411: ncbi-vdb-data:amd64=3.0.9+dfsg-2 Downloading dependency 7 of 411: libxcb-dri3-0:amd64=1.17.0-2+b1 Downloading dependency 8 of 411: fontconfig-config:amd64=2.15.0-2 Downloading dependency 9 of 411: libfribidi0:amd64=1.0.16-1 Downloading dependency 10 of 411: libxerces2-java:amd64=2.12.2-1 Downloading dependency 11 of 411: libslf4j-java:amd64=1.7.32-1 Downloading dependency 12 of 411: libgtk-3-common:amd64=3.24.48-4 Downloading dependency 13 of 411: autopoint:amd64=0.23.1-1 Downloading dependency 14 of 411: dpkg-dev:amd64=1.22.14 Downloading dependency 15 of 411: gcc-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 16 of 411: libspoa7.0.0:amd64=4.1.4-2+b1 Downloading dependency 17 of 411: mawk:amd64=1.3.4.20240905-1 Downloading dependency 18 of 411: libxfixes3:amd64=1:6.0.0-2+b4 Downloading dependency 19 of 411: libsemanage2:amd64=3.7-2.1 Downloading dependency 20 of 411: fontconfig:amd64=2.15.0-2 Downloading dependency 21 of 411: cpp-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 22 of 411: libcc1-0:amd64=14.2.0-16 Downloading dependency 23 of 411: libdrm-common:amd64=2.4.123-1 Downloading dependency 24 of 411: libsystemd0:amd64=257.2-3 Downloading dependency 25 of 411: gzip:amd64=1.13-1 Downloading dependency 26 of 411: libcommons-jexl2-java:amd64=2.1.1-6 Downloading dependency 27 of 411: librhino-java:amd64=1.7.15-1 Downloading dependency 28 of 411: libncursesw6:amd64=6.5+20250125-2 Downloading dependency 29 of 411: libgdbm-compat4t64:amd64=1.24-2 Downloading dependency 30 of 411: hicolor-icon-theme:amd64=0.18-2 Downloading dependency 31 of 411: libuchardet0:amd64=0.0.8-1+b2 Downloading dependency 32 of 411: python3-inflect:amd64=7.3.1-2 Downloading dependency 33 of 411: libxkbcommon0:amd64=1.7.0-2 Downloading dependency 34 of 411: libpython3.12-stdlib:amd64=3.12.9-1 Downloading dependency 35 of 411: libstdc++6:amd64=14.2.0-16 Downloading dependency 36 of 411: libglapi-mesa:amd64=24.3.4-3 Downloading dependency 37 of 411: python3-joblib:amd64=1.3.2-6 Downloading dependency 38 of 411: libsasl2-modules-db:amd64=2.1.28+dfsg1-8+b1 Downloading dependency 39 of 411: ca-certificates-java:amd64=20240118 Downloading dependency 40 of 411: libpixman-1-0:amd64=0.44.0-3 Downloading dependency 41 of 411: debhelper:amd64=13.24.1 Downloading dependency 42 of 411: passwd:amd64=1:4.16.0-7 Downloading dependency 43 of 411: libpam-systemd:amd64=257.2-3 Downloading dependency 44 of 411: samtools:amd64=1.20-3 Downloading dependency 45 of 411: openjdk-21-jdk-headless:amd64=21.0.6+7-1 Downloading dependency 46 of 411: mount:amd64=2.40.4-3 Downloading dependency 47 of 411: default-jre:amd64=2:1.21-76 Downloading dependency 48 of 411: libcairo-gobject2:amd64=1.18.2-2 Downloading dependency 49 of 411: python3-zipp:amd64=3.21.0-1 Downloading dependency 50 of 411: libavahi-common3:amd64=0.8-16 Downloading dependency 51 of 411: openjdk-21-jdk:amd64=21.0.6+7-1 Downloading dependency 52 of 411: libxdmcp6:amd64=1:1.1.5-1 Downloading dependency 53 of 411: libtool:amd64=2.5.4-3 Downloading dependency 54 of 411: libreadline8t64:amd64=8.2-6 Downloading dependency 55 of 411: base-files:amd64=13.6 Downloading dependency 56 of 411: libgdk-pixbuf2.0-common:amd64=2.42.12+dfsg-2 Downloading dependency 57 of 411: libkeyutils1:amd64=1.6.3-4 Downloading dependency 58 of 411: fonts-dejavu-core:amd64=2.37-8 Downloading dependency 59 of 411: libxi6:amd64=2:1.8.2-1 Downloading dependency 60 of 411: fonts-dejavu-mono:amd64=2.37-8 Downloading dependency 61 of 411: libpython3-stdlib:amd64=3.13.1-2 Downloading dependency 62 of 411: libssw0:amd64=1.1-15+b2 Downloading dependency 63 of 411: libvulkan1:amd64=1.4.304.0-1 Downloading dependency 64 of 411: ncbi-blast+:amd64=2.16.0+ds-6+b1 Downloading dependency 65 of 411: g++-14:amd64=14.2.0-16 Downloading dependency 66 of 411: libasan8:amd64=14.2.0-16 Downloading dependency 67 of 411: libx11-6:amd64=2:1.8.10-2 Downloading dependency 68 of 411: gcc-14-base:amd64=14.2.0-16 Downloading dependency 69 of 411: libp11-kit0:amd64=0.25.5-3 Downloading dependency 70 of 411: libxml2:amd64=2.12.7+dfsg+really2.9.14-0.2+b1 Downloading dependency 71 of 411: libatk1.0-0t64:amd64=2.55.2-1 Downloading dependency 72 of 411: libidn2-0:amd64=2.3.7-2+b1 Downloading dependency 73 of 411: libatk-bridge2.0-0t64:amd64=2.55.2-1 Downloading dependency 74 of 411: systemd:amd64=257.2-3 Downloading dependency 75 of 411: libaudit1:amd64=1:4.0.2-2+b1 Downloading dependency 76 of 411: libgtk-3-0t64:amd64=3.24.48-4 Downloading dependency 77 of 411: libelf1t64:amd64=0.192-4 Downloading dependency 78 of 411: libsharpyuv0:amd64=1.5.0-0.1 Downloading dependency 79 of 411: libgcc-s1:amd64=14.2.0-16 Downloading dependency 80 of 411: libxxf86vm1:amd64=1:1.1.4-1+b4 Downloading dependency 81 of 411: libsmartcols1:amd64=2.40.4-3 Downloading dependency 82 of 411: libssh2-1t64:amd64=1.11.1-1 Downloading dependency 83 of 411: libdrm-radeon1:amd64=2.4.123-1 Downloading dependency 84 of 411: libcolord2:amd64=1.4.7-1+b2 Downloading dependency 85 of 411: libnghttp3-9:amd64=1.6.0-2 Downloading dependency 86 of 411: procps:amd64=2:4.0.4-7 Downloading dependency 87 of 411: libc-bin:amd64=2.40-6 Downloading dependency 88 of 411: dh-strip-nondeterminism:amd64=1.14.1-1 Downloading dependency 89 of 411: libstdc++-14-dev:amd64=14.2.0-16 Downloading dependency 90 of 411: libwayland-server0:amd64=1.23.1-1 Downloading dependency 91 of 411: libpam-runtime:amd64=1.7.0-2 Downloading dependency 92 of 411: libsepol2:amd64=3.7-1 Downloading dependency 93 of 411: libatomic1:amd64=14.2.0-16 Downloading dependency 94 of 411: hostname:amd64=3.25 Downloading dependency 95 of 411: unzip:amd64=6.0-28 Downloading dependency 96 of 411: libbamtools2.5.2:amd64=2.5.2+dfsg-6+b1 Downloading dependency 97 of 411: shared-mime-info:amd64=2.4-5+b2 Downloading dependency 98 of 411: openssl-provider-legacy:amd64=3.4.0-2 Downloading dependency 99 of 411: libtiff6:amd64=4.5.1+git230720-5 Downloading dependency 100 of 411: bwa:amd64=0.7.18-1 Downloading dependency 101 of 411: libicu72:amd64=72.1-6 Downloading dependency 102 of 411: libudev1:amd64=257.2-3 Downloading dependency 103 of 411: libxshmfence1:amd64=1.3-1+b3 Downloading dependency 104 of 411: libseccomp2:amd64=2.5.5-2 Downloading dependency 105 of 411: dbus-session-bus-common:amd64=1.16.0-1 Downloading dependency 106 of 411: libxml-commons-external-java:amd64=1.4.01-6 Downloading dependency 107 of 411: libseqan2-dev:amd64=2.4.0+dfsg-16 Downloading dependency 108 of 411: libcurl3t64-gnutls:amd64=8.11.1-1+b1 Downloading dependency 109 of 411: spades:amd64=3.15.5+dfsg-8 Downloading dependency 110 of 411: binutils-x86-64-linux-gnu:amd64=2.43.90.20250202-1 Downloading dependency 111 of 411: libglx-mesa0:amd64=24.3.4-3 Downloading dependency 112 of 411: libxcb-randr0:amd64=1.17.0-2+b1 Downloading dependency 113 of 411: libattr1:amd64=1:2.5.2-2 Downloading dependency 114 of 411: liblsan0:amd64=14.2.0-16 Downloading dependency 115 of 411: libmount1:amd64=2.40.4-3 Downloading dependency 116 of 411: binutils-common:amd64=2.43.90.20250202-1 Downloading dependency 117 of 411: libxext6:amd64=2:1.3.4-1+b3 Downloading dependency 118 of 411: bsdextrautils:amd64=2.40.4-3 Downloading dependency 119 of 411: libpython3.12-minimal:amd64=3.12.9-1 Downloading dependency 120 of 411: findutils:amd64=4.10.0-3 Downloading dependency 121 of 411: libcrypt-dev:amd64=1:4.4.38-1 Downloading dependency 122 of 411: libxml-commons-resolver1.1-java:amd64=1.2-11 Downloading dependency 123 of 411: libwayland-cursor0:amd64=1.23.1-1 Downloading dependency 124 of 411: m4:amd64=1.4.19-5 Downloading dependency 125 of 411: libcommons-lang3-java:amd64=3.17.0-1 Downloading dependency 126 of 411: libxcb-xfixes0:amd64=1.17.0-2+b1 Downloading dependency 127 of 411: readline-common:amd64=8.2-6 Downloading dependency 128 of 411: bzip2:amd64=1.0.8-6 Downloading dependency 129 of 411: python3-all:amd64=3.13.1-2Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-all amd64 3.13.1-2 [1056 B] Fetched 1056 B in 0s (58.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0qbr8c9d/python3-all_3.13.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpem1abg2j/libmagic1t64_5.45-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libngs-java amd64 3.0.9+dfsg-7+b2 [112 kB] Fetched 112 kB in 0s (7516 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoug1yvub/libngs-java_3.0.9+dfsg-7+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Fetched 122 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9luxgvwv/libxcb-glx0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dh-python all 6.20250108 [113 kB] Fetched 113 kB in 0s (5541 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1pwb6ep/dh-python_6.20250108_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8913k3g6/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0rwy968v/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Fetched 49.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwn4g7z5c/libthai0_0.1.29-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libitm1 amd64 14.2.0-16 [25.9 kB] Fetched 25.9 kB in 0s (2298 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxo9ifrw0/libitm1_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Fetched 40.6 kB in 0s (2023 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppx601ejj/libnsl2_1.3.0-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Fetched 57.2 kB in 0s (5622 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp69pk4ruw/libpsl5t64_0.21.2-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxinerama1 amd64 2:1.1.4-3+b3 [16.0 kB] Fetched 16.0 kB in 0s (951 kB/s) dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmpgejxz7cc/libxinerama1_1.1.4-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 liblzma5 amd64 5.6.3-1+b1 [272 kB] Fetched 272 kB in 0s (24.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplkis0n19/liblzma5_5.6.3-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl2a0vngw/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 ca-certificates all 20241223 [164 kB] Fetched 164 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcdz_u87s/ca-certificates_20241223_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxtst6 amd64 2:1.2.5-1 [25.8 kB] Fetched 25.8 kB in 0s (1576 kB/s) dpkg-name: info: moved 'libxtst6_2%3a1.2.5-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdj6bkcgj/libxtst6_1.2.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Fetched 38.1 kB in 0s (3713 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzp4w63m0/libdatrie1_0.2.13-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libhtsjdk-java all 4.1.3+dfsg-2 [1841 kB] Fetched 1841 kB in 0s (35.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6tj0w51_/libhtsjdk-java_4.1.3+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB] Fetched 26.0 MB in 0s (108 MB/s) dpkg-name: info: moved 'libllvm19_1%3a19.1.7-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp82jo65b3/libllvm19_19.1.7-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Fetched 20.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp99j278s6/libxau6_1.0.11-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 diffutils amd64 1:3.10-2 [384 kB] Fetched 384 kB in 0s (33.9 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpvg2e9s2m/diffutils_3.10-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Fetched 39.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyljty0l3/libjansson4_2.14-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libctf0 amd64 2.43.90.20250202-1 [88.4 kB] Fetched 88.4 kB in 0s (4229 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi7lwdc75/libctf0_2.43.90.20250202-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libgl1-mesa-dri amd64 24.3.4-3 [45.2 kB] Fetched 45.2 kB in 0s (3494 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiu87yqxx/libgl1-mesa-dri_24.3.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Fetched 138 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiwri2b7m/libgssapi-krb5-2_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 linux-libc-dev all 6.12.11-1 [2494 kB] Fetched 2494 kB in 0s (30.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ra_2vj2/linux-libc-dev_6.12.11-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Fetched 1454 kB in 0s (23.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfh4g51ut/libgnutls30t64_3.8.8-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-16 [11.1 MB] Fetched 11.1 MB in 0s (110 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpacyazxus/cpp-14-x86-64-linux-gnu_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 openjdk-21-jre amd64 21.0.6+7-1 [205 kB] Fetched 205 kB in 0s (5944 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxx820q7/openjdk-21-jre_21.0.6+7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Fetched 32.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppx72sh6c/libkrb5support0_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Fetched 314 kB in 0s (28.6 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdxp3dp9w/libmagic-mgc_5.45-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gcc-14 amd64 14.2.0-16 [537 kB] Fetched 537 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmlely0ju/gcc-14_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-codec-java all 1.17.1-1 [303 kB] Fetched 303 kB in 0s (11.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprgm7_rah/libcommons-codec-java_1.17.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Fetched 106 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsc_u3r06/libxcb-present0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsystemd-shared amd64 257.2-3 [2139 kB] Fetched 2139 kB in 0s (31.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ns7ztf_/libsystemd-shared_257.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libezmorph-java all 1.0.6-4 [75.9 kB] Fetched 75.9 kB in 0s (4860 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgjbyfy6/libezmorph-java_1.0.6-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2g0m72wc/dwz_0.15-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Fetched 326 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ayfy1g8/libkrb5-3_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcap-ng0 amd64 0.8.5-4 [17.3 kB] Fetched 17.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp083ui_lm/libcap-ng0_0.8.5-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-collections4-java all 4.4-2 [682 kB] Fetched 682 kB in 0s (9279 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyz16cgb7/libcommons-collections4-java_4.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Fetched 119 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprrtutu02/libngtcp2-16_1.9.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp67vw_0r2/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 make amd64 4.4.1-1 [463 kB] Fetched 463 kB in 0s (37.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt_japtn0/make_4.4.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Fetched 16.3 kB in 0s (1059 kB/s) dpkg-name: info: moved 'libxcomposite1_1%3a0.4.6-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpguzhkp3g/libxcomposite1_0.4.6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dbus-daemon amd64 1.16.0-1 [157 kB] Fetched 157 kB in 0s (4004 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplk842sq_/dbus-daemon_1.16.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwnjffiv_/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Fetched 452 kB in 0s (41.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0r9wtl_k/libfreetype6_2.13.3+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libzstd1 amd64 1.5.6+dfsg-2 [300 kB] Fetched 300 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ucuk1uk/libzstd1_1.5.6+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsframe1 amd64 2.43.90.20250202-1 [78.0 kB] Fetched 78.0 kB in 0s (4221 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc_1boyyx/libsframe1_2.43.90.20250202-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libasound2t64 amd64 1.2.13-1+b1 [373 kB] Fetched 373 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ui3jnrh/libasound2t64_1.2.13-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 920 kB in 0s (58.4 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpxdshsvbj/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libhamcrest-java all 2.2-2 [121 kB] Fetched 121 kB in 0s (7849 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgr1z98w/libhamcrest-java_2.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dbus amd64 1.16.0-1 [70.5 kB] Fetched 70.5 kB in 0s (3339 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprrd6qqi6/dbus_1.16.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 coreutils amd64 9.5-1+b1 [2922 kB] Fetched 2922 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprfnkq_5p/coreutils_9.5-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libjaxen-java all 1.1.6-5 [214 kB] Fetched 214 kB in 0s (7797 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcww0i387/libjaxen-java_1.1.6-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Fetched 178 kB in 0s (6344 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl3j9h1k7/python3-yaml_6.0.2-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libunistring5 amd64 1.3-1 [476 kB] Fetched 476 kB in 0s (38.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13s5hq47/libunistring5_1.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libtsan2 amd64 14.2.0-16 [2461 kB] Fetched 2461 kB in 0s (51.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpack1qg16/libtsan2_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Fetched 73.0 kB in 0s (3680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_4ixp2m/python3-typing-extensions_4.12.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpam-modules-bin amd64 1.7.0-2 [48.8 kB] Fetched 48.8 kB in 0s (2490 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd0o56m40/libpam-modules-bin_1.7.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Fetched 19.6 kB in 0s (1276 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9slfj24/libfile-stripnondeterminism-perl_1.14.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-beanutils-java all 1.9.4-2 [233 kB] Fetched 233 kB in 0s (6672 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9g67hcm/libcommons-beanutils-java_1.9.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Fetched 27.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.10-1.1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmpb8h6yu82/libxrender1_0.9.10-1.1+b4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv67ve45z/build-essential_12.12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcursor1 amd64 1:1.2.3-1 [39.7 kB] Fetched 39.7 kB in 0s (2299 kB/s) dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpse2u0z9y/libxcursor1_1.2.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Fetched 859 kB in 0s (17.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf63z0ghc/libpython3.13-minimal_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Fetched 75.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp8ch345a/libgraphite2-3_1.3.14-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu3i5l03z/libmpc3_1.3.1-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libgbm1 amd64 24.3.4-3 [43.7 kB] Fetched 43.7 kB in 0s (2688 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp846jnudo/libgbm1_24.3.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgprofng0 amd64 2.43.90.20250202-1 [808 kB] Fetched 808 kB in 0s (18.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpms961c_9/libgprofng0_2.43.90.20250202-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 mesa-libgallium amd64 24.3.4-3 [9492 kB] Fetched 9492 kB in 0s (80.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqjdibo7/mesa-libgallium_24.3.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzov3djso/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 man-db amd64 2.13.0-1 [1420 kB] Fetched 1420 kB in 0s (77.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2pkzssas/man-db_2.13.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Fetched 43.3 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.45-3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp3jas8c9z/file_5.45-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-lang-java all 2.6-10 [273 kB] Fetched 273 kB in 0s (6847 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuniqd82m/libcommons-lang-java_2.6-10_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd11zc76t/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libuuid1 amd64 2.40.4-3 [36.3 kB] Fetched 36.3 kB in 0s (2010 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp1ai30xq/libuuid1_2.40.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 openjdk-21-jre-headless amd64 21.0.6+7-1 [41.7 MB] Fetched 41.7 MB in 0s (86.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpftr51h2m/openjdk-21-jre-headless_21.0.6+7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (30.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvm75hnc4/sed_4.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Fetched 81.7 kB in 0s (7762 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptjmaxgoe/libjsoncpp26_1.9.6-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libatspi2.0-0t64 amd64 2.55.2-1 [77.0 kB] Fetched 77.0 kB in 0s (4120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg7pskar/libatspi2.0-0t64_2.55.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 adduser all 3.137 [140 kB] Fetched 140 kB in 0s (5187 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxr7k_nq/adduser_3.137_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Fetched 45.2 kB in 0s (3060 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptl43aqj8/liblmdb0_0.9.31-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpcsclite1 amd64 2.3.1-1 [56.0 kB] Fetched 56.0 kB in 0s (2428 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgsqgytd6/libpcsclite1_2.3.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Fetched 1979 kB in 0s (44.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgv1ilz2g/libpython3.13-stdlib_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Fetched 1568 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpgtnx1vhn/cpp_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-io-java all 2.18.0-1 [509 kB] Fetched 509 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa_kb5vx6/libcommons-io-java_2.18.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 xkb-data all 2.42-1 [790 kB] Fetched 790 kB in 0s (21.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkg70q0u4/xkb-data_2.42-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Fetched 318 kB in 0s (28.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoflyrb4e/libwebp7_1.5.0-0.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Fetched 29.6 kB in 0s (1602 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfdy7kelk/libsnappy1v5_1.2.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Fetched 5136 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp48xvxd53/gcc_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libbinutils amd64 2.43.90.20250202-1 [534 kB] Fetched 534 kB in 0s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmw2uiigk/libbinutils_2.43.90.20250202-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libselinux1 amd64 3.7-3.1 [76.8 kB] Fetched 76.8 kB in 0s (805 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph6ahni_o/libselinux1_3.7-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-16 [12.1 MB] Fetched 12.1 MB in 0s (58.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8qf0bmlx/g++-14-x86-64-linux-gnu_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Fetched 34.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpya7hpc0r/libglx0_1.7.0-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libblkid1 amd64 2.40.4-3 [169 kB] Fetched 169 kB in 0s (5466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprhedi_v7/libblkid1_2.40.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Fetched 1344 B in 0s (130 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp8qc1vna2/g++_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Fetched 52.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqyr5k09l/libglvnd0_1.7.0-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 bcftools amd64 1.20-2 [760 kB] Fetched 760 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvenuilj8/bcftools_1.20-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libnss3 amd64 2:3.107-1 [1390 kB] Fetched 1390 kB in 0s (21.9 MB/s) dpkg-name: info: moved 'libnss3_2%3a3.107-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppgbhqi0i/libnss3_3.107-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libwayland-client0 amd64 1.23.1-1 [26.5 kB] Fetched 26.5 kB in 0s (2576 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5dkvsdq7/libwayland-client0_1.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Fetched 28.0 kB in 0s (1439 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpti3ykarw/python3_3.13.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 default-jdk-headless amd64 2:1.21-76 [1124 B] Fetched 1124 B in 0s (58.8 kB/s) dpkg-name: info: moved 'default-jdk-headless_2%3a1.21-76_amd64.deb' to '/srv/rebuilderd/tmp/tmp_fp2rogi/default-jdk-headless_1.21-76_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [140 kB] Fetched 140 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbs2msfqj/libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 netbase all 6.4 [12.8 kB] Fetched 12.8 kB in 0s (711 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbbzmlqks/netbase_6.4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Fetched 535 kB in 0s (45.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphd31ydsl/libcairo2_1.18.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdebconfclient0 amd64 0.277 [10.4 kB] Fetched 10.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpref_wf94/libdebconfclient0_0.277_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libngs-jni amd64 3.0.9+dfsg-7+b2 [25.9 kB] Fetched 25.9 kB in 0s (1091 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp75xtszna/libngs-jni_3.0.9+dfsg-7+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libctf-nobfd0 amd64 2.43.90.20250202-1 [155 kB] Fetched 155 kB in 0s (792 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcx44e79c/libctf-nobfd0_2.43.90.20250202-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgif7 amd64 5.2.2-1+b1 [44.2 kB] Fetched 44.2 kB in 0s (2710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5hbfmlh5/libgif7_5.2.2-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Fetched 302 kB in 0s (26.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4z1mgcew/libbrotli1_1.1.0-2+b6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libapache-pom-java all 33-2 [5852 B] Fetched 5852 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbuxnlel2/libapache-pom-java_33-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4p9hlzw/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 login.defs all 1:4.16.0-7 [185 kB] Fetched 185 kB in 0s (8158 kB/s) dpkg-name: info: moved 'login.defs_1%3a4.16.0-7_all.deb' to '/srv/rebuilderd/tmp/tmpczbgr0aq/login.defs_4.16.0-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 miniasm amd64 0.3+dfsg-4 [29.9 kB] Fetched 29.9 kB in 0s (1301 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpowye_ou3/miniasm_0.3+dfsg-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 perl-base amd64 5.40.0-8 [1675 kB] Fetched 1675 kB in 0s (89.