=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderd5YCEOJ/inputs/r-base_4.5.3.20260410-1_amd64.buildinfo Source: r-base Version: 4.5.3.20260410-1 rebuilderd-worker node: osuosl43-amd64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 10 Apr 2026 15:04:19 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [137 kB] Get:7 https://deb.debian.org/debian sid InRelease [187 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [126 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [87.1 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [189 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [2,984 B] Get:17 https://deb.debian.org/debian forky/main Sources [10.8 MB] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [8,300 B] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [10.3 kB] Get:20 https://deb.debian.org/debian sid/main Sources [11.5 MB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [426 kB] Fetched 34.4 MB in 4s (8,234 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/r/r-base/r-base_4.5.3.20260410-1.dsc' r-base_4.5.3.20260410-1.dsc 2911 SHA256:c0e95e1471b28781c241673551c582e10c9e18b3ba043573b821a44fef31c351 'https://deb.debian.org/debian/pool/main/r/r-base/r-base_4.5.3.20260410.orig.tar.xz' r-base_4.5.3.20260410.orig.tar.xz 30875468 SHA256:377c2a536ff982fdc520b64b3a459e706c9cbdb8a2fc531461c841e92964594a 'https://deb.debian.org/debian/pool/main/r/r-base/r-base_4.5.3.20260410-1.debian.tar.xz' r-base_4.5.3.20260410-1.debian.tar.xz 101288 SHA256:92f9a7cb44d51779ca8137be751b4285fdabf5a1a8d9995e12f12c4b7f5290cb 377c2a536ff982fdc520b64b3a459e706c9cbdb8a2fc531461c841e92964594a r-base_4.5.3.20260410.orig.tar.xz 92f9a7cb44d51779ca8137be751b4285fdabf5a1a8d9995e12f12c4b7f5290cb r-base_4.5.3.20260410-1.debian.tar.xz c0e95e1471b28781c241673551c582e10c9e18b3ba043573b821a44fef31c351 r-base_4.5.3.20260410-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 10 Apr 2026 15:04:26 +0000 | +------------------------------------------------------------------------------+ Rebuilding r-base=4.5.3.20260410-1 in /srv/rebuilderd/tmp/rebuilderd5YCEOJ/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderd5YCEOJ/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderd5YCEOJ/inputs/r-base_4.5.3.20260410-1_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderd5YCEOJ/inputs/r-base_4.5.3.20260410-1_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/r-base-4.5.3.20260410 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [187 kB] Get:2 http://snapshot.debian.org/archive/debian/20260409T202916Z forky InRelease [137 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [10.4 MB] Get:4 http://snapshot.debian.org/archive/debian/20260409T202916Z forky/main amd64 Packages [9722 kB] Fetched 20.4 MB in 5s (3811 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260409T202916Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main amd64 dpkg-dev all 1.23.7 [1318 kB] Fetched 1318 kB in 0s (90.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9lz3jm3f/dpkg-dev_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gfortran-for-host amd64 4:15.2.0-5 [1092 B] Fetched 1092 B in 0s (54.9 kB/s) dpkg-name: info: moved 'gfortran-for-host_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp4zr36l2h/gfortran-for-host_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libubsan1 amd64 16-20260322-1 [1136 kB] Fetched 1136 kB in 0s (82.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphxpb50ut/libubsan1_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Fetched 75.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpscw9uddz/xdg-utils_1.2.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-bin amd64 2.42-14 [621 kB] Fetched 621 kB in 0s (56.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpko5ev_t6/libc-bin_2.42-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdatrie-dev amd64 0.2.14-1 [18.8 kB] Fetched 18.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptjwj_uv8/libdatrie-dev_0.2.14-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dbus-user-session amd64 1.16.2-4 [53.0 kB] Fetched 53.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcx0i94uj/dbus-user-session_1.16.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.2-2+b1 [37.7 kB] Fetched 37.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libsensors5_1%3a3.6.2-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp4gn6wu18/libsensors5_3.6.2-2+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260409T202916Z forky/main amd64 libcrypt1 amd64 1:4.5.1-1 [98.0 kB] Fetched 98.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpezfpv8zj/libcrypt1_4.5.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libunicode-linebreak-perl amd64 0.0.20190101-3 [95.7 kB] Fetched 95.7 kB in 0s (300 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn_ryhcpn/libunicode-linebreak-perl_0.0.20190101-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2 [27.9 kB] Fetched 27.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpqnod_a77/libxdmcp6_1.1.5-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuc2ls819/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dconf-service amd64 0.49.0-4 [34.0 kB] Fetched 34.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpav_h90kp/dconf-service_0.49.