=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdTJddFc/inputs/macs_3.0.2-2+b1_amd64.buildinfo Source: macs Version: 3.0.2-2 rebuilderd-worker node: osuosl43-amd64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 26 Dec 2025 14:21:11 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [137 kB] Get:7 https://deb.debian.org/debian sid InRelease [187 kB] Get:8 https://deb.debian.org/debian experimental InRelease [90.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,548 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [116 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [147 kB] Get:15 https://deb.debian.org/debian trixie-proposed-updates/non-free-firmware Sources [692 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [111 kB] Get:17 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [2,468 B] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [7,696 B] Get:19 https://deb.debian.org/debian forky/main Sources [10.6 MB] Get:20 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:21 https://deb.debian.org/debian sid/non-free-firmware Sources [9,692 B] Get:22 https://deb.debian.org/debian experimental/main Sources [357 kB] Get:23 https://deb.debian.org/debian experimental/non-free-firmware Sources [3,180 B] Fetched 33.9 MB in 4s (8,611 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.2-2.dsc' macs_3.0.2-2.dsc 2177 SHA256:03cffd4bce72f07489f7a9159a6ea0d85989b010183b81f025c0e0f75559bffb 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.2.orig.tar.gz' macs_3.0.2.orig.tar.gz 197484503 SHA256:33e877460f1b621ee85c78221b52d1e067b8f5aacdaf4d16bd887485bf636e08 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.2-2.debian.tar.xz' macs_3.0.2-2.debian.tar.xz 1267996 SHA256:ca759f92e14f1c814d6a35a9a14ca21f41e662a07510dbca7e447d65bf476061 33e877460f1b621ee85c78221b52d1e067b8f5aacdaf4d16bd887485bf636e08 macs_3.0.2.orig.tar.gz ca759f92e14f1c814d6a35a9a14ca21f41e662a07510dbca7e447d65bf476061 macs_3.0.2-2.debian.tar.xz 03cffd4bce72f07489f7a9159a6ea0d85989b010183b81f025c0e0f75559bffb macs_3.0.2-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 26 Dec 2025 14:21:23 +0000 | +------------------------------------------------------------------------------+ Rebuilding macs=3.0.2-2 in /srv/rebuilderd/tmp/rebuilderdTJddFc/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdTJddFc/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdTJddFc/inputs/macs_3.0.2-2+b1_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdTJddFc/inputs/macs_3.0.2-2+b1_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/macs-3.0.2 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [187 kB] Get:2 http://snapshot.debian.org/archive/debian/20251203T202911Z sid InRelease [176 kB] Get:3 http://snapshot.debian.org/archive/debian/20251221T203830Z sid InRelease [187 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages [10.2 MB] Get:5 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 Packages [10.2 MB] Get:6 http://snapshot.debian.org/archive/debian/20251221T203830Z sid/main amd64 Packages [10.2 MB] Fetched 31.2 MB in 3s (9319 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20251203T202911Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20251221T203830Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pip all 25.3+dfsg-1 [1384 kB] Fetched 1384 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmv2z2j5r/python3-pip_25.3+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (1879 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbdl8yjgi/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcrypt1 amd64 1:4.5.1-1 [98.0 kB] Fetched 98.0 kB in 0s (9367 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpzl6s48o1/libcrypt1_4.5.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libtool all 2.5.4-7 [540 kB] Fetched 540 kB in 0s (40.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9no3suib/libtool_2.5.4-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3.14-dev amd64 3.14.0-5 [507 kB] Fetched 507 kB in 0s (1419 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeobijnn3/python3.14-dev_3.14.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libsystemd0 amd64 259~rc2-1 [470 kB] Fetched 470 kB in 0s (33.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvi72s7r4/libsystemd0_259~rc2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.5+20251123-1 [277 kB] Fetched 277 kB in 0s (19.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjzwds_gg/ncurses-base_6.5+20251123-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.9-2 [1052 B] Fetched 1052 B in 0s (101 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqysn9uj5/python3-all_3.13.9-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.23.2 [92.4 kB] Fetched 92.4 kB in 0s (8801 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgyc3v6di/debianutils_5.23.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 tzdata all 2025b-5 [260 kB] Fetched 260 kB in 0s (22.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgmz9sk00/tzdata_2025b-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Fetched 25.5 kB in 0s (2513 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp00rinw6t/libffi8_3.5.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-cykhash amd64 2.0.0-3+b4 [666 kB] Fetched 666 kB in 0s (3657 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5tk_q7vj/python3-cykhash_2.0.0-3+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.10.0-3 [700 kB] Fetched 700 kB in 0s (48.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp86h7z8uk/findutils_4.10.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 0s (1094 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiuhyyvlq/python3-decorator_5.2.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Fetched 504 kB in 0s (32.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7zm0vs_v/python3.13-dev_3.13.9-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Fetched 1469 kB in 0s (72.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvyk4623l/man-db_2.13.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Fetched 865 kB in 0s (55.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ztnixea/libpython3.13-minimal_3.13.9-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (2570 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6n7m2ro_/sensible-utils_0.0.26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 binutils-common amd64 2.45.50.20251201-1 [2543 kB] Fetched 2543 kB in 0s (96.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphymf1qe5/binutils-common_2.45.50.20251201-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4 [1436 B] Fetched 1436 B in 0s (137 kB/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp1iqwypz7/gcc-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-10 [13.1 MB] Fetched 13.1 MB in 0s (85.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaf0gfjq8/g++-15-x86-64-linux-gnu_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn225jm68/gzip_1.13-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.9-2 [26.0 kB] Fetched 26.0 kB in 0s (2442 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt57irz7o/python3-dev_3.13.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libatomic1 amd64 15.2.0-10 [9496 B] Fetched 9496 B in 0s (942 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphfk3mu6o/libatomic1_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Fetched 43.6 kB in 0s (3940 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp0tmjrfil/file_5.46-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1jyyxdhc/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu8fcoede/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 g++-15 amd64 15.2.0-10 [24.8 kB] Fetched 24.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2fw8aoz2/g++-15_15.2.0-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libcc1-0 amd64 15.2.0-10 [42.7 kB] Fetched 42.7 kB in 0s (3775 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk1c1nif_/libcc1-0_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (52.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpla_oqqnr/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (772 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8lir91z1/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphx30sy0y/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libstdc++-15-dev amd64 15.2.0-10 [2444 kB] Fetched 2444 kB in 0s (96.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0xayvrfs/libstdc++-15-dev_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-sklearn-lib amd64 1.7.2+dfsg-3+b2 [4124 kB] Fetched 4124 kB in 0s (19.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3p2futjd/python3-sklearn-lib_1.7.2+dfsg-3+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Fetched 109 kB in 0s (10.8 MB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpdgd3sgxf/libmagic1t64_5.46-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 gcc-15 amd64 15.2.0-10 [529 kB] Fetched 529 kB in 0s (41.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1c80_ac1/gcc-15_15.2.0-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (47.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr8uz7sxt/libdpkg-perl_1.22.21_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Fetched 37.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpspg9qbe6/libbz2-1.0_1.0.8-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.9-2 [10.7 kB] Fetched 10.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4980qifp/libpython3-dev_3.13.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB] Fetched 58.2 kB in 0s (4660 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwihwlcga/libc-dev-bin_2.41-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Fetched 39.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg5rbre7u/libjansson4_2.14-2+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Fetched 2184 kB in 0s (94.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoil1g_9d/libpython3.13_3.13.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 debhelper all 13.28 [941 kB] Fetched 941 kB in 0s (59.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph449u0et/debhelper_13.28_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251221T203830Z sid/main amd64 dh-python all 6.20251204.1 [114 kB] Fetched 114 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi98q2xb3/dh-python_6.20251204.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-hmmlearn amd64 0.3.2-2+b3 [144 kB] Fetched 144 kB in 0s (723 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjuymjd0g/python3-hmmlearn_0.3.2-2+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4 [1196 B] Fetched 1196 B in 0s (110 kB/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpe5ndhvmq/g++-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.3.5+ds-2+b1 [7491 kB] Fetched 7491 kB in 0s (22.8 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.3.5+ds-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpofjps39e/python3-numpy_2.3.5+ds-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Fetched 162 kB in 0s (15.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07z8f3u6/ca-certificates_20250419_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (11.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmparx57z4_/debconf_1.5.91_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-4 [36.2 kB] Fetched 36.2 kB in 0s (1139 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2lluqyud/python3-build_1.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.5+20251123-1 [353 kB] Fetched 353 kB in 0s (30.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbc5f5zyc/libtinfo6_6.5+20251123-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bc amd64 1.07.1-4 [103 kB] Fetched 103 kB in 0s (1434 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpez1btd9f/bc_1.07.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (7083 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwhwhygix/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Fetched 5311 kB in 0s (118 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmfci3qpx/libpython3.13-dev_3.13.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libgomp1 amd64 15.2.0-10 [140 kB] Fetched 140 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0841vywj/libgomp1_15.2.0-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libjs-sphinxdoc all 8.2.3-10 [27.7 kB] Fetched 27.7 kB in 0s (1076 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaeqi4eb_/libjs-sphinxdoc_8.2.3-10_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libctf-nobfd0 amd64 2.45.50.20251201-1 [160 kB] Fetched 160 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ldl473j/libctf-nobfd0_2.45.50.20251201-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libselinux1 amd64 3.9-4+b1 [86.1 kB] Fetched 86.1 kB in 0s (8224 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqoqm9035/libselinux1_3.9-4+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Fetched 56.6 kB in 0s (5649 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjbjwa2yj/python3-packaging_25.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit1 amd64 1:4.1.2-1+b1 [60.2 kB] Fetched 60.2 kB in 0s (5202 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpgffq3th8/libaudit1_4.1.2-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Fetched 467 kB in 0s (2466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu49gugbj/libsimde-dev_0.8.2-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (5304 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpucquw4t9/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libctf0 amd64 2.45.50.20251201-1 [92.4 kB] Fetched 92.4 kB in 0s (8778 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6john67_/libctf0_2.45.50.20251201-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Fetched 1194 kB in 0s (65.