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkfvzyco4/perl-base_5.40.0-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libc-dev-bin amd64 2.40-6 [56.6 kB] Fetched 56.6 kB in 0s (2711 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt80gx0ry/libc-dev-bin_2.40-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxdamage1 amd64 1:1.1.6-1+b2 [15.5 kB] Fetched 15.5 kB in 0s (626 kB/s) dpkg-name: info: moved 'libxdamage1_1%3a1.1.6-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp9i0m4fuy/libxdamage1_1.1.6-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libhogweed6t64 amd64 3.10-1+b1 [335 kB] Fetched 335 kB in 0s (9766 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbsq1q96/libhogweed6t64_3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libedlib1 amd64 1.2.7-6+b2 [18.1 kB] Fetched 18.1 kB in 0s (1481 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgazv7k_/libedlib1_1.2.7-6+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcloudproviders0 amd64 0.3.6-1+b1 [29.2 kB] Fetched 29.2 kB in 0s (2306 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yidws1w/libcloudproviders0_0.3.6-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gettext amd64 0.23.1-1 [1680 kB] Fetched 1680 kB in 0s (90.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpipnb1z2e/gettext_0.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Fetched 14.6 kB in 0s (823 kB/s) dpkg-name: info: moved 'libsensors-config_1%3a3.6.0-10_all.deb' to '/srv/rebuilderd/tmp/tmplkyrwf_3/libsensors-config_3.6.0-10_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libquadmath0 amd64 14.2.0-16 [145 kB] Fetched 145 kB in 0s (2403 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0fpfuj34/libquadmath0_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsnappy-jni amd64 1.1.10.7-1 [6492 B] Fetched 6492 B in 0s (57.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2lf6wmoj/libsnappy-jni_1.1.10.7-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (2727 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqryaw4jq/libacl1_2.3.2-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libc6-dev amd64 2.40-6 [1958 kB] Fetched 1958 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpptnnztzp/libc6-dev_2.40-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Fetched 93.8 kB in 0s (8944 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0obq1xyu/libedit2_3.1-20250104-1_amd64.deb' Downloading dependency 130 of 411: libmagic1t64:amd64=1:5.45-3+b1 Downloading dependency 131 of 411: libngs-java:amd64=3.0.9+dfsg-7+b2 Downloading dependency 132 of 411: libxcb-glx0:amd64=1.17.0-2+b1 Downloading dependency 133 of 411: dh-python:amd64=6.20250108 Downloading dependency 134 of 411: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 135 of 411: init-system-helpers:amd64=1.68 Downloading dependency 136 of 411: libthai0:amd64=0.1.29-2+b1 Downloading dependency 137 of 411: libitm1:amd64=14.2.0-16 Downloading dependency 138 of 411: libnsl2:amd64=1.3.0-3+b3 Downloading dependency 139 of 411: libpsl5t64:amd64=0.21.2-1.1+b1 Downloading dependency 140 of 411: libxinerama1:amd64=2:1.1.4-3+b3 Downloading dependency 141 of 411: liblzma5:amd64=5.6.3-1+b1 Downloading dependency 142 of 411: python3-jaraco.text:amd64=4.0.0-1 Downloading dependency 143 of 411: ca-certificates:amd64=20241223 Downloading dependency 144 of 411: libxtst6:amd64=2:1.2.5-1 Downloading dependency 145 of 411: libdatrie1:amd64=0.2.13-3+b1 Downloading dependency 146 of 411: libhtsjdk-java:amd64=4.1.3+dfsg-2 Downloading dependency 147 of 411: libllvm19:amd64=1:19.1.7-1+b1 Downloading dependency 148 of 411: libxau6:amd64=1:1.0.11-1 Downloading dependency 149 of 411: diffutils:amd64=1:3.10-2 Downloading dependency 150 of 411: libjansson4:amd64=2.14-2+b3 Downloading dependency 151 of 411: libctf0:amd64=2.43.90.20250202-1 Downloading dependency 152 of 411: libgl1-mesa-dri:amd64=24.3.4-3 Downloading dependency 153 of 411: libgssapi-krb5-2:amd64=1.21.3-4 Downloading dependency 154 of 411: linux-libc-dev:amd64=6.12.11-1 Downloading dependency 155 of 411: libgnutls30t64:amd64=3.8.8-2 Downloading dependency 156 of 411: cpp-14-x86-64-linux-gnu:amd64=14.2.0-16 Downloading dependency 157 of 411: openjdk-21-jre:amd64=21.0.6+7-1 Downloading dependency 158 of 411: libkrb5support0:amd64=1.21.3-4 Downloading dependency 159 of 411: libmagic-mgc:amd64=1:5.45-3+b1 Downloading dependency 160 of 411: gcc-14:amd64=14.2.0-16 Downloading dependency 161 of 411: libcommons-codec-java:amd64=1.17.1-1 Downloading dependency 162 of 411: libxcb-present0:amd64=1.17.0-2+b1 Downloading dependency 163 of 411: libsystemd-shared:amd64=257.2-3 Downloading dependency 164 of 411: libezmorph-java:amd64=1.0.6-4 Downloading dependency 165 of 411: dwz:amd64=0.15-1+b1 Downloading dependency 166 of 411: libkrb5-3:amd64=1.21.3-4 Downloading dependency 167 of 411: libcap-ng0:amd64=0.8.5-4 Downloading dependency 168 of 411: libcommons-collections4-java:amd64=4.4-2 Downloading dependency 169 of 411: libngtcp2-16:amd64=1.9.1-1 Downloading dependency 170 of 411: sensible-utils:amd64=0.0.24 Downloading dependency 171 of 411: make:amd64=4.4.1-1 Downloading dependency 172 of 411: libxcomposite1:amd64=1:0.4.6-1 Downloading dependency 173 of 411: dbus-daemon:amd64=1.16.0-1 Downloading dependency 174 of 411: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 175 of 411: libfreetype6:amd64=2.13.3+dfsg-1 Downloading dependency 176 of 411: libzstd1:amd64=1.5.6+dfsg-2 Downloading dependency 177 of 411: libsframe1:amd64=2.43.90.20250202-1 Downloading dependency 178 of 411: libasound2t64:amd64=1.2.13-1+b1 Downloading dependency 179 of 411: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 180 of 411: libhamcrest-java:amd64=2.2-2 Downloading dependency 181 of 411: dbus:amd64=1.16.0-1 Downloading dependency 182 of 411: coreutils:amd64=9.5-1+b1 Downloading dependency 183 of 411: libjaxen-java:amd64=1.1.6-5 Downloading dependency 184 of 411: python3-yaml:amd64=6.0.2-1+b1 Downloading dependency 185 of 411: libunistring5:amd64=1.3-1 Downloading dependency 186 of 411: libtsan2:amd64=14.2.0-16 Downloading dependency 187 of 411: python3-typing-extensions:amd64=4.12.2-2 Downloading dependency 188 of 411: libpam-modules-bin:amd64=1.7.0-2 Downloading dependency 189 of 411: libfile-stripnondeterminism-perl:amd64=1.14.1-1 Downloading dependency 190 of 411: libcommons-beanutils-java:amd64=1.9.4-2 Downloading dependency 191 of 411: libxrender1:amd64=1:0.9.10-1.1+b4 Downloading dependency 192 of 411: build-essential:amd64=12.12 Downloading dependency 193 of 411: libxcursor1:amd64=1:1.2.3-1 Downloading dependency 194 of 411: libpython3.13-minimal:amd64=3.13.2-1 Downloading dependency 195 of 411: libgraphite2-3:amd64=1.3.14-2+b1 Downloading dependency 196 of 411: libmpc3:amd64=1.3.1-1+b3 Downloading dependency 197 of 411: libgbm1:amd64=24.3.4-3 Downloading dependency 198 of 411: libgprofng0:amd64=2.43.90.20250202-1 Downloading dependency 199 of 411: mesa-libgallium:amd64=24.3.4-3 Downloading dependency 200 of 411: dh-autoreconf:amd64=20 Downloading dependency 201 of 411: man-db:amd64=2.13.0-1 Downloading dependency 202 of 411: file:amd64=1:5.45-3+b1 Downloading dependency 203 of 411: libcommons-lang-java:amd64=2.6-10 Downloading dependency 204 of 411: python3-autocommand:amd64=2.2.2-3 Downloading dependency 205 of 411: libuuid1:amd64=2.40.4-3 Downloading dependency 206 of 411: openjdk-21-jre-headless:amd64=21.0.6+7-1 Downloading dependency 207 of 411: sed:amd64=4.9-2 Downloading dependency 208 of 411: libjsoncpp26:amd64=1.9.6-3 Downloading dependency 209 of 411: libatspi2.0-0t64:amd64=2.55.2-1 Downloading dependency 210 of 411: adduser:amd64=3.137 Downloading dependency 211 of 411: liblmdb0:amd64=0.9.31-1+b2 Downloading dependency 212 of 411: libpcsclite1:amd64=2.3.1-1 Downloading dependency 213 of 411: libpython3.13-stdlib:amd64=3.13.2-1 Downloading dependency 214 of 411: cpp:amd64=4:14.2.0-1 Downloading dependency 215 of 411: libcommons-io-java:amd64=2.18.0-1 Downloading dependency 216 of 411: xkb-data:amd64=2.42-1 Downloading dependency 217 of 411: libwebp7:amd64=1.5.0-0.1 Downloading dependency 218 of 411: libsnappy1v5:amd64=1.2.1-1+b1 Downloading dependency 219 of 411: gcc:amd64=4:14.2.0-1 Downloading dependency 220 of 411: libbinutils:amd64=2.43.90.20250202-1 Downloading dependency 221 of 411: libselinux1:amd64=3.7-3.1 Downloading dependency 222 of 411: g++-14-x86-64-linux-gnu:amd64=14.2.0-16 Downloading dependency 223 of 411: libglx0:amd64=1.7.0-1+b2 Downloading dependency 224 of 411: libblkid1:amd64=2.40.4-3 Downloading dependency 225 of 411: g++:amd64=4:14.2.0-1 Downloading dependency 226 of 411: libglvnd0:amd64=1.7.0-1+b2 Downloading dependency 227 of 411: bcftools:amd64=1.20-2 Downloading dependency 228 of 411: libnss3:amd64=2:3.107-1 Downloading dependency 229 of 411: libwayland-client0:amd64=1.23.1-1 Downloading dependency 230 of 411: python3:amd64=3.13.1-2 Downloading dependency 231 of 411: default-jdk-headless:amd64=2:1.21-76 Downloading dependency 232 of 411: libgdk-pixbuf-2.0-0:amd64=2.42.12+dfsg-2 Downloading dependency 233 of 411: netbase:amd64=6.4 Downloading dependency 234 of 411: libcairo2:amd64=1.18.2-2 Downloading dependency 235 of 411: libdebconfclient0:amd64=0.277 Downloading dependency 236 of 411: libngs-jni:amd64=3.0.9+dfsg-7+b2 Downloading dependency 237 of 411: libctf-nobfd0:amd64=2.43.90.20250202-1 Downloading dependency 238 of 411: libgif7:amd64=5.2.2-1+b1 Downloading dependency 239 of 411: libbrotli1:amd64=1.1.0-2+b6 Downloading dependency 240 of 411: libapache-pom-java:amd64=33-2 Downloading dependency 241 of 411: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 242 of 411: login.defs:amd64=1:4.16.0-7 Downloading dependency 243 of 411: miniasm:amd64=0.3+dfsg-4 Downloading dependency 244 of 411: perl-base:amd64=5.40.0-8 Downloading dependency 245 of 411: libc-dev-bin:amd64=2.40-6 Downloading dependency 246 of 411: libxdamage1:amd64=1:1.1.6-1+b2 Downloading dependency 247 of 411: libhogweed6t64:amd64=3.10-1+b1 Downloading dependency 248 of 411: libedlib1:amd64=1.2.7-6+b2 Downloading dependency 249 of 411: libcloudproviders0:amd64=0.3.6-1+b1 Downloading dependency 250 of 411: gettext:amd64=0.23.1-1 Downloading dependency 251 of 411: libsensors-config:amd64=1:3.6.0-10 Downloading dependency 252 of 411: libquadmath0:amd64=14.2.0-16 Downloading dependency 253 of 411: libsnappy-jni:amd64=1.1.10.7-1 Downloading dependency 254 of 411: libacl1:amd64=2.3.2-2+b1 Downloading dependency 255 of 411: libc6-dev:amd64=2.40-6 Downloading dependency 256 of 411: libedit2:amd64=3.1-20250104-1 Downloading dependency 257 of 411: python3.12-minimal:amd64=3.12.9-1Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Fetched 2163 kB in 0s (36.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0i1srs2a/python3.12-minimal_3.12.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 scala-library all 2.11.12-5 [9588 kB] Fetched 9588 kB in 0s (36.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiswknu5p/scala-library_2.11.12-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Fetched 90.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpnpc9a725/libcrypt1_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB] Fetched 479 kB in 0s (40.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoksjeqo9/libharfbuzz0b_10.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libavahi-common-data amd64 0.8-16 [112 kB] Fetched 112 kB in 0s (4848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx8efghiv/libavahi-common-data_0.8-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] Fetched 530 kB in 0s (18.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa8af7mfi/libcommons-collections3-java_3.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp69kt4pyh/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Fetched 68.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeb0l2zng/libcommons-logging-java_1.3.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Fetched 18.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp6sczfy4/libngtcp2-crypto-gnutls8_1.9.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dbus-user-session amd64 1.16.0-1 [51.0 kB] Fetched 51.0 kB in 0s (433 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1w7q7gy1/dbus-user-session_1.16.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB] Fetched 391 kB in 0s (33.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_iz06b5/libfontconfig1_2.15.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Fetched 144 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbe96u9ji/libxcb1_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdbus-1-3 amd64 1.16.0-1 [177 kB] Fetched 177 kB in 0s (3272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp195w2fbx/libdbus-1-3_1.16.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Fetched 64.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-7_amd64.deb' to '/srv/rebuilderd/tmp/tmplir7kyvr/libproc2-0_4.0.4-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppn8tv2fs/libxcb-render0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 automake all 1:1.17-3 [862 kB] Fetched 862 kB in 0s (61.6 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-3_all.deb' to '/srv/rebuilderd/tmp/tmpehlpm95m/automake_1.17-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Fetched 80.9 kB in 0s (8056 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2q82_vu0/libk5crypto3_1.21.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Fetched 90.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf3rt81h2/libdebhelper-perl_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Fetched 89.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9cb7sn7b/libgl1_1.7.0-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Fetched 63.7 kB in 0s (4322 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvs0ed0bh/libdrm-intel1_2.4.123-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdpkg-perl all 1.22.14 [646 kB] Fetched 646 kB in 0s (23.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcs19yxqv/libdpkg-perl_1.22.14_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB] Fetched 226 kB in 0s (21.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpchk8gtui/libpango-1.0-0_1.56.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libubsan1 amd64 14.2.0-16 [1075 kB] Fetched 1075 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpav46z0gu/libubsan1_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (0 B/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmphg1nqgo4/g++-x86-64-linux-gnu_14.2.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxrandr2 amd64 2:1.5.4-1+b3 [36.3 kB] Fetched 36.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrandr2_2%3a1.5.4-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmpm6pr34g6/libxrandr2_1.5.4-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 x11-common all 1:7.7+24 [217 kB] Fetched 217 kB in 0s (19.4 MB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+24_all.deb' to '/srv/rebuilderd/tmp/tmpgosx98ui/x11-common_7.7+24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Fetched 160 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplstqbnxp/liblcms2-2_2.16-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB] Fetched 1189 kB in 0s (32.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplz34y2nn/libncbi-vdb3_3.0.9+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (38.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsn09ldsm/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 bamtools amd64 2.5.2+dfsg-6+b1 [207 kB] Fetched 207 kB in 0s (6817 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu_47iovr/bamtools_2.5.2+dfsg-6+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 java-wrappers all 0.5 [8848 B] Fetched 8848 B in 0s (513 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6_030uu/java-wrappers_0.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libapparmor1 amd64 3.1.7-1+b3 [42.1 kB] Fetched 42.1 kB in 0s (2161 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxwd_vqrs/libapparmor1_3.1.7-1+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpam-modules amd64 1.7.0-2 [177 kB] Fetched 177 kB in 0s (4655 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyvtjteh3/libpam-modules_1.7.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7+b2 [156 kB] Fetched 156 kB in 0s (6301 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1k9x3y_h/libncbi-ngs3_3.0.9+dfsg-7+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 perl-modules-5.40 all 5.40.0-8 [3015 kB] Fetched 3015 kB in 0s (109 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd98ynv58/perl-modules-5.40_5.40.0-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpam0g amd64 1.7.0-2 [69.8 kB] Fetched 69.8 kB in 0s (4300 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0n2kalmt/libpam0g_1.7.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Fetched 337 kB in 0s (31.5 MB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.10-2_all.deb' to '/srv/rebuilderd/tmp/tmpi1lpytk7/libx11-data_1.8.10-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcups2t64 amd64 2.4.10-2+b1 [251 kB] Fetched 251 kB in 0s (4653 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3h3w1sc/libcups2t64_2.4.10-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dbus-bin amd64 1.16.0-1 [78.9 kB] Fetched 78.9 kB in 0s (4755 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wmgc4rp/dbus-bin_1.16.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Fetched 106 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdssyp7sc/libexpat1_2.6.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Fetched 8560 kB in 0s (135 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_eqjb1i0/libz3-4_4.13.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 bowtie2 amd64 2.5.4-1+b1 [1508 kB] Fetched 1508 kB in 0s (37.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppk06dtdd/bowtie2_2.5.4-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Fetched 455 kB in 0s (8115 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmzmqmh6k/libhts3t64_1.20+ds-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libwayland-egl1 amd64 1.23.1-1 [5452 B] Fetched 5452 B in 0s (293 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmkayrrhk/libwayland-egl1_1.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (22.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmped3ais00/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Fetched 2205 kB in 0s (54.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp2hz622k/python3.13-minimal_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 openssl amd64 3.4.0-2 [1422 kB] Fetched 1422 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgei4bjpx/openssl_3.4.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Fetched 27.0 kB in 0s (2236 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpivliw4u7/python3-minimal_3.13.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 ncurses-base all 6.5+20250125-2 [273 kB] Fetched 273 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1t7q5szt/ncurses-base_6.5+20250125-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dpkg amd64 1.22.14 [1537 kB] Fetched 1537 kB in 0s (5015 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0v8wfn6m/dpkg_1.22.14_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Fetched 720 kB in 0s (19.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp22rshtbx/python3-setuptools_75.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Fetched 10.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzk6tbdge/libcommons-parent-java_56-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Fetched 222 kB in 0s (7393 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2b7g0ou9/python3-pkg-resources_75.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 sysvinit-utils amd64 3.13-1 [33.2 kB] Fetched 33.2 kB in 0s (2259 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpus840ne4/sysvinit-utils_3.13-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Fetched 52.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpag9m_1bs/libyaml-0-2_0.2.5-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Fetched 32.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnt95n8k7/libjbig0_2.1-6.1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 perl amd64 5.40.0-8 [267 kB] Fetched 267 kB in 0s (24.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyen77nh_/perl_5.40.0-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Fetched 24.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo96b6gc1/libcom-err2_1.47.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB] Fetched 55.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvh9gpu1r/libpangoft2-1.0-0_1.56.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Fetched 183 kB in 0s (18.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu3pl_qv0/liblerc4_4.0.0+ds-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Fetched 192 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6batbow0/libldap2_2.6.9+dfsg-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libperl5.40 amd64 5.40.0-8 [4320 kB] Fetched 4320 kB in 0s (126 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ctj4bpn/libperl5.40_5.40.0-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Fetched 560 kB in 0s (44.3 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp_bgulz40/libgmp10_6.3.0+dfsg-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libasound2-data all 1.2.13-1 [21.1 kB] Fetched 21.1 kB in 0s (1142 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyuwa5nkl/libasound2-data_1.2.13-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 ncurses-bin amd64 6.5+20250125-2 [438 kB] Fetched 438 kB in 0s (34.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplp152jon/ncurses-bin_6.5+20250125-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Fetched 243 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfbs2nwwj/gettext-base_0.23.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Fetched 65.3 kB in 0s (4053 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuk8gpgpf/python3-more-itertools_10.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libmpfr6 amd64 4.2.1-1+b2 [724 kB] Fetched 724 kB in 0s (59.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdr6m0xdq/libmpfr6_4.2.1-1+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgomp1 amd64 14.2.0-16 [137 kB] Fetched 137 kB in 0s (5144 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtla00pv/libgomp1_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libtinfo6 amd64 6.5+20250125-2 [348 kB] Fetched 348 kB in 0s (29.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi61badt2/libtinfo6_6.5+20250125-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 racon amd64 1.5.0-3 [3115 kB] Fetched 3115 kB in 0s (37.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubut7y3p/racon_1.5.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 systemd-sysv amd64 257.2-3 [61.1 kB] Fetched 61.1 kB in 0s (4600 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuhfq4m58/systemd-sysv_257.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Fetched 42.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4x_keaud/libpipeline1_1.5.8-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-16 [21.4 MB] Fetched 21.4 MB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7zysduah/gcc-14-x86-64-linux-gnu_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libjson-java all 3.1.0+dfsg-2 [142 kB] Fetched 142 kB in 0s (7054 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzpca0_tf/libjson-java_3.1.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 base-passwd amd64 3.6.6 [53.1 kB] Fetched 53.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqb_depml/base-passwd_3.6.6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Fetched 95.6 kB in 0s (5268 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjdw0mkyw/libhtscodecs2_1.6.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Fetched 168 kB in 0s (0 B/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpnkknxeif/libjpeg62-turbo_2.1.5-3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libssl3t64 amd64 3.4.0-2 [2302 kB] Fetched 2302 kB in 0s (45.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc0o77p3a/libssl3t64_3.4.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Fetched 37.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph09iakgi/libbz2-1.0_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB] Fetched 48.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6foytejm/libavahi-client3_0.8-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 media-types all 10.1.0 [26.9 kB] Fetched 26.9 kB in 0s (1633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt3lhmsz5/media-types_10.1.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 debconf all 1.5.89 [120 kB] Fetched 120 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpawr04on7/debconf_1.5.89_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Fetched 23.6 kB in 0s (882 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcc0maf00/libffi8_3.4.6-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Fetched 38.7 kB in 0s (2327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxqs8t0o/libdrm2_2.4.123-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Fetched 47.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4p22gew3/libdeflate0_1.23-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-packaging all 24.2-1 [55.3 kB] Fetched 55.3 kB in 0s (3077 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe8kyghw7/python3-packaging_24.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Fetched 1185 kB in 0s (78.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf54o01ey/groff-base_1.23.0-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 patch amd64 2.7.6-7 [128 kB] Fetched 128 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3jra_dgi/patch_2.7.6-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libnlopt0 amd64 2.7.1-6+b2 [178 kB] Fetched 178 kB in 0s (9011 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu9xp8vea/libnlopt0_2.7.1-6+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Fetched 75.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2l490ygk/libgdbm6t64_1.24-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Fetched 3537 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbn7r3reb/ncbi-data_6.1.20170106+dfsg2-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libisl23 amd64 0.27-1 [659 kB] Fetched 659 kB in 0s (51.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp7tuksuz/libisl23_0.27-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Fetched 37.0 kB in 0s (322 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprjmx8s34/python3-typeguard_4.4.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Fetched 57.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzel49a45/libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdconf1 amd64 0.40.0-5 [41.8 kB] Fetched 41.8 kB in 0s (1374 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdsl3kz52/libdconf1_0.40.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Fetched 49.5 kB in 0s (2107 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv8ha0hm3/libtasn1-6_4.19.0-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 at-spi2-common all 2.55.2-1 [170 kB] Fetched 170 kB in 0s (455 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpddp0xwg7/at-spi2-common_2.55.