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8kesz5gd/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libselinux-dev amd64 3.10-1 [170 kB] Fetched 170 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfdv1hee3/libselinux-dev_3.10-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.57.1-1 [53.0 kB] Fetched 53.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp69ebbjid/libpangoft2-1.0-0_1.57.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.24.0-2+b2 [28.8 kB] Fetched 28.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl7ey736j/libwayland-client0_1.24.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Fetched 132 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppjvap3mx/libfontconfig1_2.17.1-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-2 [357 kB] Fetched 357 kB in 0s (35.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx26kokwp/libtiff6_4.7.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.13.1-1 [148 kB] Fetched 148 kB in 0s (13.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyf61aa33/libxkbcommon0_1.13.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc6-dev amd64 2.42-14 [1992 kB] Fetched 1992 kB in 0s (110 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpexuc5u4x/libc6-dev_2.42-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 librsvg2-2 amd64 2.62.1+dfsg-1 [1828 kB] Fetched 1828 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrf72hvx/librsvg2-2_2.62.1+dfsg-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Fetched 56.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5bcs5xd/fontconfig-config_2.17.1-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libyaml-tiny-perl all 1.76-1 [29.8 kB] Fetched 29.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01fv889e/libyaml-tiny-perl_1.76-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Fetched 191 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwcmtqbaf/fontconfig_2.17.1-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 16-20260322-1 [148 kB] Fetched 148 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp104rdt5b/libquadmath0_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.10-1 [3142 kB] Fetched 3142 kB in 0s (130 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx378kahl/coreutils_9.10-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Fetched 168 kB in 0s (0 B/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpo3zggdsy/libjpeg62-turbo_2.1.5-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6+b1 [41.0 kB] Fetched 41.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw4jwzj6_/bzip2_1.0.8-6+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-for-host amd64 4:15.2.0-5 [1060 B] Fetched 1060 B in 0s (39.7 kB/s) dpkg-name: info: moved 'gcc-for-host_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpmlvnl7fc/gcc-for-host_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj4gkd6kz/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.21.0-1 [194 kB] Fetched 194 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsho6f1c2/libngtcp2-dev_1.21.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bash amd64 5.3-2 [1561 kB] Fetched 1561 kB in 0s (99.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph0r45fs8/bash_5.3-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 glycin-thumbnailers amd64 2.0.8-1 [1053 kB] Fetched 1053 kB in 0s (76.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2yq34dpl/glycin-thumbnailers_2.0.8-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 default-jre-headless amd64 2:1.25-77 [3012 B] Fetched 3012 B in 0s (128 kB/s) dpkg-name: info: moved 'default-jre-headless_2%3a1.25-77_amd64.deb' to '/srv/rebuilderd/tmp/tmpwtd4t4uc/default-jre-headless_1.25-77_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjn4vdekb/sed_4.9-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tcl8.6 amd64 8.6.17+dfsg-1+b1 [121 kB] Fetched 121 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5orhxuek/tcl8.6_8.6.17+dfsg-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2+b1 [78.9 kB] Fetched 78.9 kB in 0s (920 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdx636y1y/libk5crypto3_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Fetched 918 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzprt4c6q/libsqlite3-0_3.46.1-9+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b1 [561 kB] Fetched 561 kB in 0s (48.8 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp5sveofg5/libgmp10_6.3.0+dfsg-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-18 [113 kB] Fetched 113 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn1hz3ayl/libavahi-common-data_0.8-18_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.22.1-2+b1 [14.0 kB] Fetched 14.0 kB in 0s (198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiupr7m1a/libkrb5-dev_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpixman-1-dev amd64 0.46.4-1+b1 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4owsn4p2/libpixman-1-dev_0.46.4-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gtk-update-icon-cache amd64 4.22.2+ds-2 [40.9 kB] Fetched 40.9 kB in 0s (1945 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4f5paczf/gtk-update-icon-cache_4.22.2+ds-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b3 [23.4 kB] Fetched 23.