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeyem0gmg/groff-base_1.23.0-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Fetched 1991 kB in 0s (88.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpegcuzy15/libc6-dev_2.41-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Fetched 764 kB in 0s (49.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_jcogui/python3.13_3.13.9-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1 [78.5 kB] Fetched 78.5 kB in 0s (7799 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp141j2pxk/libgdbm6t64_1.26-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn8yslxfd/sed_4.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 util-linux amd64 2.41.2-4 [1163 kB] Fetched 1163 kB in 0s (64.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp93sqwrw2/util-linux_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Fetched 21.7 kB in 0s (656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp21gk5sew/python3-wheel_0.46.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-2 [308 kB] Fetched 308 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_rhqzbw/libzstd1_1.5.7+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libblkid1 amd64 2.41.2-4 [174 kB] Fetched 174 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp87a_jht/libblkid1_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:15.2.0-4 [1564 B] Fetched 1564 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpcf7__0zr/cpp_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (74.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj3bep6ie/dpkg-dev_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libsmartcols1 amd64 2.41.2-4 [145 kB] Fetched 145 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ccwieco/libsmartcols1_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.9-2 [27.5 kB] Fetched 27.5 kB in 0s (2734 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbyarpjw/python3_3.13.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Fetched 88.9 kB in 0s (5834 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp3ore0omb/zlib1g_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.7-3 [3024 kB] Fetched 3024 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3katysvb/coreutils_9.7-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libgprofng0 amd64 2.45.50.20251201-1 [822 kB] Fetched 822 kB in 0s (55.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxc89abv3/libgprofng0_2.45.50.20251201-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-10 [709 kB] Fetched 709 kB in 0s (49.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoaorsuau/libdb5.3t64_5.3.28+dfsg2-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libc6 amd64 2.41-12 [2846 kB] Fetched 2846 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2v97cp8r/libc6_2.41-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libitm1 amd64 15.2.0-10 [26.5 kB] Fetched 26.5 kB in 0s (2633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmm41qv2l/libitm1_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (5868 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ybchc12/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.5.4-1 [2446 kB] Fetched 2446 kB in 0s (93.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13ti7zt2/libssl3t64_3.5.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Fetched 191 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprb8tu2i4/libreadline8t64_8.3-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.5.4-1 [308 kB] Fetched 308 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qsavnpl/openssl-provider-legacy_3.5.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1 [52.8 kB] Fetched 52.8 kB in 0s (4820 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3pi_3ldx/libgdbm-compat4t64_1.26-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Fetched 2257 kB in 0s (88.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_n3bwiry/python3.13-minimal_3.13.9-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libtsan2 amd64 15.2.0-10 [2491 kB] Fetched 2491 kB in 0s (91.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpntj83g18/libtsan2_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.27-1 [659 kB] Fetched 659 kB in 0s (48.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjm9z9us1/libisl23_0.27-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libpython3.14-stdlib amd64 3.14.0-5 [2254 kB] Fetched 2254 kB in 0s (33.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4rv13cbe/libpython3.14-stdlib_3.14.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Fetched 98.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8cadkul/bsdextrautils_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libperl5.40 amd64 5.40.1-7 [4317 kB] Fetched 4317 kB in 0s (121 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp99p5cqwj/libperl5.40_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Fetched 68.5 kB in 0s (6400 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpela8qpy1/libuchardet0_0.0.8-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-2 [55.8 kB] Fetched 55.8 kB in 0s (5202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpot5wh_6m/libmpc3_1.3.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (33.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4zuj9fyn/autoconf_2.72-3.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (19.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnuu6m3n_/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Fetched 54.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwfzi13iy/base-passwd_3.6.8_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Fetched 11.7 kB in 0s (413 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ctp9arv/python3-pyproject-hooks_1.2.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-10 [12.1 MB] Fetched 12.1 MB in 0s (134 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6a7ag8dd/cpp-15-x86-64-linux-gnu_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4 [5292 B] Fetched 5292 B in 0s (499 kB/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp2_h5zu0b/cpp-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Fetched 37.1 kB in 0s (3633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9nbd2hmc/python3-typeguard_4.4.4-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Fetched 477 kB in 0s (35.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy9h_ahqi/libunistring5_1.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libmount1 amd64 2.41.2-4 [211 kB] Fetched 211 kB in 0s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpykw2vk6p/libmount1_2.41.2-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libpython3.14-dev amd64 3.14.0-5 [5305 kB] Fetched 5305 kB in 0s (18.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5n4y6jcr/libpython3.14-dev_3.14.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-2+b1 [139 kB] Fetched 139 kB in 0s (2543 kB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.3.5+ds-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpnwlr4ex_/python3-numpy-dev_2.3.5+ds-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libgcc-s1 amd64 15.2.0-10 [71.5 kB] Fetched 71.5 kB in 0s (7065 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4d4ufjc7/libgcc-s1_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Fetched 298 kB in 0s (25.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8s6pg7j6/libpcre2-8-0_10.46-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Fetched 92.4 kB in 0s (8160 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmhcdjjj1/libdebhelper-perl_13.28_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.9-2 [1072 B] Fetched 1072 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7u5fda7_/libpython3-all-dev_3.13.9-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.5.2-1 [222 kB] Fetched 222 kB in 0s (2631 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi6kblt7g/python3-joblib_1.5.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libdebconfclient0 amd64 0.282 [10.9 kB] Fetched 10.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ui9sogq/libdebconfclient0_0.282_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libquadmath0 amd64 15.2.0-10 [145 kB] Fetched 145 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbllc54gw/libquadmath0_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Fetched 65.6 kB in 0s (0 B/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9_amd64.deb' to '/srv/rebuilderd/tmp/tmp3iwo4zm9/libproc2-0_4.0.4-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 binutils-x86-64-linux-gnu amd64 2.45.50.20251201-1 [1058 kB] Fetched 1058 kB in 0s (65.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcnuwulyv/binutils-x86-64-linux-gnu_2.45.50.20251201-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Fetched 165 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps76sbudm/libexpat1-dev_2.7.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Fetched 443 kB in 0s (35.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmi4qic7z/grep_3.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-5 [179 kB] Fetched 179 kB in 0s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpigza70j7/libpam-modules_1.7.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Fetched 215 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdm_8phvm/libblas3_3.12.1-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptspj_9lg/python3-autocommand_2.2.2-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Fetched 1496 kB in 0s (79.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcgpakfdh/openssl_3.5.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-5 [49.1 kB] Fetched 49.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4mltxak/libpam-modules-bin_1.7.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 dpkg amd64 1.22.21 [1538 kB] Fetched 1538 kB in 0s (81.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqfhjkp6z/dpkg_1.22.21_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Fetched 42.1 kB in 0s (4163 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwv9vazd7/libpipeline1_1.5.8-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251221T203830Z sid/main amd64 pybuild-plugin-pyproject all 6.20251204.1 [12.3 kB] Fetched 12.3 kB in 0s (648 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv5qsi5t9/pybuild-plugin-pyproject_6.20251204.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libcap2 amd64 1:2.75-10+b2 [28.7 kB] Fetched 28.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpwgklbah2/libcap2_2.75-10+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libuuid1 amd64 2.41.2-4 [38.7 kB] Fetched 38.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqhdalh2g/libuuid1_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (3892 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpawg5nskt/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 diffutils amd64 1:3.12-1 [405 kB] Fetched 405 kB in 0s (32.9 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpio5_0p1u/diffutils_3.12-1_amd64.deb' Downloading dependency 1 of 220: python3-pip:amd64=25.3+dfsg-1 Downloading dependency 2 of 220: libfile-stripnondeterminism-perl:amd64=1.15.0-1 Downloading dependency 3 of 220: libcrypt1:amd64=1:4.5.1-1 Downloading dependency 4 of 220: libtool:amd64=2.5.4-7 Downloading dependency 5 of 220: python3.14-dev:amd64=3.14.0-5 Downloading dependency 6 of 220: libsystemd0:amd64=259~rc2-1 Downloading dependency 7 of 220: ncurses-base:amd64=6.5+20251123-1 Downloading dependency 8 of 220: python3-all:amd64=3.13.9-2 Downloading dependency 9 of 220: debianutils:amd64=5.23.2 Downloading dependency 10 of 220: tzdata:amd64=2025b-5 Downloading dependency 11 of 220: libffi8:amd64=3.5.2-2 Downloading dependency 12 of 220: python3-cykhash:amd64=2.0.0-3+b4 Downloading dependency 13 of 220: findutils:amd64=4.10.0-3 Downloading dependency 14 of 220: python3-decorator:amd64=5.2.1-2 Downloading dependency 15 of 220: 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Downloading dependency 110 of 220: libpython3-all-dev:amd64=3.13.9-2 Downloading dependency 111 of 220: python3-joblib:amd64=1.5.2-1 Downloading dependency 112 of 220: libdebconfclient0:amd64=0.282 Downloading dependency 113 of 220: libquadmath0:amd64=15.2.0-10 Downloading dependency 114 of 220: libproc2-0:amd64=2:4.0.4-9 Downloading dependency 115 of 220: binutils-x86-64-linux-gnu:amd64=2.45.50.20251201-1 Downloading dependency 116 of 220: libexpat1-dev:amd64=2.7.3-1 Downloading dependency 117 of 220: grep:amd64=3.12-1 Downloading dependency 118 of 220: libpam-modules:amd64=1.7.0-5 Downloading dependency 119 of 220: libblas3:amd64=3.12.1-7 Downloading dependency 120 of 220: python3-autocommand:amd64=2.2.2-3 Downloading dependency 121 of 220: openssl:amd64=3.5.4-1 Downloading dependency 122 of 220: libpam-modules-bin:amd64=1.7.0-5 Downloading dependency 123 of 220: dpkg:amd64=1.22.21 Downloading dependency 124 of 220: libpipeline1:amd64=1.5.8-2 Downloading dependency 125 of 220: pybuild-plugin-pyproject:amd64=6.20251204.1 Downloading dependency 126 of 220: libcap2:amd64=1:2.75-10+b2 Downloading dependency 127 of 220: libuuid1:amd64=2.41.2-4 Downloading dependency 128 of 220: init-system-helpers:amd64=1.69 Downloading dependency 129 of 220: diffutils:amd64=1:3.12-1 Downloading dependency 130 of 220: hostname:amd64=3.25Get:1 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpad_36efh/hostname_3.25_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libhwasan0 amd64 15.2.0-10 [1538 kB] Fetched 1538 kB in 0s (84.