=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdit0Fyb/inputs/macs_3.0.2-3_amd64.buildinfo Source: macs Version: 3.0.2-3 rebuilderd-worker node: osuosl44-amd64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 06 Mar 2026 12:33:30 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [137 kB] Get:7 https://deb.debian.org/debian sid InRelease [187 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [137 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [105 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [2,464 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [156 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [8,308 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [10.5 kB] Get:20 https://deb.debian.org/debian sid/main Sources [11.4 MB] Get:21 https://deb.debian.org/debian experimental/main Sources [444 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,572 B] Fetched 34.3 MB in 4s (9,594 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.2-3.dsc' macs_3.0.2-3.dsc 1807 SHA256:faba8326de7358bb1ee88fa0ec9e4f7ba9502ee24ff48f9c4d12e46747826d0b 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.2.orig.tar.gz' macs_3.0.2.orig.tar.gz 197484503 SHA256:33e877460f1b621ee85c78221b52d1e067b8f5aacdaf4d16bd887485bf636e08 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.2-3.debian.tar.xz' macs_3.0.2-3.debian.tar.xz 1268004 SHA256:8dc8389a7091127607d6805fb142c3985c9d128597e37d280b9ca334165bbae4 33e877460f1b621ee85c78221b52d1e067b8f5aacdaf4d16bd887485bf636e08 macs_3.0.2.orig.tar.gz 8dc8389a7091127607d6805fb142c3985c9d128597e37d280b9ca334165bbae4 macs_3.0.2-3.debian.tar.xz faba8326de7358bb1ee88fa0ec9e4f7ba9502ee24ff48f9c4d12e46747826d0b macs_3.0.2-3.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 06 Mar 2026 12:33:42 +0000 | +------------------------------------------------------------------------------+ Rebuilding macs=3.0.2-3 in /srv/rebuilderd/tmp/rebuilderdit0Fyb/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdit0Fyb/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdit0Fyb/inputs/macs_3.0.2-3_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdit0Fyb/inputs/macs_3.0.2-3_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/macs-3.0.2 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [187 kB] Get:2 http://snapshot.debian.org/archive/debian/20260302T143911Z forky InRelease [137 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [10.3 MB] Get:4 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 Packages [9588 kB] Fetched 20.2 MB in 2s (12.1 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260302T143911Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpq6qu4cyt/libmagic1t64_5.46-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [7487 kB] Fetched 7487 kB in 0s (92.2 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.3.5+ds-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp0lx6vr9a/python3-numpy_2.3.5+ds-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Fetched 918 kB in 0s (75.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0gsy2dvb/libsqlite3-0_3.46.1-9+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20260223 [158 kB] Fetched 158 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3pv3zc88/ca-certificates_20260223_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 0s (1204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2c96f0us/python3-decorator_5.2.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9+b1 [883 kB] Fetched 883 kB in 0s (73.7 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpb6sg13nj/procps_4.0.4-9+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 patch amd64 2.8-2 [134 kB] Fetched 134 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmk3voh5t/patch_2.8-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bc amd64 1.07.1-4 [103 kB] Fetched 103 kB in 0s (1181 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbs0hxv2/bc_1.07.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Fetched 181 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphk9e29a9/libreadline8t64_8.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Fetched 500 kB in 0s (6107 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaie3oor7/libsimde-dev_0.8.4~rc3-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 15.2.0-14 [736 kB] Fetched 736 kB in 0s (61.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyn8iz3sn/libstdc++6_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-2 [7540 B] Fetched 7540 B in 0s (427 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkeqm91ae/python3-iniconfig_2.1.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-5 [5324 B] Fetched 5324 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp7o_qk9mk/cpp-x86-64-linux-gnu_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-5 [1436 B] Fetched 1436 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp2hdkun33/gcc-x86-64-linux-gnu_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.9-3 [10.8 kB] Fetched 10.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuj0tmo3b/libpython3-dev_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bash amd64 5.3-2 [1561 kB] Fetched 1561 kB in 0s (95.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe94qeu2l/bash_5.3-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.3.2-3 [32.7 kB] Fetched 32.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuy71x6q8/libacl1_2.3.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Fetched 21.2 kB in 0s (631 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvr7ultzy/python3-threadpoolctl_3.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Fetched 245 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp45reslix/gettext-base_0.23.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc6 amd64 2.42-13 [1814 kB] Fetched 1814 kB in 0s (99.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpymoedmak/libc6_2.42-13_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Fetched 1194 kB in 0s (88.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphuwulcou/groff-base_1.23.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-dev-bin amd64 2.42-13 [61.5 kB] Fetched 61.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamqqsa1f/libc-dev-bin_2.42-13_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b1 [561 kB] Fetched 561 kB in 0s (53.6 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpcw8wwn_m/libgmp10_6.3.0+dfsg-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7x5gd5ec/gzip_1.13-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.12-1 [5298 kB] Fetched 5298 kB in 0s (157 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxxhgur_r/libpython3.13-dev_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.5.5-1 [2449 kB] Fetched 2449 kB in 0s (95.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpef2n6cl_/libssl3t64_3.5.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14 [72.9 kB] Fetched 72.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfsyupyjf/base-files_14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-12 [27.9 kB] Fetched 27.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp14th48a8/libjs-sphinxdoc_8.2.3-12_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit1 amd64 1:4.1.2-1+b1 [60.2 kB] Fetched 60.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpmibgtl2y/libaudit1_4.1.2-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Fetched 641 kB in 0s (58.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc8o1vekb/libxml2-16_2.15.1+dfsg-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:15.2.0-5 [5160 B] Fetched 5160 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp9p0u91sb/gcc_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.46-1+b1 [298 kB] Fetched 298 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgf4pn_ta/libpcre2-8-0_10.46-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-sklearn-lib amd64 1.8.0+dfsg-3 [4192 kB] Fetched 4192 kB in 0s (39.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyh4i_va7/python3-sklearn-lib_1.8.0+dfsg-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-14 [12.1 MB] Fetched 12.1 MB in 0s (156 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoauv3ais/cpp-15-x86-64-linux-gnu_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11 [710 kB] Fetched 710 kB in 0s (58.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpne70xezn/libdb5.3t64_5.3.28+dfsg2-11_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-5+b1 [179 kB] Fetched 179 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfbgaxrs/libpam-modules_1.7.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2+b1 [466 kB] Fetched 466 kB in 0s (43.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnwss1pq2/libunistring5_1.3-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcrypt1 amd64 1:4.5.1-1 [98.0 kB] Fetched 98.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpfh3gpsbf/libcrypt1_4.5.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-5+b1 [70.4 kB] Fetched 70.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxrjgeda/libpam0g_1.7.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.9-3 [1068 B] Fetched 1068 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi814w34h/python3-all-dev_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgcc-15-dev amd64 15.2.0-14 [2718 kB] Fetched 2718 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqinntzlh/libgcc-15-dev_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.14-dev amd64 3.14.3-1 [5433 kB] Fetched 5433 kB in 1s (8025 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp77ob207v/libpython3.14-dev_3.14.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.14-stdlib amd64 3.14.3-1 [2263 kB] Fetched 2263 kB in 0s (7349 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqr4ly66c/libpython3.14-stdlib_3.14.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Fetched 68.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0jl0bpb/libuchardet0_0.0.8-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.4-1 [116 kB] Fetched 116 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd7f6lnay/libexpat1_2.7.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.42-13 [1123 kB] Fetched 1123 kB in 0s (82.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2g1vmsxo/libc-gconv-modules-extra_2.42-13_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-cykhash amd64 2.0.0-3+b4 [666 kB] Fetched 666 kB in 0s (21.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89s789ii/python3-cykhash_2.0.0-3+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-bin amd64 2.42-13 [644 kB] Fetched 644 kB in 0s (54.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzor3_w7e/libc-bin_2.42-13_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Fetched 26.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfz84hwg9/libffi8_3.5.2-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b1 [66.1 kB] Fetched 66.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp2ee8reke/libproc2-0_4.0.4-9+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.2-2 [706 kB] Fetched 706 kB in 0s (62.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7uktgos4/xz-utils_5.8.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-5+b1 [49.8 kB] Fetched 49.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8oot_f_i/libpam-modules-bin_1.7.0-5+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 dpkg-dev all 1.23.5 [1318 kB] Fetched 1318 kB in 0s (86.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ejf_f1j/dpkg-dev_1.23.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Fetched 43.8 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.46-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpzv5yaq3n/file_5.46-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (60.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf59m1jzj/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (1105 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7r4f3xzz/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libasan8 amd64 15.2.0-14 [2779 kB] Fetched 2779 kB in 0s (128 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_pp_1isu/libasan8_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7+b1 [2550 kB] Fetched 2550 kB in 0s (124 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnb_xe3cj/liblapack3_3.12.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 linux-libc-dev all 6.18.15-1 [1964 kB] Fetched 1964 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1qg8gw8u/linux-libc-dev_6.18.15-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxg39gjjf/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7+b1 [209 kB] Fetched 209 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvfw3n6vs/libblas3_3.12.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-15 amd64 15.2.0-14 [1276 B] Fetched 1276 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf9t0trnn/cpp-15_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15-base amd64 15.2.0-14 [55.0 kB] Fetched 55.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8ff_0kr/gcc-15-base_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-sklearn all 1.8.0+dfsg-3 [2652 kB] Fetched 2652 kB in 0s (34.