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libfontenc1_1%3a1.1.8-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmp0uqv5b06/libfontenc1_1.1.8-1+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxres1 amd64 2:1.2.1-2 [17.9 kB] Fetched 17.9 kB in 0s (608 kB/s) dpkg-name: info: moved 'libxres1_2%3a1.2.1-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpybcajz79/libxres1_1.2.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5+b2 [156 kB] Fetched 156 kB in 0s (3346 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpabyni1i5/libkpathsea6_2025.20250727.75242+ds-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20260223 [158 kB] Fetched 158 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp452mlhri/ca-certificates_20260223_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1+b1 [1053 kB] Fetched 1053 kB in 0s (79.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpixzv1xvz/libtcl8.6_8.6.17+dfsg-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.22.1-2+b1 [41.2 kB] Fetched 41.2 kB in 0s (523 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq22_yn1l/libkdb5-10t64_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.31 [932 kB] Fetched 932 kB in 0s (73.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm5dnedx7/debhelper_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsepol-dev amd64 3.10-1 [377 kB] Fetched 377 kB in 0s (37.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj9s5gtzr/libsepol-dev_3.10-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxkbfile1 amd64 1:1.1.0-1+b5 [76.7 kB] Fetched 76.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libxkbfile1_1%3a1.1.0-1+b5_amd64.deb' to '/srv/rebuilderd/tmp/tmp8q1vu0re/libxkbfile1_1.1.0-1+b5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libasan8 amd64 16-20260322-1 [2889 kB] Fetched 2889 kB in 0s (129 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppvejlb6j/libasan8_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgraphite2-dev amd64 1.3.14-13 [20.0 kB] Fetched 20.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw44vzcpe/libgraphite2-dev_1.3.14-13_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 16-20260322-1 [765 kB] Fetched 765 kB in 0s (63.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfbw79zhh/libstdc++6_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.46-3 [1058 kB] Fetched 1058 kB in 0s (80.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfbrxasts/binutils-x86-64-linux-gnu_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Fetched 15.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf8e9dgqb/libxml-namespacesupport-perl_1.12-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgfortran-15-dev amd64 15.2.0-16 [886 kB] Fetched 886 kB in 0s (71.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy5amh87f/libgfortran-15-dev_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7+b1 [5228 kB] Fetched 5228 kB in 0s (157 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp45ig1ehp/liblapack-dev_3.12.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-3+b1 [375 kB] Fetched 375 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1mpujkoq/libzstd-dev_1.5.7+dfsg-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Fetched 918 kB in 0s (73.8 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpwsh3f9jg/zlib1g-dev_1.3.dfsg+really1.3.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dconf-gsettings-backend amd64 0.49.0-4 [30.0 kB] Fetched 30.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa1lfz2sc/dconf-gsettings-backend_0.49.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsysprof-capture-4-dev amd64 50.0-1 [47.8 kB] Fetched 47.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpotmn9_zt/libsysprof-capture-4-dev_50.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-5 [36.0 kB] Fetched 36.0 kB in 0s (144 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjt899q84/libmpfi0_1.5.4+ds-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcursor1 amd64 1:1.2.3-1+b1 [40.3 kB] Fetched 40.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0zb2g7kn/libxcursor1_1.2.3-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfribidi-dev amd64 1.0.16-5 [66.3 kB] Fetched 66.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpond4zple/libfribidi-dev_1.0.16-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libitm1 amd64 16-20260322-1 [27.0 kB] Fetched 27.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplyj7t4xh/libitm1_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1+b1 [215 kB] Fetched 215 kB in 0s (0 B/s) dpkg-name: info: moved 'libxaw7_2%3a1.0.16-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpv76q9pl5/libxaw7_1.0.16-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Fetched 489 kB in 0s (47.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5m_hyl1v/fonts-dejavu-mono_2.37-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.3-1 [740 kB] Fetched 740 kB in 0s (63.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8b_deobh/xz-utils_5.8.