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 default-jdk amd64 2:1.21-76 [1076 B] Fetched 1076 B in 0s (72.9 kB/s) dpkg-name: info: moved 'default-jdk_2%3a1.21-76_amd64.deb' to '/srv/rebuilderd/tmp/tmp4c4qkjfz/default-jdk_1.21-76_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB] Fetched 284 kB in 0s (24.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1ad2o1o/libpng16-16t64_1.6.46-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Fetched 3192 B in 0s (255 kB/s) dpkg-name: info: moved 'default-jre-headless_2%3a1.21-76_amd64.deb' to '/srv/rebuilderd/tmp/tmpyfoqxpe1/default-jre-headless_1.21-76_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Fetched 913 kB in 0s (18.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwi7g2_bi/libsqlite3-0_3.46.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Fetched 83.1 kB in 0s (7872 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp29e2lqow/libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libbsd0 amd64 0.12.2-2 [131 kB] Fetched 131 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphpmd1q5j/libbsd0_0.12.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Fetched 75.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtj1nhrc/libnghttp2-14_1.64.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 cpp-14 amd64 14.2.0-16 [1276 B] Fetched 1276 B in 0s (30.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp502hl9tq/cpp-14_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Fetched 815 kB in 0s (61.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppt6s_5yz/tar_1.35+dfsg-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 gtk-update-icon-cache amd64 4.16.12+ds-3 [50.7 kB] Fetched 50.7 kB in 0s (4205 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqhnzuwho/gtk-update-icon-cache_4.16.12+ds-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Fetched 22.3 kB in 0s (442 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xvyjnx_/libdrm-amdgpu1_2.4.123-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB] Fetched 35.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo4sccnbm/libpangocairo-1.0-0_1.56.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Fetched 88.9 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpvmzs2zaj/zlib1g_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Fetched 51.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt56abse9/libpciaccess0_0.17-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Fetched 35.1 kB in 0s (2233 kB/s) dpkg-name: info: moved 'libsensors5_1%3a3.6.0-10+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmppjyzfqyc/libsensors5_3.6.0-10+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Fetched 105 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpofer1ac6/libxcb-shm0_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxom-java all 1.3.9-1 [174 kB] Fetched 174 kB in 0s (512 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo7qcjww7/libxom-java_1.3.9-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 bash amd64 5.2.37-1 [1501 kB] Fetched 1501 kB in 0s (83.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwuyjvlup/bash_5.2.37-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 junit4 all 4.13.2-5 [350 kB] Fetched 350 kB in 0s (6190 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxky922b6/junit4_4.13.2-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 pilon all 1.24-3 [497 kB] Fetched 497 kB in 0s (9215 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjt7c4ph2/pilon_1.24-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 xz-utils amd64 5.6.3-1+b1 [542 kB] Fetched 542 kB in 0s (46.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6m3uftxt/xz-utils_5.6.3-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Fetched 58.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplcz3z3in/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Fetched 110 kB in 0s (6174 kB/s) dpkg-name: info: moved 'libnspr4_2%3a4.36-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpsj6rr7ww/libnspr4_4.36-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 debianutils amd64 5.21 [92.1 kB] Fetched 92.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgbzqyuwb/debianutils_5.21_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libncurses6 amd64 6.5+20250125-2 [105 kB] Fetched 105 kB in 0s (841 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzamx4mto/libncurses6_6.5+20250125-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dconf-service amd64 0.40.0-5 [32.4 kB] Fetched 32.4 kB in 0s (1443 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqcog7tol/dconf-service_0.40.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 dbus-system-bus-common all 1.16.0-1 [52.2 kB] Fetched 52.2 kB in 0s (1676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3oygsee_/dbus-system-bus-common_1.16.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Fetched 234 kB in 0s (3366 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11zne9n_/libmbedtls21_3.6.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpchl4wxx8/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Fetched 154 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprdsbkgwn/libuv1t64_1.50.0-2_amd64.deb' Downloading dependency 258 of 411: scala-library:amd64=2.11.12-5 Downloading dependency 259 of 411: libcrypt1:amd64=1:4.4.38-1 Downloading dependency 260 of 411: libharfbuzz0b:amd64=10.2.0-1 Downloading dependency 261 of 411: libavahi-common-data:amd64=0.8-16 Downloading dependency 262 of 411: libcommons-collections3-java:amd64=3.2.2-3 Downloading dependency 263 of 411: python3-jaraco.functools:amd64=4.1.0-1 Downloading dependency 264 of 411: libcommons-logging-java:amd64=1.3.0-1 Downloading dependency 265 of 411: libngtcp2-crypto-gnutls8:amd64=1.9.1-1 Downloading dependency 266 of 411: dbus-user-session:amd64=1.16.0-1 Downloading dependency 267 of 411: libfontconfig1:amd64=2.15.0-2 Downloading dependency 268 of 411: libxcb1:amd64=1.17.0-2+b1 Downloading dependency 269 of 411: libdbus-1-3:amd64=1.16.0-1 Downloading dependency 270 of 411: libproc2-0:amd64=2:4.0.4-7 Downloading dependency 271 of 411: libxcb-render0:amd64=1.17.0-2+b1 Downloading dependency 272 of 411: automake:amd64=1:1.17-3 Downloading dependency 273 of 411: libk5crypto3:amd64=1.21.3-4 Downloading dependency 274 of 411: libdebhelper-perl:amd64=13.24.1 Downloading dependency 275 of 411: libgl1:amd64=1.7.0-1+b2 Downloading dependency 276 of 411: libdrm-intel1:amd64=2.4.123-1 Downloading dependency 277 of 411: libdpkg-perl:amd64=1.22.14 Downloading dependency 278 of 411: libpango-1.0-0:amd64=1.56.1-1 Downloading dependency 279 of 411: libubsan1:amd64=14.2.0-16 Downloading dependency 280 of 411: g++-x86-64-linux-gnu:amd64=4:14.2.0-1 Downloading dependency 281 of 411: libxrandr2:amd64=2:1.5.4-1+b3 Downloading dependency 282 of 411: x11-common:amd64=1:7.7+24 Downloading dependency 283 of 411: liblcms2-2:amd64=2.16-2 Downloading dependency 284 of 411: libncbi-vdb3:amd64=3.0.9+dfsg-2 Downloading dependency 285 of 411: autoconf:amd64=2.72-3 Downloading dependency 286 of 411: bamtools:amd64=2.5.2+dfsg-6+b1 Downloading dependency 287 of 411: java-wrappers:amd64=0.5 Downloading dependency 288 of 411: libapparmor1:amd64=3.1.7-1+b3 Downloading dependency 289 of 411: libpam-modules:amd64=1.7.0-2 Downloading dependency 290 of 411: libncbi-ngs3:amd64=3.0.9+dfsg-7+b2 Downloading dependency 291 of 411: perl-modules-5.40:amd64=5.40.0-8 Downloading dependency 292 of 411: libpam0g:amd64=1.7.0-2 Downloading dependency 293 of 411: libx11-data:amd64=2:1.8.10-2 Downloading dependency 294 of 411: libcups2t64:amd64=2.4.10-2+b1 Downloading dependency 295 of 411: dbus-bin:amd64=1.16.0-1 Downloading dependency 296 of 411: libexpat1:amd64=2.6.4-1 Downloading dependency 297 of 411: libz3-4:amd64=4.13.3-1 Downloading dependency 298 of 411: bowtie2:amd64=2.5.4-1+b1 Downloading dependency 299 of 411: libhts3t64:amd64=1.20+ds-2 Downloading dependency 300 of 411: libwayland-egl1:amd64=1.23.1-1 Downloading dependency 301 of 411: po-debconf:amd64=1.0.21+nmu1 Downloading dependency 302 of 411: python3.13-minimal:amd64=3.13.2-1 Downloading dependency 303 of 411: openssl:amd64=3.4.0-2 Downloading dependency 304 of 411: python3-minimal:amd64=3.13.1-2 Downloading dependency 305 of 411: ncurses-base:amd64=6.5+20250125-2 Downloading dependency 306 of 411: dpkg:amd64=1.22.14 Downloading dependency 307 of 411: python3-setuptools:amd64=75.6.0-1 Downloading dependency 308 of 411: libcommons-parent-java:amd64=56-1 Downloading dependency 309 of 411: python3-pkg-resources:amd64=75.6.0-1 Downloading dependency 310 of 411: sysvinit-utils:amd64=3.13-1 Downloading dependency 311 of 411: libyaml-0-2:amd64=0.2.5-2 Downloading dependency 312 of 411: libjbig0:amd64=2.1-6.1+b2 Downloading dependency 313 of 411: perl:amd64=5.40.0-8 Downloading dependency 314 of 411: libcom-err2:amd64=1.47.2-1 Downloading dependency 315 of 411: libpangoft2-1.0-0:amd64=1.56.1-1 Downloading dependency 316 of 411: liblerc4:amd64=4.0.0+ds-5 Downloading dependency 317 of 411: libldap2:amd64=2.6.9+dfsg-1 Downloading dependency 318 of 411: libperl5.40:amd64=5.40.0-8 Downloading dependency 319 of 411: libgmp10:amd64=2:6.3.0+dfsg-3 Downloading dependency 320 of 411: libasound2-data:amd64=1.2.13-1 Downloading dependency 321 of 411: ncurses-bin:amd64=6.5+20250125-2 Downloading dependency 322 of 411: gettext-base:amd64=0.23.1-1 Downloading dependency 323 of 411: python3-more-itertools:amd64=10.6.0-1 Downloading dependency 324 of 411: libmpfr6:amd64=4.2.1-1+b2 Downloading dependency 325 of 411: libgomp1:amd64=14.2.0-16 Downloading dependency 326 of 411: libtinfo6:amd64=6.5+20250125-2 Downloading dependency 327 of 411: racon:amd64=1.5.0-3 Downloading dependency 328 of 411: systemd-sysv:amd64=257.2-3 Downloading dependency 329 of 411: libpipeline1:amd64=1.5.8-1 Downloading dependency 330 of 411: gcc-14-x86-64-linux-gnu:amd64=14.2.0-16 Downloading dependency 331 of 411: libjson-java:amd64=3.1.0+dfsg-2 Downloading dependency 332 of 411: base-passwd:amd64=3.6.6 Downloading dependency 333 of 411: libhtscodecs2:amd64=1.6.1-1 Downloading dependency 334 of 411: libjpeg62-turbo:amd64=1:2.1.5-3+b1 Downloading dependency 335 of 411: libssl3t64:amd64=3.4.0-2 Downloading dependency 336 of 411: libbz2-1.0:amd64=1.0.8-6 Downloading dependency 337 of 411: libavahi-client3:amd64=0.8-16 Downloading dependency 338 of 411: media-types:amd64=10.1.0 Downloading dependency 339 of 411: debconf:amd64=1.5.89 Downloading dependency 340 of 411: libffi8:amd64=3.4.6-1 Downloading dependency 341 of 411: libdrm2:amd64=2.4.123-1 Downloading dependency 342 of 411: libdeflate0:amd64=1.23-1+b1 Downloading dependency 343 of 411: python3-packaging:amd64=24.2-1 Downloading dependency 344 of 411: groff-base:amd64=1.23.0-7 Downloading dependency 345 of 411: patch:amd64=2.7.6-7 Downloading dependency 346 of 411: libnlopt0:amd64=2.7.1-6+b2 Downloading dependency 347 of 411: libgdbm6t64:amd64=1.24-2 Downloading dependency 348 of 411: ncbi-data:amd64=6.1.20170106+dfsg2-5 Downloading dependency 349 of 411: libisl23:amd64=0.27-1 Downloading dependency 350 of 411: python3-typeguard:amd64=4.4.1-1 Downloading dependency 351 of 411: libsasl2-2:amd64=2.1.28+dfsg1-8+b1 Downloading dependency 352 of 411: libdconf1:amd64=0.40.0-5 Downloading dependency 353 of 411: libtasn1-6:amd64=4.19.0-3+b3 Downloading dependency 354 of 411: at-spi2-common:amd64=2.55.2-1 Downloading dependency 355 of 411: default-jdk:amd64=2:1.21-76 Downloading dependency 356 of 411: libpng16-16t64:amd64=1.6.46-4 Downloading dependency 357 of 411: default-jre-headless:amd64=2:1.21-76 Downloading dependency 358 of 411: libsqlite3-0:amd64=3.46.1-1 Downloading dependency 359 of 411: libtirpc3t64:amd64=1.3.4+ds-1.3+b1 Downloading dependency 360 of 411: libbsd0:amd64=0.12.2-2 Downloading dependency 361 of 411: libnghttp2-14:amd64=1.64.0-1 Downloading dependency 362 of 411: cpp-14:amd64=14.2.0-16 Downloading dependency 363 of 411: tar:amd64=1.35+dfsg-3.1 Downloading dependency 364 of 411: gtk-update-icon-cache:amd64=4.16.12+ds-3 Downloading dependency 365 of 411: libdrm-amdgpu1:amd64=2.4.123-1 Downloading dependency 366 of 411: libpangocairo-1.0-0:amd64=1.56.1-1 Downloading dependency 367 of 411: zlib1g:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 368 of 411: libpciaccess0:amd64=0.17-3+b3 Downloading dependency 369 of 411: libsensors5:amd64=1:3.6.0-10+b1 Downloading dependency 370 of 411: libxcb-shm0:amd64=1.17.0-2+b1 Downloading dependency 371 of 411: libxom-java:amd64=1.3.9-1 Downloading dependency 372 of 411: bash:amd64=5.2.37-1 Downloading dependency 373 of 411: junit4:amd64=4.13.2-5 Downloading dependency 374 of 411: pilon:amd64=1.24-3 Downloading dependency 375 of 411: xz-utils:amd64=5.6.3-1+b1 Downloading dependency 376 of 411: librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 377 of 411: libnspr4:amd64=2:4.36-1 Downloading dependency 378 of 411: debianutils:amd64=5.21 Downloading dependency 379 of 411: libncurses6:amd64=6.5+20250125-2 Downloading dependency 380 of 411: dconf-service:amd64=0.40.0-5 Downloading dependency 381 of 411: dbus-system-bus-common:amd64=1.16.0-1 Downloading dependency 382 of 411: libmbedtls21:amd64=3.6.2-3 Downloading dependency 383 of 411: autotools-dev:amd64=20220109.1 Downloading dependency 384 of 411: libuv1t64:amd64=1.50.0-2 Downloading dependency 385 of 411: python3-jaraco.context:amd64=6.0.0-1Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Fetched 7984 B in 0s (394 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlkfi81d/python3-jaraco.context_6.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 java-common all 0.76 [6776 B] Fetched 6776 B in 0s (312 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk3y48ons/java-common_0.76_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Fetched 641 kB in 0s (7999 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8h5n527w/libcommons-compress-java_1.27.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Fetched 704 kB in 0s (51.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpja8eaeyy/libdb5.3t64_5.3.28+dfsg2-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libc6 amd64 2.40-6 [2816 kB] Fetched 2816 kB in 0s (40.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp1u0olr7/libc6_2.40-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libepoxy0 amd64 1.5.10-2 [193 kB] Fetched 193 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp85pln7c2/libepoxy0_1.5.10-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsemanage-common all 3.7-2.1 [7208 B] Fetched 7208 B in 0s (623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp0pv975a/libsemanage-common_3.7-2.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libgcc-14-dev amd64 14.2.0-16 [2671 kB] Fetched 2671 kB in 0s (49.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcdpspulr/libgcc-14-dev_14.2.0-16_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libsnappy-java all 1.1.10.7-1 [87.6 kB] Fetched 87.6 kB in 0s (3961 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6pvvdrck/libsnappy-java_1.1.10.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 binutils amd64 2.43.90.20250202-1 [265 kB] Fetched 265 kB in 0s (2146 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiy9s_i56/binutils_2.43.90.20250202-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 bsdutils amd64 1:2.40.4-3 [106 kB] Fetched 106 kB in 0s (5783 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.40.4-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpy6hw1pg6/bsdutils_2.40.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Fetched 36.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt2jav0u0/libmd0_1.1.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 tzdata all 2025a-1 [259 kB] Fetched 259 kB in 0s (9361 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4vx006is/tzdata_2025a-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpdgh_9r9a/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Fetched 681 kB in 0s (5840 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpscupf_hq/python3.12_3.12.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 adwaita-icon-theme all 48~beta-1 [504 kB] Fetched 504 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4othxvy/adwaita-icon-theme_48~beta-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Fetched 745 kB in 0s (2577 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxv_gnm_1/python3.13_3.13.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 libglib2.0-0t64 amd64 2.83.3-2 [1511 kB] Fetched 1511 kB in 0s (80.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbq9_5d82/libglib2.0-0t64_2.83.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 grep amd64 3.11-4 [431 kB] Fetched 431 kB in 0s (37.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcjisyur1/grep_3.11-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp48hjkxzp/libxcb-sync1_1.17.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Fetched 355 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo5jsxi__/libmbedcrypto16_3.6.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Fetched 147 kB in 0s (2424 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7tqcd3fc/libmbedx509-7_3.6.2-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libpcre2-8-0 amd64 10.44-5 [275 kB] Fetched 275 kB in 0s (6930 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpntfk3k6u/libpcre2-8-0_10.44-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Fetched 168 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpagww2325/libthai-data_0.1.29-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250207T152124Z sid/main amd64 util-linux amd64 2.40.4-3 [1214 kB] Fetched 1214 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9elajxwy/util-linux_2.40.4-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libnettle8t64 amd64 3.10-1+b1 [305 kB] Fetched 305 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu8ehmuch/libnettle8t64_3.10-1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250203T090921Z sid/main amd64 libcap2 amd64 1:2.66-5+b1 [27.8 kB] Fetched 27.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.66-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpjxev4_n8/libcap2_2.66-5+b1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp9sxfdhrs/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd 127.0.0.1 - - [28/Jul/2025 09:04:58] code 404, message File not found 127.0.0.1 - - [28/Jul/2025 09:04:58] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:41025 ./ InRelease 127.0.0.1 - - [28/Jul/2025 09:04:58] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:41025 ./ Release [462 B] 127.0.0.1 - - [28/Jul/2025 09:04:58] code 404, message File not found 127.0.0.1 - - [28/Jul/2025 09:04:58] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:41025 ./ Release.gpg 127.0.0.1 - - [28/Jul/2025 09:04:58] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:41025 ./ Packages [511 kB] Fetched 511 kB in 0s (18.5 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./gcc-14-base_14.2.0-16_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libc6_2.40-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libgcc-s1_14.2.0-16_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./mawk_1.3.4.20240905-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./base-files_13.6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libtinfo6_6.5%2b20250125-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./debianutils_5.21_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./bash_5.2.37-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libcap2_2.66-5%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libsystemd0_257.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./bsdutils_2.40.4-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libacl1_2.3.2-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libattr1_2.5.2-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libgmp10_6.3.0%2bdfsg-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libpcre2-8-0_10.44-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libselinux1_3.7-3.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libzstd1_1.5.6%2bdfsg-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libssl3t64_3.4.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./openssl-provider-legacy_3.4.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./coreutils_9.5-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./dash_0.5.12-11_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./diffutils_3.10-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libbz2-1.0_1.0.8-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./liblzma5_5.6.3-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libmd0_1.1.0-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./tar_1.35%2bdfsg-3.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./dpkg_1.22.14_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./findutils_4.10.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./grep_3.11-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./gzip_1.13-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./hostname_3.25_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./ncurses-bin_6.5%2b20250125-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libcrypt1_4.4.38-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./perl-base_5.40.0-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./sed_4.9-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libaudit-common_4.0.2-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libcap-ng0_0.8.5-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libaudit1_4.0.2-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./debconf_1.5.89_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libpam0g_1.7.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libpam-modules-bin_1.7.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libpam-modules_1.7.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libpam-runtime_1.7.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libblkid1_2.40.4-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libmount1_2.40.4-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libsmartcols1_2.40.4-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libudev1_257.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libuuid1_2.40.4-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./util-linux_2.40.4-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libdebconfclient0_0.277_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./base-passwd_3.6.6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./libc-bin_2.40-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./ncurses-base_6.5%2b20250125-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:04:59] "GET /./sysvinit-utils_3.13-1_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd 127.0.0.1 - - [28/Jul/2025 09:05:01] code 404, message File not found 127.0.0.1 - - [28/Jul/2025 09:05:01] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:41025 ./ InRelease 127.0.0.1 - - [28/Jul/2025 09:05:01] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:41025 ./ Release 127.0.0.1 - - [28/Jul/2025 09:05:01] code 404, message File not found 127.0.0.1 - - [28/Jul/2025 09:05:01] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:41025 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [28/Jul/2025 09:05:05] "GET /./mount_2.40.4-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:05] "GET /./libseccomp2_2.5.5-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:05] "GET /./libsystemd-shared_257.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:05] "GET /./libapparmor1_3.1.7-1%2bb3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:05] "GET /./systemd_257.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:05] "GET /./systemd-sysv_257.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:05] "GET /./libdbus-1-3_1.16.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:05] "GET /./dbus-bin_1.16.0-1_amd64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [28/Jul/2025 09:05:10] "GET /./miniasm_0.3%2bdfsg-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:10] "GET /./libedlib1_1.2.7-6%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:10] "GET /./scala-library_2.11.12-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:10] "GET /./java-wrappers_0.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:10] "GET /./racon_1.5.