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe3u5akk_/python3-sklearn_1.8.0+dfsg-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphmd85sdk/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (68.2 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmp4lr5afo8/automake_1.18.1-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjansson4 amd64 2.14-2+b4 [40.1 kB] Fetched 40.1 kB in 0s (3938 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjvebzu2p/libjansson4_2.14-2+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.41.3-4 [212 kB] Fetched 212 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptmdvo9ps/libmount1_2.41.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Fetched 332 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplx6zmlme/m4_1.4.21-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.23.2 [92.4 kB] Fetched 92.4 kB in 0s (8059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgh1gpct1/debianutils_5.23.2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.5-1 [1500 kB] Fetched 1500 kB in 0s (63.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxv3erbo/openssl_3.5.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.31 [932 kB] Fetched 932 kB in 0s (47.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_02x1sp_/debhelper_13.31_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 libctf-nobfd0 amd64 2.46-2 [160 kB] Fetched 160 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmndcr3kh/libctf-nobfd0_2.46-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 binutils-x86-64-linux-gnu amd64 2.46-2 [1058 kB] Fetched 1058 kB in 0s (70.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt21d1i6x/binutils-x86-64-linux-gnu_2.46-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.3-2 [27.5 kB] Fetched 27.5 kB in 0s (1063 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeakrr94w/python3-wheel_0.46.3-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl amd64 5.40.1-7 [267 kB] Fetched 267 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl4sixgw9/perl_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:15.2.0-5 [1344 B] Fetched 1344 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpn0du_7nj/g++_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.4-1 [169 kB] Fetched 169 kB in 0s (6585 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3c66329k/libexpat1-dev_2.7.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp191bcor_/hostname_3.25_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-14 [862 kB] Fetched 862 kB in 0s (67.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8burbvsv/libgfortran5_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6i2n3wwo/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.9-3 [1072 B] Fetched 1072 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppu1feqmh/libpython3-all-dev_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libstdc++-15-dev amd64 15.2.0-14 [2446 kB] Fetched 2446 kB in 0s (110 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3xj5fj4a/libstdc++-15-dev_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.3-4 [98.9 kB] Fetched 98.9 kB in 0s (8983 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89m_qfy5/bsdextrautils_2.41.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.10-1 [3142 kB] Fetched 3142 kB in 0s (128 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrgwrggc/coreutils_9.10-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (23.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2gkw0mam/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Fetched 2267 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpukg57vfs/python3.13-minimal_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt2lym9_p/debconf_1.5.92_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pip all 26.0.1+dfsg-1 [1390 kB] Fetched 1390 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3wcdwwm5/python3-pip_26.0.1+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 7.20260125 [13.0 kB] Fetched 13.0 kB in 0s (503 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2uuvjdv1/pybuild-plugin-pyproject_7.20260125_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-3 [89.0 kB] Fetched 89.0 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp7xfiqii0/zlib1g_1.3.dfsg+really1.3.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6+b1 [40.4 kB] Fetched 40.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdsrnsekd/libbz2-1.0_1.0.8-6+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.27-1+b1 [663 kB] Fetched 663 kB in 0s (50.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtda0n0w/libisl23_0.27-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-6 [494 kB] Fetched 494 kB in 0s (36.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphc30vmd_/autoconf_2.72-6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.12-1 [2187 kB] Fetched 2187 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcm61z5gj/libpython3.13_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Fetched 443 kB in 0s (36.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt0cs8cgx/grep_3.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Fetched 338 kB in 0s (30.5 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpbhplnyy7/libmagic-mgc_5.46-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Fetched 1687 kB in 0s (89.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8vhealvf/gettext_0.23.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcap-ng0 amd64 0.9.1-1 [17.4 kB] Fetched 17.4 kB in 0s (1705 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6skqi6ae/libcap-ng0_0.9.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Fetched 10.5 kB in 0s (1023 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpusg2fcs2/libpython3-stdlib_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB] Fetched 540 kB in 0s (40.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsvfe1ty8/libtool_2.5.4-9_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpm88e56fg/libaudit-common_4.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 binutils amd64 2.46-2 [282 kB] Fetched 282 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ejiw5zv/binutils_2.46-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.1.6+dfsg-2+b1 [3313 kB] Fetched 3313 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2q9nnbkk/cython3_3.1.6+dfsg-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-14 [23.4 MB] Fetched 23.4 MB in 0s (164 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb8mcilti/gcc-15-x86-64-linux-gnu_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Fetched 198 kB in 0s (6864 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6pwhto3o/help2man_1.49.3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 libdpkg-perl all 1.23.5 [668 kB] Fetched 668 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7vfr1tip/libdpkg-perl_1.23.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Fetched 108 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp71mjyvv0/dwz_0.16-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhwasan0 amd64 15.2.0-14 [1538 kB] Fetched 1538 kB in 0s (94.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8wfr3tnq/libhwasan0_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzgl0wkak/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libperl5.40 amd64 5.40.1-7 [4317 kB] Fetched 4317 kB in 0s (122 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6zktkm49/libperl5.40_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9utwsm0t/dh-autoreconf_22_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Fetched 866 kB in 0s (66.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdw96bgi/libpython3.13-minimal_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxd4w_1n9/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (121 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ed2e2dn/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libatomic1 amd64 15.2.0-14 [9536 B] Fetched 9536 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqo6z14hk/libatomic1_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libitm1 amd64 15.2.0-14 [26.5 kB] Fetched 26.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4dyhybm0/libitm1_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmu9l9tpf/python3-minimal_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 2.41.3-4 [174 kB] Fetched 174 kB in 0s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoykab5cg/libblkid1_2.41.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq445wi6q/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgomp1 amd64 15.2.0-14 [140 kB] Fetched 140 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphchn8_8m/libgomp1_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-python all 7.20260125 [119 kB] Fetched 119 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7el2dk6w/dh-python_7.20260125_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.10.0-3 [700 kB] Fetched 700 kB in 0s (54.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01zfvp0g/findutils_4.10.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblsan0 amd64 15.2.0-14 [1249 kB] Fetched 1249 kB in 0s (77.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy9b52joe/liblsan0_15.2.0-14_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 libgprofng0 amd64 2.46-2 [820 kB] Fetched 820 kB in 0s (62.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_g62adbj/libgprofng0_2.46-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-14 [13.2 MB] Fetched 13.2 MB in 0s (178 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw7zuwd1v/g++-15-x86-64-linux-gnu_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc6-dev amd64 2.42-13 [2016 kB] Fetched 2016 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph0g261ja/libc6-dev_2.42-13_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Fetched 8184 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcjid96k5/python3-jaraco.context_6.0.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Fetched 54.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgs8x957/base-passwd_3.6.8_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libseccomp2 amd64 2.6.0-2+b1 [52.2 kB] Fetched 52.2 kB in 0s (5135 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmyt_kj9d/libseccomp2_2.6.0-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.16.3-4 [18.6 MB] Fetched 18.6 MB in 0s (47.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwhq5ufli/python3-scipy_1.16.3-4_amd64.deb' Downloading dependency 1 of 219: libmagic1t64:amd64=1:5.46-5+b1 Downloading dependency 2 of 219: python3-numpy:amd64=1:2.3.5+ds-3 Downloading dependency 3 of 219: libsqlite3-0:amd64=3.46.1-9+b1 Downloading dependency 4 of 219: ca-certificates:amd64=20260223 Downloading dependency 5 of 219: python3-decorator:amd64=5.2.1-2 Downloading dependency 6 of 219: procps:amd64=2:4.0.4-9+b1 Downloading dependency 7 of 219: patch:amd64=2.8-2 Downloading dependency 8 of 219: bc:amd64=1.07.1-4 Downloading dependency 9 of 219: libreadline8t64:amd64=8.3-4 Downloading dependency 10 of 219: libsimde-dev:amd64=0.8.4~rc3-5 Downloading dependency 11 of 219: libstdc++6:amd64=15.2.0-14 Downloading dependency 12 of 219: python3-iniconfig:amd64=2.1.0-2 Downloading dependency 13 of 219: cpp-x86-64-linux-gnu:amd64=4:15.2.0-5 Downloading dependency 14 of 219: gcc-x86-64-linux-gnu:amd64=4:15.2.0-5 Downloading dependency 15 of 219: libpython3-dev:amd64=3.13.9-3 Downloading dependency 16 of 219: bash:amd64=5.3-2 Downloading dependency 17 of 219: libacl1:amd64=2.3.2-3 Downloading dependency 18 of 219: 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dependency 98 of 219: gettext:amd64=0.23.2-1 Downloading dependency 99 of 219: libcap-ng0:amd64=0.9.1-1 Downloading dependency 100 of 219: libpython3-stdlib:amd64=3.13.9-3 Downloading dependency 101 of 219: libtool:amd64=2.5.4-9 Downloading dependency 102 of 219: libaudit-common:amd64=1:4.1.2-1 Downloading dependency 103 of 219: binutils:amd64=2.46-2 Downloading dependency 104 of 219: cython3:amd64=3.1.6+dfsg-2+b1 Downloading dependency 105 of 219: gcc-15-x86-64-linux-gnu:amd64=15.2.0-14 Downloading dependency 106 of 219: help2man:amd64=1.49.3 Downloading dependency 107 of 219: libdpkg-perl:amd64=1.23.5 Downloading dependency 108 of 219: dwz:amd64=0.16-2 Downloading dependency 109 of 219: libhwasan0:amd64=15.2.0-14 Downloading dependency 110 of 219: python3-zipp:amd64=3.23.0-1 Downloading dependency 111 of 219: libperl5.40:amd64=5.40.1-7 Downloading dependency 112 of 219: dh-autoreconf:amd64=22 Downloading dependency 113 of 219: libpython3.13-minimal:amd64=3.13.12-1 Downloading dependency 114 of 219: ncurses-base:amd64=6.6+20251231-1 Downloading dependency 115 of 219: perl-modules-5.40:amd64=5.40.1-7 Downloading dependency 116 of 219: libatomic1:amd64=15.2.0-14 Downloading dependency 117 of 219: libitm1:amd64=15.2.0-14 Downloading dependency 118 of 219: python3-minimal:amd64=3.13.9-3 Downloading dependency 119 of 219: libblkid1:amd64=2.41.3-4 Downloading dependency 120 of 219: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 121 of 219: libgomp1:amd64=15.2.0-14 Downloading dependency 122 of 219: dh-python:amd64=7.20260125 Downloading dependency 123 of 219: findutils:amd64=4.10.0-3 Downloading dependency 124 of 219: liblsan0:amd64=15.2.0-14 Downloading dependency 125 of 219: libgprofng0:amd64=2.46-2 Downloading dependency 126 of 219: g++-15-x86-64-linux-gnu:amd64=15.2.0-14 Downloading dependency 127 of 219: libc6-dev:amd64=2.42-13 Downloading dependency 128 of 219: python3-jaraco.context:amd64=6.0.1-2 Downloading dependency 129 of 219: base-passwd:amd64=3.6.8 Downloading dependency 130 of 219: libseccomp2:amd64=2.6.0-2+b1 Downloading dependency 131 of 219: python3-scipy:amd64=1.16.3-4 Downloading dependency 132 of 219: libsmartcols1:amd64=2.41.3-4Get:1 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 2.41.3-4 [145 kB] Fetched 145 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph22nu29u/libsmartcols1_2.41.