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpxzrrz28y/libmagic1t64_5.46-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.13+ds-1 [369 kB] Fetched 369 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd85yctwa/libteckit0_2.5.13+ds-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1+b1 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0bz538r/libwebpmux3_1.5.0-0.1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b2 [122 kB] Fetched 122 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy73tea4t/libxcb-glx0_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 mawk amd64 1.3.4.20260302-1 [142 kB] Fetched 142 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpui1zkc7l/mawk_1.3.4.20260302-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxt-dev amd64 1:1.2.1-1.3+b1 [410 kB] Fetched 410 kB in 0s (39.3 MB/s) dpkg-name: info: moved 'libxt-dev_1%3a1.2.1-1.3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpc5hbvc6h/libxt-dev_1.2.1-1.3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Fetched 513 kB in 0s (47.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1jrr4htw/libharfbuzz0b_12.3.2-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.20 [29.7 kB] Fetched 29.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbj865lrn/tex-common_6.20_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Fetched 320 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqi9mf31c/libbrotli1_1.2.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.42-2 [213 kB] Fetched 213 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4_ib6y1i/libmount1_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblkid-dev amd64 2.42-2 [211 kB] Fetched 211 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc77xwe0s/libblkid-dev_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libstdc++-15-dev amd64 15.2.0-16 [2779 kB] Fetched 2779 kB in 0s (132 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsuqxtuj2/libstdc++-15-dev_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxss-dev amd64 1:1.2.3-1+b4 [22.8 kB] Fetched 22.8 kB in 0s (2228 kB/s) dpkg-name: info: moved 'libxss-dev_1%3a1.2.3-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmpwj_e2esg/libxss-dev_1.2.3-1+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b4 [56.6 kB] Fetched 56.6 kB in 0s (0 B/s) dpkg-name: info: moved 'libxpm4_1%3a3.5.17-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmp06rlr6jk/libxpm4_3.5.17-1+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Fetched 54.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphevv9yg8/libxft2_2.3.6-1+b5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.22.1-2+b1 [58.1 kB] Fetched 58.1 kB in 0s (569 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq41to741/libgssrpc4t64_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b1 [191 kB] Fetched 191 kB in 0s (0 B/s) dpkg-name: info: moved 'libxt6t64_1%3a1.2.1-1.3+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpddx50ifh/libxt6t64_1.2.1-1.3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (3039 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8uze7tmw/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (2838 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo45fu8oo/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-2 [242 kB] Fetched 242 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppt5nayv2/gettext-base_0.23.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xfonts-base all 1:1.0.5+nmu1 [5895 kB] Fetched 5895 kB in 0s (51.8 MB/s) dpkg-name: info: moved 'xfonts-base_1%3a1.0.5+nmu1_all.deb' to '/srv/rebuilderd/tmp/tmpa4wmsxeo/xfonts-base_1.0.5+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:15.2.0-5 [1344 B] Fetched 1344 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpp55x8wb0/g++_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libasound2t64 amd64 1.2.15.3-1 [395 kB] Fetched 395 kB in 0s (35.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwozhqikq/libasound2t64_1.2.15.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Fetched 98.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsx_hpsgr/dash_0.5.12-12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libicu78 amd64 78.3-1 [10.0 MB] Fetched 10.0 MB in 0s (174 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsv0jpdry/libicu78_78.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2 [50.4 kB] Fetched 50.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9k0bhlp3/libtasn1-6_4.21.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.30-1 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp74i6l5e6/libthai0_0.1.30-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sysvinit-utils amd64 3.18-1 [29.7 kB] Fetched 29.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy6a3bzov/sysvinit-utils_3.18-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tk8.6 amd64 8.6.17-1+b1 [70.1 kB] Fetched 70.1 kB in 0s (3311 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9jn8er8h/tk8.6_8.6.17-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.6-1 [69.7 kB] Fetched 69.7 kB in 0s (655 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4vvirhjh/librtmp-dev_2.6-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.6+20251231-1 [356 kB] Fetched 356 kB in 0s (34.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqdf1b0_o/libncurses-dev_6.6+20251231-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libatk1.0-0t64 amd64 2.60.0-1+b1 [50.1 kB] Fetched 50.1 kB in 0s (2398 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaw2ecazd/libatk1.0-0t64_2.60.0-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.16-1+b1 [250 kB] Fetched 250 kB in 0s (1693 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprqxm99gv/libcups2t64_2.4.16-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2025.20260124-1 [8520 kB] Fetched 8520 kB in 1s (15.