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:10] "GET /./default-jdk_1.21-76_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:10] "GET /./pilon_1.24-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 09:05:10] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp9sxfdhrs/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd Reading package lists... Building dependency tree... Reading state information... libhwasan0 is already the newest version (14.2.0-16). libhwasan0 set to manually installed. libtirpc-common is already the newest version (1.3.4+ds-1.3). libtirpc-common set to manually installed. dash is already the newest version (0.5.12-11). libx11-xcb1 is already the newest version (2:1.8.10-2). libx11-xcb1 set to manually installed. dconf-gsettings-backend is already the newest version (0.40.0-5). dconf-gsettings-backend set to manually installed. ncbi-vdb-data is already the newest version (3.0.9+dfsg-2). ncbi-vdb-data set to manually installed. libxcb-dri3-0 is already the newest version (1.17.0-2+b1). libxcb-dri3-0 set to manually installed. fontconfig-config is already the newest version (2.15.0-2). fontconfig-config set to manually installed. libfribidi0 is already the newest version (1.0.16-1). libfribidi0 set to manually installed. libxerces2-java is already the newest version (2.12.2-1). libxerces2-java set to manually installed. libslf4j-java is already the newest version (1.7.32-1). libslf4j-java set to manually installed. libgtk-3-common is already the newest version (3.24.48-4). libgtk-3-common set to manually installed. autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. dpkg-dev is already the newest version (1.22.14). dpkg-dev set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:14.2.0-1). gcc-x86-64-linux-gnu set to manually installed. libspoa7.0.0 is already the newest version (4.1.4-2+b1). libspoa7.0.0 set to manually installed. mawk is already the newest version (1.3.4.20240905-1). libxfixes3 is already the newest version (1:6.0.0-2+b4). libxfixes3 set to manually installed. libsemanage2 is already the newest version (3.7-2.1). libsemanage2 set to manually installed. fontconfig is already the newest version (2.15.0-2). fontconfig set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:14.2.0-1). cpp-x86-64-linux-gnu set to manually installed. libcc1-0 is already the newest version (14.2.0-16). libcc1-0 set to manually installed. libdrm-common is already the newest version (2.4.123-1). libdrm-common set to manually installed. libsystemd0 is already the newest version (257.2-3). gzip is already the newest version (1.13-1). libcommons-jexl2-java is already the newest version (2.1.1-6). libcommons-jexl2-java set to manually installed. librhino-java is already the newest version (1.7.15-1). librhino-java set to manually installed. libncursesw6 is already the newest version (6.5+20250125-2). libncursesw6 set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. libxkbcommon0 is already the newest version (1.7.0-2). libxkbcommon0 set to manually installed. libpython3.12-stdlib is already the newest version (3.12.9-1). libpython3.12-stdlib set to manually installed. libstdc++6 is already the newest version (14.2.0-16). libstdc++6 set to manually installed. libglapi-mesa is already the newest version (24.3.4-3). libglapi-mesa set to manually installed. python3-joblib is already the newest version (1.3.2-6). python3-joblib set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-8+b1). libsasl2-modules-db set to manually installed. ca-certificates-java is already the newest version (20240118). ca-certificates-java set to manually installed. libpixman-1-0 is already the newest version (0.44.0-3). libpixman-1-0 set to manually installed. debhelper is already the newest version (13.24.1). debhelper set to manually installed. passwd is already the newest version (1:4.16.0-7). passwd set to manually installed. libpam-systemd is already the newest version (257.2-3). libpam-systemd set to manually installed. samtools is already the newest version (1.20-3). samtools set to manually installed. openjdk-21-jdk-headless is already the newest version (21.0.6+7-1). openjdk-21-jdk-headless set to manually installed. mount is already the newest version (2.40.4-3). mount set to manually installed. default-jre is already the newest version (2:1.21-76). default-jre set to manually installed. libcairo-gobject2 is already the newest version (1.18.2-2). libcairo-gobject2 set to manually installed. python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. libavahi-common3 is already the newest version (0.8-16). libavahi-common3 set to manually installed. openjdk-21-jdk is already the newest version (21.0.6+7-1). openjdk-21-jdk set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-1). libxdmcp6 set to manually installed. libtool is already the newest version (2.5.4-3). libtool set to manually installed. libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. base-files is already the newest version (13.6). libgdk-pixbuf2.0-common is already the newest version (2.42.12+dfsg-2). libgdk-pixbuf2.0-common set to manually installed. libkeyutils1 is already the newest version (1.6.3-4). libkeyutils1 set to manually installed. fonts-dejavu-core is already the newest version (2.37-8). fonts-dejavu-core set to manually installed. libxi6 is already the newest version (2:1.8.2-1). libxi6 set to manually installed. fonts-dejavu-mono is already the newest version (2.37-8). fonts-dejavu-mono set to manually installed. libpython3-stdlib is already the newest version (3.13.1-2). libpython3-stdlib set to manually installed. libssw0 is already the newest version (1.1-15+b2). libssw0 set to manually installed. libvulkan1 is already the newest version (1.4.304.0-1). libvulkan1 set to manually installed. ncbi-blast+ is already the newest version (2.16.0+ds-6+b1). ncbi-blast+ set to manually installed. g++-14 is already the newest version (14.2.0-16). g++-14 set to manually installed. libasan8 is already the newest version (14.2.0-16). libasan8 set to manually installed. libx11-6 is already the newest version (2:1.8.10-2). libx11-6 set to manually installed. gcc-14-base is already the newest version (14.2.0-16). libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.2+b1). libxml2 set to manually installed. libatk1.0-0t64 is already the newest version (2.55.2-1). libatk1.0-0t64 set to manually installed. libidn2-0 is already the newest version (2.3.7-2+b1). libidn2-0 set to manually installed. libatk-bridge2.0-0t64 is already the newest version (2.55.2-1). libatk-bridge2.0-0t64 set to manually installed. systemd is already the newest version (257.2-3). systemd set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b1). libgtk-3-0t64 is already the newest version (3.24.48-4). libgtk-3-0t64 set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. libsharpyuv0 is already the newest version (1.5.0-0.1). libsharpyuv0 set to manually installed. libgcc-s1 is already the newest version (14.2.0-16). libxxf86vm1 is already the newest version (1:1.1.4-1+b4). libxxf86vm1 set to manually installed. libsmartcols1 is already the newest version (2.40.4-3). libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. libdrm-radeon1 is already the newest version (2.4.123-1). libdrm-radeon1 set to manually installed. libcolord2 is already the newest version (1.4.7-1+b2). libcolord2 set to manually installed. libnghttp3-9 is already the newest version (1.6.0-2). libnghttp3-9 set to manually installed. procps is already the newest version (2:4.0.4-7). procps set to manually installed. libc-bin is already the newest version (2.40-6). dh-strip-nondeterminism is already the newest version (1.14.1-1). dh-strip-nondeterminism set to manually installed. libstdc++-14-dev is already the newest version (14.2.0-16). libstdc++-14-dev set to manually installed. libwayland-server0 is already the newest version (1.23.1-1). libwayland-server0 set to manually installed. libpam-runtime is already the newest version (1.7.0-2). libsepol2 is already the newest version (3.7-1). libsepol2 set to manually installed. libatomic1 is already the newest version (14.2.0-16). libatomic1 set to manually installed. hostname is already the newest version (3.25). unzip is already the newest version (6.0-28). unzip set to manually installed. libbamtools2.5.2 is already the newest version (2.5.2+dfsg-6+b1). libbamtools2.5.2 set to manually installed. shared-mime-info is already the newest version (2.4-5+b2). shared-mime-info set to manually installed. openssl-provider-legacy is already the newest version (3.4.0-2). libtiff6 is already the newest version (4.5.1+git230720-5). libtiff6 set to manually installed. bwa is already the newest version (0.7.18-1). bwa set to manually installed. libicu72 is already the newest version (72.1-6). libicu72 set to manually installed. libudev1 is already the newest version (257.2-3). libxshmfence1 is already the newest version (1.3-1+b3). libxshmfence1 set to manually installed. libseccomp2 is already the newest version (2.5.5-2). libseccomp2 set to manually installed. dbus-session-bus-common is already the newest version (1.16.0-1). dbus-session-bus-common set to manually installed. libxml-commons-external-java is already the newest version (1.4.01-6). libxml-commons-external-java set to manually installed. libseqan2-dev is already the newest version (2.4.0+dfsg-16). libseqan2-dev set to manually installed. libcurl3t64-gnutls is already the newest version (8.11.1-1+b1). libcurl3t64-gnutls set to manually installed. spades is already the newest version (3.15.5+dfsg-8). spades set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.43.90.20250202-1). binutils-x86-64-linux-gnu set to manually installed. libglx-mesa0 is already the newest version (24.3.4-3). libglx-mesa0 set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b1). libxcb-randr0 set to manually installed. libattr1 is already the newest version (1:2.5.2-2). liblsan0 is already the newest version (14.2.0-16). liblsan0 set to manually installed. libmount1 is already the newest version (2.40.4-3). binutils-common is already the newest version (2.43.90.20250202-1). binutils-common set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b3). libxext6 set to manually installed. bsdextrautils is already the newest version (2.40.4-3). bsdextrautils set to manually installed. libpython3.12-minimal is already the newest version (3.12.9-1). libpython3.12-minimal set to manually installed. findutils is already the newest version (4.10.0-3). libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libxml-commons-resolver1.1-java is already the newest version (1.2-11). libxml-commons-resolver1.1-java set to manually installed. libwayland-cursor0 is already the newest version (1.23.1-1). libwayland-cursor0 set to manually installed. m4 is already the newest version (1.4.19-5). m4 set to manually installed. libcommons-lang3-java is already the newest version (3.17.0-1). libcommons-lang3-java set to manually installed. libxcb-xfixes0 is already the newest version (1.17.0-2+b1). libxcb-xfixes0 set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. python3-all is already the newest version (3.13.1-2). python3-all set to manually installed. libmagic1t64 is already the newest version (1:5.45-3+b1). libmagic1t64 set to manually installed. libngs-java is already the newest version (3.0.9+dfsg-7+b2). libngs-java set to manually installed. libxcb-glx0 is already the newest version (1.17.0-2+b1). libxcb-glx0 set to manually installed. dh-python is already the newest version (6.20250108). dh-python set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. init-system-helpers is already the newest version (1.68). libthai0 is already the newest version (0.1.29-2+b1). libthai0 set to manually installed. libitm1 is already the newest version (14.2.0-16). libitm1 set to manually installed. libnsl2 is already the newest version (1.3.0-3+b3). libnsl2 set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libxinerama1 is already the newest version (2:1.1.4-3+b3). libxinerama1 set to manually installed. liblzma5 is already the newest version (5.6.3-1+b1). python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. ca-certificates is already the newest version (20241223). ca-certificates set to manually installed. libxtst6 is already the newest version (2:1.2.5-1). libxtst6 set to manually installed. libdatrie1 is already the newest version (0.2.13-3+b1). libdatrie1 set to manually installed. libhtsjdk-java is already the newest version (4.1.3+dfsg-2). libhtsjdk-java set to manually installed. libllvm19 is already the newest version (1:19.1.7-1+b1). libllvm19 set to manually installed. libxau6 is already the newest version (1:1.0.11-1). libxau6 set to manually installed. diffutils is already the newest version (1:3.10-2). libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libctf0 is already the newest version (2.43.90.20250202-1). libctf0 set to manually installed. libgl1-mesa-dri is already the newest version (24.3.4-3). libgl1-mesa-dri set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-4). libgssapi-krb5-2 set to manually installed. linux-libc-dev is already the newest version (6.12.11-1). linux-libc-dev set to manually installed. libgnutls30t64 is already the newest version (3.8.8-2). libgnutls30t64 set to manually installed. cpp-14-x86-64-linux-gnu is already the newest version (14.2.0-16). cpp-14-x86-64-linux-gnu set to manually installed. openjdk-21-jre is already the newest version (21.0.6+7-1). openjdk-21-jre set to manually installed. libkrb5support0 is already the newest version (1.21.3-4). libkrb5support0 set to manually installed. libmagic-mgc is already the newest version (1:5.45-3+b1). libmagic-mgc set to manually installed. gcc-14 is already the newest version (14.2.0-16). gcc-14 set to manually installed. libcommons-codec-java is already the newest version (1.17.1-1). libcommons-codec-java set to manually installed. libxcb-present0 is already the newest version (1.17.0-2+b1). libxcb-present0 set to manually installed. libsystemd-shared is already the newest version (257.2-3). libsystemd-shared set to manually installed. libezmorph-java is already the newest version (1.0.6-4). libezmorph-java set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. libkrb5-3 is already the newest version (1.21.3-4). libkrb5-3 set to manually installed. libcap-ng0 is already the newest version (0.8.5-4). libcommons-collections4-java is already the newest version (4.4-2). libcommons-collections4-java set to manually installed. libngtcp2-16 is already the newest version (1.9.1-1). libngtcp2-16 set to manually installed. sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. make is already the newest version (4.4.1-1). make set to manually installed. libxcomposite1 is already the newest version (1:0.4.6-1). libxcomposite1 set to manually installed. dbus-daemon is already the newest version (1.16.0-1). dbus-daemon set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libfreetype6 is already the newest version (2.13.3+dfsg-1). libfreetype6 set to manually installed. libzstd1 is already the newest version (1.5.6+dfsg-2). libsframe1 is already the newest version (2.43.90.20250202-1). libsframe1 set to manually installed. libasound2t64 is already the newest version (1.2.13-1+b1). libasound2t64 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. libhamcrest-java is already the newest version (2.2-2). libhamcrest-java set to manually installed. dbus is already the newest version (1.16.0-1). dbus set to manually installed. coreutils is already the newest version (9.5-1+b1). libjaxen-java is already the newest version (1.1.6-5). libjaxen-java set to manually installed. python3-yaml is already the newest version (6.0.2-1+b1). python3-yaml set to manually installed. libunistring5 is already the newest version (1.3-1). libunistring5 set to manually installed. libtsan2 is already the newest version (14.2.0-16). libtsan2 set to manually installed. python3-typing-extensions is already the newest version (4.12.2-2). python3-typing-extensions set to manually installed. libpam-modules-bin is already the newest version (1.7.0-2). libfile-stripnondeterminism-perl is already the newest version (1.14.1-1). libfile-stripnondeterminism-perl set to manually installed. libcommons-beanutils-java is already the newest version (1.9.4-2). libcommons-beanutils-java set to manually installed. libxrender1 is already the newest version (1:0.9.10-1.1+b4). libxrender1 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libxcursor1 is already the newest version (1:1.2.3-1). libxcursor1 set to manually installed. libpython3.13-minimal is already the newest version (3.13.2-1). libpython3.13-minimal set to manually installed. libgraphite2-3 is already the newest version (1.3.14-2+b1). libgraphite2-3 set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. libgbm1 is already the newest version (24.3.4-3). libgbm1 set to manually installed. libgprofng0 is already the newest version (2.43.90.20250202-1). libgprofng0 set to manually installed. mesa-libgallium is already the newest version (24.3.4-3). mesa-libgallium set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. file is already the newest version (1:5.45-3+b1). file set to manually installed. libcommons-lang-java is already the newest version (2.6-10). libcommons-lang-java set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. libuuid1 is already the newest version (2.40.4-3). openjdk-21-jre-headless is already the newest version (21.0.6+7-1). openjdk-21-jre-headless set to manually installed. sed is already the newest version (4.9-2). libjsoncpp26 is already the newest version (1.9.6-3). libjsoncpp26 set to manually installed. libatspi2.0-0t64 is already the newest version (2.55.2-1). libatspi2.0-0t64 set to manually installed. adduser is already the newest version (3.137). adduser set to manually installed. liblmdb0 is already the newest version (0.9.31-1+b2). liblmdb0 set to manually installed. libpcsclite1 is already the newest version (2.3.1-1). libpcsclite1 set to manually installed. libpython3.13-stdlib is already the newest version (3.13.2-1). libpython3.13-stdlib set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libcommons-io-java is already the newest version (2.18.0-1). libcommons-io-java set to manually installed. xkb-data is already the newest version (2.42-1). xkb-data set to manually installed. libwebp7 is already the newest version (1.5.0-0.1). libwebp7 set to manually installed. libsnappy1v5 is already the newest version (1.2.1-1+b1). libsnappy1v5 set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. libbinutils is already the newest version (2.43.90.20250202-1). libbinutils set to manually installed. libselinux1 is already the newest version (3.7-3.1). g++-14-x86-64-linux-gnu is already the newest version (14.2.0-16). g++-14-x86-64-linux-gnu set to manually installed. libglx0 is already the newest version (1.7.0-1+b2). libglx0 set to manually installed. libblkid1 is already the newest version (2.40.4-3). g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. libglvnd0 is already the newest version (1.7.0-1+b2). libglvnd0 set to manually installed. bcftools is already the newest version (1.20-2). bcftools set to manually installed. libnss3 is already the newest version (2:3.107-1). libnss3 set to manually installed. libwayland-client0 is already the newest version (1.23.1-1). libwayland-client0 set to manually installed. python3 is already the newest version (3.13.1-2). python3 set to manually installed. default-jdk-headless is already the newest version (2:1.21-76). default-jdk-headless set to manually installed. libgdk-pixbuf-2.0-0 is already the newest version (2.42.12+dfsg-2). libgdk-pixbuf-2.0-0 set to manually installed. netbase is already the newest version (6.4). netbase set to manually installed. libcairo2 is already the newest version (1.18.2-2). libcairo2 set to manually installed. libdebconfclient0 is already the newest version (0.277). libngs-jni is already the newest version (3.0.9+dfsg-7+b2). libngs-jni set to manually installed. libctf-nobfd0 is already the newest version (2.43.90.20250202-1). libctf-nobfd0 set to manually installed. libgif7 is already the newest version (5.2.2-1+b1). libgif7 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b6). libbrotli1 set to manually installed. libapache-pom-java is already the newest version (33-2). libapache-pom-java set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. login.defs is already the newest version (1:4.16.0-7). login.defs set to manually installed. miniasm is already the newest version (0.3+dfsg-4). miniasm set to manually installed. perl-base is already the newest version (5.40.0-8). libc-dev-bin is already the newest version (2.40-6). libc-dev-bin set to manually installed. libxdamage1 is already the newest version (1:1.1.6-1+b2). libxdamage1 set to manually installed. libhogweed6t64 is already the newest version (3.10-1+b1). libhogweed6t64 set to manually installed. libedlib1 is already the newest version (1.2.7-6+b2). libedlib1 set to manually installed. libcloudproviders0 is already the newest version (0.3.6-1+b1). libcloudproviders0 set to manually installed. gettext is already the newest version (0.23.1-1). gettext set to manually installed. libsensors-config is already the newest version (1:3.6.0-10). libsensors-config set to manually installed. libquadmath0 is already the newest version (14.2.0-16). libquadmath0 set to manually installed. libsnappy-jni is already the newest version (1.1.10.7-1). libsnappy-jni set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). libc6-dev is already the newest version (2.40-6). libc6-dev set to manually installed. libedit2 is already the newest version (3.1-20250104-1). libedit2 set to manually installed. python3.12-minimal is already the newest version (3.12.9-1). python3.12-minimal set to manually installed. scala-library is already the newest version (2.11.12-5). scala-library set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libharfbuzz0b is already the newest version (10.2.0-1). libharfbuzz0b set to manually installed. libavahi-common-data is already the newest version (0.8-16). libavahi-common-data set to manually installed. libcommons-collections3-java is already the newest version (3.2.2-3). libcommons-collections3-java set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. libcommons-logging-java is already the newest version (1.3.0-1). libcommons-logging-java set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.9.1-1). libngtcp2-crypto-gnutls8 set to manually installed. dbus-user-session is already the newest version (1.16.0-1). dbus-user-session set to manually installed. libfontconfig1 is already the newest version (2.15.0-2). libfontconfig1 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b1). libxcb1 set to manually installed. libdbus-1-3 is already the newest version (1.16.0-1). libdbus-1-3 set to manually installed. libproc2-0 is already the newest version (2:4.0.4-7). libproc2-0 set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b1). libxcb-render0 set to manually installed. automake is already the newest version (1:1.17-3). automake set to manually installed. libk5crypto3 is already the newest version (1.21.3-4). libk5crypto3 set to manually installed. libdebhelper-perl is already the newest version (13.24.1). libdebhelper-perl set to manually installed. libgl1 is already the newest version (1.7.0-1+b2). libgl1 set to manually installed. libdrm-intel1 is already the newest version (2.4.123-1). libdrm-intel1 set to manually installed. libdpkg-perl is already the newest version (1.22.14). libdpkg-perl set to manually installed. libpango-1.0-0 is already the newest version (1.56.1-1). libpango-1.0-0 set to manually installed. libubsan1 is already the newest version (14.2.0-16). libubsan1 set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:14.2.0-1). g++-x86-64-linux-gnu set to manually installed. libxrandr2 is already the newest version (2:1.5.4-1+b3). libxrandr2 set to manually installed. x11-common is already the newest version (1:7.7+24). x11-common set to manually installed. liblcms2-2 is already the newest version (2.16-2). liblcms2-2 set to manually installed. libncbi-vdb3 is already the newest version (3.0.9+dfsg-2). libncbi-vdb3 set to manually installed. autoconf is already the newest version (2.72-3). autoconf set to manually installed. bamtools is already the newest version (2.5.2+dfsg-6+b1). bamtools set to manually installed. java-wrappers is already the newest version (0.5). java-wrappers set to manually installed. libapparmor1 is already the newest version (3.1.7-1+b3). libapparmor1 set to manually installed. libpam-modules is already the newest version (1.7.0-2). libncbi-ngs3 is already the newest version (3.0.9+dfsg-7+b2). libncbi-ngs3 set to manually installed. perl-modules-5.40 is already the newest version (5.40.0-8). perl-modules-5.40 set to manually installed. libpam0g is already the newest version (1.7.0-2). libx11-data is already the newest version (2:1.8.10-2). libx11-data set to manually installed. libcups2t64 is already the newest version (2.4.10-2+b1). libcups2t64 set to manually installed. dbus-bin is already the newest version (1.16.0-1). dbus-bin set to manually installed. libexpat1 is already the newest version (2.6.4-1). libexpat1 set to manually installed. libz3-4 is already the newest version (4.13.3-1). libz3-4 set to manually installed. bowtie2 is already the newest version (2.5.4-1+b1). bowtie2 set to manually installed. libhts3t64 is already the newest version (1.20+ds-2). libhts3t64 set to manually installed. libwayland-egl1 is already the newest version (1.23.1-1). libwayland-egl1 set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. python3.13-minimal is already the newest version (3.13.2-1). python3.13-minimal set to manually installed. openssl is already the newest version (3.4.0-2). openssl set to manually installed. python3-minimal is already the newest version (3.13.1-2). python3-minimal set to manually installed. ncurses-base is already the newest version (6.5+20250125-2). dpkg is already the newest version (1.22.14). python3-setuptools is already the newest version (75.6.0-1). python3-setuptools set to manually installed. libcommons-parent-java is already the newest version (56-1). libcommons-parent-java set to manually installed. python3-pkg-resources is already the newest version (75.6.0-1). python3-pkg-resources set to manually installed. sysvinit-utils is already the newest version (3.13-1). libyaml-0-2 is already the newest version (0.2.5-2). libyaml-0-2 set to manually installed. libjbig0 is already the newest version (2.1-6.1+b2). libjbig0 set to manually installed. perl is already the newest version (5.40.0-8). perl set to manually installed. libcom-err2 is already the newest version (1.47.2-1). libcom-err2 set to manually installed. libpangoft2-1.0-0 is already the newest version (1.56.1-1). libpangoft2-1.0-0 set to manually installed. liblerc4 is already the newest version (4.0.0+ds-5). liblerc4 set to manually installed. libldap2 is already the newest version (2.6.9+dfsg-1). libldap2 set to manually installed. libperl5.40 is already the newest version (5.40.0-8). libperl5.40 set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). libasound2-data is already the newest version (1.2.13-1). libasound2-data set to manually installed. ncurses-bin is already the newest version (6.5+20250125-2). gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. python3-more-itertools is already the newest version (10.6.0-1). python3-more-itertools set to manually installed. libmpfr6 is already the newest version (4.2.1-1+b2). libmpfr6 set to manually installed. libgomp1 is already the newest version (14.2.0-16). libgomp1 set to manually installed. libtinfo6 is already the newest version (6.5+20250125-2). racon is already the newest version (1.5.0-3). racon set to manually installed. systemd-sysv is already the newest version (257.2-3). systemd-sysv set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. gcc-14-x86-64-linux-gnu is already the newest version (14.2.0-16). gcc-14-x86-64-linux-gnu set to manually installed. libjson-java is already the newest version (3.1.0+dfsg-2). libjson-java set to manually installed. base-passwd is already the newest version (3.6.6). libhtscodecs2 is already the newest version (1.6.1-1). libhtscodecs2 set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.5-3+b1). libjpeg62-turbo set to manually installed. libssl3t64 is already the newest version (3.4.0-2). libbz2-1.0 is already the newest version (1.0.8-6). libavahi-client3 is already the newest version (0.8-16). libavahi-client3 set to manually installed. media-types is already the newest version (10.1.0). media-types set to manually installed. debconf is already the newest version (1.5.89). libffi8 is already the newest version (3.4.6-1). libffi8 set to manually installed. libdrm2 is already the newest version (2.4.123-1). libdrm2 set to manually installed. libdeflate0 is already the newest version (1.23-1+b1). libdeflate0 set to manually installed. python3-packaging is already the newest version (24.2-1). python3-packaging set to manually installed. groff-base is already the newest version (1.23.0-7). groff-base set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. libnlopt0 is already the newest version (2.7.1-6+b2). libnlopt0 set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. ncbi-data is already the newest version (6.1.20170106+dfsg2-5). ncbi-data set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. python3-typeguard is already the newest version (4.4.1-1). python3-typeguard set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-8+b1). libsasl2-2 set to manually installed. libdconf1 is already the newest version (0.40.0-5). libdconf1 set to manually installed. libtasn1-6 is already the newest version (4.19.0-3+b3). libtasn1-6 set to manually installed. at-spi2-common is already the newest version (2.55.2-1). at-spi2-common set to manually installed. default-jdk is already the newest version (2:1.21-76). default-jdk set to manually installed. libpng16-16t64 is already the newest version (1.6.46-4). libpng16-16t64 set to manually installed. default-jre-headless is already the newest version (2:1.21-76). default-jre-headless set to manually installed. libsqlite3-0 is already the newest version (3.46.1-1). libsqlite3-0 set to manually installed. libtirpc3t64 is already the newest version (1.3.4+ds-1.3+b1). libtirpc3t64 set to