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplmg4jt4_/libhwasan0_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Fetched 2785 kB in 0s (90.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpummipttg/liblapack3_3.12.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcap-ng0 amd64 0.8.5-4+b2 [17.5 kB] Fetched 17.5 kB in 0s (1693 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkt51w26b/libcap-ng0_0.8.5-4+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpllu71lx6/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.9-2 [10.5 kB] Fetched 10.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv3soixa2/libpython3-stdlib_3.13.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Fetched 1965 kB in 0s (93.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmponmbl0tc/libpython3.13-stdlib_3.13.9-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpn7171d14/libattr1_2.5.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 make amd64 4.4.1-3 [463 kB] Fetched 463 kB in 0s (37.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeht0pa0g/make_4.4.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcc_ky3ra/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl-base amd64 5.40.1-7 [1679 kB] Fetched 1679 kB in 0s (82.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphkuqtj1b/perl-base_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl amd64 5.40.1-7 [267 kB] Fetched 267 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkclt0y1f/perl_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.1-2 [660 kB] Fetched 660 kB in 0s (48.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8wkh43th/xz-utils_5.8.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Fetched 882 kB in 0s (57.7 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9_amd64.deb' to '/srv/rebuilderd/tmp/tmpq0jm4i7h/procps_4.0.4-9_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (432 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphoz1yb01/build-essential_12.12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.9-2 [1072 B] Fetched 1072 B in 0s (102 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp18tip2ty/python3-all-dev_3.13.9-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.16.3-2 [18.6 MB] Fetched 18.6 MB in 1s (26.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyn2kau7c/python3-scipy_1.16.3-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Fetched 248 kB in 0s (4426 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqn4sfkkk/libqhull-r8.0_2020.2-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 patch amd64 2.8-2 [134 kB] Fetched 134 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzl23y59/patch_2.8-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Fetched 968 kB in 0s (63.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpauk21yi1/libsqlite3-0_3.46.1-8_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (1219 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64u5mubi/dh-autoreconf_21_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.1-2 [310 kB] Fetched 310 kB in 0s (27.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmibjx_ud/liblzma5_5.8.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 linux-libc-dev all 6.17.10-1 [2560 kB] Fetched 2560 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxagqjz9/linux-libc-dev_6.17.10-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 liblsan0 amd64 15.2.0-10 [1248 kB] Fetched 1248 kB in 0s (71.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpat6tve14/liblsan0_15.2.0-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 cpp-15 amd64 15.2.0-10 [1276 B] Fetched 1276 B in 0s (119 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj2x91gcd/cpp-15_15.2.0-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libc-bin amd64 2.41-12 [637 kB] Fetched 637 kB in 0s (47.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmnv2zu20/libc-bin_2.41-12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Fetched 325 kB in 0s (27.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3idxiiii/m4_1.4.20-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Fetched 836 kB in 0s (57.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_35_wxbe/python3-pygments_2.18.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 920 kB in 0s (60.2 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpxrcf4qo7/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:15.2.0-4 [5160 B] Fetched 5160 B in 0s (454 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmph0k_irqa/gcc_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (29.9 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpflm2sps9/libmagic-mgc_5.46-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libstdc++6 amd64 15.2.0-10 [736 kB] Fetched 736 kB in 0s (52.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpalh5ulb_/libstdc++6_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Fetched 112 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9v7w2pl/libexpat1_2.7.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Fetched 36.3 kB in 0s (3570 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpex7dzjp5/libmd0_1.1.0-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Fetched 815 kB in 0s (54.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf7mluay2/tar_1.35+dfsg-3.1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3.14 amd64 3.14.0-5 [817 kB] Fetched 817 kB in 0s (6635 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9v3yq637/python3.14_3.14.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-5 [69.9 kB] Fetched 69.9 kB in 0s (6783 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiqys3p05/libpam0g_1.7.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.5.1-1 [128 kB] Fetched 128 kB in 0s (12.7 MB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.5.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpnefi42mx/libcrypt-dev_4.5.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-2 [742 kB] Fetched 742 kB in 0s (51.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5gy90h5d/libmpfr6_4.2.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdzoxb22g/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bash amd64 5.3-1 [1556 kB] Fetched 1556 kB in 0s (81.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps95b725b/bash_5.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Fetched 198 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_t_bl51w/help2man_1.49.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libudev1 amd64 259~rc2-1 [157 kB] Fetched 157 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeu6qqh7q/libudev1_259~rc2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpudgu84kn/libacl1_2.3.2-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpoh9d6bpw/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:15.2.0-4 [1344 B] Fetched 1344 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpc_9lkrge/g++_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libgcc-15-dev amd64 15.2.0-10 [2718 kB] Fetched 2718 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmpxx28yk/libgcc-15-dev_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.5+20251123-1 [136 kB] Fetched 136 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxabdoz9_/libncursesw6_6.5+20251123-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libpython3.14 amd64 3.14.0-5 [2296 kB] Fetched 2296 kB in 0s (15.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpktgtrokn/libpython3.14_3.14.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libseccomp2 amd64 2.6.0-2+b1 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcewqt4e8/libseccomp2_2.6.0-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 binutils amd64 2.45.50.20251201-1 [281 kB] Fetched 281 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcch5z7zr/binutils_2.45.50.20251201-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 gcc-15-base amd64 15.2.0-10 [53.8 kB] Fetched 53.8 kB in 0s (5253 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptqxe_5t6/gcc-15-base_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Fetched 7432 B in 0s (321 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcubicmij/python3-iniconfig_2.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.9-2 [27.5 kB] Fetched 27.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj4b2iufr/python3-minimal_3.13.9-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libsframe2 amd64 2.45.50.20251201-1 [80.2 kB] Fetched 80.2 kB in 0s (7986 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa79z_5z8/libsframe2_2.45.50.20251201-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-sklearn all 1.7.2+dfsg-3 [2601 kB] Fetched 2601 kB in 0s (37.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsas45hu/python3-sklearn_1.7.2+dfsg-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Fetched 245 kB in 0s (22.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphsq_0fek/gettext-base_0.23.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Fetched 21.2 kB in 0s (1018 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmhnbzw7y/python3-threadpoolctl_3.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Fetched 15.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamfzmvdi/liblocale-gettext-perl_1.07-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Fetched 641 kB in 0s (45.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu0tp9096/libxml2-16_2.15.1+dfsg-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdu9d1org/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Fetched 1687 kB in 0s (79.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpatodchyb/gettext_0.23.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.1.6+dfsg-2+b1 [3313 kB] Fetched 3313 kB in 0s (37.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaevnoruw/cython3_3.1.6+dfsg-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libpython3.14-minimal amd64 3.14.0-5 [896 kB] Fetched 896 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf7fhpqc7/libpython3.14-minimal_3.14.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Fetched 574 kB in 0s (38.5 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpxuomv4ap/libgmp10_6.3.0+dfsg-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-10 [23.4 MB] Fetched 23.4 MB in 0s (141 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2kr8ewnk/gcc-15-x86-64-linux-gnu_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Fetched 98.5 kB in 0s (8583 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpas0sgp53/dash_0.5.12-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3.14-minimal amd64 3.14.0-5 [2356 kB] Fetched 2356 kB in 0s (6710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6hqe9m5q/python3.14-minimal_3.14.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (2139 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuii256cb/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (2929 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd9g5wrhh/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (852 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkkqb1kka/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14 [72.9 kB] Fetched 72.9 kB in 0s (6641 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5_wgp1yj/base-files_14_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libbinutils amd64 2.45.50.20251201-1 [539 kB] Fetched 539 kB in 0s (27.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjlc3xvom/libbinutils_2.45.50.20251201-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Fetched 92.4 kB in 0s (5293 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj_mg6ezj/python3-typing-extensions_4.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (19.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8h62x8rk/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libasan8 amd64 15.2.0-10 [2779 kB] Fetched 2779 kB in 0s (72.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu4i3gk7n/libasan8_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Fetched 74.8 kB in 0s (7264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9rjvmbet/readline-common_8.3-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Fetched 141 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcarqk8_9/mawk_1.3.4.20250131-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Fetched 185 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjhmy39ii/libelf1t64_0.194-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (3847 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx01a9xha/bzip2_1.0.8-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Fetched 18.6 kB in 0s (700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpco627nck/python3-installer_0.7.0+dfsg1-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Fetched 878 kB in 0s (53.3 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-3_all.deb' to '/srv/rebuilderd/tmp/tmp6y9nk8ja/automake_1.18.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libubsan1 amd64 15.2.0-10 [1108 kB] Fetched 1108 kB in 0s (60.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprkqn_vss/libubsan1_15.2.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (56.