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Fetched 1469 kB in 0s (90.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa8nt6wmk/man-db_2.13.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.9-3 [26.0 kB] Fetched 26.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5yp4yds3/python3-dev_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.31 [75.7 kB] Fetched 75.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplvpdr8ly/libdebhelper-perl_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (5949 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2cwpg2st/autotools-dev_20240727.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 diffutils amd64 1:3.12-1 [405 kB] Fetched 405 kB in 0s (34.0 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp2xuz_17l/diffutils_3.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libudev1 amd64 260~rc2-1 [132 kB] Fetched 132 kB in 0s (12.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgjrvccj4/libudev1_260~rc2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.2-2 [327 kB] Fetched 327 kB in 0s (29.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvpqtfxv/liblzma5_5.8.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.6+20251231-1 [445 kB] Fetched 445 kB in 0s (38.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxfxrg_t_/ncurses-bin_6.6+20251231-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3aa26waf/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphs2klqvy/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 make amd64 4.4.1-3 [463 kB] Fetched 463 kB in 0s (42.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7m6u0x7g/make_4.4.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-8 [250 kB] Fetched 250 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpniwry70i/libqhull-r8.0_2020.2-8_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 2.41.3-4 [1166 kB] Fetched 1166 kB in 0s (76.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg8gcy21l/util-linux_2.41.3-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 binutils-common amd64 2.46-2 [2635 kB] Fetched 2635 kB in 0s (117 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpoqs5y3/binutils-common_2.46-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl64x_bi_/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 dpkg amd64 1.23.5 [1527 kB] Fetched 1527 kB in 0s (82.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8cvzq71c/dpkg_1.23.5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-15 amd64 15.2.0-14 [26.1 kB] Fetched 26.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2xez5_rj/g++-15_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.5.2-4 [23.0 kB] Fetched 23.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp0bwkam8q/libattr1_2.5.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.9-3 [1048 B] Fetched 1048 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprt87jso7/python3-all_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-2 [37.2 kB] Fetched 37.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_g44u7cw/python3-typeguard_4.4.4-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-8 [15.2 kB] Fetched 15.2 kB in 0s (1071 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4v0j6e_/liblocale-gettext-perl_1.07-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 libbinutils amd64 2.46-2 [548 kB] Fetched 548 kB in 0s (50.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx2_cpadg/libbinutils_2.46-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.4.0-1 [38.8 kB] Fetched 38.8 kB in 0s (1264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtffyd7s/python3-build_1.4.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpio6eq_u_/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 2.41.3-4 [39.1 kB] Fetched 39.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpajm7pz3i/libuuid1_2.41.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15 amd64 15.2.0-14 [536 kB] Fetched 536 kB in 0s (51.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdjxpswuo/gcc-15_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1r43de6g/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.5.5-1 [311 kB] Fetched 311 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqhp0r1w4/openssl-provider-legacy_3.5.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:15.2.0-5 [1564 B] Fetched 1564 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmprz3kqv0z/cpp_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.12-1 [504 kB] Fetched 504 kB in 0s (47.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphc5xj4d9/python3.13-dev_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Fetched 98.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrlcsxd1/dash_0.5.12-12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1+b1 [53.1 kB] Fetched 53.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9m91760n/libgdbm-compat4t64_1.26-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1+b1 [78.9 kB] Fetched 78.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprvbp4gba/libgdbm6t64_1.26-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpary7if4f/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Fetched 11.7 kB in 0s (513 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxq8vx2dm/python3-pyproject-hooks_1.2.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpslkk3qby/python3_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-hmmlearn amd64 0.3.2-3 [144 kB] Fetched 144 kB in 0s (831 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeyuawbxi/python3-hmmlearn_0.3.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Fetched 13.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2aizhu32/python3-autocommand_2.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (21.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr6jirczc/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (5899 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj2_9dm6x/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Fetched 772 kB in 0s (50.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqlqa1_i9/autopoint_0.23.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libselinux1 amd64 3.9-4+b1 [86.1 kB] Fetched 86.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoi2kk_ru/libselinux1_3.9-4+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl-base amd64 5.40.1-7 [1679 kB] Fetched 1679 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpveag7dz_/perl-base_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdebconfclient0 amd64 0.282+b2 [11.2 kB] Fetched 11.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9m65xgwy/libdebconfclient0_0.282+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.14-minimal amd64 3.14.3-1 [897 kB] Fetched 897 kB in 0s (4382 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiovxbpgo/libpython3.14-minimal_3.14.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-2 [27.2 kB] Fetched 27.2 kB in 0s (125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzm9l9b4v/python3-pluggy_1.6.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxifz07h2/build-essential_12.12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libubsan1 amd64 15.2.0-14 [1108 kB] Fetched 1108 kB in 0s (67.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1qtj9zp_/libubsan1_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Fetched 185 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp91558rn0/libelf1t64_0.194-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd4ezeu8u/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6+b1 [41.0 kB] Fetched 41.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxbyg4ru/bzip2_1.0.8-6+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.5.2-1 [222 kB] Fetched 222 kB in 0s (5283 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp41mki6xm/python3-joblib_1.5.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcc1-0 amd64 15.2.0-14 [42.6 kB] Fetched 42.6 kB in 0s (4055 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1x65raov/libcc1-0_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Fetched 137 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnmj4zm1t/libncursesw6_6.6+20251231-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 libctf0 amd64 2.46-2 [92.2 kB] Fetched 92.2 kB in 0s (8716 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps9f446c0/libctf0_2.46-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 libsframe3 amd64 2.46-2 [84.6 kB] Fetched 84.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx3nq059a/libsframe3_2.46-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (19.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpse4q_uv7/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-2 [56.7 kB] Fetched 56.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0wrnqk8q/python3-packaging_25.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Fetched 18.6 kB in 0s (758 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp80opvgzv/python3-installer_0.7.0+dfsg1-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtsan2 amd64 15.2.0-14 [2491 kB] Fetched 2491 kB in 0s (118 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwc9rfzld/libtsan2_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt2_ynl94/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-3+b1 [308 kB] Fetched 308 kB in 0s (29.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnebyf8st/libzstd1_1.5.7+dfsg-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.14-dev amd64 3.14.3-1 [507 kB] Fetched 507 kB in 0s (2607 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8m5vu3sd/python3.14-dev_3.14.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.14-minimal amd64 3.14.3-1 [2406 kB] Fetched 2406 kB in 0s (22.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7us2p2nw/python3.14-minimal_3.14.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-3 [919 kB] Fetched 919 kB in 0s (51.4 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpb9k994es/zlib1g-dev_1.3.dfsg+really1.3.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsystemd0 amd64 260~rc2-1 [446 kB] Fetched 446 kB in 0s (41.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsh4amrvd/libsystemd0_260~rc2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.6+20251231-1 [354 kB] Fetched 354 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd0zbmnep/libtinfo6_6.6+20251231-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026a-1 [259 kB] Fetched 259 kB in 0s (19.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp84vzaolh/tzdata_2026a-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgcc-s1 amd64 15.2.0-14 [71.5 kB] Fetched 71.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpch49ffpy/libgcc-s1_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (32.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv3hq5pz6/sed_4.9-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.1.0-2+b2 [36.2 kB] Fetched 36.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3m8wpwg6/libmd0_1.1.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxaoqk79/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 15.2.0-14 [145 kB] Fetched 145 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6j3rm2b/libquadmath0_15.2.0-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.14 amd64 3.14.3-1 [836 kB] Fetched 836 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprzi695hz/python3.14_3.14.3-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260302T143911Z forky/main amd64 mawk amd64 1.3.4.20260129-1 [143 kB] Fetched 143 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfj_xsiwm/mawk_1.3.4.20260129-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 9.0.2-4 [273 kB] Fetched 273 kB in 0s (7536 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpggz883kn/python3-pytest_9.0.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.19.2+dfsg-1 [847 kB] Fetched 847 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2lep4loa/python3-pygments_2.19.2+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sysvinit-utils amd64 3.15-6 [35.0 kB] Fetched 35.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzor6ersr/sysvinit-utils_3.15-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-4 [817 kB] Fetched 817 kB in 0s (71.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2jrw2dps/tar_1.35+dfsg-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Fetched 1974 kB in 0s (97.