manually installed. libbsd0 is already the newest version (0.12.2-2). libbsd0 set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1). libnghttp2-14 set to manually installed. cpp-14 is already the newest version (14.2.0-16). cpp-14 set to manually installed. tar is already the newest version (1.35+dfsg-3.1). gtk-update-icon-cache is already the newest version (4.16.12+ds-3). gtk-update-icon-cache set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.123-1). libdrm-amdgpu1 set to manually installed. libpangocairo-1.0-0 is already the newest version (1.56.1-1). libpangocairo-1.0-0 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libpciaccess0 is already the newest version (0.17-3+b3). libpciaccess0 set to manually installed. libsensors5 is already the newest version (1:3.6.0-10+b1). libsensors5 set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b1). libxcb-shm0 set to manually installed. libxom-java is already the newest version (1.3.9-1). libxom-java set to manually installed. bash is already the newest version (5.2.37-1). junit4 is already the newest version (4.13.2-5). junit4 set to manually installed. pilon is already the newest version (1.24-3). pilon set to manually installed. xz-utils is already the newest version (5.6.3-1+b1). xz-utils set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. libnspr4 is already the newest version (2:4.36-1). libnspr4 set to manually installed. debianutils is already the newest version (5.21). libncurses6 is already the newest version (6.5+20250125-2). libncurses6 set to manually installed. dconf-service is already the newest version (0.40.0-5). dconf-service set to manually installed. dbus-system-bus-common is already the newest version (1.16.0-1). dbus-system-bus-common set to manually installed. libmbedtls21 is already the newest version (3.6.2-3). libmbedtls21 set to manually installed. autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. libuv1t64 is already the newest version (1.50.0-2). libuv1t64 set to manually installed. python3-jaraco.context is already the newest version (6.0.0-1). python3-jaraco.context set to manually installed. java-common is already the newest version (0.76). java-common set to manually installed. libcommons-compress-java is already the newest version (1.27.1-2). libcommons-compress-java set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libc6 is already the newest version (2.40-6). libepoxy0 is already the newest version (1.5.10-2). libepoxy0 set to manually installed. libsemanage-common is already the newest version (3.7-2.1). libsemanage-common set to manually installed. libgcc-14-dev is already the newest version (14.2.0-16). libgcc-14-dev set to manually installed. libsnappy-java is already the newest version (1.1.10.7-1). libsnappy-java set to manually installed. binutils is already the newest version (2.43.90.20250202-1). binutils set to manually installed. bsdutils is already the newest version (1:2.40.4-3). libmd0 is already the newest version (1.1.0-2+b1). tzdata is already the newest version (2025a-1). tzdata set to manually installed. libaudit-common is already the newest version (1:4.0.2-2). python3.12 is already the newest version (3.12.9-1). python3.12 set to manually installed. adwaita-icon-theme is already the newest version (48~beta-1). adwaita-icon-theme set to manually installed. python3.13 is already the newest version (3.13.2-1). python3.13 set to manually installed. libglib2.0-0t64 is already the newest version (2.83.3-2). libglib2.0-0t64 set to manually installed. grep is already the newest version (3.11-4). libxcb-sync1 is already the newest version (1.17.0-2+b1). libxcb-sync1 set to manually installed. libmbedcrypto16 is already the newest version (3.6.2-3). libmbedcrypto16 set to manually installed. libmbedx509-7 is already the newest version (3.6.2-3). libmbedx509-7 set to manually installed. libpcre2-8-0 is already the newest version (10.44-5). libthai-data is already the newest version (0.1.29-2). libthai-data set to manually installed. util-linux is already the newest version (2.40.4-3). libnettle8t64 is already the newest version (3.10-1+b1). libnettle8t64 set to manually installed. libcap2 is already the newest version (1:2.66-5+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd (Reading database ... 25730 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.XWHtIdJYnd... I: success in 84.3824 seconds Downloading dependency 386 of 411: java-common:amd64=0.76 Downloading dependency 387 of 411: libcommons-compress-java:amd64=1.27.1-2 Downloading dependency 388 of 411: libdb5.3t64:amd64=5.3.28+dfsg2-9 Downloading dependency 389 of 411: libc6:amd64=2.40-6 Downloading dependency 390 of 411: libepoxy0:amd64=1.5.10-2 Downloading dependency 391 of 411: libsemanage-common:amd64=3.7-2.1 Downloading dependency 392 of 411: libgcc-14-dev:amd64=14.2.0-16 Downloading dependency 393 of 411: libsnappy-java:amd64=1.1.10.7-1 Downloading dependency 394 of 411: binutils:amd64=2.43.90.20250202-1 Downloading dependency 395 of 411: bsdutils:amd64=1:2.40.4-3 Downloading dependency 396 of 411: libmd0:amd64=1.1.0-2+b1 Downloading dependency 397 of 411: tzdata:amd64=2025a-1 Downloading dependency 398 of 411: libaudit-common:amd64=1:4.0.2-2 Downloading dependency 399 of 411: python3.12:amd64=3.12.9-1 Downloading dependency 400 of 411: adwaita-icon-theme:amd64=48~beta-1 Downloading dependency 401 of 411: python3.13:amd64=3.13.2-1 Downloading dependency 402 of 411: libglib2.0-0t64:amd64=2.83.3-2 Downloading dependency 403 of 411: grep:amd64=3.11-4 Downloading dependency 404 of 411: libxcb-sync1:amd64=1.17.0-2+b1 Downloading dependency 405 of 411: libmbedcrypto16:amd64=3.6.2-3 Downloading dependency 406 of 411: libmbedx509-7:amd64=3.6.2-3 Downloading dependency 407 of 411: libpcre2-8-0:amd64=10.44-5 Downloading dependency 408 of 411: libthai-data:amd64=0.1.29-2 Downloading dependency 409 of 411: util-linux:amd64=2.40.4-3 Downloading dependency 410 of 411: libnettle8t64:amd64=3.10-1+b1 Downloading dependency 411 of 411: libcap2:amd64=1:2.66-5+b1 env --chdir=/srv/rebuilderd/tmp/rebuilderdlLGiNZ/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1738787231 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildmvvH2a/debrebuild.sbuildrc.c9w095ayg3wS sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildmvvH2a/debrebuild.tar.HtSZuCpJcZT3 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=unicycler-0.5.1+dfsg /srv/rebuilderd/tmp/rebuilderdlLGiNZ/inputs/unicycler_0.5.1+dfsg-3.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3 (07 June 2025) on osuosl4-amd64.reproducible.osuosl.org +==============================================================================+ | unicycler 0.5.1+dfsg-3 (amd64) Mon, 28 Jul 2025 09:06:24 +0000 | +==============================================================================+ Package: unicycler Version: 0.5.1+dfsg-3 Source Version: 0.5.1+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildmvvH2a/debrebuild.tar.HtSZuCpJcZT3 to /srv/rebuilderd/tmp/tmp.sbuild.Eh7Xx7BRkv... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Mon, 28 Jul 2025 09:06:30 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdlLGiNZ/inputs/unicycler_0.5.1+dfsg-3.dsc exists in /srv/rebuilderd/tmp/rebuilderdlLGiNZ/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 28 Jul 2025 09:06:32 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, default-jdk, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14), libseqan2-dev, zlib1g-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, default-jdk, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14), libseqan2-dev, zlib1g-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-6BGVsC/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Mon, 28 Jul 2025 09:06:36 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Mon, 28 Jul 2025 09:06:36 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.38+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.38-1 (2025-07-16) amd64 (x86_64) Toolchain package versions: binutils_2.43.90.20250202-1 dpkg-dev_1.22.14 g++-14_14.2.0-16 gcc-14_14.2.0-16 libc6-dev_2.40-6 libstdc++-14-dev_14.2.0-16 libstdc++6_14.2.0-16 linux-libc-dev_6.12.11-1 Package versions: adduser_3.137 adwaita-icon-theme_48~beta-1 at-spi2-common_2.55.2-1 autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 bamtools_2.5.2+dfsg-6+b1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1 bcftools_1.20-2 binutils_2.43.90.20250202-1 binutils-common_2.43.90.20250202-1 binutils-x86-64-linux-gnu_2.43.90.20250202-1 bowtie2_2.5.4-1+b1 bsdextrautils_2.40.4-3 bsdutils_1:2.40.4-3 build-essential_12.12 bwa_0.7.18-1 bzip2_1.0.8-6 ca-certificates_20241223 ca-certificates-java_20240118 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-16 cpp-14-x86-64-linux-gnu_14.2.0-16 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-11 dbus_1.16.0-1 dbus-bin_1.16.0-1 dbus-daemon_1.16.0-1 dbus-session-bus-common_1.16.0-1 dbus-system-bus-common_1.16.0-1 dbus-user-session_1.16.0-1 dconf-gsettings-backend_0.40.0-5 dconf-service_0.40.0-5 debconf_1.5.89 debhelper_13.24.1 debianutils_5.21 default-jdk_2:1.21-76 default-jdk-headless_2:1.21-76 default-jre_2:1.21-76 default-jre-headless_2:1.21-76 dh-autoreconf_20 dh-python_6.20250108 dh-strip-nondeterminism_1.14.1-1 diffutils_1:3.10-2 dpkg_1.22.14 dpkg-dev_1.22.14 dwz_0.15-1+b1 file_1:5.45-3+b1 findutils_4.10.0-3 fontconfig_2.15.0-2 fontconfig-config_2.15.0-2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-16 g++-14-x86-64-linux-gnu_14.2.0-16 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-16 gcc-14-base_14.2.0-16 gcc-14-x86-64-linux-gnu_14.2.0-16 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gtk-update-icon-cache_4.16.12+ds-3 gzip_1.13-1 hicolor-icon-theme_0.18-2 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 java-common_0.76 java-wrappers_0.5 junit4_4.13.2-5 libacl1_2.3.2-2+b1 libapache-pom-java_33-2 libapparmor1_3.1.7-1+b3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-16 libasound2-data_1.2.13-1 libasound2t64_1.2.13-1+b1 libatk-bridge2.0-0t64_2.55.2-1 libatk1.0-0t64_2.55.2-1 libatomic1_14.2.0-16 libatspi2.0-0t64_2.55.2-1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libavahi-client3_0.8-16 libavahi-common-data_0.8-16 libavahi-common3_0.8-16 libbamtools2.5.2_2.5.2+dfsg-6+b1 libbinutils_2.43.90.20250202-1 libblkid1_2.40.4-3 libbrotli1_1.1.0-2+b6 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-6 libc-dev-bin_2.40-6 libc6_2.40-6 libc6-dev_2.40-6 libcairo-gobject2_1.18.2-2 libcairo2_1.18.2-2 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-16 libcloudproviders0_0.3.6-1+b1 libcolord2_1.4.7-1+b2 libcom-err2_1.47.2-1 libcommons-beanutils-java_1.9.4-2 libcommons-codec-java_1.17.1-1 libcommons-collections3-java_3.2.2-3 libcommons-collections4-java_4.4-2 libcommons-compress-java_1.27.1-2 libcommons-io-java_2.18.0-1 libcommons-jexl2-java_2.1.1-6 libcommons-lang-java_2.6-10 libcommons-lang3-java_3.17.0-1 libcommons-logging-java_1.3.0-1 libcommons-parent-java_56-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.43.90.20250202-1 libctf0_2.43.90.20250202-1 libcups2t64_2.4.10-2+b1 libcurl3t64-gnutls_8.11.1-1+b1 libdatrie1_0.2.13-3+b1 libdb5.3t64_5.3.28+dfsg2-9 libdbus-1-3_1.16.0-1 libdconf1_0.40.0-5 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdeflate0_1.23-1+b1 libdpkg-perl_1.22.14 libdrm-amdgpu1_2.4.123-1 libdrm-common_2.4.123-1 libdrm-intel1_2.4.123-1 libdrm-radeon1_2.4.123-1 libdrm2_2.4.123-1 libedit2_3.1-20250104-1 libedlib1_1.2.7-6+b2 libelf1t64_0.192-4 libepoxy0_1.5.10-2 libexpat1_2.6.4-1 libezmorph-java_1.0.6-4 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.1-1 libfontconfig1_2.15.0-2 libfreetype6_2.13.3+dfsg-1 libfribidi0_1.0.16-1 libgbm1_24.3.4-3 libgcc-14-dev_14.2.0-16 libgcc-s1_14.2.0-16 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgdk-pixbuf-2.0-0_2.42.12+dfsg-2 libgdk-pixbuf2.0-common_2.42.12+dfsg-2 libgif7_5.2.2-1+b1 libgl1_1.7.0-1+b2 libgl1-mesa-dri_24.3.4-3 libglapi-mesa_24.3.4-3 libglib2.0-0t64_2.83.3-2 libglvnd0_1.7.0-1+b2 libglx-mesa0_24.3.4-3 libglx0_1.7.0-1+b2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-16 libgprofng0_2.43.90.20250202-1 libgraphite2-3_1.3.14-2+b1 libgssapi-krb5-2_1.21.3-4 libgtk-3-0t64_3.24.48-4 libgtk-3-common_3.24.48-4 libhamcrest-java_2.2-2 libharfbuzz0b_10.2.0-1 libhogweed6t64_3.10-1+b1 libhts3t64_1.20+ds-2 libhtscodecs2_1.6.1-1 libhtsjdk-java_4.1.3+dfsg-2 libhwasan0_14.2.0-16 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libisl23_0.27-1 libitm1_14.2.0-16 libjansson4_2.14-2+b3 libjaxen-java_1.1.6-5 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-3+b1 libjson-java_3.1.0+dfsg-2 libjsoncpp26_1.9.6-3 libk5crypto3_1.21.3-4 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-4 libkrb5support0_1.21.3-4 liblcms2-2_2.16-2 libldap2_2.6.9+dfsg-1 liblerc4_4.0.0+ds-5 libllvm19_1:19.1.7-1+b1 liblmdb0_0.9.31-1+b2 liblsan0_14.2.0-16 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmbedcrypto16_3.6.2-3 libmbedtls21_3.6.2-3 libmbedx509-7_3.6.2-3 libmd0_1.1.0-2+b1 libmount1_2.40.4-3 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncbi-ngs3_3.0.9+dfsg-7+b2 libncbi-vdb3_3.0.9+dfsg-2 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linux-libc-dev_6.12.11-1 login.defs_1:4.16.0-7 m4_1.4.19-5 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mesa-libgallium_24.3.4-3 miniasm_0.3+dfsg-4 mount_2.40.4-3 ncbi-blast+_2.16.0+ds-6+b1 ncbi-data_6.1.20170106+dfsg2-5 ncbi-vdb-data_3.0.9+dfsg-2 ncurses-base_6.5+20250125-2 ncurses-bin_6.5+20250125-2 netbase_6.4 openjdk-21-jdk_21.0.6+7-1 openjdk-21-jdk-headless_21.0.6+7-1 openjdk-21-jre_21.0.6+7-1 openjdk-21-jre-headless_21.0.6+7-1 openssl_3.4.0-2 openssl-provider-legacy_3.4.0-2 passwd_1:4.16.0-7 patch_2.7.6-7 perl_5.40.0-8 perl-base_5.40.0-8 perl-modules-5.40_5.40.0-8 pilon_1.24-3 po-debconf_1.0.21+nmu1 procps_2:4.0.4-7 python3_3.13.1-2 python3-all_3.13.1-2 python3-autocommand_2.2.2-3 python3-inflect_7.3.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-joblib_1.3.2-6 python3-minimal_3.13.1-2 python3-more-itertools_10.6.0-1 python3-packaging_24.2-1 python3-pkg-resources_75.6.0-1 python3-setuptools_75.6.0-1 python3-typeguard_4.4.1-1 python3-typing-extensions_4.12.2-2 python3-yaml_6.0.2-1+b1 python3-zipp_3.21.0-1 python3.12_3.12.9-1 python3.12-minimal_3.12.9-1 python3.13_3.13.2-1 python3.13-minimal_3.13.2-1 racon_1.5.0-3 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 samtools_1.20-3 scala-library_2.11.12-5 sed_4.9-2 sensible-utils_0.0.24 shared-mime-info_2.4-5+b2 spades_3.15.5+dfsg-8 systemd_257.2-3 systemd-sysv_257.2-3 sysvinit-utils_3.13-1 tar_1.35+dfsg-3.1 tzdata_2025a-1 unzip_6.0-28 util-linux_2.40.4-3 x11-common_1:7.7+24 xkb-data_2.42-1 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 28 Jul 2025 09:06:36 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unicycler Binary: unicycler, unicycler-data Architecture: any all Version: 0.5.1+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Liubov Chuprikova Homepage: https://github.com/rrwick/Unicycler Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/unicycler Vcs-Git: https://salsa.debian.org/med-team/unicycler.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, default-jdk , bcftools, bowtie2 , miniasm, ncbi-blast+ , pilon , racon, samtools , spades (>= 3.14), libseqan2-dev, zlib1g-dev Package-List: unicycler deb science optional arch=any unicycler-data deb science optional arch=all Checksums-Sha1: 74c2faf619e98fc0db52308548185114eb302ede 14771244 unicycler_0.5.1+dfsg.orig.tar.xz 8631abef91c94f3b4b3549db953c93a95767ef27 12868 unicycler_0.5.1+dfsg-3.debian.tar.xz Checksums-Sha256: e4ff9b7bb236d3c1b43e97318f09d781428f7ae917b06dfe505c0d8da3ffad69 14771244 unicycler_0.5.1+dfsg.orig.tar.xz 399081dcea5f5dba5d2a72c51fd452c9e7fc265a3d8a20d003a7fcda3c4abd24 12868 unicycler_0.5.1+dfsg-3.debian.tar.xz Files: 22bef237ad14fd5fa44602f232e75a20 14771244 unicycler_0.5.1+dfsg.orig.tar.xz 49b9c91ad10f5af3b4c6fa3cb5e693cf 12868 unicycler_0.5.1+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmejyjwRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBolJA/+NfguskHDOo2nn5hJTrvvKB0uf7i0XccE zMRoITqQs1gOXK02o4KN359LpTNzIGZDXVXsB0nAL3lIb7yHDxMXUjLhbImx6Eox 3beC3tja4bvJsuMutqjPzpPFvnlKKyLmfHfMp207LEXJlbKfYJqHzt3pXsuPCBjU Fv4C2bSg9b/97vR5eqe1DT5fO9bJyCx81l8R2sH7p11PkFa0uWuy93YgS8QKWtkn v1wodDHD2GoyC3vqv2q4rQ6wSBL3VQFVo9rFzQS8WZ9yI+sm7SBrZmXZExG6qmcn u0mI7IpAJ6fpPLc/nxcHkCAWeN2wHBipdsrQPEsqK900ym6EcuMNZ1ngr3zTuLuk kf2wO1JTR3zcsWm52GeFxSxwaJtBUQ4iPpPuOm7L7ztbSTAt29wlu876SRSrtNps 3/2OajCbk9Bax37HSPTUJa2ny+8HVCvny2Hx23rfdHhcQtWmepn3Oog3k9WoCqAn XU7A9ECJ5B6Smc9wRl/dRFN5GLHFtRIK7447YMQ8bj7heDYxJ3QB1J46fkpIIKa3 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LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1738787231 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package unicycler dpkg-buildpackage: info: source version 0.5.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/unicycler-0.5.1+dfsg' find . -name __pycache__ -type d | xargs rm -rf make distclean make[2]: Entering directory '/build/reproducible-path/unicycler-0.5.1+dfsg' Platform: Linux Compiler: g++ 14.2.0 rm -f unicycler/src/minimap/bseq.o unicycler/src/minimap/misc.o unicycler/src/minimap/sketch.o unicycler/src/minimap/index.o unicycler/src/minimap/kthread.o unicycler/src/minimap/sdust.o unicycler/src/minimap/map.o unicycler/src/start_end_align.o unicycler/src/semi_global_align_exhaustive.o unicycler/src/scoredalignment.o unicycler/src/kmers.o unicycler/src/ref_seqs.o unicycler/src/overlap_align.o unicycler/src/string_functions.o unicycler/src/miniasm/dotter.o unicycler/src/miniasm/sdict.o unicycler/src/miniasm/asm.o unicycler/src/miniasm/sys.o unicycler/src/miniasm/paf.o unicycler/src/miniasm/hit.o unicycler/src/miniasm/asg.o unicycler/src/global_align.o unicycler/src/semi_global_align.o unicycler/src/minimap_align.o unicycler/src/random_alignments.o unicycler/src/path_align.o unicycler/src/consensus_align.o unicycler/src/miniasm_assembly.o rm -f unicycler/cpp_functions.so make[2]: Leaving directory '/build/reproducible-path/unicycler-0.5.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/unicycler-0.5.1+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.13 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/unicycler-0.5.1+dfsg' make make[2]: Entering directory '/build/reproducible-path/unicycler-0.5.1+dfsg' Platform: Linux Compiler: g++ 14.2.0 g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/minimap/bseq.o unicycler/src/minimap/bseq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/minimap/misc.o unicycler/src/minimap/misc.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/minimap/sketch.o unicycler/src/minimap/sketch.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/minimap/index.o unicycler/src/minimap/index.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/minimap/kthread.o unicycler/src/minimap/kthread.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/minimap/sdust.o unicycler/src/minimap/sdust.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/minimap/map.o unicycler/src/minimap/map.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/start_end_align.o unicycler/src/start_end_align.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/semi_global_align_exhaustive.o unicycler/src/semi_global_align_exhaustive.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/scoredalignment.o unicycler/src/scoredalignment.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/kmers.o unicycler/src/kmers.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/ref_seqs.o unicycler/src/ref_seqs.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/overlap_align.o unicycler/src/overlap_align.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/string_functions.o unicycler/src/string_functions.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/dotter.o unicycler/src/miniasm/dotter.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/sdict.o unicycler/src/miniasm/sdict.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/asm.o unicycler/src/miniasm/asm.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/sys.o unicycler/src/miniasm/sys.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/paf.o unicycler/src/miniasm/paf.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/hit.o unicycler/src/miniasm/hit.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/asg.o unicycler/src/miniasm/asg.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/global_align.o unicycler/src/global_align.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/semi_global_align.o unicycler/src/semi_global_align.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/minimap_align.o unicycler/src/minimap_align.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/random_alignments.o unicycler/src/random_alignments.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/path_align.o unicycler/src/path_align.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/consensus_align.o unicycler/src/consensus_align.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o unicycler/src/miniasm_assembly.o unicycler/src/miniasm_assembly.cpp g++ -std=c++14 -Iunicycler/include -fPIC -lrt -lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/unicycler-0.5.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-soname,unicycler/cpp_functions.so -o unicycler/cpp_functions.so unicycler/src/minimap/bseq.o unicycler/src/minimap/misc.o unicycler/src/minimap/sketch.o unicycler/src/minimap/index.o unicycler/src/minimap/kthread.o unicycler/src/minimap/sdust.o unicycler/src/minimap/map.o unicycler/src/start_end_align.o unicycler/src/semi_global_align_exhaustive.o unicycler/src/scoredalignment.o unicycler/src/kmers.o unicycler/src/ref_seqs.o unicycler/src/overlap_align.o unicycler/src/string_functions.o unicycler/src/miniasm/dotter.o unicycler/src/miniasm/sdict.o unicycler/src/miniasm/asm.o unicycler/src/miniasm/sys.o unicycler/src/miniasm/paf.o unicycler/src/miniasm/hit.o unicycler/src/miniasm/asg.o unicycler/src/global_align.o unicycler/src/semi_global_align.o unicycler/src/minimap_align.o unicycler/src/random_alignments.o unicycler/src/path_align.o unicycler/src/consensus_align.o unicycler/src/miniasm_assembly.o -Wl,-z,relro -Wl,-z,now -shared -lz make[2]: Leaving directory '/build/reproducible-path/unicycler-0.5.1+dfsg' dh_auto_build I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/path_finding.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/blast_func.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/assembly_graph_copy_depth.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/assembly_graph.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/unicycler_align.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/bridge_long_read.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/log.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/version.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/__init__.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/spades_func.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/bridge_common.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/assembly_graph_segment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/read_ref.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/settings.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/bridge_long_read_simple.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/bridge_spades_contig.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/minimap_alignment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/bridge_miniasm.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/miniasm_assembly.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/cpp_wrappers.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/misc.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/string_graph.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/bridge_loop_unroll.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/unicycler.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler copying unicycler/alignment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/path_finding.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/blast_func.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/assembly_graph_copy_depth.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/assembly_graph.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/unicycler_align.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/bridge_long_read.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/log.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/version.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/__init__.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/spades_func.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/bridge_common.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/assembly_graph_segment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/read_ref.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/settings.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/bridge_long_read_simple.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/bridge_spades_contig.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/minimap_alignment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/bridge_miniasm.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/miniasm_assembly.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/cpp_wrappers.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/misc.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/string_graph.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/bridge_loop_unroll.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/unicycler.