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaeaujgv4/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Fetched 772 kB in 0s (51.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplyilhmm3/autopoint_0.23.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Fetched 108 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp58hhqv3e/dwz_0.16-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 libgfortran5 amd64 15.2.0-10 [862 kB] Fetched 862 kB in 0s (2951 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5obr7v5r/libgfortran5_15.2.0-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3-pytest all 8.4.2-1 [266 kB] Fetched 266 kB in 0s (7830 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplnsd1btc/python3-pytest_8.4.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.5+20251123-1 [445 kB] Fetched 445 kB in 0s (34.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj67kbmqj/ncurses-bin_6.5+20251123-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251203T202911Z sid/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Fetched 27.1 kB in 0s (976 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0_c03v6/python3-pluggy_1.6.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sysvinit-utils amd64 3.15-6 [35.0 kB] Fetched 35.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppabng940/sysvinit-utils_3.15-6_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpr3g1djoo/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb 127.0.0.1 - - [26/Dec/2025 14:23:16] code 404, message File not found 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:41669 ./ InRelease 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:41669 ./ Release [462 B] 127.0.0.1 - - [26/Dec/2025 14:23:16] code 404, message File not found 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:41669 ./ Release.gpg 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:41669 ./ Packages [268 kB] Fetched 268 kB in 0s (13.1 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./gcc-15-base_15.2.0-10_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./libc6_2.41-12_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./libgcc-s1_15.2.0-10_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./mawk_1.3.4.20250131-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./base-files_14_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./libtinfo6_6.5%2b20251123-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./debianutils_5.23.2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./bash_5.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./libacl1_2.3.2-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./libattr1_2.5.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./libcap2_2.75-10%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:16] "GET /./libgmp10_6.3.0%2bdfsg-5_amd64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./libsmartcols1_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./libudev1_259%7erc2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./libuuid1_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./util-linux_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./libdebconfclient0_0.282_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./base-passwd_3.6.8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./libc-bin_2.41-12_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./ncurses-base_6.5%2b20251123-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:17] "GET /./sysvinit-utils_3.15-6_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb 127.0.0.1 - - [26/Dec/2025 14:23:18] code 404, message File not found 127.0.0.1 - - [26/Dec/2025 14:23:18] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:41669 ./ InRelease 127.0.0.1 - - [26/Dec/2025 14:23:18] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:41669 ./ Release 127.0.0.1 - - [26/Dec/2025 14:23:18] code 404, message File not found 127.0.0.1 - - [26/Dec/2025 14:23:18] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:41669 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [26/Dec/2025 14:23:30] "GET /./liblocale-gettext-perl_1.07-7%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:30] "GET /./libexpat1_2.7.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:30] "GET /./libpython3.13-minimal_3.13.9-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:30] "GET /./python3.13-minimal_3.13.9-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:30] "GET /./python3-minimal_3.13.9-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:30] "GET /./media-types_14.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:30] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:30] "GET /./tzdata_2025b-5_all.deb HTTP/1.1" 200 - 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127.0.0.1 - - [26/Dec/2025 14:23:32] "GET /./python3-pluggy_1.6.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:32] "GET /./python3-pytest_8.4.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Dec/2025 14:23:32] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpr3g1djoo/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb Reading package lists... Building dependency tree... Reading state information... python3-pip is already the newest version (25.3+dfsg-1). python3-pip set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1). libtool is already the newest version (2.5.4-7). libtool set to manually installed. python3.14-dev is already the newest version (3.14.0-5). python3.14-dev set to manually installed. libsystemd0 is already the newest version (259~rc2-1). ncurses-base is already the newest version (6.5+20251123-1). python3-all is already the newest version (3.13.9-2). python3-all set to manually installed. debianutils is already the newest version (5.23.2). tzdata is already the newest version (2025b-5). tzdata set to manually installed. libffi8 is already the newest version (3.5.2-2). libffi8 set to manually installed. python3-cykhash is already the newest version (2.0.0-3+b4). python3-cykhash set to manually installed. findutils is already the newest version (4.10.0-3). python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. python3.13-dev is already the newest version (3.13.9-1). python3.13-dev set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libpython3.13-minimal is already the newest version (3.13.9-1). libpython3.13-minimal set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. binutils-common is already the newest version (2.45.50.20251201-1). binutils-common set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:15.2.0-4). gcc-x86-64-linux-gnu set to manually installed. g++-15-x86-64-linux-gnu is already the newest version (15.2.0-10). g++-15-x86-64-linux-gnu set to manually installed. gzip is already the newest version (1.13-1). python3-dev is already the newest version (3.13.9-2). python3-dev set to manually installed. libatomic1 is already the newest version (15.2.0-10). libatomic1 set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. g++-15 is already the newest version (15.2.0-10). g++-15 set to manually installed. libcc1-0 is already the newest version (15.2.0-10). libcc1-0 set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-10). libstdc++-15-dev set to manually installed. python3-sklearn-lib is already the newest version (1.7.2+dfsg-3+b2). python3-sklearn-lib set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. gcc-15 is already the newest version (15.2.0-10). gcc-15 set to manually installed. libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libpython3-dev is already the newest version (3.13.9-2). libpython3-dev set to manually installed. libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libpython3.13 is already the newest version (3.13.9-1). libpython3.13 set to manually installed. debhelper is already the newest version (13.28). debhelper set to manually installed. dh-python is already the newest version (6.20251204.1). dh-python set to manually installed. python3-hmmlearn is already the newest version (0.3.2-2+b3). python3-hmmlearn set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:15.2.0-4). g++-x86-64-linux-gnu set to manually installed. python3-numpy is already the newest version (1:2.3.5+ds-2+b1). python3-numpy set to manually installed. ca-certificates is already the newest version (20250419). ca-certificates set to manually installed. debconf is already the newest version (1.5.91). python3-build is already the newest version (1.2.2-4). python3-build set to manually installed. libtinfo6 is already the newest version (6.5+20251123-1). bc is already the newest version (1.07.1-4). bc set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. libpython3.13-dev is already the newest version (3.13.9-1). libpython3.13-dev set to manually installed. libgomp1 is already the newest version (15.2.0-10). libgomp1 set to manually installed. libjs-sphinxdoc is already the newest version (8.2.3-10). libjs-sphinxdoc set to manually installed. libctf-nobfd0 is already the newest version (2.45.50.20251201-1). libctf-nobfd0 set to manually installed. libselinux1 is already the newest version (3.9-4+b1). python3-packaging is already the newest version (25.0-1). python3-packaging set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). libsimde-dev is already the newest version (0.8.2-3). libsimde-dev set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. libctf0 is already the newest version (2.45.50.20251201-1). libctf0 set to manually installed. groff-base is already the newest version (1.23.0-10). groff-base set to manually installed. libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. python3.13 is already the newest version (3.13.9-1). python3.13 set to manually installed. libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. sed is already the newest version (4.9-2). util-linux is already the newest version (2.41.2-4). python3-wheel is already the newest version (0.46.1-2). python3-wheel set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-2). libblkid1 is already the newest version (2.41.2-4). cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. libsmartcols1 is already the newest version (2.41.2-4). python3 is already the newest version (3.13.9-2). python3 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). coreutils is already the newest version (9.7-3). libgprofng0 is already the newest version (2.45.50.20251201-1). libgprofng0 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-10). libc6 is already the newest version (2.41-12). libitm1 is already the newest version (15.2.0-10). libitm1 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libssl3t64 is already the newest version (3.5.4-1). libreadline8t64 is already the newest version (8.3-3). libreadline8t64 set to manually installed. openssl-provider-legacy is already the newest version (3.5.4-1). libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. python3.13-minimal is already the newest version (3.13.9-1). python3.13-minimal set to manually installed. libtsan2 is already the newest version (15.2.0-10). libtsan2 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libpython3.14-stdlib is already the newest version (3.14.0-5). libpython3.14-stdlib set to manually installed. bsdextrautils is already the newest version (2.41.2-4). bsdextrautils set to manually installed. libperl5.40 is already the newest version (5.40.1-7). libperl5.40 set to manually installed. libuchardet0 is already the newest version (0.0.8-2). libuchardet0 set to manually installed. libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libpam-runtime is already the newest version (1.7.0-5). base-passwd is already the newest version (3.6.8). python3-pyproject-hooks is already the newest version (1.2.0-1). python3-pyproject-hooks set to manually installed. cpp-15-x86-64-linux-gnu is already the newest version (15.2.0-10). cpp-15-x86-64-linux-gnu set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:15.2.0-4). cpp-x86-64-linux-gnu set to manually installed. python3-typeguard is already the newest version (4.4.4-1). python3-typeguard set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. libmount1 is already the newest version (2.41.2-4). libpython3.14-dev is already the newest version (3.14.0-5). libpython3.14-dev set to manually installed. python3-numpy-dev is already the newest version (1:2.3.5+ds-2+b1). python3-numpy-dev set to manually installed. libgcc-s1 is already the newest version (15.2.0-10). libpcre2-8-0 is already the newest version (10.46-1). libdebhelper-perl is already the newest version (13.28). libdebhelper-perl set to manually installed. libpython3-all-dev is already the newest version (3.13.9-2). libpython3-all-dev set to manually installed. python3-joblib is already the newest version (1.5.2-1). python3-joblib set to manually installed. libdebconfclient0 is already the newest version (0.282). libquadmath0 is already the newest version (15.2.0-10). libquadmath0 set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9). libproc2-0 set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.45.50.20251201-1). binutils-x86-64-linux-gnu set to manually installed. libexpat1-dev is already the newest version (2.7.3-1). libexpat1-dev set to manually installed. grep is already the newest version (3.12-1). libpam-modules is already the newest version (1.7.0-5). libblas3 is already the newest version (3.12.1-7). libblas3 set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. openssl is already the newest version (3.5.4-1). openssl