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5a82pwc1/libpython3.13-stdlib_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [138 kB] Fetched 138 kB in 0s (5555 kB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpbdnfyp_v/python3-numpy-dev_2.3.5+ds-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Fetched 42.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmikfyf0q/libpipeline1_1.5.8-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.14 amd64 3.14.3-1 [2372 kB] Fetched 2372 kB in 0s (18.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpikadho6d/libpython3.14_3.14.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-5 [1200 B] Fetched 1200 B in 0s (0 B/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp8niumu49/g++-x86-64-linux-gnu_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-2+b1 [729 kB] Fetched 729 kB in 0s (54.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpttqcnowy/libmpfr6_4.2.2-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Fetched 776 kB in 0s (64.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv89feig7/python3.13_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-2+b1 [52.2 kB] Fetched 52.2 kB in 0s (5058 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7m8n78qs/libmpc3_1.3.1-2+b1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmplm_ut8tb/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.MJ_u6T3cKr as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.MJ_u6T3cKr 127.0.0.1 - - [06/Mar/2026 12:35:20] code 404, message File not found 127.0.0.1 - - [06/Mar/2026 12:35:20] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:36105 ./ InRelease 127.0.0.1 - - [06/Mar/2026 12:35:20] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:36105 ./ Release [462 B] 127.0.0.1 - - [06/Mar/2026 12:35:20] code 404, message File not found 127.0.0.1 - - [06/Mar/2026 12:35:20] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:36105 ./ Release.gpg 127.0.0.1 - - [06/Mar/2026 12:35:20] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:36105 ./ Packages [262 kB] Fetched 263 kB in 0s (14.8 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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127.0.0.1 - - [06/Mar/2026 12:35:54] "GET /./python3-pygments_2.19.2%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Mar/2026 12:35:54] "GET /./python3-pytest_9.0.2-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Mar/2026 12:35:54] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmplm_ut8tb/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.MJ_u6T3cKr Reading package lists... Building dependency tree... Reading state information... libmagic1t64 is already the newest version (1:5.46-5+b1). libmagic1t64 set to manually installed. python3-numpy is already the newest version (1:2.3.5+ds-3). python3-numpy set to manually installed. libsqlite3-0 is already the newest version (3.46.1-9+b1). libsqlite3-0 set to manually installed. ca-certificates is already the newest version (20260223). ca-certificates set to manually installed. python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. procps is already the newest version (2:4.0.4-9+b1). procps set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. bc is already the newest version (1.07.1-4). bc set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libsimde-dev is already the newest version (0.8.4~rc3-5). libsimde-dev set to manually installed. libstdc++6 is already the newest version (15.2.0-14). libstdc++6 set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:15.2.0-5). cpp-x86-64-linux-gnu set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:15.2.0-5). gcc-x86-64-linux-gnu set to manually installed. libpython3-dev is already the newest version (3.13.9-3). libpython3-dev set to manually installed. bash is already the newest version (5.3-2). libacl1 is already the newest version (2.3.2-3). python3-threadpoolctl is already the newest version (3.1.0-1). python3-threadpoolctl set to manually installed. gettext-base is already the newest version (0.23.2-1). gettext-base set to manually installed. libc6 is already the newest version (2.42-13). groff-base is already the newest version (1.23.0-10). groff-base set to manually installed. libc-dev-bin is already the newest version (2.42-13). libc-dev-bin set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b1). gzip is already the newest version (1.13-1). libpython3.13-dev is already the newest version (3.13.12-1). libpython3.13-dev set to manually installed. libssl3t64 is already the newest version (3.5.5-1). base-files is already the newest version (14). libjs-sphinxdoc is already the newest version (8.2.3-12). libjs-sphinxdoc set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). libxml2-16 is already the newest version (2.15.1+dfsg-2+b1). libxml2-16 set to manually installed. gcc is already the newest version (4:15.2.0-5). gcc set to manually installed. libpcre2-8-0 is already the newest version (10.46-1+b1). python3-sklearn-lib is already the newest version (1.8.0+dfsg-3). python3-sklearn-lib set to manually installed. cpp-15-x86-64-linux-gnu is already the newest version (15.2.0-14). cpp-15-x86-64-linux-gnu set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11). libpam-modules is already the newest version (1.7.0-5+b1). libunistring5 is already the newest version (1.3-2+b1). libunistring5 set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1). libpam0g is already the newest version (1.7.0-5+b1). python3-all-dev is already the newest version (3.13.9-3). python3-all-dev set to manually installed. libgcc-15-dev is already the newest version (15.2.0-14). libgcc-15-dev set to manually installed. libpython3.14-dev is already the newest version (3.14.3-1). libpython3.14-dev set to manually installed. libpython3.14-stdlib is already the newest version (3.14.3-1). libpython3.14-stdlib set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b1). libuchardet0 set to manually installed. libexpat1 is already the newest version (2.7.4-1). libexpat1 set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-13). python3-cykhash is already the newest version (2.0.0-3+b4). python3-cykhash set to manually installed. libc-bin is already the newest version (2.42-13). libffi8 is already the newest version (3.5.2-3+b1). libffi8 set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9+b1). libproc2-0 set to manually installed. xz-utils is already the newest version (5.8.2-2). xz-utils set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5+b1). dpkg-dev is already the newest version (1.23.5). dpkg-dev set to manually installed. file is already the newest version (1:5.46-5+b1). file set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. libasan8 is already the newest version (15.2.0-14). libasan8 set to manually installed. liblapack3 is already the newest version (3.12.1-7+b1). liblapack3 set to manually installed. linux-libc-dev is already the newest version (6.18.15-1). linux-libc-dev set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. libblas3 is already the newest version (3.12.1-7+b1). libblas3 set to manually installed. cpp-15 is already the newest version (15.2.0-14). cpp-15 set to manually installed. gcc-15-base is already the newest version (15.2.0-14). python3-sklearn is already the newest version (1.8.0+dfsg-3). python3-sklearn set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. automake is already the newest version (1:1.18.1-4). automake set to manually installed. libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. libmount1 is already the newest version (2.41.3-4). m4 is already the newest version (1.4.21-1). m4 set to manually installed. debianutils is already the newest version (5.23.2). openssl is already the newest version (3.5.5-1). openssl set to manually installed. debhelper is already the newest version (13.31). debhelper set to manually installed. libctf-nobfd0 is already the newest version (2.46-2). libctf-nobfd0 set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.46-2). binutils-x86-64-linux-gnu set to manually installed. python3-wheel is already the newest version (0.46.3-2). python3-wheel set to manually installed. perl is already the newest version (5.40.1-7). perl set to manually installed. g++ is already the newest version (4:15.2.0-5). g++ set to manually installed. libexpat1-dev is already the newest version (2.7.4-1). libexpat1-dev set to manually installed. hostname is already the newest version (3.25). libgfortran5 is already the newest version (15.2.0-14). libgfortran5 set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libpython3-all-dev is already the newest version (3.13.9-3). libpython3-all-dev set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-14). libstdc++-15-dev set to manually installed. bsdextrautils is already the newest version (2.41.3-4). bsdextrautils set to manually installed. coreutils is already the newest version (9.10-1). libpam-runtime is already the newest version (1.7.0-5). python3.13-minimal is already the newest version (3.13.12-1). python3.13-minimal set to manually installed. debconf is already the newest version (1.5.92). python3-pip is already the newest version (26.0.1+dfsg-1). python3-pip set to manually installed. pybuild-plugin-pyproject is already the newest version (7.20260125). pybuild-plugin-pyproject set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-3). libbz2-1.0 is already the newest version (1.0.8-6+b1). libisl23 is already the newest version (0.27-1+b1). libisl23 set to manually installed. autoconf is already the newest version (2.72-6). autoconf set to manually installed. libpython3.13 is already the newest version (3.13.12-1). libpython3.13 set to manually installed. grep is already the newest version (3.12-1). libmagic-mgc is already the newest version (1:5.46-5+b1). libmagic-mgc set to manually installed. gettext is already the newest version (0.23.2-1). gettext set to manually installed. libcap-ng0 is already the newest version (0.9.1-1). libpython3-stdlib is already the newest version (3.13.9-3). libpython3-stdlib set to manually installed. libtool is already the newest version (2.5.4-9). libtool set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). binutils is already the newest version (2.46-2). binutils set to manually installed. cython3 is already the newest version (3.1.6+dfsg-2+b1). cython3 set to manually installed. gcc-15-x86-64-linux-gnu is already the newest version (15.2.0-14). gcc-15-x86-64-linux-gnu set to manually installed. help2man is already the newest version (1.49.3). help2man set to manually installed. libdpkg-perl is already the newest version (1.23.5). libdpkg-perl set to manually installed. dwz is already the newest version (0.16-2). dwz set to manually installed. libhwasan0 is already the newest version (15.2.0-14). libhwasan0 set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. libperl5.40 is already the newest version (5.40.1-7). libperl5.40 set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libpython3.13-minimal is already the newest version (3.13.12-1). libpython3.13-minimal set to manually installed. ncurses-base is already the newest version (6.6+20251231-1). perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. libatomic1 is already the newest version (15.2.0-14). libatomic1 set to manually installed. libitm1 is already the newest version (15.2.0-14). libitm1 set to manually installed. python3-minimal is already the newest version (3.13.9-3). python3-minimal set to manually installed. libblkid1 is already the newest version (2.41.3-4). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libgomp1 is already the newest version (15.2.0-14). libgomp1 set to manually installed. dh-python is already the newest version (7.20260125). dh-python set to manually installed. findutils is already the newest version (4.10.0-3). liblsan0 is already the newest version (15.2.0-14). liblsan0 set to manually installed. libgprofng0 is already the newest version (2.46-2). libgprofng0 set to manually installed. g++-15-x86-64-linux-gnu is already the newest version (15.2.0-14). g++-15-x86-64-linux-gnu set to manually installed. libc6-dev is already the newest version (2.42-13). libc6-dev set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. base-passwd is already the newest version (3.6.8). libseccomp2 is already the newest version (2.6.0-2+b1). libseccomp2 set to manually installed. python3-scipy is already the newest version (1.16.3-4). python3-scipy set to manually installed. libsmartcols1 is already the newest version (2.41.3-4). man-db is already the newest version (2.13.1-1). man-db set to manually installed. python3-dev is already the newest version (3.13.9-3). python3-dev set to manually installed. libdebhelper-perl is already the newest version (13.31). libdebhelper-perl set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. diffutils is already the newest version (1:3.12-1). libudev1 is already the newest version (260~rc2-1). liblzma5 is already the newest version (5.8.2-2). ncurses-bin is already the newest version (6.6+20251231-1). python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. libqhull-r8.0 is already the newest version (2020.2-8). libqhull-r8.0 set to manually installed. util-linux is already the newest version (2.41.3-4). binutils-common is already the newest version (2.46-2). binutils-common set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. dpkg is already the newest version (1.23.5). g++-15 is already the newest version (15.2.0-14). g++-15 set to manually installed. libattr1 is already the newest version (1:2.5.2-4). python3-all is already the newest version (3.13.9-3). python3-all set to manually installed. python3-typeguard is already the newest version (4.4.4-2). python3-typeguard set to manually installed. liblocale-gettext-perl is already the newest version (1.07-8). liblocale-gettext-perl set to manually installed. libbinutils is already the newest version (2.46-2). libbinutils set to manually installed. python3-build is already the newest version (1.4.0-1). python3-build set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. libuuid1 is already the newest version (2.41.3-4). gcc-15 is already the newest version (15.2.0-14). gcc-15 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. openssl-provider-legacy is already the newest version (3.5.5-1). cpp is already the newest version (4:15.2.0-5). cpp set to manually installed. python3.13-dev is already the newest version (3.13.12-1). python3.13-dev set to manually installed. dash is already the newest version (0.5.12-12). libgdbm-compat4t64 is already the newest version (1.26-1+b1). libgdbm-compat4t64 set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b1). libgdbm6t64 set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. python3-pyproject-hooks is already the newest version (1.2.0-1). python3-pyproject-hooks set to manually installed. python3 is already the newest version (3.13.9-3). python3 set to manually installed. python3-hmmlearn is already the newest version (0.3.2-3). python3-hmmlearn set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. autopoint is already the newest version (0.23.2-1). autopoint set to manually installed. libselinux1 is already the newest version (3.9-4+b1). perl-base is already the newest version (5.40.1-7). libdebconfclient0 is already the newest version (0.282+b2). libpython3.14-minimal is already the newest version (3.14.3-1). libpython3.14-minimal set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libubsan1 is already the newest version (15.2.0-14). libubsan1 set to manually installed. libelf1t64 is already the newest version (0.194-1). libelf1t64 set to manually installed. python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. bzip2 is already the newest version (1.0.8-6+b1). bzip2 set to manually installed. python3-joblib is already the newest version (1.5.2-1). python3-joblib set to manually installed. libcc1-0 is already the newest version (15.2.0-14). libcc1-0 set to manually installed. libncursesw6 is already the newest version (6.6+20251231-1). libncursesw6 set to manually installed. libctf0 is already the newest version (2.46-2). libctf0 set to manually installed. libsframe3 is already the newest version (2.46-2). libsframe3 set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. python3-packaging is already the newest version (25.0-2). python3-packaging set to manually installed. python3-installer is already the newest version (0.7.0+dfsg1-3). python3-installer set to manually installed. libtsan2 is already the newest version (15.2.0-14). libtsan2 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-3+b1). python3.14-dev is already the newest version (3.14.3-1). python3.14-dev set to manually installed. python3.14-minimal is already the newest version (3.14.3-1). python3.14-minimal set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-3). zlib1g-dev set to manually installed. libsystemd0 is already the newest version (260~rc2-1). libtinfo6 is already the newest version (6.6+20251231-1). tzdata is already the newest version (2026a-1). tzdata set to manually installed. libgcc-s1 is already the newest version (15.2.0-14). sed is already the newest version (4.9-2). libmd0 is already the newest version (1.1.0-2+b2). init-system-helpers is already the newest version (1.69). libquadmath0 is already the newest version (15.2.0-14). libquadmath0 set to manually installed. python3.14 is already the newest version (3.14.3-1). python3.14 set to manually installed. mawk is already the newest version (1.3.4.20260129-1). python3-pytest is already the newest version (9.0.2-4). python3-pytest set to manually installed. python3-pygments is already the newest version (2.19.2+dfsg-1). python3-pygments set to manually installed. sysvinit-utils is already the newest version (3.15-6). tar is already the newest version (1.35+dfsg-4). libpython3.13-stdlib is already the newest version (3.13.12-1). libpython3.13-stdlib set to manually installed. python3-numpy-dev is already the newest version (1:2.3.5+ds-3). python3-numpy-dev set to manually installed. libpipeline1 is already the newest version (1.5.8-2). libpipeline1 set to manually installed. libpython3.14 is already the newest version (3.14.3-1). libpython3.14 set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:15.2.0-5). g++-x86-64-linux-gnu set to manually installed. libmpfr6 is already the newest version (4.2.2-2+b1). libmpfr6 set to manually installed. python3.13 is already the newest version (3.13.12-1). python3.13 set to manually installed. libmpc3 is already the newest version (1.3.1-2+b1). libmpc3 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.MJ_u6T3cKr (Reading database ... 24408 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.MJ_u6T3cKr I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.MJ_u6T3cKr I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.MJ_u6T3cKr... I: success in 165.6273 seconds Downloading dependency 133 of 219: man-db:amd64=2.13.1-1 Downloading dependency 134 of 219: python3-dev:amd64=3.13.9-3 Downloading dependency 135 of 219: libdebhelper-perl:amd64=13.31 Downloading dependency 136 of 219: autotools-dev:amd64=20240727.1 Downloading dependency 137 of 219: diffutils:amd64=1:3.12-1 Downloading dependency 138 of 219: libudev1:amd64=260~rc2-1 Downloading dependency 139 of 219: liblzma5:amd64=5.8.2-2 Downloading dependency 140 of 219: ncurses-bin:amd64=6.6+20251231-1 Downloading dependency 141 of 219: python3-inflect:amd64=7.5.0-1 Downloading dependency 142 of 219: python3-jaraco.text:amd64=4.0.0-1 Downloading dependency 143 of 219: make:amd64=4.4.1-3 Downloading dependency 144 of 219: libqhull-r8.0:amd64=2020.2-8 Downloading dependency 145 of 219: util-linux:amd64=2.41.3-4 Downloading dependency 146 of 219: binutils-common:amd64=2.46-2 Downloading dependency 147 of 219: dh-strip-nondeterminism:amd64=1.15.0-1 Downloading dependency 148 of 219: dpkg:amd64=1.23.5 Downloading dependency 149 of 219: g++-15:amd64=15.2.0-14 Downloading dependency 150 of 219: libattr1:amd64=1:2.5.2-4 Downloading dependency 151 of 219: python3-all:amd64=3.13.9-3 Downloading dependency 152 of 219: python3-typeguard:amd64=4.4.4-2 Downloading dependency 153 of 219: liblocale-gettext-perl:amd64=1.07-8 Downloading dependency 154 of 219: libbinutils:amd64=2.46-2 Downloading dependency 155 of 219: python3-build:amd64=1.4.0-1 Downloading dependency 156 of 219: python3-more-itertools:amd64=10.8.0-1 Downloading dependency 157 of 219: libuuid1:amd64=2.41.3-4 Downloading dependency 158 of 219: gcc-15:amd64=15.2.0-14 Downloading dependency 159 of 219: libfile-stripnondeterminism-perl:amd64=1.15.0-1 Downloading dependency 160 of 219: openssl-provider-legacy:amd64=3.5.5-1 Downloading dependency 161 of 219: cpp:amd64=4:15.2.0-5 Downloading dependency 162 of 219: python3.13-dev:amd64=3.13.12-1 Downloading dependency 163 of 219: dash:amd64=0.5.12-12 Downloading dependency 164 of 219: libgdbm-compat4t64:amd64=1.26-1+b1 Downloading dependency 165 of 219: libgdbm6t64:amd64=1.26-1+b1 Downloading dependency 166 of 219: readline-common:amd64=8.3-4 Downloading dependency 167 of 219: python3-pyproject-hooks:amd64=1.2.0-1 Downloading dependency 168 of 219: python3:amd64=3.13.9-3 Downloading dependency 169 of 219: python3-hmmlearn:amd64=0.3.2-3 Downloading dependency 170 of 219: python3-autocommand:amd64=2.2.2-4 Downloading dependency 171 of 219: po-debconf:amd64=1.0.22 Downloading dependency 172 of 219: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 173 of 219: autopoint:amd64=0.23.2-1 Downloading dependency 174 of 219: libselinux1:amd64=3.9-4+b1 Downloading dependency 175 of 219: perl-base:amd64=5.40.1-7 Downloading dependency 176 of 219: libdebconfclient0:amd64=0.282+b2 Downloading dependency 177 of 219: libpython3.14-minimal:amd64=3.14.3-1 Downloading dependency 178 of 219: python3-pluggy:amd64=1.6.0-2 Downloading dependency 179 of 219: build-essential:amd64=12.12 Downloading dependency 180 of 219: libubsan1:amd64=15.2.0-14 Downloading dependency 181 of 219: libelf1t64:amd64=0.194-1 Downloading dependency 182 of 219: python3-typing-extensions:amd64=4.15.0-2 Downloading dependency 183 of 219: bzip2:amd64=1.0.8-6+b1 Downloading dependency 184 of 219: python3-joblib:amd64=1.5.2-1 Downloading dependency 185 of 219: libcc1-0:amd64=15.2.0-14 Downloading dependency 186 of 219: libncursesw6:amd64=6.6+20251231-1 Downloading dependency 187 of 219: libctf0:amd64=2.46-2 Downloading dependency 188 of 219: libsframe3:amd64=2.46-2 Downloading dependency 189 of 219: python3-pkg-resources:amd64=78.1.1-0.1 Downloading dependency 190 of 219: python3-packaging:amd64=25.0-2 Downloading dependency 191 of 219: python3-installer:amd64=0.7.0+dfsg1-3 Downloading dependency 192 of 219: libtsan2:amd64=15.2.0-14 Downloading dependency 193 of 219: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 194 of 219: libzstd1:amd64=1.5.7+dfsg-3+b1 Downloading dependency 195 of 219: python3.14-dev:amd64=3.14.3-1 Downloading dependency 196 of 219: python3.14-minimal:amd64=3.14.3-1 Downloading dependency 197 of 219: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.1-3 Downloading dependency 198 of 219: libsystemd0:amd64=260~rc2-1 Downloading dependency 199 of 219: libtinfo6:amd64=6.6+20251231-1 Downloading dependency 200 of 219: tzdata:amd64=2026a-1 Downloading dependency 201 of 219: libgcc-s1:amd64=15.2.0-14 Downloading dependency 202 of 219: sed:amd64=4.9-2 Downloading dependency 203 of 219: libmd0:amd64=1.1.0-2+b2 Downloading dependency 204 of 219: init-system-helpers:amd64=1.69 Downloading dependency 205 of 219: libquadmath0:amd64=15.2.0-14 Downloading dependency 206 of 219: python3.14:amd64=3.14.3-1 Downloading dependency 207 of 219: mawk:amd64=1.3.4.20260129-1 Downloading dependency 208 of 219: python3-pytest:amd64=9.0.2-4 Downloading dependency 209 of 219: python3-pygments:amd64=2.19.2+dfsg-1 Downloading dependency 210 of 219: sysvinit-utils:amd64=3.15-6 Downloading dependency 211 of 219: tar:amd64=1.35+dfsg-4 Downloading dependency 212 of 219: libpython3.13-stdlib:amd64=3.13.12-1 Downloading dependency 213 of 219: python3-numpy-dev:amd64=1:2.3.5+ds-3 Downloading dependency 214 of 219: libpipeline1:amd64=1.5.8-2 Downloading dependency 215 of 219: libpython3.14:amd64=3.14.3-1 Downloading dependency 216 of 219: g++-x86-64-linux-gnu:amd64=4:15.2.0-5 Downloading dependency 217 of 219: libmpfr6:amd64=4.2.2-2+b1 Downloading dependency 218 of 219: python3.13:amd64=3.13.12-1 Downloading dependency 219 of 219: libmpc3:amd64=1.3.1-2+b1 env --chdir=/srv/rebuilderd/tmp/rebuilderdit0Fyb/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1772709900 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildtwmXzy/debrebuild.sbuildrc.2ctj8zCr8OdR sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildtwmXzy/debrebuild.tar.PuknuWDbUikR --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=macs-3.0.2 /srv/rebuilderd/tmp/rebuilderdit0Fyb/inputs/macs_3.0.2-3.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl44-amd64.novalocal +==============================================================================+ | macs 3.0.2-3 (amd64) Fri, 06 Mar 2026 12:38:06 +0000 | +==============================================================================+ Package: macs Version: 3.0.2-3 Source Version: 3.0.2-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildtwmXzy/debrebuild.tar.PuknuWDbUikR to /srv/rebuilderd/tmp/tmp.sbuild.BI4vNMCPk2... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 06 Mar 2026 12:38:12 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdit0Fyb/inputs/macs_3.0.2-3.dsc exists in /srv/rebuilderd/tmp/rebuilderdit0Fyb/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 06 Mar 2026 12:38:13 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-4pTX5D/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 06 Mar 2026 12:38:17 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Fri, 06 Mar 2026 12:38:17 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.73+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.73-1 (2026-02-17) amd64 (x86_64) Toolchain package versions: binutils_2.46-2 dpkg-dev_1.23.5 g++-15_15.2.0-14 gcc-15_15.2.0-14 libc6-dev_2.42-13 libstdc++-15-dev_15.2.0-14 libstdc++6_15.2.0-14 linux-libc-dev_6.18.15-1 Package versions: autoconf_2.72-6 automake_1:1.18.1-4 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-2 bc_1.07.1-4 binutils_2.46-2 binutils-common_2.46-2 binutils-x86-64-linux-gnu_2.46-2 bsdextrautils_2.41.3-4 build-essential_12.12 bzip2_1.0.8-6+b1 ca-certificates_20260223 coreutils_9.10-1 cpp_4:15.2.0-5 cpp-15_15.2.0-14 cpp-15-x86-64-linux-gnu_15.2.0-14 cpp-x86-64-linux-gnu_4:15.2.0-5 cython3_3.1.6+dfsg-2+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_13.31 debianutils_5.23.2 dh-autoreconf_22 dh-python_7.20260125 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.23.5 dpkg-dev_1.23.5 dwz_0.16-2 file_1:5.46-5+b1 findutils_4.10.0-3 g++_4:15.2.0-5 g++-15_15.2.0-14 g++-15-x86-64-linux-gnu_15.2.0-14 g++-x86-64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-15_15.2.0-14 gcc-15-base_15.2.0-14 gcc-15-x86-64-linux-gnu_15.2.0-14 gcc-x86-64-linux-gnu_4:15.2.0-5 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libarchive-zip-perl_1.68-1 libasan8_15.2.0-14 libatomic1_15.2.0-14 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-2 libblas3_3.12.1-7+b1 libblkid1_2.41.3-4 libbz2-1.0_1.0.8-6+b1 libc-bin_2.42-13 libc-dev-bin_2.42-13 libc-gconv-modules-extra_2.42-13 libc6_2.42-13 libc6-dev_2.42-13 libcap-ng0_0.9.1-1 libcc1-0_15.2.0-14 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.46-2 libctf0_2.46-2 libdb5.3t64_5.3.28+dfsg2-11 libdebconfclient0_0.282+b2 libdebhelper-perl_13.31 libdpkg-perl_1.23.5 libelf1t64_0.194-1 libexpat1_2.7.4-1 libexpat1-dev_2.7.4-1 libffi8_3.5.2-3+b1 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-14 libgcc-s1_15.2.0-14 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgfortran5_15.2.0-14 libgmp10_2:6.3.0+dfsg-5+b1 libgomp1_15.2.0-14 libgprofng0_2.46-2 libhwasan0_15.2.0-14 libisl23_0.27-1+b1 libitm1_15.2.0-14 libjansson4_2.14-2+b4 libjs-sphinxdoc_8.2.3-12 liblapack3_3.12.1-7+b1 liblocale-gettext-perl_1.07-8 liblsan0_15.2.0-14 liblzma5_5.8.2-2 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmd0_1.1.0-2+b2 libmount1_2.41.3-4 libmpc3_1.3.1-2+b1 libmpfr6_4.2.2-2+b1 libncursesw6_6.6+20251231-1 libpam-modules_1.7.0-5+b1 libpam-modules-bin_1.7.0-5+b1 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b1 libpcre2-8-0_10.46-1+b1 libperl5.40_5.40.1-7 libpipeline1_1.5.8-2 libproc2-0_2:4.0.4-9+b1 libpython3-all-dev_3.13.9-3 libpython3-dev_3.13.9-3 libpython3-stdlib_3.13.9-3 libpython3.13_3.13.12-1 libpython3.13-dev_3.13.12-1 libpython3.13-minimal_3.13.12-1 libpython3.13-stdlib_3.13.12-1 libpython3.14_3.14.3-1 libpython3.14-dev_3.14.3-1 libpython3.14-minimal_3.14.3-1 libpython3.14-stdlib_3.14.3-1 libqhull-r8.0_2020.2-8 libquadmath0_15.2.0-14 libreadline8t64_8.3-4 libseccomp2_2.6.0-2+b1 libselinux1_3.9-4+b1 libsframe3_2.46-2 libsimde-dev_0.8.4~rc3-5 libsmartcols1_2.41.3-4 libsqlite3-0_3.46.1-9+b1 libssl3t64_3.5.5-1 libstdc++-15-dev_15.2.0-14 libstdc++6_15.2.0-14 libsystemd0_260~rc2-1 libtinfo6_6.6+20251231-1 libtool_2.5.4-9 libtsan2_15.2.0-14 libubsan1_15.2.0-14 libuchardet0_0.0.8-2+b1 libudev1_260~rc2-1 libunistring5_1.3-2+b1 libuuid1_2.41.3-4 libxml2-16_2.15.1+dfsg-2+b1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.18.15-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260129-1 media-types_14.0.0 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 netbase_6.5 openssl_3.5.5-1 openssl-provider-legacy_3.5.5-1 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 procps_2:4.0.4-9+b1 pybuild-plugin-pyproject_7.20260125 python3_3.13.9-3 python3-all_3.13.9-3 python3-all-dev_3.13.9-3 python3-autocommand_2.2.2-4 python3-build_1.4.0-1 python3-cykhash_2.0.0-3+b4 python3-decorator_5.2.1-2 python3-dev_3.13.9-3 python3-hmmlearn_0.3.2-3 python3-inflect_7.5.0-1 python3-iniconfig_2.1.0-2 python3-installer_0.7.0+dfsg1-3 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-joblib_1.5.2-1 python3-minimal_3.13.9-3 python3-more-itertools_10.8.0-1 python3-numpy_1:2.3.5+ds-3 python3-numpy-dev_1:2.3.5+ds-3 python3-packaging_25.0-2 python3-pip_26.0.1+dfsg-1 python3-pkg-resources_78.1.1-0.1 python3-pluggy_1.6.0-2 python3-pygments_2.19.2+dfsg-1 python3-pyproject-hooks_1.2.0-1 python3-pytest_9.0.2-4 python3-scipy_1.16.3-4 python3-setuptools_78.1.1-0.1 python3-sklearn_1.8.0+dfsg-3 python3-sklearn-lib_1.8.0+dfsg-3 python3-threadpoolctl_3.1.0-1 python3-typeguard_4.4.4-2 python3-typing-extensions_4.15.0-2 python3-wheel_0.46.3-2 python3-zipp_3.23.0-1 python3.13_3.13.12-1 python3.13-dev_3.13.12-1 python3.13-minimal_3.13.12-1 python3.14_3.14.3-1 python3.14-dev_3.14.3-1 python3.14-minimal_3.14.3-1 readline-common_8.3-4 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.26 sysvinit-utils_3.15-6 tar_1.35+dfsg-4 tzdata_2026a-1 util-linux_2.41.3-4 xz-utils_5.8.2-2 zlib1g_1:1.3.dfsg+really1.3.1-3 zlib1g-dev_1:1.3.dfsg+really1.3.1-3 +------------------------------------------------------------------------------+ | Build Fri, 06 Mar 2026 12:38:17 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 3.0.2-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc Package-List: macs deb science optional arch=any Checksums-Sha1: add8dce2a95862e95e94ada63a56f1035023163b 197484503 macs_3.0.2.orig.tar.gz 92538b054c9c48129fc8fe2beb58f8f6f46c9a71 1268004 macs_3.0.2-3.debian.tar.xz Checksums-Sha256: 33e877460f1b621ee85c78221b52d1e067b8f5aacdaf4d16bd887485bf636e08 197484503 macs_3.0.2.orig.tar.gz 8dc8389a7091127607d6805fb142c3985c9d128597e37d280b9ca334165bbae4 1268004 macs_3.0.2-3.debian.tar.xz Files: 2f1ec9ab99edddaf84958b65c305532e 197484503 macs_3.0.2.orig.tar.gz 02ff1a84293db56d180d889a5e532072 1268004 macs_3.0.2-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmmpaPIACgkQQc5/C58b izIPmwf/d79bhV3gTmY6aOFLpoKMxAAPDJ1hevNj7TvIzAeHC8vCR82Y2dttuhjp issL5ecNLpszVXr1jylpOgEVKLI1x/OIbi9rQ4w8EE5t4M1LUEEqvUALyUjyeGwA WJaQMAfDFR6DsQpEGe4/X/Gdm1b0wvZI4D37Gxl3pULNlNF0CPjoSCIVGR2VnbKB OJpSlfsiWwho7+l78vM+eCmvf49v2rDAGXgLk/ERlaVx3u/cxwKmNFERiPOOOVUE ivLR3W7RBG6WMjPbU/htNRpcVDXJ/eRLrI1L1aVwfaU5212fcKDKcqdN5rTJCUPQ qGXKPJxDIKfr3y974+rRODtqdVFtlQ== =x9B0 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-3.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./macs_3.0.2-3.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting macs in /build/reproducible-path/macs-3.0.2 dpkg-source: info: unpacking macs_3.0.2.orig.tar.gz dpkg-source: info: unpacking macs_3.0.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying keep_debug dpkg-source: info: applying simde.patch dpkg-source: info: applying long_is_not_defined.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1772709900 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 3.0.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-3.0.2' for pyx in $(find MACS3/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:384: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.14_MACS3 * Building wheel... Compiling MACS3/Signal/HMMR_EM.pyx because it changed. Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed. Compiling MACS3/Signal/HMMR_HMM.pyx because it changed. Compiling MACS3/Signal/Prob.pyx because it changed. Compiling MACS3/Signal/Region.pyx because it changed. Compiling MACS3/Signal/Pileup.pyx because it changed. Compiling MACS3/Signal/PileupV2.pyx because it changed. Compiling MACS3/Signal/PeakModel.pyx because it changed. Compiling MACS3/Signal/PeakDetect.pyx because it changed. Compiling MACS3/Signal/SignalProcessing.pyx because it changed. Compiling MACS3/Signal/FixWidthTrack.pyx because it changed. Compiling MACS3/Signal/PairedEndTrack.pyx because it changed. Compiling MACS3/Signal/BedGraph.pyx because it changed. Compiling MACS3/Signal/ScoreTrack.pyx because it changed. Compiling MACS3/Signal/CallPeakUnit.pyx because it changed. Compiling MACS3/Signal/VariantStat.pyx because it changed. Compiling MACS3/Signal/ReadAlignment.pyx because it changed. Compiling MACS3/Signal/RACollection.pyx because it changed. Compiling MACS3/Signal/UnitigRACollection.pyx because it changed. Compiling MACS3/Signal/PosReadsInfo.pyx because it changed. Compiling MACS3/Signal/PeakVariants.pyx because it changed. Compiling MACS3/IO/Parser.pyx because it changed. Compiling MACS3/IO/PeakIO.pyx because it changed. Compiling MACS3/IO/BedGraphIO.pyx because it changed. Compiling MACS3/IO/BAM.pyx because it changed. [ 1/25] Cythonizing MACS3/IO/BAM.pyx [ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx [ 3/25] Cythonizing MACS3/IO/Parser.pyx [ 4/25] Cythonizing MACS3/IO/PeakIO.pyx [ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx [ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx [ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx [ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx [ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx [10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx [11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx [12/25] Cythonizing MACS3/Signal/PeakDetect.pyx [13/25] Cythonizing MACS3/Signal/PeakModel.pyx [14/25] Cythonizing MACS3/Signal/PeakVariants.pyx [15/25] Cythonizing MACS3/Signal/Pileup.pyx [16/25] Cythonizing MACS3/Signal/PileupV2.pyx [17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx [18/25] Cythonizing MACS3/Signal/Prob.pyx [19/25] Cythonizing MACS3/Signal/RACollection.pyx [20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx [21/25] Cythonizing MACS3/Signal/Region.pyx [22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx [23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx [24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx [25/25] Cythonizing MACS3/Signal/VariantStat.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-314/MACS3 copying MACS3/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3 creating build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO creating build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal creating build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands creating build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension building 'MACS3.Signal.HMMR_Signal_Processing' extension creating build/temp.linux-x86_64-cpython-314/MACS3/Signal building 'MACS3.Signal.HMMR_HMM' extension building 'MACS3.Signal.Prob' extension creating build/temp.linux-x86_64-cpython-314/MACS3/Signal building 'MACS3.Signal.Region' extension building 'MACS3.Signal.Pileup' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Pileup.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Pileup.o -w -O3 creating build/temp.linux-x86_64-cpython-314/MACS3/Signal x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Prob.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Prob.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Region.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Region.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PileupV2' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PileupV2.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakModel' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PeakModel.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Prob.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Region.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Pileup.o build/temp.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.BedGraph' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/BedGraph.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/VariantStat.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/RACollection.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/swalign.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/htab.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mag.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-x86_64-cpython-314/MACS3/IO x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/IO/Parser.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/Parser.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.PeakIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/PeakIO.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/PeakIO.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/misc.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rle.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.BAM' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/IO/BAM.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/BAM.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rope.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/RACollection.o build/temp.linux-x86_64-cpython-314/MACS3/Signal/swalign.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bfc.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bseq.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bubble.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/htab.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/ksw.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/kthread.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mag.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/misc.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mrope.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rld0.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rle.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rope.