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler copying unicycler/alignment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler make[1]: Leaving directory '/build/reproducible-path/unicycler-0.5.1+dfsg' dh_auto_test -a -O--buildsystem=pybuild I: pybuild pybuild:308: cp -a unicycler-runner.py /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build; cp -a unicycler/cpp_functions.so /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler; cp -a sample_data /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build I: pybuild base:311: cd /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build; python3.12 -m unittest discover -v test_attributes (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_attributes) ... ok test_dead_end_count (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_dead_end_count) ... ok test_filter_by_read_depth (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_filter_by_read_depth) ... ok test_forward_links (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_forward_links) ... ok test_get_all_gfa_link_lines (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_all_gfa_link_lines) ... ok test_get_estimated_sequence_len (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_estimated_sequence_len) ... ok test_get_median_read_depth (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_median_read_depth) ... ok test_get_n_segment_length (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_n_segment_length) ... ok test_get_total_length (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_total_length) ... ok test_get_total_length_no_overlaps (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_total_length_no_overlaps) ... ok test_links_match (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_links_match) Tests that each segment's forward links match up with its reverse complement's reverse ... ok test_load_paths (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_load_paths) ... ok test_normalise_read_depths (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_normalise_read_depths) ... ok test_remove_all_overlaps (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_remove_all_overlaps) ... ok test_remove_segments (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_remove_segments) ... ok test_remove_small_components (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_remove_small_components) ... ok test_reverse_links (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_reverse_links) ... ok test_save_specific_segments_to_fasta (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_save_specific_segments_to_fasta) ... ok test_save_to_fasta (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_save_to_fasta) ... ok test_save_to_fasta_length (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_save_to_fasta_length) ... ok test_save_to_gfa (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_save_to_gfa) This test saves the graph to GFA, loads the GFA graph and then compares the two graphs to ... ok test_segments (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_segments) ... ok test_sequence (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_sequence) ... ok test_total_dead_end_count (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_total_dead_end_count) ... ok test_add_link_1 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_add_link_1) ... ok test_add_link_2 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_add_link_2) ... ok test_all_segments_below_depth (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_all_segments_below_depth) ... ok test_attributes (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_attributes) ... ok test_bad_overlaps (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_bad_overlaps) ... ok test_dead_end_change_if_deleted (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_dead_end_change_if_deleted) ... ok test_dead_end_change_if_path_deleted (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_dead_end_change_if_path_deleted) ... ok test_dead_end_count (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_dead_end_count) ... ok test_filter_homopolymer_loops (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_filter_homopolymer_loops) ... ok test_forward_links (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_forward_links) ... ok test_get_connected_components_and_remove_link (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_connected_components_and_remove_link) ... ok test_get_connected_segments (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_connected_segments) ... ok test_get_exclusive_inputs (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_exclusive_inputs) ... ok test_get_exclusive_outputs (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_exclusive_outputs) ... ok test_get_mean_path_depth (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_mean_path_depth) ... ok test_get_median_read_depth (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_median_read_depth) ... ok test_get_next_available_seg_number (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_next_available_seg_number) ... ok test_get_path_sequence (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_path_sequence) ... ok test_get_simple_path (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_simple_path) ... ok test_get_total_length (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_total_length) ... ok test_get_total_length_no_overlaps (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_total_length_no_overlaps) ... ok test_lead_exclusively_from (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_lead_exclusively_from) ... ok test_lead_exclusively_to (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_lead_exclusively_to) ... ok test_links_match (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_links_match) Tests that each segment's forward links match up with its reverse complement's reverse ... ok test_merge_all_possible (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_merge_all_possible) ... ok test_merge_simple_path_1 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_merge_simple_path_1) ... ok test_merge_simple_path_2 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_merge_simple_path_2) ... ok test_merge_simple_path_3 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_merge_simple_path_3) ... ok test_normalise_read_depths (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_normalise_read_depths) ... ok test_remove_small_components (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_remove_small_components) ... ok test_remove_small_dead_ends (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_remove_small_dead_ends) ... ok test_reverse_links (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_reverse_links) ... ok test_segments (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_segments) ... ok test_seq_from_signed_seg_num (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_seq_from_signed_seg_num) ... ok test_sequence (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_sequence) ... ok test_total_dead_end_count (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_total_dead_end_count) ... ok test_expand_repeats_1 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_1) Tests that the common sequence in segments 3 and 4 (just a C) is moved onto segment 2. ... ok test_expand_repeats_2 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_2) Tests that the common sequence in segments 7 and 8 (GATTAGCG) is moved onto segment 6. ... ok test_expand_repeats_3 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_3) Tests that the common sequence on both strands of segment 1 is moved onto segment 2. ... ok test_expand_repeats_4 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_4) Tests that segment 5 isn't changed, because moving its common sequence (from each strand) ... ok test_expand_repeats_5 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_5) Tests that paths through the graph are unchanged by the repeat expansion. ... ok test_graph (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_graph) ... ok test_remove_zero_length_segs_1 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_1) Tests that segment 9638 has been removed. ... ok test_remove_zero_length_segs_10 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_10) Tests that segments 9125 and 9126 have been removed (results in a 3-way split). ... ok test_remove_zero_length_segs_11 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_11) Tests that segments 8854 and 8855 have been removed (in a simple path). ... ok test_remove_zero_length_segs_2 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_2) Tests that segment 5849 has been removed. ... ok test_remove_zero_length_segs_3 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_3) Tests that segment 6513 has not been removed (it's a junction point). ... ok test_remove_zero_length_segs_4 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_4) Tests that both segments 8851 and 8852 have been removed. ... ok test_remove_zero_length_segs_5 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_5) Tests that segment 4907 has not been removed (it's a junction point and a dead end). ... ok test_remove_zero_length_segs_6 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_6) Tests that segment 10029 has been removed (it's a dead end but not a junction). ... ok test_remove_zero_length_segs_7 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_7) Tests that segment 9822 has been removed (it's on a simple path). ... ok test_remove_zero_length_segs_8 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_8) Tests that segment 1 has been removed (it's isolated and unconnected). ... ok test_remove_zero_length_segs_9 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_9) Tests that segment 8232 has been removed. ... ok test_graph (test.test_assembly_graph.TestRepairMultiwayJunction.test_graph) ... ok test_repair_multi_way_junctions_1 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_1) ... ok test_repair_multi_way_junctions_2 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_2) ... ok test_repair_multi_way_junctions_3 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_3) ... ok test_repair_multi_way_junctions_4 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_4) ... ok test_repair_multi_way_junctions_5 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_5) ... ok test_repair_multi_way_junctions_6 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_6) ... ok test_merge_1 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_merge_1) Tests a particular part of the graph with merging and splitting. ... ok test_merge_split_1 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_merge_split_1) Tests a particular part of the graph with merging and splitting. ... ok test_merge_split_2 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_merge_split_2) Tests a particular part of the graph with merging and splitting. ... ok test_single_copy_segments_1 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_single_copy_segments_1) Tests large contigs from the largest replicon, all of which should have a copy depth of 1. ... ok test_single_copy_segments_2 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_single_copy_segments_2) Tests single copy contigs from a smaller, higher depth replicon. They should have a copy ... ok test_random_seq_no_start_gene (test.test_blast_func.TestBlastFunc.test_random_seq_no_start_gene) ... ok test_random_seq_with_exact_gene_forward_strand (test.test_blast_func.TestBlastFunc.test_random_seq_with_exact_gene_forward_strand) ... ok test_random_seq_with_exact_gene_reverse_strand (test.test_blast_func.TestBlastFunc.test_random_seq_with_exact_gene_reverse_strand) ... ok test_1bp_deletion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_1bp_deletion) ... ok test_1bp_insertion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_1bp_insertion) ... ok test_2bp_deletion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_2bp_deletion) ... ok test_2bp_insertion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_2bp_insertion) ... ok test_2bp_insertion_and_2bp_deletion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_2bp_insertion_and_2bp_deletion) ... ok test_long_perfect_alignment (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_long_perfect_alignment) ... ok test_one_mismatch (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_one_mismatch) ... ok test_perfect_alignment (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_perfect_alignment) ... ok test_random_seqs (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_random_seqs) This test aligns two random sequences of different length, making sure that the scores are ... ok test_shift_big_band (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_shift_big_band) This test has a 20 bp insertion near the start and a 20 bp deletion near the end, shifting ... ok test_shift_small_band (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_shift_small_band) This test uses the same sequences as the previous test, but uses a smaller bandwidth than ... ok test_consensus_different_qualities (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_different_qualities) ... ok test_consensus_with_all (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_all) ... ok test_consensus_with_deletions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_deletions) ... ok test_consensus_with_deletions_and_insertions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_deletions_and_insertions) ... ok test_consensus_with_insertions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_insertions) ... ok test_consensus_with_subs (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_subs) ... ok test_start_end_deletions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_start_end_deletions) ... ok test_start_end_insertions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_start_end_insertions) ... ok test_start_end_insertions_and_deletions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_start_end_insertions_and_deletions) ... ok test_two_way_consensus (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_two_way_consensus) ... ok test_makeblastdb_not_found (test.test_dependencies.TestDependencies.test_makeblastdb_not_found) ... ok test_no_rotate (test.test_dependencies.TestDependencies.test_no_rotate) ... ok test_spades_not_found (test.test_dependencies.TestDependencies.test_spades_not_found) ... ok test_tblastn_not_found (test.test_dependencies.TestDependencies.test_tblastn_not_found) ... ok test_verbosity_1 (test.test_dependencies.TestDependencies.test_verbosity_1) ... ok test_verbosity_2 (test.test_dependencies.TestDependencies.test_verbosity_2) ... ok test_basic_options (test.test_help_text.TestBasicHelpText.test_basic_options) ... ok test_extended_options (test.test_help_text.TestBasicHelpText.test_extended_options) ... ok test_output (test.test_help_text.TestBasicHelpText.test_output) ... ok test_return_code (test.test_help_text.TestBasicHelpText.test_return_code) ... ok test_title (test.test_help_text.TestBasicHelpText.test_title) ... ok test_error_message (test.test_help_text.TestEmptyCommand.test_error_message) ... ok test_output (test.test_help_text.TestEmptyCommand.test_output) ... ok test_return_code (test.test_help_text.TestEmptyCommand.test_return_code) ... ok test_basic_options (test.test_help_text.TestExtendedHelpText.test_basic_options) ... ok test_extended_options (test.test_help_text.TestExtendedHelpText.test_extended_options) ... ok test_output (test.test_help_text.TestExtendedHelpText.test_output) ... ok test_return_code (test.test_help_text.TestExtendedHelpText.test_return_code) ... ok test_title (test.test_help_text.TestExtendedHelpText.test_title) ... ok test_contig_placement_1 (test.test_miniasm_assembly.TestContigPlacement.test_contig_placement_1) This covers the case where the contig sequences are in the middle of the unitig sequences. ... ok test_contig_placement_2 (test.test_miniasm_assembly.TestContigPlacement.test_contig_placement_2) This covers the case where a contig sequence spans the circular junction of the unitig ... ok test_contig_placement_3 (test.test_miniasm_assembly.TestContigPlacement.test_contig_placement_3) This covers the case where the a contig sequence starts right at the beginning of the ... ok test_contig_placement_4 (test.test_miniasm_assembly.TestContigPlacement.test_contig_placement_4) This covers the case where the a contig sequence ends right at the end of the unitig ... ok test_add_line_breaks_to_sequence (test.test_misc.TestMiscFunctions.test_add_line_breaks_to_sequence) ... ok test_colour (test.test_misc.TestMiscFunctions.test_colour) ... ok test_flip_number_order (test.test_misc.TestMiscFunctions.test_flip_number_order) ... ok test_float_to_str (test.test_misc.TestMiscFunctions.test_float_to_str) ... ok test_get_compression_type (test.test_misc.TestMiscFunctions.test_get_compression_type) ... ok test_get_nice_header (test.test_misc.TestMiscFunctions.test_get_nice_header) ... ok test_get_num_agreement (test.test_misc.TestMiscFunctions.test_get_num_agreement) ... ok test_get_percentile (test.test_misc.TestMiscFunctions.test_get_percentile) ... ok test_get_random_base (test.test_misc.TestMiscFunctions.test_get_random_base) ... ok test_get_random_sequence (test.test_misc.TestMiscFunctions.test_get_random_sequence) ... ok test_get_sequence_file_type (test.test_misc.TestMiscFunctions.test_get_sequence_file_type) ... ok test_int_to_str (test.test_misc.TestMiscFunctions.test_int_to_str) ... ok test_is_header_spades_format (test.test_misc.TestMiscFunctions.test_is_header_spades_format) ... ok test_len_without_format (test.test_misc.TestMiscFunctions.test_len_without_format) ... ok test_load_fasta (test.test_misc.TestMiscFunctions.test_load_fasta) ... ok test_load_fasta_with_full_header (test.test_misc.TestMiscFunctions.test_load_fasta_with_full_header) ... ok test_remove_formatting (test.test_misc.TestMiscFunctions.test_remove_formatting) ... ok test_reverse_complement (test.test_misc.TestMiscFunctions.test_reverse_complement) ... ok test_round_to_nearest_odd (test.test_misc.TestMiscFunctions.test_round_to_nearest_odd) ... ok test_score_function (test.test_misc.TestMiscFunctions.test_score_function) ... ok test_spades_version_parsing_1 (test.test_misc.TestMiscFunctions.test_spades_version_parsing_1) ... ok test_spades_version_parsing_2 (test.test_misc.TestMiscFunctions.test_spades_version_parsing_2) ... ok test_spades_version_parsing_3 (test.test_misc.TestMiscFunctions.test_spades_version_parsing_3) ... ok test_spades_version_parsing_4 (test.test_misc.TestMiscFunctions.test_spades_version_parsing_4) ... ok test_spades_version_status_1 (test.test_misc.TestMiscFunctions.test_spades_version_status_1) ... ok test_spades_version_status_10 (test.test_misc.TestMiscFunctions.test_spades_version_status_10) ... ok test_spades_version_status_11 (test.test_misc.TestMiscFunctions.test_spades_version_status_11) ... ok test_spades_version_status_12 (test.test_misc.TestMiscFunctions.test_spades_version_status_12) ... ok test_spades_version_status_13 (test.test_misc.TestMiscFunctions.test_spades_version_status_13) ... ok test_spades_version_status_14 (test.test_misc.TestMiscFunctions.test_spades_version_status_14) ... ok test_spades_version_status_2 (test.test_misc.TestMiscFunctions.test_spades_version_status_2) ... ok test_spades_version_status_3 (test.test_misc.TestMiscFunctions.test_spades_version_status_3) ... ok test_spades_version_status_4 (test.test_misc.TestMiscFunctions.test_spades_version_status_4) ... ok test_spades_version_status_5 (test.test_misc.TestMiscFunctions.test_spades_version_status_5) ... ok test_spades_version_status_6 (test.test_misc.TestMiscFunctions.test_spades_version_status_6) ... ok test_spades_version_status_7 (test.test_misc.TestMiscFunctions.test_spades_version_status_7) ... ok test_spades_version_status_8 (test.test_misc.TestMiscFunctions.test_spades_version_status_8) ... ok test_spades_version_status_9 (test.test_misc.TestMiscFunctions.test_spades_version_status_9) ... ok test_strip_read_extensions_capitals (test.test_misc.TestMiscFunctions.test_strip_read_extensions_capitals) ... ok test_strip_read_extensions_fa (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fa) ... ok test_strip_read_extensions_fasta (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fasta) ... ok test_strip_read_extensions_fastq (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fastq) ... ok test_strip_read_extensions_fastq_extra_dots (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fastq_extra_dots) ... ok test_strip_read_extensions_fna (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fna) ... ok test_strip_read_extensions_fq (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fq) ... ok test_strip_read_extensions_other_fasta (test.test_misc.TestMiscFunctions.test_strip_read_extensions_other_fasta) ... ok test_weighted_average (test.test_misc.TestMiscFunctions.test_weighted_average) ... ok test_weighted_average_list (test.test_misc.TestMiscFunctions.test_weighted_average_list) ... ok test_absolute_paths (test.test_options.TestUnicyclerOptions.test_absolute_paths) ... ok test_defaults (test.test_options.TestUnicyclerOptions.test_defaults) ... ok test_modes (test.test_options.TestUnicyclerOptions.test_modes) ... ok test_relative_paths (test.test_options.TestUnicyclerOptions.test_relative_paths) ... ok test_long_contained_read (test.test_semi_global_alignment.TestContainedReadAlignments.test_long_contained_read) ... ok test_medium_contained_read (test.test_semi_global_alignment.TestContainedReadAlignments.test_medium_contained_read) ... ok test_short_contained_read (test.test_semi_global_alignment.TestContainedReadAlignments.test_short_contained_read) ... ok test_end_to_end (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_end_to_end) ... ok test_read_contained_1 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_contained_1) ... ok test_read_contained_2 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_contained_2) ... ok test_read_contained_3 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_contained_3) ... ok test_read_end_overlap (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_end_overlap) ... ok test_read_start_overlap (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_start_overlap) ... ok test_ref_contained_1 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_ref_contained_1) ... ok test_ref_contained_2 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_ref_contained_2) ... ok test_ref_contained_3 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_ref_contained_3) ... ok test_tough_alignment_0 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_0) The beginning of the reference in this case is repetitive, which was able to throw off ... ok test_tough_alignment_1 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_1) This read goes through a repetitive area, which means that the densest area of common ... ok test_tough_alignment_10 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_10) This is a very low quality read. ... ok test_tough_alignment_11 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_11) Repeats at one end of the read. ... ok test_tough_alignment_12 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_12) Repeats at one end of the read. ... ok test_tough_alignment_13 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_13) This read caused a crash before I added the getMaxSeedChainGapArea function in ... ok test_tough_alignment_14 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_14) This read caused a crash before I added made a few fixes to the line tracing code. It won't ... ok test_tough_alignment_15 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_15) This read should hit the same reference twice, even at low sensitivities. ... ok test_tough_alignment_2 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_2) This read goes through a repetitive area, which means that the densest area of common ... ok test_tough_alignment_3 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_3) The first line tracing of this alignment is bad but uses all the points. This previously ... ok test_tough_alignment_4 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_4) Like so many of these tough ones, this case has a read which enters a repetitive region ... ok test_tough_alignment_5 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_5) ... ok test_tough_alignment_6 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_6) This one misses the right alignment on lower sensitivities because the line tracing never ... ok test_tough_alignment_7 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_7) This one misses the right alignment on lower sensitivities because the line tracing never ... ok test_tough_alignment_8 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_8) This has a weird change in slope - the read has a good part and a bad part. Ideally the ... ok test_tough_alignment_9 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_9) This is a very low quality read. ... ok test_bad_fastq_1 (test.test_spades_func.TestSPAdesFunc.test_bad_fastq_1) ... ok test_bad_fastq_2 (test.test_spades_func.TestSPAdesFunc.test_bad_fastq_2) ... ok test_build_spades_command_1 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_1) ... ok test_build_spades_command_2 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_2) ... ok test_build_spades_command_3 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_3) ... ok test_build_spades_command_4 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_4) ... ok test_build_spades_command_5 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_5) ... ok test_build_spades_command_6 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_6) ... ok test_build_spades_command_7 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_7) ... ok test_get_read_count_1 (test.test_spades_func.TestSPAdesFunc.test_get_read_count_1) ... ok test_get_read_count_2 (test.test_spades_func.TestSPAdesFunc.test_get_read_count_2) ... ok test_get_read_lengths_1 (test.test_spades_func.TestSPAdesFunc.test_get_read_lengths_1) ... ok test_get_read_lengths_2 (test.test_spades_func.TestSPAdesFunc.test_get_read_lengths_2) ... ok ---------------------------------------------------------------------- Ran 229 tests in 36.321s OK I: pybuild pybuild:334: rm /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler-runner.py; rm -r /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/sample_data; rm -r /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/__pycache__ I: pybuild pybuild:308: cp -a unicycler-runner.py /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build; cp -a unicycler/cpp_functions.so /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler; cp -a sample_data /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build I: pybuild base:311: cd /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build; python3.13 -m unittest discover -v test_attributes (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_attributes) ... ok test_dead_end_count (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_dead_end_count) ... ok test_filter_by_read_depth (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_filter_by_read_depth) ... ok test_forward_links (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_forward_links) ... ok test_get_all_gfa_link_lines (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_all_gfa_link_lines) ... ok test_get_estimated_sequence_len (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_estimated_sequence_len) ... ok test_get_median_read_depth (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_median_read_depth) ... ok test_get_n_segment_length (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_n_segment_length) ... ok test_get_total_length (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_total_length) ... ok test_get_total_length_no_overlaps (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_get_total_length_no_overlaps) ... ok test_links_match (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_links_match) Tests that each segment's forward links match up with its reverse complement's reverse ... ok test_load_paths (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_load_paths) ... ok test_normalise_read_depths (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_normalise_read_depths) ... ok test_remove_all_overlaps (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_remove_all_overlaps) ... ok test_remove_segments (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_remove_segments) ... ok test_remove_small_components (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_remove_small_components) ... ok test_reverse_links (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_reverse_links) ... ok test_save_specific_segments_to_fasta (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_save_specific_segments_to_fasta) ... ok test_save_to_fasta (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_save_to_fasta) ... ok test_save_to_fasta_length (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_save_to_fasta_length) ... ok