set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). dpkg is already the newest version (1.22.21). libpipeline1 is already the newest version (1.5.8-2). libpipeline1 set to manually installed. pybuild-plugin-pyproject is already the newest version (6.20251204.1). pybuild-plugin-pyproject set to manually installed. libcap2 is already the newest version (1:2.75-10+b2). libuuid1 is already the newest version (2.41.2-4). init-system-helpers is already the newest version (1.69). diffutils is already the newest version (1:3.12-1). hostname is already the newest version (3.25). libhwasan0 is already the newest version (15.2.0-10). libhwasan0 set to manually installed. liblapack3 is already the newest version (3.12.1-7). liblapack3 set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b2). dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. libpython3-stdlib is already the newest version (3.13.9-2). libpython3-stdlib set to manually installed. libpython3.13-stdlib is already the newest version (3.13.9-1). libpython3.13-stdlib set to manually installed. libattr1 is already the newest version (1:2.5.2-3). make is already the newest version (4.4.1-3). make set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. perl-base is already the newest version (5.40.1-7). perl is already the newest version (5.40.1-7). perl set to manually installed. xz-utils is already the newest version (5.8.1-2). xz-utils set to manually installed. procps is already the newest version (2:4.0.4-9). procps set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. python3-all-dev is already the newest version (3.13.9-2). python3-all-dev set to manually installed. python3-scipy is already the newest version (1.16.3-2). python3-scipy set to manually installed. libqhull-r8.0 is already the newest version (2020.2-7). libqhull-r8.0 set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. libsqlite3-0 is already the newest version (3.46.1-8). libsqlite3-0 set to manually installed. dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. liblzma5 is already the newest version (5.8.1-2). linux-libc-dev is already the newest version (6.17.10-1). linux-libc-dev set to manually installed. liblsan0 is already the newest version (15.2.0-10). liblsan0 set to manually installed. cpp-15 is already the newest version (15.2.0-10). cpp-15 set to manually installed. libc-bin is already the newest version (2.41-12). m4 is already the newest version (1.4.20-2). m4 set to manually installed. python3-pygments is already the newest version (2.18.0+dfsg-2). python3-pygments set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. gcc is already the newest version (4:15.2.0-4). gcc set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. libstdc++6 is already the newest version (15.2.0-10). libstdc++6 set to manually installed. libexpat1 is already the newest version (2.7.3-1). libexpat1 set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). tar is already the newest version (1.35+dfsg-3.1). python3.14 is already the newest version (3.14.0-5). python3.14 set to manually installed. libpam0g is already the newest version (1.7.0-5). libcrypt-dev is already the newest version (1:4.5.1-1). libcrypt-dev set to manually installed. libmpfr6 is already the newest version (4.2.2-2). libmpfr6 set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. bash is already the newest version (5.3-1). help2man is already the newest version (1.49.3). help2man set to manually installed. libudev1 is already the newest version (259~rc2-1). libacl1 is already the newest version (2.3.2-2+b1). libaudit-common is already the newest version (1:4.1.2-1). g++ is already the newest version (4:15.2.0-4). g++ set to manually installed. libgcc-15-dev is already the newest version (15.2.0-10). libgcc-15-dev set to manually installed. libncursesw6 is already the newest version (6.5+20251123-1). libncursesw6 set to manually installed. libpython3.14 is already the newest version (3.14.0-5). libpython3.14 set to manually installed. libseccomp2 is already the newest version (2.6.0-2+b1). libseccomp2 set to manually installed. binutils is already the newest version (2.45.50.20251201-1). binutils set to manually installed. gcc-15-base is already the newest version (15.2.0-10). python3-iniconfig is already the newest version (2.1.0-1). python3-iniconfig set to manually installed. python3-minimal is already the newest version (3.13.9-2). python3-minimal set to manually installed. libsframe2 is already the newest version (2.45.50.20251201-1). libsframe2 set to manually installed. python3-sklearn is already the newest version (1.7.2+dfsg-3). python3-sklearn set to manually installed. gettext-base is already the newest version (0.23.2-1). gettext-base set to manually installed. python3-threadpoolctl is already the newest version (3.1.0-1). python3-threadpoolctl set to manually installed. liblocale-gettext-perl is already the newest version (1.07-7+b1). liblocale-gettext-perl set to manually installed. libxml2-16 is already the newest version (2.15.1+dfsg-2+b1). libxml2-16 set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. gettext is already the newest version (0.23.2-1). gettext set to manually installed. cython3 is already the newest version (3.1.6+dfsg-2+b1). cython3 set to manually installed. libpython3.14-minimal is already the newest version (3.14.0-5). libpython3.14-minimal set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5). gcc-15-x86-64-linux-gnu is already the newest version (15.2.0-10). gcc-15-x86-64-linux-gnu set to manually installed. dash is already the newest version (0.5.12-12). python3.14-minimal is already the newest version (3.14.0-5). python3.14-minimal set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. base-files is already the newest version (14). libbinutils is already the newest version (2.45.50.20251201-1). libbinutils set to manually installed. python3-typing-extensions is already the newest version (4.15.0-1). python3-typing-extensions set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libasan8 is already the newest version (15.2.0-10). libasan8 set to manually installed. readline-common is already the newest version (8.3-3). readline-common set to manually installed. mawk is already the newest version (1.3.4.20250131-1). libelf1t64 is already the newest version (0.194-1). libelf1t64 set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. python3-installer is already the newest version (0.7.0+dfsg1-3). python3-installer set to manually installed. automake is already the newest version (1:1.18.1-3). automake set to manually installed. libubsan1 is already the newest version (15.2.0-10). libubsan1 set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. autopoint is already the newest version (0.23.2-1). autopoint set to manually installed. dwz is already the newest version (0.16-2). dwz set to manually installed. libgfortran5 is already the newest version (15.2.0-10). libgfortran5 set to manually installed. python3-pytest is already the newest version (8.4.2-1). python3-pytest set to manually installed. ncurses-bin is already the newest version (6.5+20251123-1). python3-pluggy is already the newest version (1.6.0-1). python3-pluggy set to manually installed. sysvinit-utils is already the newest version (3.15-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb (Reading database ... 24331 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.nXUWO5BWnb... I: success in 97.9269 seconds Downloading dependency 131 of 220: libhwasan0:amd64=15.2.0-10 Downloading dependency 132 of 220: liblapack3:amd64=3.12.1-7 Downloading dependency 133 of 220: libcap-ng0:amd64=0.8.5-4+b2 Downloading dependency 134 of 220: dh-strip-nondeterminism:amd64=1.15.0-1 Downloading dependency 135 of 220: libpython3-stdlib:amd64=3.13.9-2 Downloading dependency 136 of 220: libpython3.13-stdlib:amd64=3.13.9-1 Downloading dependency 137 of 220: libattr1:amd64=1:2.5.2-3 Downloading dependency 138 of 220: make:amd64=4.4.1-3 Downloading dependency 139 of 220: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 140 of 220: perl-base:amd64=5.40.1-7 Downloading dependency 141 of 220: perl:amd64=5.40.1-7 Downloading dependency 142 of 220: xz-utils:amd64=5.8.1-2 Downloading dependency 143 of 220: procps:amd64=2:4.0.4-9 Downloading dependency 144 of 220: build-essential:amd64=12.12 Downloading dependency 145 of 220: python3-all-dev:amd64=3.13.9-2 Downloading dependency 146 of 220: python3-scipy:amd64=1.16.3-2 Downloading dependency 147 of 220: libqhull-r8.0:amd64=2020.2-7 Downloading dependency 148 of 220: patch:amd64=2.8-2 Downloading dependency 149 of 220: libsqlite3-0:amd64=3.46.1-8 Downloading dependency 150 of 220: dh-autoreconf:amd64=21 Downloading dependency 151 of 220: liblzma5:amd64=5.8.1-2 Downloading dependency 152 of 220: linux-libc-dev:amd64=6.17.10-1 Downloading dependency 153 of 220: liblsan0:amd64=15.2.0-10 Downloading dependency 154 of 220: cpp-15:amd64=15.2.0-10 Downloading dependency 155 of 220: libc-bin:amd64=2.41-12 Downloading dependency 156 of 220: m4:amd64=1.4.20-2 Downloading dependency 157 of 220: python3-pygments:amd64=2.18.0+dfsg-2 Downloading dependency 158 of 220: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 159 of 220: gcc:amd64=4:15.2.0-4 Downloading dependency 160 of 220: libmagic-mgc:amd64=1:5.46-5 Downloading dependency 161 of 220: libstdc++6:amd64=15.2.0-10 Downloading dependency 162 of 220: libexpat1:amd64=2.7.3-1 Downloading dependency 163 of 220: libmd0:amd64=1.1.0-2+b1 Downloading dependency 164 of 220: tar:amd64=1.35+dfsg-3.1 Downloading dependency 165 of 220: python3.14:amd64=3.14.0-5 Downloading dependency 166 of 220: libpam0g:amd64=1.7.0-5 Downloading dependency 167 of 220: libcrypt-dev:amd64=1:4.5.1-1 Downloading dependency 168 of 220: libmpfr6:amd64=4.2.2-2 Downloading dependency 169 of 220: python3-jaraco.functools:amd64=4.1.0-1 Downloading dependency 170 of 220: bash:amd64=5.3-1 Downloading dependency 171 of 220: help2man:amd64=1.49.3 Downloading dependency 172 of 220: libudev1:amd64=259~rc2-1 Downloading dependency 173 of 220: libacl1:amd64=2.3.2-2+b1 Downloading dependency 174 of 220: libaudit-common:amd64=1:4.1.2-1 Downloading dependency 175 of 220: g++:amd64=4:15.2.0-4 Downloading dependency 176 of 220: libgcc-15-dev:amd64=15.2.0-10 Downloading dependency 177 of 220: libncursesw6:amd64=6.5+20251123-1 Downloading dependency 178 of 220: libpython3.14:amd64=3.14.0-5 Downloading dependency 179 of 220: libseccomp2:amd64=2.6.0-2+b1 Downloading dependency 180 of 220: binutils:amd64=2.45.50.20251201-1 Downloading dependency 181 of 220: gcc-15-base:amd64=15.2.0-10 Downloading dependency 182 of 220: python3-iniconfig:amd64=2.1.0-1 Downloading dependency 183 of 220: python3-minimal:amd64=3.13.9-2 Downloading dependency 184 of 220: libsframe2:amd64=2.45.50.20251201-1 Downloading dependency 185 of 220: python3-sklearn:amd64=1.7.2+dfsg-3 Downloading dependency 186 of 220: gettext-base:amd64=0.23.2-1 Downloading dependency 187 of 220: python3-threadpoolctl:amd64=3.1.0-1 Downloading dependency 188 of 220: liblocale-gettext-perl:amd64=1.07-7+b1 Downloading dependency 189 of 220: libxml2-16:amd64=2.15.1+dfsg-2+b1 Downloading dependency 190 of 220: python3-pkg-resources:amd64=78.1.1-0.1 Downloading dependency 191 of 220: gettext:amd64=0.23.2-1 Downloading dependency 192 of 220: cython3:amd64=3.1.6+dfsg-2+b1 Downloading dependency 193 of 220: libpython3.14-minimal:amd64=3.14.0-5 Downloading dependency 194 of 220: libgmp10:amd64=2:6.3.0+dfsg-5 Downloading dependency 195 of 220: gcc-15-x86-64-linux-gnu:amd64=15.2.0-10 Downloading dependency 196 of 220: dash:amd64=0.5.12-12 Downloading dependency 197 of 220: python3.14-minimal:amd64=3.14.0-5 Downloading dependency 198 of 220: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 199 of 220: python3-inflect:amd64=7.5.0-1 Downloading dependency 200 of 220: python3-zipp:amd64=3.23.0-1 Downloading dependency 201 of 220: base-files:amd64=14 Downloading dependency 202 of 220: libbinutils:amd64=2.45.50.20251201-1 Downloading dependency 203 of 220: python3-typing-extensions:amd64=4.15.0-1 Downloading dependency 204 of 220: po-debconf:amd64=1.0.21+nmu1 Downloading dependency 205 of 220: libasan8:amd64=15.2.0-10 Downloading dependency 206 of 220: readline-common:amd64=8.3-3 Downloading dependency 207 of 220: mawk:amd64=1.3.4.20250131-1 Downloading dependency 208 of 220: libelf1t64:amd64=0.194-1 Downloading dependency 209 of 220: bzip2:amd64=1.0.8-6 Downloading dependency 210 of 220: python3-installer:amd64=0.7.0+dfsg1-3 Downloading dependency 211 of 220: automake:amd64=1:1.18.1-3 Downloading dependency 212 of 220: libubsan1:amd64=15.2.0-10 Downloading dependency 213 of 220: perl-modules-5.40:amd64=5.40.1-7 Downloading dependency 214 of 220: autopoint:amd64=0.23.2-1 Downloading dependency 215 of 220: dwz:amd64=0.16-2 Downloading dependency 216 of 220: libgfortran5:amd64=15.2.0-10 Downloading dependency 217 of 220: python3-pytest:amd64=8.4.2-1 Downloading dependency 218 of 220: ncurses-bin:amd64=6.5+20251123-1 Downloading dependency 219 of 220: python3-pluggy:amd64=1.6.0-1 Downloading dependency 220 of 220: sysvinit-utils:amd64=3.15-6 env --chdir=/srv/rebuilderd/tmp/rebuilderdTJddFc/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1764974841 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildqCPl9Z/debrebuild.sbuildrc.BOQUZGHsQA4a sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --binNMU-changelog= macs (3.0.2-2+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild with Python 3.14 as supported -- all / amd64 / i386 Build Daemon (x86-conova-01) Fri, 05 Dec 2025 22:47:21 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildqCPl9Z/debrebuild.tar.bEwBmpqL00H3 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=macs-3.0.2 /srv/rebuilderd/tmp/rebuilderdTJddFc/inputs/macs_3.0.2-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on osuosl43-amd64.novalocal +==============================================================================+ | macs 3.0.2-2+b1 (amd64) Fri, 26 Dec 2025 14:24:55 +0000 | +==============================================================================+ Package: macs Version: 3.0.2-2+b1 Source Version: 3.0.2-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildqCPl9Z/debrebuild.tar.bEwBmpqL00H3 to /srv/rebuilderd/tmp/tmp.sbuild.L6oCLfEmOP... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 26 Dec 2025 14:25:02 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdTJddFc/inputs/macs_3.0.2-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdTJddFc/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 26 Dec 2025 14:25:03 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-QT0JCR/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 26 Dec 2025 14:25:07 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Fri, 26 Dec 2025 14:25:08 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) amd64 (x86_64) Toolchain package versions: binutils_2.45.50.20251201-1 dpkg-dev_1.22.21 g++-15_15.2.0-10 gcc-15_15.2.0-10 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-10 libstdc++6_15.2.0-10 linux-libc-dev_6.17.10-1 Package versions: autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 bc_1.07.1-4 binutils_2.45.50.20251201-1 binutils-common_2.45.50.20251201-1 binutils-x86-64-linux-gnu_2.45.50.20251201-1 bsdextrautils_2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-10 cpp-15-x86-64-linux-gnu_15.2.0-10 cpp-x86-64-linux-gnu_4:15.2.0-4 cython3_3.1.6+dfsg-2+b1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debianutils_5.23.2 dh-autoreconf_21 dh-python_6.20251204.1 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-10 g++-15-x86-64-linux-gnu_15.2.0-10 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-10 gcc-15-base_15.2.0-10 gcc-15-x86-64-linux-gnu_15.2.0-10 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_15.2.0-10 libatomic1_15.2.0-10 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.45.50.20251201-1 libblas3_3.12.1-7 libblkid1_2.41.2-4 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b2 libcap2_1:2.75-10+b2 libcc1-0_15.2.0-10 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45.50.20251201-1 libctf0_2.45.50.20251201-1 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.282 libdebhelper-perl_13.28 libdpkg-perl_1.22.21 libelf1t64_0.194-1 libexpat1_2.7.3-1 libexpat1-dev_2.7.3-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-10 libgcc-s1_15.2.0-10 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgfortran5_15.2.0-10 libgmp10_2:6.3.0+dfsg-5 libgomp1_15.2.0-10 libgprofng0_2.45.50.20251201-1 libhwasan0_15.2.0-10 libisl23_0.27-1 libitm1_15.2.0-10 libjansson4_2.14-2+b3 libjs-sphinxdoc_8.2.3-10 liblapack3_3.12.1-7 liblocale-gettext-perl_1.07-7+b1 liblsan0_15.2.0-10 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20251123-1 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-7 libpipeline1_1.5.8-2 libproc2-0_2:4.0.4-9 libpython3-all-dev_3.13.9-2 libpython3-dev_3.13.9-2 libpython3-stdlib_3.13.9-2 libpython3.13_3.13.9-1 libpython3.13-dev_3.13.9-1 libpython3.13-minimal_3.13.9-1 libpython3.13-stdlib_3.13.9-1 libpython3.14_3.14.0-5 libpython3.14-dev_3.14.0-5 libpython3.14-minimal_3.14.0-5 libpython3.14-stdlib_3.14.0-5 libqhull-r8.0_2020.2-7 libquadmath0_15.2.0-10 libreadline8t64_8.3-3 libseccomp2_2.6.0-2+b1 libselinux1_3.9-4+b1 libsframe2_2.45.50.20251201-1 libsimde-dev_0.8.2-3 libsmartcols1_2.41.2-4 libsqlite3-0_3.46.1-8 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-10 libstdc++6_15.2.0-10 libsystemd0_259~rc2-1 libtinfo6_6.5+20251123-1 libtool_2.5.4-7 libtsan2_15.2.0-10 libubsan1_15.2.0-10 libuchardet0_0.0.8-2 libudev1_259~rc2-1 libunistring5_1.3-2 libuuid1_2.41.2-4 libxml2-16_2.15.1+dfsg-2+b1 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.17.10-1 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_14.0.0 ncurses-base_6.5+20251123-1 ncurses-bin_6.5+20251123-1 netbase_6.5 openssl_3.5.4-1 openssl-provider-legacy_3.5.4-1 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 pybuild-plugin-pyproject_6.20251204.1 python3_3.13.9-2 python3-all_3.13.9-2 python3-all-dev_3.13.9-2 python3-autocommand_2.2.2-3 python3-build_1.2.2-4 python3-cykhash_2.0.0-3+b4 python3-decorator_5.2.1-2 python3-dev_3.13.9-2 python3-hmmlearn_0.3.2-2+b3 python3-inflect_7.5.0-1 python3-iniconfig_2.1.0-1 python3-installer_0.7.0+dfsg1-3 python3-jaraco.context_6.0.1-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-joblib_1.5.2-1 python3-minimal_3.13.9-2 python3-more-itertools_10.8.0-1 python3-numpy_1:2.3.5+ds-2+b1 python3-numpy-dev_1:2.3.5+ds-2+b1 python3-packaging_25.0-1 python3-pip_25.3+dfsg-1 python3-pkg-resources_78.1.1-0.1 python3-pluggy_1.6.0-1 python3-pygments_2.18.0+dfsg-2 python3-pyproject-hooks_1.2.0-1 python3-pytest_8.4.2-1 python3-scipy_1.16.3-2 python3-setuptools_78.1.1-0.1 python3-sklearn_1.7.2+dfsg-3 python3-sklearn-lib_1.7.2+dfsg-3+b2 python3-threadpoolctl_3.1.0-1 python3-typeguard_4.4.4-1 python3-typing-extensions_4.15.0-1 python3-wheel_0.46.1-2 python3-zipp_3.23.0-1 python3.13_3.13.9-1 python3.13-dev_3.13.9-1 python3.13-minimal_3.13.9-1 python3.14_3.14.0-5 python3.14-dev_3.14.0-5 python3.14-minimal_3.14.0-5 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.26 sysvinit-utils_3.15-6 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Fri, 26 Dec 2025 14:25:08 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 3.0.2-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc Package-List: macs deb science optional arch=any Checksums-Sha1: add8dce2a95862e95e94ada63a56f1035023163b 197484503 macs_3.0.2.orig.tar.gz 9a9ffd8e45bb719d88f6d1e38ad11ec7f3f3fb5d 1267996 macs_3.0.2-2.debian.tar.xz Checksums-Sha256: 33e877460f1b621ee85c78221b52d1e067b8f5aacdaf4d16bd887485bf636e08 197484503 macs_3.0.2.orig.tar.gz ca759f92e14f1c814d6a35a9a14ca21f41e662a07510dbca7e447d65bf476061 1267996 macs_3.0.2-2.debian.tar.xz Files: 2f1ec9ab99edddaf84958b65c305532e 197484503 macs_3.0.2.orig.tar.gz 5c2807358c8525971807a4e4f9c6bc80 1267996 macs_3.0.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmkrCEkRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBqMOBAAr8mjY0+hQR6afZDB9N6l1c/tbzEOvqQl 6aWPK9pzrvTrGsQF0mxOJSwv+y4K6EhRilO7mj4FxbXM6R1x044Xiuk64WqVegmB UGKaBWKbiciLITmGhiICaAihdIGYDkOefaRHHqcKsATt0WQIErFUXsOaHh2l0+ve my4KK+Oy/weohpGku4rjzZOMb2ykgTh7EczH4yEtAE97eDYdcNzdfqE/FXagGQY5 IM6+VJnEJaPc/hjPAtdNeP3q2UGCbFIOORcR7ElrlM1H0CFL8k+8e7nSeklOcRSE Od3s9E6upUDylxk9KOojNE4IUkWbxQlRpkBa8RN8AFml5GAg/he5xDxbXzJDEuJG 2gj8VJUxhoI7BtPKjy/VD9O2HzCv3i/s29LoOUtMk0vDLIYl6rd1ytFR5URaUwj0 IVWVziOz+j+Ax426R53pYc1mv0FyyGpLQEKN5fYincq35TTvpF2GCgW94QyQ2HEB /BvR696NWS8lOfPPSeYYu/XNGB2keKWzcqKKV04mEpOAE5zEKZCesLAq3lCI4dER Hw6w++IMIVEbhJZ9sUx+YJlSjjzqXLg4FkEsHqqS3D0IKaQSDX90vTB9WfK5B0fg 5pxgFLVizPsXactCBJtXBUvSpD7YnpZ0RjTfhGpCN457qhs8fyZH8ZpSm3fuAOBb R48zpUETLW0= =c3K0 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-2.dsc: unsupported subcommand dpkg-source: info: extracting macs in /build/reproducible-path/macs-3.0.2 dpkg-source: info: unpacking macs_3.0.2.orig.tar.gz dpkg-source: info: unpacking macs_3.0.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying keep_debug dpkg-source: info: applying simde.patch dpkg-source: info: applying long_is_not_defined.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 3.0.2-2+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1764974841 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 3.0.2-2+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/macs-3.0.2' rm -Rf test/macs3.0.2-2+b1* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/reproducible-path/macs-3.0.2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-3.0.2' for pyx in $(find MACS3/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild plugin_pyproject:131: Building wheel for python3.14 with "build" module I: pybuild base:317: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.14_MACS3 * Building wheel... Compiling MACS3/Signal/HMMR_EM.pyx because it changed. Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed. Compiling MACS3/Signal/HMMR_HMM.pyx because it changed. Compiling MACS3/Signal/Prob.pyx because it changed. Compiling MACS3/Signal/Region.pyx because it changed. Compiling MACS3/Signal/Pileup.pyx because it changed. Compiling MACS3/Signal/PileupV2.pyx because it changed. Compiling MACS3/Signal/PeakModel.pyx because it changed. Compiling MACS3/Signal/PeakDetect.pyx because it changed. Compiling MACS3/Signal/SignalProcessing.pyx because it changed. Compiling MACS3/Signal/FixWidthTrack.pyx because it changed. Compiling MACS3/Signal/PairedEndTrack.pyx because it changed. Compiling MACS3/Signal/BedGraph.pyx because it changed. Compiling MACS3/Signal/ScoreTrack.pyx because it changed. Compiling MACS3/Signal/CallPeakUnit.pyx because it changed. Compiling MACS3/Signal/VariantStat.pyx because it changed. Compiling MACS3/Signal/ReadAlignment.pyx because it changed. Compiling MACS3/Signal/RACollection.pyx because it changed. Compiling MACS3/Signal/UnitigRACollection.pyx because it changed. Compiling MACS3/Signal/PosReadsInfo.pyx because it changed. Compiling MACS3/Signal/PeakVariants.pyx because it changed. Compiling MACS3/IO/Parser.pyx because it changed. Compiling MACS3/IO/PeakIO.pyx because it changed. Compiling MACS3/IO/BedGraphIO.pyx because it changed. Compiling MACS3/IO/BAM.pyx because it changed. [ 1/25] Cythonizing MACS3/IO/BAM.pyx [ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx [ 3/25] Cythonizing MACS3/IO/Parser.pyx [ 4/25] Cythonizing MACS3/IO/PeakIO.pyx [ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx [ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx [ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx [ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx [ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx [10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx [11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx [12/25] Cythonizing MACS3/Signal/PeakDetect.pyx [13/25] Cythonizing MACS3/Signal/PeakModel.pyx [14/25] Cythonizing MACS3/Signal/PeakVariants.pyx [15/25] Cythonizing MACS3/Signal/Pileup.pyx [16/25] Cythonizing MACS3/Signal/PileupV2.pyx [17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx [18/25] Cythonizing MACS3/Signal/Prob.pyx [19/25] Cythonizing MACS3/Signal/RACollection.pyx [20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx [21/25] Cythonizing MACS3/Signal/Region.pyx [22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx [23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx [24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx [25/25] Cythonizing MACS3/Signal/VariantStat.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-314/MACS3 copying MACS3/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3 creating build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO creating build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal creating build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands creating build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-x86_64-cpython-314/MACS3/Signal x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.HMMR_Signal_Processing' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.HMMR_HMM' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.Prob' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Prob.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Prob.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Prob.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.Region' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Region.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Region.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Region.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.Pileup' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Pileup.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Pileup.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Pileup.o build/temp.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PileupV2' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PileupV2.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakModel' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PeakModel.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.BedGraph' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/BedGraph.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/VariantStat.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/RACollection.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/swalign.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/htab.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mag.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/misc.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rle.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rope.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/RACollection.o build/temp.linux-x86_64-cpython-314/MACS3/Signal/swalign.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bfc.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bseq.