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/unitig.o -L/usr/lib/x86_64-linux-gnu -lm -lz -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/BAM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/Parser.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/PeakIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.14 copying and adjusting bin/macs3 -> build/scripts-3.14 changing mode of build/scripts-3.14/macs3 from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities creating build/bdist.linux-x86_64/wheel/MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO creating build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands running install_egg_info running egg_info creating MACS3.egg-info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt writing manifest file 'MACS3.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' Copying MACS3.egg-info to build/bdist.linux-x86_64/wheel/./MACS3-3.0.2.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts copying build/scripts-3.14/macs3 -> build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts changing mode of build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts/macs3 to 755 creating build/bdist.linux-x86_64/wheel/macs3-3.0.2.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.14_MACS3/.tmp-0n37y6e7/macs3-3.0.2-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/diffpeak_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'macs3-3.0.2.data/scripts/macs3' adding 'macs3-3.0.2.dist-info/licenses/LICENSE' adding 'macs3-3.0.2.dist-info/METADATA' adding 'macs3-3.0.2.dist-info/WHEEL' adding 'macs3-3.0.2.dist-info/top_level.txt' adding 'macs3-3.0.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built macs3-3.0.2-cp314-cp314-linux_x86_64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module I: pybuild plugin_pyproject:142: Building wheel for python3.13 with "build" module I: pybuild base:384: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.13_MACS3 * Building wheel... /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/MACS3 copying MACS3/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3 creating build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO creating build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal creating build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands creating build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-x86_64-cpython-313/MACS3/Signal building 'MACS3.Signal.HMMR_Signal_Processing' extension creating build/temp.linux-x86_64-cpython-313/MACS3/Signal building 'MACS3.Signal.Prob' extension building 'MACS3.Signal.HMMR_HMM' extension creating build/temp.linux-x86_64-cpython-313/MACS3/Signal creating build/temp.linux-x86_64-cpython-313/MACS3/Signal x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Prob.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Prob.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.o -w -O3 building 'MACS3.Signal.Region' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Region.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Region.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.o -w -O3 building 'MACS3.Signal.Pileup' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Pileup.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Pileup.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PileupV2' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PileupV2.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakModel' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakModel.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Region.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Prob.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Pileup.o build/temp.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.BedGraph' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/BedGraph.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/VariantStat.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/RACollection.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-x86_64-cpython-313/MACS3/IO x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/IO/Parser.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/Parser.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/swalign.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/htab.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mag.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.PeakIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/PeakIO.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/PeakIO.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/misc.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.o -w -O3 building 'MACS3.IO.BAM' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/IO/BAM.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/BAM.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rle.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rope.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/RACollection.o build/temp.linux-x86_64-cpython-313/MACS3/Signal/swalign.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bfc.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bseq.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bubble.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/htab.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/ksw.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/kthread.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mag.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/misc.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mrope.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rld0.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rle.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rope.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/unitig.o -L/usr/lib/x86_64-linux-gnu -lm -lz -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/BAM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/Parser.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/PeakIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting bin/macs3 -> build/scripts-3.13 changing mode of build/scripts-3.13/macs3 from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities creating build/bdist.linux-x86_64/wheel/MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO creating build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands running install_egg_info running egg_info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' Copying MACS3.egg-info to build/bdist.linux-x86_64/wheel/./MACS3-3.0.2.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts copying build/scripts-3.13/macs3 -> build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts changing mode of build/bdist.linux-x86_64/wheel/macs3-3.0.2.data/scripts/macs3 to 755 creating build/bdist.linux-x86_64/wheel/macs3-3.0.2.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.13_MACS3/.tmp-vr64d7yl/macs3-3.0.2-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/diffpeak_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'macs3-3.0.2.data/scripts/macs3' adding 'macs3-3.0.2.dist-info/licenses/LICENSE' adding 'macs3-3.0.2.dist-info/METADATA' adding 'macs3-3.0.2.dist-info/WHEEL' adding 'macs3-3.0.2.dist-info/top_level.txt' adding 'macs3-3.0.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built macs3-3.0.2-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.13 with "installer" module PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info \ --name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs3_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info --version-string="3.0.2" \ --include debian/macs3_${subcommand}-man-include \ "python3 bin/macs3 ${subcommand}" > \ debian/macs3_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-3.0.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-3.0.2' dh_auto_test I: pybuild base:384: cd /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.14_MACS3/build; python3.14 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.14.3, pytest-9.0.2, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.14_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 68 items test/test_BAMBAI.py ........... [ 16%] test/test_BedGraph.py ... [ 20%] test/test_FixWidthTrack.py .... [ 26%] test/test_HMMR_HMM.py ss [ 29%] test/test_HMMR_poisson.py .. [ 32%] test/test_PairedEndTrack.py .... [ 38%] test/test_Parser.py ... [ 42%] test/test_PeakIO.py . [ 44%] test/test_Pileup.py .......... [ 58%] test/test_Prob.py ................ [ 82%] test/test_Region.py ..... [ 89%] test/test_ScoreTrack.py .... [ 95%] test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] ======================== 65 passed, 3 skipped in 11.18s ======================== I: pybuild base:384: cd /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.13_MACS3/build; python3.13 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.13.12, pytest-9.0.2, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.13_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 68 items test/test_BAMBAI.py ........... [ 16%] test/test_BedGraph.py ... [ 20%] test/test_FixWidthTrack.py .... [ 26%] test/test_HMMR_HMM.py ss [ 29%] test/test_HMMR_poisson.py .. [ 32%] test/test_PairedEndTrack.py .... [ 38%] test/test_Parser.py ... [ 42%] test/test_PeakIO.py . [ 44%] test/test_Pileup.py .......... [ 58%] test/test_Prob.py ................ [ 82%] test/test_Region.py ..... [ 89%] test/test_ScoreTrack.py .... [ 95%] test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] ======================== 65 passed, 3 skipped in 11.01s ======================== cd test && for PY3VER in 3.14 3.13; do \ export PATH=/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_${PY3VER}_MACS3/scripts:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_${PY3VER}_MACS3/build \ && ./cmdlinetest macs3.0.2-3-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 16. search for errors or warnings in log files checking ../temp/macs3.0.2-3-3.14_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.2-3-3.14_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are the same! 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are the same! 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are the same! 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.11.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.11.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.12.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.12.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.2-3-3.14_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.13.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.13.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.2-3-3.14_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.15.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.15.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.2-3-3.14_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.16.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.2-3-3.14_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.16.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.2-3-3.14_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.16.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.2-3-3.14_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.17.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.2-3-3.14_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak ... success! Results are the same! 16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... success! Results are the same! 16.18.3 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... success! Results are the same! 16.18.4 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... success! Results are the same! 16.18.5 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... success! Results are the same! 16.18.6 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... success! Results are the same! 16.18.7 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... success! Results are the same! 16.18.8 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... success! Results are the same! 18. brief speed test CPU time (mm:ss): 00:00:54 Max mem (KB): 241936 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 16. search for errors or warnings in log files checking ../temp/macs3.0.2-3-3.13_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.2-3-3.13_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are the same! 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are the same! 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are the same! 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.11.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.11.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.12.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.12.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.2-3-3.13_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.13.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.13.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.2-3-3.13_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.15.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.15.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.2-3-3.13_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.16.