test_save_to_gfa (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_save_to_gfa) This test saves the graph to GFA, loads the GFA graph and then compares the two graphs to ... ok test_segments (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_segments) ... ok test_sequence (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_sequence) ... ok test_total_dead_end_count (test.test_assembly_graph.TestAssemblyGraphFunctions1.test_total_dead_end_count) ... ok test_add_link_1 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_add_link_1) ... ok test_add_link_2 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_add_link_2) ... ok test_all_segments_below_depth (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_all_segments_below_depth) ... ok test_attributes (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_attributes) ... ok test_bad_overlaps (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_bad_overlaps) ... ok test_dead_end_change_if_deleted (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_dead_end_change_if_deleted) ... ok test_dead_end_change_if_path_deleted (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_dead_end_change_if_path_deleted) ... ok test_dead_end_count (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_dead_end_count) ... ok test_filter_homopolymer_loops (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_filter_homopolymer_loops) ... ok test_forward_links (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_forward_links) ... ok test_get_connected_components_and_remove_link (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_connected_components_and_remove_link) ... ok test_get_connected_segments (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_connected_segments) ... ok test_get_exclusive_inputs (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_exclusive_inputs) ... ok test_get_exclusive_outputs (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_exclusive_outputs) ... ok test_get_mean_path_depth (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_mean_path_depth) ... ok test_get_median_read_depth (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_median_read_depth) ... ok test_get_next_available_seg_number (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_next_available_seg_number) ... ok test_get_path_sequence (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_path_sequence) ... ok test_get_simple_path (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_simple_path) ... ok test_get_total_length (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_total_length) ... ok test_get_total_length_no_overlaps (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_get_total_length_no_overlaps) ... ok test_lead_exclusively_from (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_lead_exclusively_from) ... ok test_lead_exclusively_to (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_lead_exclusively_to) ... ok test_links_match (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_links_match) Tests that each segment's forward links match up with its reverse complement's reverse ... ok test_merge_all_possible (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_merge_all_possible) ... ok test_merge_simple_path_1 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_merge_simple_path_1) ... ok test_merge_simple_path_2 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_merge_simple_path_2) ... ok test_merge_simple_path_3 (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_merge_simple_path_3) ... ok test_normalise_read_depths (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_normalise_read_depths) ... ok test_remove_small_components (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_remove_small_components) ... ok test_remove_small_dead_ends (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_remove_small_dead_ends) ... ok test_reverse_links (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_reverse_links) ... ok test_segments (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_segments) ... ok test_seq_from_signed_seg_num (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_seq_from_signed_seg_num) ... ok test_sequence (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_sequence) ... ok test_total_dead_end_count (test.test_assembly_graph.TestAssemblyGraphFunctions2.test_total_dead_end_count) ... ok test_expand_repeats_1 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_1) Tests that the common sequence in segments 3 and 4 (just a C) is moved onto segment 2. ... ok test_expand_repeats_2 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_2) Tests that the common sequence in segments 7 and 8 (GATTAGCG) is moved onto segment 6. ... ok test_expand_repeats_3 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_3) Tests that the common sequence on both strands of segment 1 is moved onto segment 2. ... ok test_expand_repeats_4 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_4) Tests that segment 5 isn't changed, because moving its common sequence (from each strand) ... ok test_expand_repeats_5 (test.test_assembly_graph.TestExpandRepeats.test_expand_repeats_5) Tests that paths through the graph are unchanged by the repeat expansion. ... ok test_graph (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_graph) ... ok test_remove_zero_length_segs_1 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_1) Tests that segment 9638 has been removed. ... ok test_remove_zero_length_segs_10 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_10) Tests that segments 9125 and 9126 have been removed (results in a 3-way split). ... ok test_remove_zero_length_segs_11 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_11) Tests that segments 8854 and 8855 have been removed (in a simple path). ... ok test_remove_zero_length_segs_2 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_2) Tests that segment 5849 has been removed. ... ok test_remove_zero_length_segs_3 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_3) Tests that segment 6513 has not been removed (it's a junction point). ... ok test_remove_zero_length_segs_4 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_4) Tests that both segments 8851 and 8852 have been removed. ... ok test_remove_zero_length_segs_5 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_5) Tests that segment 4907 has not been removed (it's a junction point and a dead end). ... ok test_remove_zero_length_segs_6 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_6) Tests that segment 10029 has been removed (it's a dead end but not a junction). ... ok test_remove_zero_length_segs_7 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_7) Tests that segment 9822 has been removed (it's on a simple path). ... ok test_remove_zero_length_segs_8 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_8) Tests that segment 1 has been removed (it's isolated and unconnected). ... ok test_remove_zero_length_segs_9 (test.test_assembly_graph.TestRemoveZeroLengthSegments.test_remove_zero_length_segs_9) Tests that segment 8232 has been removed. ... ok test_graph (test.test_assembly_graph.TestRepairMultiwayJunction.test_graph) ... ok test_repair_multi_way_junctions_1 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_1) ... ok test_repair_multi_way_junctions_2 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_2) ... ok test_repair_multi_way_junctions_3 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_3) ... ok test_repair_multi_way_junctions_4 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_4) ... ok test_repair_multi_way_junctions_5 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_5) ... ok test_repair_multi_way_junctions_6 (test.test_assembly_graph.TestRepairMultiwayJunction.test_repair_multi_way_junctions_6) ... ok test_merge_1 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_merge_1) Tests a particular part of the graph with merging and splitting. ... ok test_merge_split_1 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_merge_split_1) Tests a particular part of the graph with merging and splitting. ... ok test_merge_split_2 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_merge_split_2) Tests a particular part of the graph with merging and splitting. ... ok test_single_copy_segments_1 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_single_copy_segments_1) Tests large contigs from the largest replicon, all of which should have a copy depth of 1. ... ok test_single_copy_segments_2 (test.test_assembly_graph_copy_depth.TestCopyDepth.test_single_copy_segments_2) Tests single copy contigs from a smaller, higher depth replicon. They should have a copy ... ok test_random_seq_no_start_gene (test.test_blast_func.TestBlastFunc.test_random_seq_no_start_gene) ... ok test_random_seq_with_exact_gene_forward_strand (test.test_blast_func.TestBlastFunc.test_random_seq_with_exact_gene_forward_strand) ... ok test_random_seq_with_exact_gene_reverse_strand (test.test_blast_func.TestBlastFunc.test_random_seq_with_exact_gene_reverse_strand) ... ok test_1bp_deletion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_1bp_deletion) ... ok test_1bp_insertion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_1bp_insertion) ... ok test_2bp_deletion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_2bp_deletion) ... ok test_2bp_insertion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_2bp_insertion) ... ok test_2bp_insertion_and_2bp_deletion (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_2bp_insertion_and_2bp_deletion) ... ok test_long_perfect_alignment (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_long_perfect_alignment) ... ok test_one_mismatch (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_one_mismatch) ... ok test_perfect_alignment (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_perfect_alignment) ... ok test_random_seqs (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_random_seqs) This test aligns two random sequences of different length, making sure that the scores are ... ok test_shift_big_band (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_shift_big_band) This test has a 20 bp insertion near the start and a 20 bp deletion near the end, shifting ... ok test_shift_small_band (test.test_cpp_wrappers.TestFullyGlobalAlignment.test_shift_small_band) This test uses the same sequences as the previous test, but uses a smaller bandwidth than ... ok test_consensus_different_qualities (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_different_qualities) ... ok test_consensus_with_all (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_all) ... ok test_consensus_with_deletions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_deletions) ... ok test_consensus_with_deletions_and_insertions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_deletions_and_insertions) ... ok test_consensus_with_insertions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_insertions) ... ok test_consensus_with_subs (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_consensus_with_subs) ... ok test_start_end_deletions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_start_end_deletions) ... ok test_start_end_insertions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_start_end_insertions) ... ok test_start_end_insertions_and_deletions (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_start_end_insertions_and_deletions) ... ok test_two_way_consensus (test.test_cpp_wrappers.TestMultipleSequenceAlignment.test_two_way_consensus) ... ok test_makeblastdb_not_found (test.test_dependencies.TestDependencies.test_makeblastdb_not_found) ... ok test_no_rotate (test.test_dependencies.TestDependencies.test_no_rotate) ... ok test_spades_not_found (test.test_dependencies.TestDependencies.test_spades_not_found) ... ok test_tblastn_not_found (test.test_dependencies.TestDependencies.test_tblastn_not_found) ... ok test_verbosity_1 (test.test_dependencies.TestDependencies.test_verbosity_1) ... ok test_verbosity_2 (test.test_dependencies.TestDependencies.test_verbosity_2) ... ok test_basic_options (test.test_help_text.TestBasicHelpText.test_basic_options) ... ok test_extended_options (test.test_help_text.TestBasicHelpText.test_extended_options) ... ok test_output (test.test_help_text.TestBasicHelpText.test_output) ... ok test_return_code (test.test_help_text.TestBasicHelpText.test_return_code) ... ok test_title (test.test_help_text.TestBasicHelpText.test_title) ... ok test_error_message (test.test_help_text.TestEmptyCommand.test_error_message) ... ok test_output (test.test_help_text.TestEmptyCommand.test_output) ... ok test_return_code (test.test_help_text.TestEmptyCommand.test_return_code) ... ok test_basic_options (test.test_help_text.TestExtendedHelpText.test_basic_options) ... ok test_extended_options (test.test_help_text.TestExtendedHelpText.test_extended_options) ... ok test_output (test.test_help_text.TestExtendedHelpText.test_output) ... ok test_return_code (test.test_help_text.TestExtendedHelpText.test_return_code) ... ok test_title (test.test_help_text.TestExtendedHelpText.test_title) ... ok test_contig_placement_1 (test.test_miniasm_assembly.TestContigPlacement.test_contig_placement_1) This covers the case where the contig sequences are in the middle of the unitig sequences. ... ok test_contig_placement_2 (test.test_miniasm_assembly.TestContigPlacement.test_contig_placement_2) This covers the case where a contig sequence spans the circular junction of the unitig ... ok test_contig_placement_3 (test.test_miniasm_assembly.TestContigPlacement.test_contig_placement_3) This covers the case where the a contig sequence starts right at the beginning of the ... ok test_contig_placement_4 (test.test_miniasm_assembly.TestContigPlacement.test_contig_placement_4) This covers the case where the a contig sequence ends right at the end of the unitig ... ok test_add_line_breaks_to_sequence (test.test_misc.TestMiscFunctions.test_add_line_breaks_to_sequence) ... ok test_colour (test.test_misc.TestMiscFunctions.test_colour) ... ok test_flip_number_order (test.test_misc.TestMiscFunctions.test_flip_number_order) ... ok test_float_to_str (test.test_misc.TestMiscFunctions.test_float_to_str) ... ok test_get_compression_type (test.test_misc.TestMiscFunctions.test_get_compression_type) ... ok test_get_nice_header (test.test_misc.TestMiscFunctions.test_get_nice_header) ... ok test_get_num_agreement (test.test_misc.TestMiscFunctions.test_get_num_agreement) ... ok test_get_percentile (test.test_misc.TestMiscFunctions.test_get_percentile) ... ok test_get_random_base (test.test_misc.TestMiscFunctions.test_get_random_base) ... ok test_get_random_sequence (test.test_misc.TestMiscFunctions.test_get_random_sequence) ... ok test_get_sequence_file_type (test.test_misc.TestMiscFunctions.test_get_sequence_file_type) ... ok test_int_to_str (test.test_misc.TestMiscFunctions.test_int_to_str) ... ok test_is_header_spades_format (test.test_misc.TestMiscFunctions.test_is_header_spades_format) ... ok test_len_without_format (test.test_misc.TestMiscFunctions.test_len_without_format) ... ok test_load_fasta (test.test_misc.TestMiscFunctions.test_load_fasta) ... ok test_load_fasta_with_full_header (test.test_misc.TestMiscFunctions.test_load_fasta_with_full_header) ... ok test_remove_formatting (test.test_misc.TestMiscFunctions.test_remove_formatting) ... ok test_reverse_complement (test.test_misc.TestMiscFunctions.test_reverse_complement) ... ok test_round_to_nearest_odd (test.test_misc.TestMiscFunctions.test_round_to_nearest_odd) ... ok test_score_function (test.test_misc.TestMiscFunctions.test_score_function) ... ok test_spades_version_parsing_1 (test.test_misc.TestMiscFunctions.test_spades_version_parsing_1) ... ok test_spades_version_parsing_2 (test.test_misc.TestMiscFunctions.test_spades_version_parsing_2) ... ok test_spades_version_parsing_3 (test.test_misc.TestMiscFunctions.test_spades_version_parsing_3) ... ok test_spades_version_parsing_4 (test.test_misc.TestMiscFunctions.test_spades_version_parsing_4) ... ok test_spades_version_status_1 (test.test_misc.TestMiscFunctions.test_spades_version_status_1) ... ok test_spades_version_status_10 (test.test_misc.TestMiscFunctions.test_spades_version_status_10) ... ok test_spades_version_status_11 (test.test_misc.TestMiscFunctions.test_spades_version_status_11) ... ok test_spades_version_status_12 (test.test_misc.TestMiscFunctions.test_spades_version_status_12) ... ok test_spades_version_status_13 (test.test_misc.TestMiscFunctions.test_spades_version_status_13) ... ok test_spades_version_status_14 (test.test_misc.TestMiscFunctions.test_spades_version_status_14) ... ok test_spades_version_status_2 (test.test_misc.TestMiscFunctions.test_spades_version_status_2) ... ok test_spades_version_status_3 (test.test_misc.TestMiscFunctions.test_spades_version_status_3) ... ok test_spades_version_status_4 (test.test_misc.TestMiscFunctions.test_spades_version_status_4) ... ok test_spades_version_status_5 (test.test_misc.TestMiscFunctions.test_spades_version_status_5) ... ok test_spades_version_status_6 (test.test_misc.TestMiscFunctions.test_spades_version_status_6) ... ok test_spades_version_status_7 (test.test_misc.TestMiscFunctions.test_spades_version_status_7) ... ok test_spades_version_status_8 (test.test_misc.TestMiscFunctions.test_spades_version_status_8) ... ok test_spades_version_status_9 (test.test_misc.TestMiscFunctions.test_spades_version_status_9) ... ok test_strip_read_extensions_capitals (test.test_misc.TestMiscFunctions.test_strip_read_extensions_capitals) ... ok test_strip_read_extensions_fa (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fa) ... ok test_strip_read_extensions_fasta (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fasta) ... ok test_strip_read_extensions_fastq (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fastq) ... ok test_strip_read_extensions_fastq_extra_dots (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fastq_extra_dots) ... ok test_strip_read_extensions_fna (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fna) ... ok test_strip_read_extensions_fq (test.test_misc.TestMiscFunctions.test_strip_read_extensions_fq) ... ok test_strip_read_extensions_other_fasta (test.test_misc.TestMiscFunctions.test_strip_read_extensions_other_fasta) ... ok test_weighted_average (test.test_misc.TestMiscFunctions.test_weighted_average) ... ok test_weighted_average_list (test.test_misc.TestMiscFunctions.test_weighted_average_list) ... ok test_absolute_paths (test.test_options.TestUnicyclerOptions.test_absolute_paths) ... ok test_defaults (test.test_options.TestUnicyclerOptions.test_defaults) ... ok test_modes (test.test_options.TestUnicyclerOptions.test_modes) ... ok test_relative_paths (test.test_options.TestUnicyclerOptions.test_relative_paths) ... ok test_long_contained_read (test.test_semi_global_alignment.TestContainedReadAlignments.test_long_contained_read) ... ok test_medium_contained_read (test.test_semi_global_alignment.TestContainedReadAlignments.test_medium_contained_read) ... ok test_short_contained_read (test.test_semi_global_alignment.TestContainedReadAlignments.test_short_contained_read) ... ok test_end_to_end (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_end_to_end) ... ok test_read_contained_1 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_contained_1) ... ok test_read_contained_2 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_contained_2) ... ok test_read_contained_3 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_contained_3) ... ok test_read_end_overlap (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_end_overlap) ... ok test_read_start_overlap (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_read_start_overlap) ... ok test_ref_contained_1 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_ref_contained_1) ... ok test_ref_contained_2 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_ref_contained_2) ... ok test_ref_contained_3 (test.test_semi_global_alignment.TestPerfectMatchAlignments.test_ref_contained_3) ... ok test_tough_alignment_0 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_0) The beginning of the reference in this case is repetitive, which was able to throw off ... ok test_tough_alignment_1 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_1) This read goes through a repetitive area, which means that the densest area of common ... ok test_tough_alignment_10 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_10) This is a very low quality read. ... ok test_tough_alignment_11 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_11) Repeats at one end of the read. ... ok test_tough_alignment_12 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_12) Repeats at one end of the read. ... ok test_tough_alignment_13 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_13) This read caused a crash before I added the getMaxSeedChainGapArea function in ... ok test_tough_alignment_14 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_14) This read caused a crash before I added made a few fixes to the line tracing code. It won't ... ok test_tough_alignment_15 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_15) This read should hit the same reference twice, even at low sensitivities. ... ok test_tough_alignment_2 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_2) This read goes through a repetitive area, which means that the densest area of common ... ok test_tough_alignment_3 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_3) The first line tracing of this alignment is bad but uses all the points. This previously ... ok test_tough_alignment_4 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_4) Like so many of these tough ones, this case has a read which enters a repetitive region ... ok test_tough_alignment_5 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_5) ... ok test_tough_alignment_6 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_6) This one misses the right alignment on lower sensitivities because the line tracing never ... ok test_tough_alignment_7 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_7) This one misses the right alignment on lower sensitivities because the line tracing never ... ok test_tough_alignment_8 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_8) This has a weird change in slope - the read has a good part and a bad part. Ideally the ... ok test_tough_alignment_9 (test.test_semi_global_alignment.TestToughAlignments.test_tough_alignment_9) This is a very low quality read. ... ok test_bad_fastq_1 (test.test_spades_func.TestSPAdesFunc.test_bad_fastq_1) ... ok test_bad_fastq_2 (test.test_spades_func.TestSPAdesFunc.test_bad_fastq_2) ... ok test_build_spades_command_1 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_1) ... ok test_build_spades_command_2 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_2) ... ok test_build_spades_command_3 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_3) ... ok test_build_spades_command_4 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_4) ... ok test_build_spades_command_5 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_5) ... ok test_build_spades_command_6 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_6) ... ok test_build_spades_command_7 (test.test_spades_func.TestSPAdesFunc.test_build_spades_command_7) ... ok test_get_read_count_1 (test.test_spades_func.TestSPAdesFunc.test_get_read_count_1) ... ok test_get_read_count_2 (test.test_spades_func.TestSPAdesFunc.test_get_read_count_2) ... ok test_get_read_lengths_1 (test.test_spades_func.TestSPAdesFunc.test_get_read_lengths_1) ... ok test_get_read_lengths_2 (test.test_spades_func.TestSPAdesFunc.test_get_read_lengths_2) ... ok ---------------------------------------------------------------------- Ran 229 tests in 33.563s OK I: pybuild pybuild:334: rm /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler-runner.py; rm -r /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/sample_data; rm -r /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/__pycache__ create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/unicycler-0.5.1+dfsg' dh_auto_install --destdir=debian/unicycler I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler running install /build/reproducible-path/unicycler-0.5.1+dfsg/setup.py:86: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! install.initialize_options(self) running build running build_py running install_lib creating /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages creating /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/path_finding.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/blast_func.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/assembly_graph_copy_depth.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/assembly_graph.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/unicycler_align.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/bridge_long_read.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/log.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/version.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/__init__.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/spades_func.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/cpp_functions.so -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/bridge_common.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/assembly_graph_segment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/read_ref.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/settings.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/bridge_long_read_simple.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/bridge_spades_contig.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/minimap_alignment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/bridge_miniasm.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/miniasm_assembly.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/cpp_wrappers.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/misc.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/string_graph.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/bridge_loop_unroll.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/unicycler.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.12_unicycler/build/unicycler/alignment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/path_finding.py to path_finding.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/blast_func.py to blast_func.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/assembly_graph_copy_depth.py to assembly_graph_copy_depth.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/assembly_graph.py to assembly_graph.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/unicycler_align.py to unicycler_align.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/bridge_long_read.py to bridge_long_read.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/log.py to log.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/spades_func.py to spades_func.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/bridge_common.py to bridge_common.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/assembly_graph_segment.py to assembly_graph_segment.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/read_ref.py to read_ref.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/settings.py to settings.