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bubble.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/htab.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/ksw.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/kthread.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mag.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/misc.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mrope.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rld0.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rle.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rope.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/unitig.o -L/usr/lib/x86_64-linux-gnu -lm -lz -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-x86_64-cpython-314/MACS3/IO x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/IO/Parser.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/Parser.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/Parser.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.PeakIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/PeakIO.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/PeakIO.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/PeakIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.BAM' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/IO/BAM.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/BAM.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/BAM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.14 copying and adjusting bin/macs3 -> build/scripts-3.14 changing mode of build/scripts-3.14/macs3 from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MACS3 copying build/lib.linux-x86_64-cpython-314/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO creating build/bdist.linux-x86_64/wheel/MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities creating build/bdist.linux-x86_64/wheel/MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands creating build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal running install_egg_info running egg_info creating MACS3.egg-info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt writing manifest file 'MACS3.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' Copying MACS3.egg-info to build/bdist.linux-x86_64/wheel/./MACS3-3.0.2.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts copying build/scripts-3.14/macs3 -> build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts changing mode of build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts/macs3 to 755 creating build/bdist.linux-x86_64/wheel/macs3-3.0.2.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.14_MACS3/.tmp-epzwxdna/macs3-3.0.2-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/diffpeak_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'macs3-3.0.2.data/scripts/macs3' adding 'macs3-3.0.2.dist-info/licenses/LICENSE' adding 'macs3-3.0.2.dist-info/METADATA' adding 'macs3-3.0.2.dist-info/WHEEL' adding 'macs3-3.0.2.dist-info/top_level.txt' adding 'macs3-3.0.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built macs3-3.0.2-cp314-cp314-linux_x86_64.whl I: pybuild plugin_pyproject:155: Unpacking wheel built for python3.14 with "installer" module I: pybuild plugin_pyproject:131: Building wheel for python3.13 with "build" module I: pybuild base:317: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.13_MACS3 * Building wheel... /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/MACS3 copying MACS3/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3 creating build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO creating build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal creating build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands creating build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-x86_64-cpython-313/MACS3/Signal x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.HMMR_Signal_Processing' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.HMMR_HMM' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.Prob' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Prob.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Prob.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Prob.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.Region' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Region.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Region.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Region.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.Pileup' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Pileup.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Pileup.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Pileup.o build/temp.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PileupV2' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PileupV2.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakModel' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakModel.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.BedGraph' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/BedGraph.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/VariantStat.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/RACollection.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/swalign.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/htab.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mag.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/misc.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rle.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rope.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/RACollection.o build/temp.linux-x86_64-cpython-313/MACS3/Signal/swalign.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bfc.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bseq.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bubble.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/htab.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/ksw.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/kthread.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mag.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/misc.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mrope.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rld0.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rle.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rope.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/unitig.o -L/usr/lib/x86_64-linux-gnu -lm -lz -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-x86_64-cpython-313/MACS3/IO x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/IO/Parser.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/Parser.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/Parser.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.PeakIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/PeakIO.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/PeakIO.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/PeakIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.BAM' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/IO/BAM.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/BAM.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/BAM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting bin/macs3 -> build/scripts-3.13 changing mode of build/scripts-3.13/macs3 from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MACS3 copying build/lib.linux-x86_64-cpython-313/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO creating build/bdist.linux-x86_64/wheel/MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities creating build/bdist.linux-x86_64/wheel/MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands creating build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal running install_egg_info running egg_info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' Copying MACS3.egg-info to build/bdist.linux-x86_64/wheel/./MACS3-3.0.2.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts copying build/scripts-3.13/macs3 -> build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts changing mode of build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts/macs3 to 755 creating build/bdist.linux-x86_64/wheel/macs3-3.0.2.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.13_MACS3/.tmp-qjuq7wqw/macs3-3.0.2-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/diffpeak_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'macs3-3.0.2.data/scripts/macs3' adding 'macs3-3.0.2.dist-info/licenses/LICENSE' adding 'macs3-3.0.2.dist-info/METADATA' adding 'macs3-3.0.2.dist-info/WHEEL' adding 'macs3-3.0.2.dist-info/top_level.txt' adding 'macs3-3.0.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built macs3-3.0.2-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:155: Unpacking wheel built for python3.13 with "installer" module PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info \ --name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs3_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info --version-string="3.0.2" \ --include debian/macs3_${subcommand}-man-include \ "python3 bin/macs3 ${subcommand}" > \ debian/macs3_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-3.0.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-3.0.2' dh_auto_test I: pybuild base:317: cd /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.14_MACS3/build; python3.14 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.14.0, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.14_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 68 items test/test_BAMBAI.py ........... [ 16%] test/test_BedGraph.py ... [ 20%] test/test_FixWidthTrack.py .... [ 26%] test/test_HMMR_HMM.py ss [ 29%] test/test_HMMR_poisson.py .. [ 32%] test/test_PairedEndTrack.py .... [ 38%] test/test_Parser.py ... [ 42%] test/test_PeakIO.py . [ 44%] test/test_Pileup.py .......... [ 58%] test/test_Prob.py ................ [ 82%] test/test_Region.py ..... [ 89%] test/test_ScoreTrack.py .... [ 95%] test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] ======================== 65 passed, 3 skipped in 13.90s ======================== I: pybuild base:317: cd /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.13_MACS3/build; python3.13 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.13_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 68 items test/test_BAMBAI.py ........... [ 16%] test/test_BedGraph.py ... [ 20%] test/test_FixWidthTrack.py .... [ 26%] test/test_HMMR_HMM.py ss [ 29%] test/test_HMMR_poisson.py .. [ 32%] test/test_PairedEndTrack.py .... [ 38%] test/test_Parser.py ... [ 42%] test/test_PeakIO.py . [ 44%] test/test_Pileup.py .......... [ 58%] test/test_Prob.py ................ [ 82%] test/test_Region.py ..... [ 89%] test/test_ScoreTrack.py .... [ 95%] test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] ======================== 65 passed, 3 skipped in 13.61s ======================== cd test && for PY3VER in 3.14 3.13; do \ export PATH=/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_${PY3VER}_MACS3/scripts:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_${PY3VER}_MACS3/build \ && ./cmdlinetest macs3.0.2-2+b1-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 16. search for errors or warnings in log files checking ../temp/macs3.0.2-2+b1-3.14_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.14_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are the same! 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are the same! 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are the same! 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.11.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.11.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.12.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.12.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.13.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.13.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.15.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.15.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.16.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.16.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.16.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.17.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak ... success! Results are the same! 16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... success! Results are the same! 16.18.3 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... success! Results are the same! 16.18.4 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... success! Results are the same! 16.18.5 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... success! Results are the same! 16.18.6 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... success! Results are the same! 16.18.7 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... success! Results are the same! 16.18.8 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... success! Results are the same! 18. brief speed test CPU time (mm:ss): 00:01:07 Max mem (KB): 236708 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 16. search for errors or warnings in log files checking ../temp/macs3.0.2-2+b1-3.13_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.2-2+b1-3.13_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are the same! 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are the same! 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are the same! 