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.2-3-3.13_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.16.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.2-3-3.13_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.16.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.2-3-3.13_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.17.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.2-3-3.13_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak ... success! Results are the same! 16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... success! Results are the same! 16.18.3 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... success! Results are the same! 16.18.4 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... success! Results are the same! 16.18.5 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... success! Results are the same! 16.18.6 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... success! Results are the same! 16.18.7 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... success! Results are the same! 16.18.8 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.2-3-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... success! Results are the same! 18. brief speed test CPU time (mm:ss): 00:00:53 Max mem (KB): 231668 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.2' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir I: pybuild plugin_pyproject:199: Copying package built for python3.13 to destdir dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/macs-3.0.2' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.2' dh_python3 -a -O--buildsystem=pybuild I: dh_python3 tools:128: replacing shebang in debian/macs/usr/bin/macs3 dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_3.0.2-3_amd64.deb'. dpkg-deb: building package 'macs' in '../macs_3.0.2-3_amd64.deb'. dpkg-genbuildinfo --build=any -O../macs_3.0.2-3_amd64.buildinfo dpkg-genchanges --build=any -O../macs_3.0.2-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-03-06T12:54:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 06 Mar 2026 12:54:29 +0000 | +------------------------------------------------------------------------------+ macs_3.0.2-3_amd64.changes: --------------------------- Format: 1.8 Date: Thu, 05 Mar 2026 12:25:00 +0100 Source: macs Binary: macs macs-dbgsym Architecture: amd64 Version: 3.0.2-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Closes: 1047612 Changes: macs (3.0.2-3) unstable; urgency=medium . * Team upload. * Fix clean target. Closes: #1047612. * Drop "Priority: optional" (default). * Update standards-version. * Simplify and fine-tune salsa-ci.yml. * Drop unused lintian overrides. Checksums-Sha1: 6d09c46e7b886cb2cb546f140039adeec614f1b3 24881420 macs-dbgsym_3.0.2-3_amd64.deb 0379bb44b05beb7872d81006a5e8e7373eff4042 7194 macs_3.0.2-3_amd64.buildinfo e1875ad41d122171f8f04cdb870afe1efbd7fea0 4210224 macs_3.0.2-3_amd64.deb Checksums-Sha256: 838586684c098bfb91a90912893a9b6c2dc653a66ad79802adfe113f512ee392 24881420 macs-dbgsym_3.0.2-3_amd64.deb 1a50813b0903a08d45bb7f8c3d567416816dc87e40098d20767e2722ada165c4 7194 macs_3.0.2-3_amd64.buildinfo 48afc0bdd215ceead5fc6051903db7d0fe88973c45782c35776c1864af684517 4210224 macs_3.0.2-3_amd64.deb Files: a916c9d5e0db18edbb38c1fc4f1a3362 24881420 debug optional macs-dbgsym_3.0.2-3_amd64.deb e3d620cd044f58be0e140834d2cb34b9 7194 science optional macs_3.0.2-3_amd64.buildinfo 9a5452e2c60ab17cb807d4bd01add658 4210224 science optional macs_3.0.2-3_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 06 Mar 2026 12:54:30 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: macs Binary: macs macs-dbgsym Architecture: amd64 Version: 3.0.2-3 Checksums-Md5: a916c9d5e0db18edbb38c1fc4f1a3362 24881420 macs-dbgsym_3.0.2-3_amd64.deb 9a5452e2c60ab17cb807d4bd01add658 4210224 macs_3.0.2-3_amd64.deb Checksums-Sha1: 6d09c46e7b886cb2cb546f140039adeec614f1b3 24881420 macs-dbgsym_3.0.2-3_amd64.deb e1875ad41d122171f8f04cdb870afe1efbd7fea0 4210224 macs_3.0.2-3_amd64.deb Checksums-Sha256: 838586684c098bfb91a90912893a9b6c2dc653a66ad79802adfe113f512ee392 24881420 macs-dbgsym_3.0.2-3_amd64.deb 48afc0bdd215ceead5fc6051903db7d0fe88973c45782c35776c1864af684517 4210224 macs_3.0.2-3_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 06 Mar 2026 12:54:28 +0000 Build-Path: /build/reproducible-path/macs-3.0.2 Installed-Build-Depends: autoconf (= 2.72-6), automake (= 1:1.18.1-4), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-2), bc (= 1.07.1-4), binutils (= 2.46-2), binutils-common (= 2.46-2), binutils-x86-64-linux-gnu (= 2.46-2), bsdextrautils (= 2.41.3-4), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), ca-certificates (= 20260223), coreutils (= 9.10-1), cpp (= 4:15.2.0-5), cpp-15 (= 15.2.0-14), cpp-15-x86-64-linux-gnu (= 15.2.0-14), cpp-x86-64-linux-gnu (= 4:15.2.0-5), cython3 (= 3.1.6+dfsg-2+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-python (= 7.20260125), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.5), dpkg-dev (= 1.23.5), dwz (= 0.16-2), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-14), g++-15-x86-64-linux-gnu (= 15.2.0-14), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-15 (= 15.2.0-14), gcc-15-base (= 15.2.0-14), gcc-15-x86-64-linux-gnu (= 15.2.0-14), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), help2man (= 1.49.3), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-14), libatomic1 (= 15.2.0-14), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-2), libblas3 (= 3.12.1-7+b1), libblkid1 (= 2.41.3-4), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-13), libc-dev-bin (= 2.42-13), libc-gconv-modules-extra (= 2.42-13), libc6 (= 2.42-13), libc6-dev (= 2.42-13), libcap-ng0 (= 0.9.1-1), libcc1-0 (= 15.2.0-14), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.46-2), libctf0 (= 2.46-2), libdb5.3t64 (= 5.3.28+dfsg2-11), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.31), libdpkg-perl (= 1.23.5), libelf1t64 (= 0.194-1), libexpat1 (= 2.7.4-1), libexpat1-dev (= 2.7.4-1), libffi8 (= 3.5.2-3+b1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-14), libgcc-s1 (= 15.2.0-14), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgfortran5 (= 15.2.0-14), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgomp1 (= 15.2.0-14), libgprofng0 (= 2.46-2), libhwasan0 (= 15.2.0-14), libisl23 (= 0.27-1+b1), libitm1 (= 15.2.0-14), libjansson4 (= 2.14-2+b4), libjs-sphinxdoc (= 8.2.3-12), liblapack3 (= 3.12.1-7+b1), liblocale-gettext-perl (= 1.07-8), liblsan0 (= 15.2.0-14), liblzma5 (= 5.8.2-2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.41.3-4), libmpc3 (= 1.3.1-2+b1), libmpfr6 (= 4.2.2-2+b1), libncursesw6 (= 6.6+20251231-1), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2), libproc2-0 (= 2:4.0.4-9+b1), libpython3-all-dev (= 3.13.9-3), libpython3-dev (= 3.13.9-3), libpython3-stdlib (= 3.13.9-3), libpython3.13 (= 3.13.12-1), libpython3.13-dev (= 3.13.12-1), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libpython3.14 (= 3.14.3-1), libpython3.14-dev (= 3.14.3-1), libpython3.14-minimal (= 3.14.3-1), libpython3.14-stdlib (= 3.14.3-1), libqhull-r8.0 (= 2020.2-8), libquadmath0 (= 15.2.0-14), libreadline8t64 (= 8.3-4), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsframe3 (= 2.46-2), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.41.3-4), libsqlite3-0 (= 3.46.1-9+b1), libssl3t64 (= 3.5.5-1), libstdc++-15-dev (= 15.2.0-14), libstdc++6 (= 15.2.0-14), libsystemd0 (= 260~rc2-1), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-14), libubsan1 (= 15.2.0-14), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 260~rc2-1), libunistring5 (= 1.3-2+b1), libuuid1 (= 2.41.3-4), libxml2-16 (= 2.15.1+dfsg-2+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.18.15-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260129-1), media-types (= 14.0.0), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), netbase (= 6.5), openssl (= 3.5.5-1), openssl-provider-legacy (= 3.5.5-1), patch (= 2.8-2), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b1), pybuild-plugin-pyproject (= 7.20260125), python3 (= 3.13.9-3), python3-all (= 3.13.9-3), python3-all-dev (= 3.13.9-3), python3-autocommand (= 2.2.2-4), python3-build (= 1.4.0-1), python3-cykhash (= 2.0.0-3+b4), python3-decorator (= 5.2.1-2), python3-dev (= 3.13.9-3), python3-hmmlearn (= 0.3.2-3), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-2), python3-installer (= 0.7.0+dfsg1-3), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-joblib (= 1.5.2-1), python3-minimal (= 3.13.9-3), python3-more-itertools (= 10.8.0-1), python3-numpy (= 1:2.3.5+ds-3), python3-numpy-dev (= 1:2.3.5+ds-3), python3-packaging (= 25.0-2), python3-pip (= 26.0.1+dfsg-1), python3-pkg-resources (= 78.1.1-0.1), python3-pluggy (= 1.6.0-2), python3-pygments (= 2.19.2+dfsg-1), python3-pyproject-hooks (= 1.2.0-1), python3-pytest (= 9.0.2-4), python3-scipy (= 1.16.3-4), python3-setuptools (= 78.1.1-0.1), python3-sklearn (= 1.8.0+dfsg-3), python3-sklearn-lib (= 1.8.0+dfsg-3), python3-threadpoolctl (= 3.1.0-1), python3-typeguard (= 4.4.4-2), python3-typing-extensions (= 4.15.0-2), python3-wheel (= 0.46.3-2), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.12-1), python3.13-dev (= 3.13.12-1), python3.13-minimal (= 3.13.12-1), python3.14 (= 3.14.3-1), python3.14-dev (= 3.14.3-1), python3.14-minimal (= 3.14.3-1), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-4), tzdata (= 2026a-1), util-linux (= 2.41.3-4), xz-utils (= 5.8.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-3) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1772709900" +------------------------------------------------------------------------------+ | Package contents Fri, 06 Mar 2026 12:54:30 +0000 | +------------------------------------------------------------------------------+ macs-dbgsym_3.0.2-3_amd64.deb ----------------------------- new Debian package, version 2.0. size 24881420 bytes: control archive=2864 bytes. 2369 bytes, 12 lines control 5381 bytes, 51 lines md5sums Package: macs-dbgsym Source: macs Version: 3.0.2-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 26095 Depends: macs (= 3.0.2-3) Section: debug Priority: optional Description: debug symbols for macs Build-Ids: 00acccb5109c4570811b5f00b39aa84d549aaad7 0b96c5645cca13d676b49e2ddd70e2d4e7a8b321 0bbaaa8b66dad88e58794a9427d411e4194f66c7 0e86c44a9a6cace349ee66c47e5d5ecf9ce41159 0f8252e4fadc3b58907ee0a60c90698de263c956 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---------------------- new Debian package, version 2.0. size 4210224 bytes: control archive=3872 bytes. 1086 bytes, 18 lines control 10145 bytes, 100 lines md5sums 263 bytes, 12 lines * postinst #!/bin/sh 401 bytes, 12 lines * prerm #!/bin/sh Package: macs Version: 3.0.2-3 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 14887 Depends: python3-numpy2-abi0 | python3-numpy-abi9, python3 (<< 3.15), python3 (>= 3.13~), python3-cykhash, python3-hmmlearn, python3-numpy, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.38), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/taoliu/MACS/ Description: Model-based Analysis of ChIP-Seq on short reads sequencers MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples. drwxr-xr-x root/root 0 2026-03-05 11:25 ./ drwxr-xr-x root/root 0 2026-03-05 11:25 ./usr/ drwxr-xr-x root/root 0 2026-03-05 11:25 ./usr/bin/ -rwxr-xr-x root/root 97279 2026-03-05 11:25 ./usr/bin/macs3 drwxr-xr-x root/root 0 2026-03-05 11:25 ./usr/lib/ drwxr-xr-x root/root 0 2026-03-05 11:25 ./usr/lib/python3/ drwxr-xr-x root/root 0 2026-03-05 11:25 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2026-03-05 11:25 ./usr/lib/python3/dist-packages/MACS3/ drwxr-xr-x root/root 0 2026-03-05 11:25 ./usr/lib/python3/dist-packages/MACS3/Commands/ -rw-r--r-- root/root 0 2026-03-05 11:25 ./usr/lib/python3/dist-packages/MACS3/Commands/__init__.py -rw-r--r-- root/root 1875 2026-03-05 11:25 ./usr/lib/python3/dist-packages/MACS3/Commands/bdgbroadcall_cmd.py -rw-r--r-- root/root 3453 2026-03-05 11:25 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./usr/share/man/man1/macs3_randsample.1.gz -rw-r--r-- root/root 1360 2026-03-05 11:25 ./usr/share/man/man1/macs3_refinepeak.1.gz +------------------------------------------------------------------------------+ | Post Build Fri, 06 Mar 2026 12:54:31 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 06 Mar 2026 12:54:31 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 06 Mar 2026 12:54:33 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 2938976 Build-Time: 966 Distribution: unstable Host Architecture: amd64 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdit0Fyb/inputs/macs_3.0.2-3.dsc Machine Architecture: amd64 Package: macs Package-Time: 982 Source-Version: 3.0.2-3 Space: 2938976 Status: successful Version: 3.0.2-3 -------------------------------------------------------------------------------- Finished at 2026-03-06T12:54:28Z Build needed 00:16:22, 2938976k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdit0Fyb/out checking macs-dbgsym_3.0.2-3_amd64.deb: size differs for macs-dbgsym_3.0.2-3_amd64.deb