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/bridge_long_read_simple.py to bridge_long_read_simple.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/bridge_spades_contig.py to bridge_spades_contig.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/minimap_alignment.py to minimap_alignment.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/bridge_miniasm.py to bridge_miniasm.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/miniasm_assembly.py to miniasm_assembly.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/cpp_wrappers.py to cpp_wrappers.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/misc.py to misc.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/string_graph.py to string_graph.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/bridge_loop_unroll.py to bridge_loop_unroll.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/unicycler.py to unicycler.cpython-312.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler/alignment.py to alignment.cpython-312.pyc running install_egg_info running egg_info creating unicycler.egg-info writing unicycler.egg-info/PKG-INFO writing dependency_links to unicycler.egg-info/dependency_links.txt writing entry points to unicycler.egg-info/entry_points.txt writing top-level names to unicycler.egg-info/top_level.txt writing manifest file 'unicycler.egg-info/SOURCES.txt' reading manifest file 'unicycler.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'unicycler.egg-info/SOURCES.txt' Copying unicycler.egg-info to /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.12/dist-packages/unicycler-0.5.1.egg-info Skipping SOURCES.txt running install_scripts Installing unicycler script to /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/bin  __  \ \___  \ ___\  //  ____// _ _ _ _  //_ //\\ | | | | |_| | | // \// \\ | | | | _ __ _ ___ _ _ ___ | | ___ _ __ || (O) || | | | || '_ \ | | / __|| | | | / __|| | / _ \| '__| \\ \_ // | |__| || | | || || (__ | |_| || (__ | || __/| |  \\_____// \____/ |_| |_||_| \___| \__, | \___||_| \___||_|  __/ |  |___/ Unicycler is installed! Example commands: unicycler --help unicycler --help_all unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -o path/to/output_dir unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -l long_reads.fastq.gz -o path/to/output_dir All tools required by Unicycler were found. I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler running install /build/reproducible-path/unicycler-0.5.1+dfsg/setup.py:86: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! install.initialize_options(self) running build running build_py running install_lib creating /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages creating /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/path_finding.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/blast_func.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/assembly_graph_copy_depth.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/assembly_graph.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/unicycler_align.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/bridge_long_read.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/log.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/version.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/__init__.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/spades_func.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/cpp_functions.so -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/bridge_common.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/assembly_graph_segment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/read_ref.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/settings.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/bridge_long_read_simple.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/bridge_spades_contig.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/minimap_alignment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/bridge_miniasm.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/miniasm_assembly.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/cpp_wrappers.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/misc.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/string_graph.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/bridge_loop_unroll.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/unicycler.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler copying /build/reproducible-path/unicycler-0.5.1+dfsg/.pybuild/cpython3_3.13_unicycler/build/unicycler/alignment.py -> /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/path_finding.py to path_finding.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/blast_func.py to blast_func.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/assembly_graph_copy_depth.py to assembly_graph_copy_depth.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/assembly_graph.py to assembly_graph.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/unicycler_align.py to unicycler_align.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/bridge_long_read.py to bridge_long_read.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/log.py to log.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/spades_func.py to spades_func.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/bridge_common.py to bridge_common.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/assembly_graph_segment.py to assembly_graph_segment.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/read_ref.py to read_ref.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/settings.py to settings.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/bridge_long_read_simple.py to bridge_long_read_simple.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/bridge_spades_contig.py to bridge_spades_contig.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/minimap_alignment.py to minimap_alignment.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/bridge_miniasm.py to bridge_miniasm.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/miniasm_assembly.py to miniasm_assembly.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/cpp_wrappers.py to cpp_wrappers.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/misc.py to misc.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/string_graph.py to string_graph.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/bridge_loop_unroll.py to bridge_loop_unroll.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/unicycler.py to unicycler.cpython-313.pyc byte-compiling /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler/alignment.py to alignment.cpython-313.pyc running install_egg_info running egg_info writing unicycler.egg-info/PKG-INFO writing dependency_links to unicycler.egg-info/dependency_links.txt writing entry points to unicycler.egg-info/entry_points.txt writing top-level names to unicycler.egg-info/top_level.txt reading manifest file 'unicycler.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'unicycler.egg-info/SOURCES.txt' Copying unicycler.egg-info to /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/lib/python3.13/dist-packages/unicycler-0.5.1.egg-info Skipping SOURCES.txt running install_scripts Installing unicycler script to /build/reproducible-path/unicycler-0.5.1+dfsg/debian/unicycler/usr/bin  __  \ \___  \ ___\  //  ____// _ _ _ _  //_ //\\ | | | | |_| | | // \// \\ | | | | _ __ _ ___ _ _ ___ | | ___ _ __ || (O) || | | | || '_ \ | | / __|| | | | / __|| | / _ \| '__| \\ \_ // | |__| || | | || || (__ | |_| || (__ | || __/| |  \\_____// \____/ |_| |_||_| \___| \__, | \___||_| \___||_|  __/ |  |___/ Unicycler is installed! Example commands: unicycler --help unicycler --help_all unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -o path/to/output_dir unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -l long_reads.fastq.gz -o path/to/output_dir All tools required by Unicycler were found. make[1]: Leaving directory '/build/reproducible-path/unicycler-0.5.1+dfsg' dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/unicycler-0.5.1+dfsg' dh_python3 --no-ext-rename make[1]: Leaving directory '/build/reproducible-path/unicycler-0.5.1+dfsg' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'unicycler' in '../unicycler_0.5.1+dfsg-3_amd64.deb'. dpkg-deb: building package 'unicycler-dbgsym' in '../unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=any -O../unicycler_0.5.1+dfsg-3_amd64.buildinfo dpkg-genchanges --build=any -O../unicycler_0.5.1+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-07-28T09:10:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 28 Jul 2025 09:10:31 +0000 | +------------------------------------------------------------------------------+ unicycler_0.5.1+dfsg-3_amd64.changes: ------------------------------------- Format: 1.8 Date: Wed, 05 Feb 2025 21:27:11 +0100 Source: unicycler Binary: unicycler unicycler-dbgsym Architecture: amd64 Version: 0.5.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: unicycler - hybrid assembly pipeline for bacterial genomes Changes: unicycler (0.5.1+dfsg-3) unstable; urgency=medium . * Team upload. * Remove python3-setuptools from runtime deps . [ Étienne Mollier ] * leftover-syntax-warnings.patch: declare forwarding upstream. Checksums-Sha1: 46668b90f5a37f87de6bdaa2b76a92870f608bc9 7204420 unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb 51a9ce4f74d203ee9ac1f5facdff1669299bd49f 13066 unicycler_0.5.1+dfsg-3_amd64.buildinfo 79c68cb15129b8a2ac1b6a4fb70e4e12b3142a1e 897956 unicycler_0.5.1+dfsg-3_amd64.deb Checksums-Sha256: f42dc956e8e60a293bc7f7e23240d94428b0361c5c09653eb450e5f7911175c0 7204420 unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb bb4b1529124be4b7bb74c7595ed0bc36f53cafa4d96b126b23a0b79861941d1b 13066 unicycler_0.5.1+dfsg-3_amd64.buildinfo 3cbcf1805de98d3d1b0e26ce5e46eefa39ffbd1412740ded731b0771124614d7 897956 unicycler_0.5.1+dfsg-3_amd64.deb Files: d4173a5c6f9ee08a89048719685b028d 7204420 debug optional unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb c9a23bab933baeb2730c1ce96ca12ba9 13066 science optional unicycler_0.5.1+dfsg-3_amd64.buildinfo f8b3e7c1be0772a7b6b4c572663bbdc7 897956 science optional unicycler_0.5.1+dfsg-3_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Mon, 28 Jul 2025 09:10:32 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: unicycler Binary: unicycler unicycler-dbgsym Architecture: amd64 Version: 0.5.1+dfsg-3 Checksums-Md5: d4173a5c6f9ee08a89048719685b028d 7204420 unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb f8b3e7c1be0772a7b6b4c572663bbdc7 897956 unicycler_0.5.1+dfsg-3_amd64.deb Checksums-Sha1: 46668b90f5a37f87de6bdaa2b76a92870f608bc9 7204420 unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb 79c68cb15129b8a2ac1b6a4fb70e4e12b3142a1e 897956 unicycler_0.5.1+dfsg-3_amd64.deb Checksums-Sha256: f42dc956e8e60a293bc7f7e23240d94428b0361c5c09653eb450e5f7911175c0 7204420 unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb 3cbcf1805de98d3d1b0e26ce5e46eefa39ffbd1412740ded731b0771124614d7 897956 unicycler_0.5.1+dfsg-3_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 28 Jul 2025 09:10:30 +0000 Build-Path: /build/reproducible-path/unicycler-0.5.1+dfsg Installed-Build-Depends: adduser (= 3.137), adwaita-icon-theme (= 48~beta-1), at-spi2-common (= 2.55.2-1), autoconf (= 2.72-3), automake (= 1:1.17-3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), bamtools (= 2.5.2+dfsg-6+b1), base-files (= 13.6), base-passwd (= 3.6.6), bash (= 5.2.37-1), bcftools (= 1.20-2), binutils (= 2.43.90.20250202-1), binutils-common (= 2.43.90.20250202-1), binutils-x86-64-linux-gnu (= 2.43.90.20250202-1), bowtie2 (= 2.5.4-1+b1), bsdextrautils (= 2.40.4-3), bsdutils (= 1:2.40.4-3), build-essential (= 12.12), bwa (= 0.7.18-1), bzip2 (= 1.0.8-6), ca-certificates (= 20241223), ca-certificates-java (= 20240118), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-16), cpp-14-x86-64-linux-gnu (= 14.2.0-16), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-11), dbus (= 1.16.0-1), dbus-bin (= 1.16.0-1), dbus-daemon (= 1.16.0-1), dbus-session-bus-common (= 1.16.0-1), dbus-system-bus-common (= 1.16.0-1), dbus-user-session (= 1.16.0-1), dconf-gsettings-backend (= 0.40.0-5), dconf-service (= 0.40.0-5), debconf (= 1.5.89), debhelper (= 13.24.1), debianutils (= 5.21), default-jdk (= 2:1.21-76), default-jdk-headless (= 2:1.21-76), default-jre (= 2:1.21-76), default-jre-headless (= 2:1.21-76), dh-autoreconf (= 20), dh-python (= 6.20250108), dh-strip-nondeterminism (= 1.14.1-1), diffutils (= 1:3.10-2), dpkg (= 1.22.14), dpkg-dev (= 1.22.14), dwz (= 0.15-1+b1), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), fontconfig (= 2.15.0-2), fontconfig-config (= 2.15.0-2), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-16), g++-14-x86-64-linux-gnu (= 14.2.0-16), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-16), gcc-14-base (= 14.2.0-16), gcc-14-x86-64-linux-gnu (= 14.2.0-16), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4), groff-base (= 1.23.0-7), gtk-update-icon-cache (= 4.16.12+ds-3), gzip (= 1.13-1), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), java-common (= 0.76), java-wrappers (= 0.5), junit4 (= 4.13.2-5), libacl1 (= 2.3.2-2+b1), libapache-pom-java (= 33-2), libapparmor1 (= 3.1.7-1+b3), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-16), libasound2-data (= 1.2.13-1), libasound2t64 (= 1.2.13-1+b1), libatk-bridge2.0-0t64 (= 2.55.2-1), libatk1.0-0t64 (= 2.55.2-1), libatomic1 (= 14.2.0-16), libatspi2.0-0t64 (= 2.55.2-1), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b1), libavahi-client3 (= 0.8-16), libavahi-common-data (= 0.8-16), libavahi-common3 (= 0.8-16), libbamtools2.5.2 (= 2.5.2+dfsg-6+b1), libbinutils (= 2.43.90.20250202-1), libblkid1 (= 2.40.4-3), libbrotli1 (= 1.1.0-2+b6), libbsd0 (= 0.12.2-2), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-6), libc-dev-bin (= 2.40-6), libc6 (= 2.40-6), libc6-dev (= 2.40-6), libcairo-gobject2 (= 1.18.2-2), libcairo2 (= 1.18.2-2), libcap-ng0 (= 0.8.5-4), libcap2 (= 1:2.66-5+b1), libcc1-0 (= 14.2.0-16), libcloudproviders0 (= 0.3.6-1+b1), libcolord2 (= 1.4.7-1+b2), libcom-err2 (= 1.47.2-1), libcommons-beanutils-java (= 1.9.4-2), libcommons-codec-java (= 1.17.1-1), libcommons-collections3-java (= 3.2.2-3), libcommons-collections4-java (= 4.4-2), libcommons-compress-java (= 1.27.1-2), libcommons-io-java (= 2.18.0-1), libcommons-jexl2-java (= 2.1.1-6), libcommons-lang-java (= 2.6-10), libcommons-lang3-java (= 3.17.0-1), libcommons-logging-java (= 1.3.0-1), libcommons-parent-java (= 56-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.43.90.20250202-1), libctf0 (= 2.43.90.20250202-1), libcups2t64 (= 2.4.10-2+b1), libcurl3t64-gnutls (= 8.11.1-1+b1), libdatrie1 (= 0.2.13-3+b1), libdb5.3t64 (= 5.3.28+dfsg2-9), libdbus-1-3 (= 1.16.0-1), libdconf1 (= 0.40.0-5), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdeflate0 (= 1.23-1+b1), libdpkg-perl (= 1.22.14), libdrm-amdgpu1 (= 2.4.123-1), libdrm-common (= 2.4.123-1), libdrm-intel1 (= 2.4.123-1), libdrm-radeon1 (= 2.4.123-1), libdrm2 (= 2.4.123-1), libedit2 (= 3.1-20250104-1), libedlib1 (= 1.2.7-6+b2), libelf1t64 (= 0.192-4), libepoxy0 (= 1.5.10-2), libexpat1 (= 2.6.4-1), libezmorph-java (= 1.0.6-4), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.1-1), libfontconfig1 (= 2.15.0-2), libfreetype6 (= 2.13.3+dfsg-1), libfribidi0 (= 1.0.16-1), libgbm1 (= 24.3.4-3), libgcc-14-dev (= 14.2.0-16), libgcc-s1 (= 14.2.0-16), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgdk-pixbuf-2.0-0 (= 2.42.12+dfsg-2), libgdk-pixbuf2.0-common (= 2.42.12+dfsg-2), libgif7 (= 5.2.2-1+b1), libgl1 (= 1.7.0-1+b2), libgl1-mesa-dri (= 24.3.4-3), libglapi-mesa (= 24.3.4-3), libglib2.0-0t64 (= 2.83.3-2), libglvnd0 (= 1.7.0-1+b2), libglx-mesa0 (= 24.3.4-3), libglx0 (= 1.7.0-1+b2), libgmp10 (= 2:6.3.0+dfsg-3), libgnutls30t64 (= 3.8.8-2), libgomp1 (= 14.2.0-16), libgprofng0 (= 2.43.90.20250202-1), libgraphite2-3 (= 1.3.14-2+b1), libgssapi-krb5-2 (= 1.21.3-4), libgtk-3-0t64 (= 3.24.48-4), libgtk-3-common (= 3.24.48-4), libhamcrest-java (= 2.2-2), libharfbuzz0b (= 10.2.0-1), libhogweed6t64 (= 3.10-1+b1), libhts3t64 (= 1.20+ds-2), libhtscodecs2 (= 1.6.1-1), libhtsjdk-java (= 4.1.3+dfsg-2), libhwasan0 (= 14.2.0-16), libicu72 (= 72.1-6), libidn2-0 (= 2.3.7-2+b1), libisl23 (= 0.27-1), libitm1 (= 14.2.0-16), libjansson4 (= 2.14-2+b3), libjaxen-java (= 1.1.6-5), libjbig0 (= 2.1-6.1+b2), libjpeg62-turbo (= 1:2.1.5-3+b1), libjson-java (= 3.1.0+dfsg-2), libjsoncpp26 (= 1.9.6-3), libk5crypto3 (= 1.21.3-4), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-4), libkrb5support0 (= 1.21.3-4), liblcms2-2 (= 2.16-2), libldap2 (= 2.6.9+dfsg-1), liblerc4 (= 4.0.0+ds-5), libllvm19 (= 1:19.1.7-1+b1), liblmdb0 (= 0.9.31-1+b2), liblsan0 (= 14.2.0-16), liblzma5 (= 5.6.3-1+b1), libmagic-mgc (= 1:5.45-3+b1), libmagic1t64 (= 1:5.45-3+b1), libmbedcrypto16 (= 3.6.2-3), libmbedtls21 (= 3.6.2-3), libmbedx509-7 (= 3.6.2-3), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.4-3), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libncbi-ngs3 (= 3.0.9+dfsg-7+b2), libncbi-vdb3 (= 3.0.9+dfsg-2), libncurses6 (= 6.5+20250125-2), libncursesw6 (= 6.5+20250125-2), libnettle8t64 (= 3.10-1+b1), libnghttp2-14 (= 1.64.0-1), libnghttp3-9 (= 1.6.0-2), libngs-java (= 3.0.9+dfsg-7+b2), libngs-jni (= 3.0.9+dfsg-7+b2), libngtcp2-16 (= 1.9.1-1), libngtcp2-crypto-gnutls8 (= 1.9.1-1), libnlopt0 (= 2.7.1-6+b2), libnsl2 (= 1.3.0-3+b3), libnspr4 (= 2:4.36-1), libnss3 (= 2:3.107-1), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-2), libpam-modules-bin (= 1.7.0-2), libpam-runtime (= 1.7.0-2), libpam-systemd (= 257.2-3), libpam0g (= 1.7.0-2), libpango-1.0-0 (= 1.56.1-1), libpangocairo-1.0-0 (= 1.56.1-1), libpangoft2-1.0-0 (= 1.56.1-1), libpciaccess0 (= 0.17-3+b3), libpcre2-8-0 (= 10.44-5), libpcsclite1 (= 2.3.1-1), libperl5.40 (= 5.40.0-8), libpipeline1 (= 1.5.8-1), libpixman-1-0 (= 0.44.0-3), libpng16-16t64 (= 1.6.46-4), libproc2-0 (= 2:4.0.4-7), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-stdlib (= 3.13.1-2), libpython3.12-minimal (= 3.12.9-1), libpython3.12-stdlib (= 3.12.9-1), libpython3.13-minimal (= 3.13.2-1), libpython3.13-stdlib (= 3.13.2-1), libquadmath0 (= 14.2.0-16), libreadline8t64 (= 8.2-6), librhino-java (= 1.7.15-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-8+b1), libsasl2-modules-db (= 2.1.28+dfsg1-8+b1), libseccomp2 (= 2.5.5-2), libselinux1 (= 3.7-3.1), libsemanage-common (= 3.7-2.1), libsemanage2 (= 3.7-2.1), libsensors-config (= 1:3.6.0-10), libsensors5 (= 1:3.6.0-10+b1), libsepol2 (= 3.7-1), libseqan2-dev (= 2.4.0+dfsg-16), libsframe1 (= 2.43.90.20250202-1), libsharpyuv0 (= 1.5.0-0.1), libslf4j-java (= 1.7.32-1), libsmartcols1 (= 2.40.4-3), libsnappy-java (= 1.1.10.7-1), libsnappy-jni (= 1.1.10.7-1), libsnappy1v5 (= 1.2.1-1+b1), libspoa7.0.0 (= 4.1.4-2+b1), libsqlite3-0 (= 3.46.1-1), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.4.0-2), libssw0 (= 1.1-15+b2), libstdc++-14-dev (= 14.2.0-16), libstdc++6 (= 14.2.0-16), libsystemd-shared (= 257.2-3), libsystemd0 (= 257.2-3), libtasn1-6 (= 4.19.0-3+b3), libthai-data (= 0.1.29-2), libthai0 (= 0.1.29-2+b1), libtiff6 (= 4.5.1+git230720-5), libtinfo6 (= 6.5+20250125-2), libtirpc-common (= 1.3.4+ds-1.3), libtirpc3t64 (= 1.3.4+ds-1.3+b1), libtool (= 2.5.4-3), libtsan2 (= 14.2.0-16), libubsan1 (= 14.2.0-16), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.2-3), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-3), libuv1t64 (= 1.50.0-2), libvulkan1 (= 1.4.304.0-1), libwayland-client0 (= 1.23.1-1), libwayland-cursor0 (= 1.23.1-1), libwayland-egl1 (= 1.23.1-1), libwayland-server0 (= 1.23.1-1), libwebp7 (= 1.5.0-0.1), libx11-6 (= 2:1.8.10-2), libx11-data (= 2:1.8.10-2), libx11-xcb1 (= 2:1.8.10-2), libxau6 (= 1:1.0.11-1), libxcb-dri3-0 (= 1.17.0-2+b1), libxcb-glx0 (= 1.17.0-2+b1), libxcb-present0 (= 1.17.0-2+b1), libxcb-randr0 (= 1.17.0-2+b1), libxcb-render0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb-sync1 (= 1.17.0-2+b1), libxcb-xfixes0 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxcomposite1 (= 1:0.4.6-1), libxcursor1 (= 1:1.2.3-1), libxdamage1 (= 1:1.1.6-1+b2), libxdmcp6 (= 1:1.1.5-1), libxerces2-java (= 2.12.2-1), libxext6 (= 2:1.3.4-1+b3), libxfixes3 (= 1:6.0.0-2+b4), libxi6 (= 2:1.8.2-1), libxinerama1 (= 2:1.1.4-3+b3), libxkbcommon0 (= 1.7.0-2), libxml-commons-external-java (= 1.4.01-6), libxml-commons-resolver1.1-java (= 1.2-11), libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1), libxom-java (= 1.3.9-1), libxrandr2 (= 2:1.5.4-1+b3), libxrender1 (= 1:0.9.10-1.1+b4), libxshmfence1 (= 1.3-1+b3), libxtst6 (= 2:1.2.5-1), libxxf86vm1 (= 1:1.1.4-1+b4), libyaml-0-2 (= 0.2.5-2), libz3-4 (= 4.13.3-1), libzstd1 (= 1.5.6+dfsg-2), linux-libc-dev (= 6.12.11-1), login.defs (= 1:4.16.0-7), m4 (= 1.4.19-5), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), media-types (= 10.1.0), mesa-libgallium (= 24.3.4-3), miniasm (= 0.3+dfsg-4), mount (= 2.40.4-3), ncbi-blast+ (= 2.16.0+ds-6+b1), ncbi-data (= 6.1.20170106+dfsg2-5), ncbi-vdb-data (= 3.0.9+dfsg-2), ncurses-base (= 6.5+20250125-2), ncurses-bin (= 6.5+20250125-2), netbase (= 6.4), openjdk-21-jdk (= 21.0.6+7-1), openjdk-21-jdk-headless (= 21.0.6+7-1), openjdk-21-jre (= 21.0.6+7-1), openjdk-21-jre-headless (= 21.0.6+7-1), openssl (= 3.4.0-2), openssl-provider-legacy (= 3.4.0-2), passwd (= 1:4.16.0-7), patch (= 2.7.6-7), perl (= 5.40.0-8), perl-base (= 5.40.0-8), perl-modules-5.40 (= 5.40.0-8), pilon (= 1.24-3), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-7), python3 (= 3.13.1-2), python3-all (= 3.13.1-2), python3-autocommand (= 2.2.2-3), python3-inflect (= 7.3.1-2), python3-jaraco.context (= 6.0.0-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-joblib (= 1.3.2-6), python3-minimal (= 3.13.1-2), python3-more-itertools (= 10.6.0-1), python3-packaging (= 24.2-1), python3-pkg-resources (= 75.6.0-1), python3-setuptools (= 75.6.0-1), python3-typeguard (= 4.4.1-1), python3-typing-extensions (= 4.12.2-2), python3-yaml (= 6.0.2-1+b1), python3-zipp (= 3.21.0-1), python3.12 (= 3.12.9-1), python3.12-minimal (= 3.12.9-1), python3.13 (= 3.13.2-1), python3.13-minimal (= 3.13.2-1), racon (= 1.5.0-3), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), samtools (= 1.20-3), scala-library (= 2.11.12-5), sed (= 4.9-2), sensible-utils (= 0.0.24), shared-mime-info (= 2.4-5+b2), spades (= 3.15.5+dfsg-8), systemd (= 257.2-3), systemd-sysv (= 257.2-3), sysvinit-utils (= 3.13-1), tar (= 1.35+dfsg-3.1), tzdata (= 2025a-1), unzip (= 6.0-28), util-linux (= 2.40.4-3), x11-common (= 1:7.7+24), xkb-data (= 2.42-1), xz-utils (= 5.6.3-1+b1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1738787231" +------------------------------------------------------------------------------+ | Package contents Mon, 28 Jul 2025 09:10:32 +0000 | +------------------------------------------------------------------------------+ unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb --------------------------------------- new Debian package, version 2.0. size 7204420 bytes: control archive=544 bytes. 389 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: unicycler-dbgsym Source: unicycler Version: 0.5.1+dfsg-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 7283 Depends: unicycler (= 0.5.1+dfsg-3) Section: debug Priority: optional Description: debug symbols for unicycler Build-Ids: e2787e46576bc031c2b8622c83a8bb37cb773ee2 drwxr-xr-x root/root 0 2025-02-05 20:27 ./ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/lib/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/lib/debug/.build-id/e2/ -rw-r--r-- root/root 7447016 2025-02-05 20:27 ./usr/lib/debug/.build-id/e2/787e46576bc031c2b8622c83a8bb37cb773ee2.debug drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/share/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-02-05 20:27 ./usr/share/doc/unicycler-dbgsym -> unicycler unicycler_0.5.1+dfsg-3_amd64.deb -------------------------------- new Debian package, version 2.0. size 897956 bytes: control archive=2360 bytes. 913 bytes, 16 lines control 3796 bytes, 43 lines md5sums 265 bytes, 12 lines * postinst #!/bin/sh 378 bytes, 12 lines * prerm #!/bin/sh Package: unicycler Version: 0.5.1+dfsg-3 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3210 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), default-jre, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14) Recommends: unicycler-data Section: science Priority: optional Homepage: https://github.com/rrwick/Unicycler Description: hybrid assembly pipeline for bacterial genomes Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly. drwxr-xr-x root/root 0 2025-02-05 20:27 ./ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/bin/ -rwxr-xr-x root/root 968 2025-02-05 20:27 ./usr/bin/unicycler drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/lib/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/ -rw-r--r-- root/root 50801 2025-02-05 20:27 ./usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-02-05 20:27 ./usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/dependency_links.txt -rw-r--r-- root/root 55 2025-02-05 20:27 ./usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/entry_points.txt -rw-r--r-- root/root 1 2025-02-05 20:27 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2025-02-05 20:27 ./usr/lib/python3/dist-packages/unicycler/unicycler.py -rw-r--r-- root/root 23579 2024-06-05 01:57 ./usr/lib/python3/dist-packages/unicycler/unicycler_align.py -rw-r--r-- root/root 875 2024-06-05 01:57 ./usr/lib/python3/dist-packages/unicycler/version.py drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/share/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/share/doc/unicycler/ -rw-r--r-- root/root 278 2025-01-26 21:54 ./usr/share/doc/unicycler/README.test -rw-r--r-- root/root 1117 2025-02-05 20:27 ./usr/share/doc/unicycler/changelog.Debian.gz -rw-r--r-- root/root 3146 2025-01-26 21:54 ./usr/share/doc/unicycler/copyright -rw-r--r-- root/root 985 2025-01-26 21:54 ./usr/share/doc/unicycler/run-unit-test drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/share/man/ drwxr-xr-x root/root 0 2025-02-05 20:27 ./usr/share/man/man1/ -rw-r--r-- root/root 1362 2025-02-05 20:27 ./usr/share/man/man1/unicycler.1.gz -rw-r--r-- root/root 998 2025-02-05 20:27 ./usr/share/man/man1/unicycler_align.1.gz -rw-r--r-- root/root 1086 2025-02-05 20:27 ./usr/share/man/man1/unicycler_check.1.gz -rw-r--r-- root/root 1982 2025-02-05 20:27 ./usr/share/man/man1/unicycler_polish.1.gz -rw-r--r-- root/root 1072 2025-02-05 20:27 ./usr/share/man/man1/unicycler_scrub.1.gz +------------------------------------------------------------------------------+ | Post Build Mon, 28 Jul 2025 09:10:34 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 28 Jul 2025 09:10:34 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 28 Jul 2025 09:10:36 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 182592 Build-Time: 231 Distribution: unstable Host Architecture: amd64 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdlLGiNZ/inputs/unicycler_0.5.1+dfsg-3.dsc Machine Architecture: amd64 Package: unicycler Package-Time: 246 Source-Version: 0.5.1+dfsg-3 Space: 182592 Status: successful Version: 0.5.1+dfsg-3 -------------------------------------------------------------------------------- Finished at 2025-07-28T09:10:30Z Build needed 00:04:06, 182592k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdlLGiNZ/out checking unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb: size differs for unicycler-dbgsym_0.5.1+dfsg-3_amd64.deb