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.11.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.11.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.12.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.12.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.13.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.13.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.15.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.15.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.16.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.16.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.16.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.17.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak ... success! Results are the same! 16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... success! Results are the same! 16.18.3 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... success! Results are the same! 16.18.4 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... success! Results are the same! 16.18.5 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... success! Results are the same! 16.18.6 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... success! Results are the same! 16.18.7 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... success! Results are the same! 16.18.8 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-2+b1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... success! Results are the same! 18. brief speed test CPU time (mm:ss): 00:01:09 Max mem (KB): 248268 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.2' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild I: pybuild plugin_pyproject:186: Copying package built for python3.14 to destdir I: pybuild plugin_pyproject:186: Copying package built for python3.13 to destdir dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/macs-3.0.2' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.2' dh_python3 -a -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/macs/usr/bin/macs3 dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_3.0.2-2+b1_amd64.deb'. dpkg-deb: building package 'macs' in '../macs_3.0.2-2+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../macs_3.0.2-2+b1_amd64.buildinfo dpkg-genchanges --build=any -O../macs_3.0.2-2+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-12-26T14:53:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 26 Dec 2025 14:53:04 +0000 | +------------------------------------------------------------------------------+ macs_3.0.2-2+b1_amd64.changes: ------------------------------ Format: 1.8 Date: Fri, 05 Dec 2025 22:47:21 +0000 Source: macs (3.0.2-2) Binary: macs macs-dbgsym Binary-Only: yes Architecture: amd64 Version: 3.0.2-2+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: all / amd64 / i386 Build Daemon (x86-conova-01) Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Changes: macs (3.0.2-2+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild with Python 3.14 as supported Checksums-Sha1: a647cd8f02a0ca57782fd188cb0ff179ad886cbc 24918168 macs-dbgsym_3.0.2-2+b1_amd64.deb c98cd34f0c9852dbdb8af6e4ebc9ad8286f2df7e 7617 macs_3.0.2-2+b1_amd64.buildinfo 4124c9350850db748790bc287a38195b7e4cec36 4220388 macs_3.0.2-2+b1_amd64.deb Checksums-Sha256: 651d9921c17d1dbed77c9df9b4a62d3ec859afd2975b43417f3bfc76cc44a1cd 24918168 macs-dbgsym_3.0.2-2+b1_amd64.deb 88b704b43b574a15cdc9efc5d357a3762e4a21a13f36ef13156de3a6184d897d 7617 macs_3.0.2-2+b1_amd64.buildinfo b04045885dcc8b2535ec996de7b0bb41afeb5fc2e23c9909128cb867ce5c7df1 4220388 macs_3.0.2-2+b1_amd64.deb Files: dee25b245638cff00a48cc18f5312a09 24918168 debug optional macs-dbgsym_3.0.2-2+b1_amd64.deb dafb3415902a577d6a70f6a3703a22c2 7617 science optional macs_3.0.2-2+b1_amd64.buildinfo 65f184281d5cbc968723754543853ae4 4220388 science optional macs_3.0.2-2+b1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 26 Dec 2025 14:53:05 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: macs (3.0.2-2) Binary: macs macs-dbgsym Architecture: amd64 Version: 3.0.2-2+b1 Binary-Only-Changes: macs (3.0.2-2+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild with Python 3.14 as supported . -- all / amd64 / i386 Build Daemon (x86-conova-01) Fri, 05 Dec 2025 22:47:21 +0000 Checksums-Md5: dee25b245638cff00a48cc18f5312a09 24918168 macs-dbgsym_3.0.2-2+b1_amd64.deb 65f184281d5cbc968723754543853ae4 4220388 macs_3.0.2-2+b1_amd64.deb Checksums-Sha1: a647cd8f02a0ca57782fd188cb0ff179ad886cbc 24918168 macs-dbgsym_3.0.2-2+b1_amd64.deb 4124c9350850db748790bc287a38195b7e4cec36 4220388 macs_3.0.2-2+b1_amd64.deb Checksums-Sha256: 651d9921c17d1dbed77c9df9b4a62d3ec859afd2975b43417f3bfc76cc44a1cd 24918168 macs-dbgsym_3.0.2-2+b1_amd64.deb b04045885dcc8b2535ec996de7b0bb41afeb5fc2e23c9909128cb867ce5c7df1 4220388 macs_3.0.2-2+b1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 26 Dec 2025 14:53:03 +0000 Build-Path: /build/reproducible-path/macs-3.0.2 Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), bc (= 1.07.1-4), binutils (= 2.45.50.20251201-1), binutils-common (= 2.45.50.20251201-1), binutils-x86-64-linux-gnu (= 2.45.50.20251201-1), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20250419), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-10), cpp-15-x86-64-linux-gnu (= 15.2.0-10), cpp-x86-64-linux-gnu (= 4:15.2.0-4), cython3 (= 3.1.6+dfsg-2+b1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-python (= 6.20251204.1), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-10), g++-15-x86-64-linux-gnu (= 15.2.0-10), g++-x86-64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-10), gcc-15-base (= 15.2.0-10), gcc-15-x86-64-linux-gnu (= 15.2.0-10), gcc-x86-64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), help2man (= 1.49.3), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-10), libatomic1 (= 15.2.0-10), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.45.50.20251201-1), libblas3 (= 3.12.1-7), libblkid1 (= 2.41.2-4), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b2), libcap2 (= 1:2.75-10+b2), libcc1-0 (= 15.2.0-10), libcrypt-dev (= 1:4.5.1-1), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45.50.20251201-1), libctf0 (= 2.45.50.20251201-1), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.282), libdebhelper-perl (= 13.28), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.194-1), libexpat1 (= 2.7.3-1), libexpat1-dev (= 2.7.3-1), libffi8 (= 3.5.2-2), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-10), libgcc-s1 (= 15.2.0-10), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgfortran5 (= 15.2.0-10), libgmp10 (= 2:6.3.0+dfsg-5), libgomp1 (= 15.2.0-10), libgprofng0 (= 2.45.50.20251201-1), libhwasan0 (= 15.2.0-10), libisl23 (= 0.27-1), libitm1 (= 15.2.0-10), libjansson4 (= 2.14-2+b3), libjs-sphinxdoc (= 8.2.3-10), liblapack3 (= 3.12.1-7), liblocale-gettext-perl (= 1.07-7+b1), liblsan0 (= 15.2.0-10), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncursesw6 (= 6.5+20251123-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2), libproc2-0 (= 2:4.0.4-9), libpython3-all-dev (= 3.13.9-2), libpython3-dev (= 3.13.9-2), libpython3-stdlib (= 3.13.9-2), libpython3.13 (= 3.13.9-1), libpython3.13-dev (= 3.13.9-1), libpython3.13-minimal (= 3.13.9-1), libpython3.13-stdlib (= 3.13.9-1), libpython3.14 (= 3.14.0-5), libpython3.14-dev (= 3.14.0-5), libpython3.14-minimal (= 3.14.0-5), libpython3.14-stdlib (= 3.14.0-5), libqhull-r8.0 (= 2020.2-7), libquadmath0 (= 15.2.0-10), libreadline8t64 (= 8.3-3), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsframe2 (= 2.45.50.20251201-1), libsimde-dev (= 0.8.2-3), libsmartcols1 (= 2.41.2-4), libsqlite3-0 (= 3.46.1-8), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-10), libstdc++6 (= 15.2.0-10), libsystemd0 (= 259~rc2-1), libtinfo6 (= 6.5+20251123-1), libtool (= 2.5.4-7), libtsan2 (= 15.2.0-10), libubsan1 (= 15.2.0-10), libuchardet0 (= 0.0.8-2), libudev1 (= 259~rc2-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libxml2-16 (= 2.15.1+dfsg-2+b1), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.17.10-1), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 14.0.0), ncurses-base (= 6.5+20251123-1), ncurses-bin (= 6.5+20251123-1), netbase (= 6.5), openssl (= 3.5.4-1), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-9), pybuild-plugin-pyproject (= 6.20251204.1), python3 (= 3.13.9-2), python3-all (= 3.13.9-2), python3-all-dev (= 3.13.9-2), python3-autocommand (= 2.2.2-3), python3-build (= 1.2.2-4), python3-cykhash (= 2.0.0-3+b4), python3-decorator (= 5.2.1-2), python3-dev (= 3.13.9-2), python3-hmmlearn (= 0.3.2-2+b3), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-1), python3-installer (= 0.7.0+dfsg1-3), python3-jaraco.context (= 6.0.1-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-joblib (= 1.5.2-1), python3-minimal (= 3.13.9-2), python3-more-itertools (= 10.8.0-1), python3-numpy (= 1:2.3.5+ds-2+b1), python3-numpy-dev (= 1:2.3.5+ds-2+b1), python3-packaging (= 25.0-1), python3-pip (= 25.3+dfsg-1), python3-pkg-resources (= 78.1.1-0.1), python3-pluggy (= 1.6.0-1), python3-pygments (= 2.18.0+dfsg-2), python3-pyproject-hooks (= 1.2.0-1), python3-pytest (= 8.4.2-1), python3-scipy (= 1.16.3-2), python3-setuptools (= 78.1.1-0.1), python3-sklearn (= 1.7.2+dfsg-3), python3-sklearn-lib (= 1.7.2+dfsg-3+b2), python3-threadpoolctl (= 3.1.0-1), python3-typeguard (= 4.4.4-1), python3-typing-extensions (= 4.15.0-1), python3-wheel (= 0.46.1-2), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.9-1), python3.13-dev (= 3.13.9-1), python3.13-minimal (= 3.13.9-1), python3.14 (= 3.14.0-5), python3.14-dev (= 3.14.0-5), python3.14-minimal (= 3.14.0-5), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-5), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1764974841" +------------------------------------------------------------------------------+ | Package contents Fri, 26 Dec 2025 14:53:05 +0000 | +------------------------------------------------------------------------------+ macs-dbgsym_3.0.2-2+b1_amd64.deb -------------------------------- new Debian package, version 2.0. size 24918168 bytes: control archive=2864 bytes. 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./usr/share/ drwxr-xr-x root/root 0 2025-12-05 22:47 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-12-05 22:47 ./usr/share/doc/macs-dbgsym -> macs macs_3.0.2-2+b1_amd64.deb ------------------------- new Debian package, version 2.0. size 4220388 bytes: control archive=3948 bytes. 1112 bytes, 19 lines control 10291 bytes, 102 lines md5sums 255 bytes, 12 lines * postinst #!/bin/sh 401 bytes, 12 lines * prerm #!/bin/sh Package: macs Source: macs (3.0.2-2) Version: 3.0.2-2+b1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 14904 Depends: python3-numpy2-abi0 | python3-numpy-abi9, python3 (<< 3.15), python3 (>= 3.13~), python3-cykhash, python3-hmmlearn, python3-numpy, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.38), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/taoliu/MACS/ Description: Model-based Analysis of ChIP-Seq on short reads sequencers MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. 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0 2025-12-05 22:47 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-12-05 22:47 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 195 2025-11-29 13:30 ./usr/share/lintian/overrides/macs drwxr-xr-x root/root 0 2025-12-05 22:47 ./usr/share/man/ drwxr-xr-x root/root 0 2025-12-05 22:47 ./usr/share/man/man1/ -rw-r--r-- root/root 898 2025-12-05 22:47 ./usr/share/man/man1/macs3.1.gz -rw-r--r-- root/root 1063 2025-12-05 22:47 ./usr/share/man/man1/macs3_bdgbroadcall.1.gz -rw-r--r-- root/root 1501 2025-12-05 22:47 ./usr/share/man/man1/macs3_bdgcmp.1.gz -rw-r--r-- root/root 1328 2025-12-05 22:47 ./usr/share/man/man1/macs3_bdgdiff.1.gz -rw-r--r-- root/root 1003 2025-12-05 22:47 ./usr/share/man/man1/macs3_bdgopt.1.gz -rw-r--r-- root/root 1512 2025-12-05 22:47 ./usr/share/man/man1/macs3_bdgpeakcall.1.gz -rw-r--r-- root/root 6113 2025-12-05 22:47 ./usr/share/man/man1/macs3_callpeak.1.gz -rw-r--r-- root/root 881 2025-12-05 22:47 ./usr/share/man/man1/macs3_cmbreps.1.gz -rw-r--r-- root/root 2046 2025-12-05 22:47 ./usr/share/man/man1/macs3_filterdup.1.gz -rw-r--r-- root/root 1717 2025-12-05 22:47 ./usr/share/man/man1/macs3_pileup.1.gz -rw-r--r-- root/root 1867 2025-12-05 22:47 ./usr/share/man/man1/macs3_predictd.1.gz -rw-r--r-- root/root 1595 2025-12-05 22:47 ./usr/share/man/man1/macs3_randsample.1.gz -rw-r--r-- root/root 1361 2025-12-05 22:47 ./usr/share/man/man1/macs3_refinepeak.1.gz +------------------------------------------------------------------------------+ | Post Build Fri, 26 Dec 2025 14:53:06 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 26 Dec 2025 14:53:06 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 26 Dec 2025 14:53:09 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 2939120 Build-Time: 1668 Distribution: unstable Host Architecture: amd64 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdTJddFc/inputs/macs_3.0.2-2.dsc Machine Architecture: amd64 Package: macs Package-Time: 1688 Source-Version: 3.0.2-2 Space: 2939120 Status: successful Version: 3.0.2-2+b1 -------------------------------------------------------------------------------- Finished at 2025-12-26T14:53:03Z Build needed 00:28:08, 2939120k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdTJddFc/out checking macs-dbgsym_3.0.2-2+b1_amd64.deb: size differs for macs-dbgsym_3.0.2-2+b1_amd64.deb