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbh46ivuw/texlive-latex-recommended_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 2.42-2 [144 kB] Fetched 144 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnhdnfy6a/libsmartcols1_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Fetched 211 kB in 0s (4261 kB/s) dpkg-name: info: moved 'libfontbox-java_1%3a1.8.16-5_all.deb' to '/srv/rebuilderd/tmp/tmppzrvbxfy/libfontbox-java_1.8.16-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-5+b2 [51.4 kB] Fetched 51.4 kB in 0s (628 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq7w744od/libptexenc1_2025.20250727.75242+ds-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp70c1rdje/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.46-1+b1 [298 kB] Fetched 298 kB in 0s (29.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_kqg8dzs/libpcre2-8-0_10.46-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpckgat42e/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2+b1 [137 kB] Fetched 137 kB in 0s (1292 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2czrk_ks/libgssapi-krb5-2_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsframe3 amd64 2.46-3 [84.7 kB] Fetched 84.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprr1ptxxk/libsframe3_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-2 [393 kB] Fetched 393 kB in 0s (33.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7ihhh7a/libssh2-1-dev_1.11.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-6 [494 kB] Fetched 494 kB in 0s (39.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmporx29syf/autoconf_2.72-6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b2 [106 kB] Fetched 106 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkylu9760/libxcb-present0_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsharpyuv-dev amd64 1.5.0-0.1+b1 [120 kB] Fetched 120 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4n13c4e_/libsharpyuv-dev_1.5.0-0.1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 make amd64 4.4.1-3 [463 kB] Fetched 463 kB in 0s (41.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoax1kvu0/make_4.4.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.56-1 [289 kB] Fetched 289 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiesr2kic/libpng16-16t64_1.6.56-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Fetched 866 kB in 0s (67.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiitgp9yc/libpython3.13-minimal_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 26.0-1 [64.3 kB] Fetched 64.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprcmnvaeg/python3-packaging_26.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b1 [37.9 kB] Fetched 37.9 kB in 0s (3781 kB/s) dpkg-name: info: moved 'libsm6_2%3a1.2.6-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpatyn6dv4/libsm6_1.2.6-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblerc-dev amd64 4.1.0+ds-1 [201 kB] Fetched 201 kB in 0s (18.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpne7ulh1a/liblerc-dev_4.1.0+ds-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openjdk-25-jdk amd64 25.0.3~7ea-2 [3766 kB] Fetched 3766 kB in 0s (18.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2u6u9b96/openjdk-25-jdk_25.0.3~7ea-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmount-dev amd64 2.42-2 [25.8 kB] Fetched 25.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgvmgua9/libmount-dev_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ca-certificates-java all 20260311 [11.2 kB] Fetched 11.2 kB in 0s (302 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8lvzti9/ca-certificates-java_20260311_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-16 [13.2 MB] Fetched 13.2 MB in 0s (180 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwd5coovu/g++-15-x86-64-linux-gnu_15.2.0-16_amd64.deb' Downloading dependency 1 of 540: dpkg-dev:amd64=1.23.7 Downloading dependency 2 of 540: gfortran-for-host:amd64=4:15.2.0-5 Downloading dependency 3 of 540: libubsan1:amd64=16-20260322-1 Downloading dependency 4 of 540: xdg-utils:amd64=1.2.1-2 Downloading dependency 5 of 540: libc-bin:amd64=2.42-14 Downloading dependency 6 of 540: libdatrie-dev:amd64=0.2.14-1 Downloading dependency 7 of 540: dbus-user-session:amd64=1.16.2-4 Downloading dependency 8 of 540: libsensors5:amd64=1:3.6.2-2+b1 Downloading dependency 9 of 540: libcrypt1:amd64=1:4.5.1-1 Downloading dependency 10 of 540: libunicode-linebreak-perl:amd64=0.0.20190101-3 Downloading dependency 11 of 540: libxdmcp6:amd64=1:1.1.5-2 Downloading dependency 12 of 540: netbase:amd64=6.5 Downloading dependency 13 of 540: dconf-service:amd64=0.49.0-4 Downloading dependency 14 of 540: dh-strip-nondeterminism:amd64=1.15.0-1 Downloading dependency 15 of 540: libselinux-dev:amd64=3.10-1 Downloading dependency 16 of 540: libpangoft2-1.0-0:amd64=1.57.1-1 Downloading dependency 17 of 540: libwayland-client0:amd64=1.24.0-2+b2 Downloading dependency 18 of 540: libfontconfig1:amd64=2.17.1-5 Downloading dependency 19 of 540: libtiff6:amd64=4.7.1-2 Downloading dependency 20 of 540: libxkbcommon0:amd64=1.13.1-1 Downloading dependency 21 of 540: libc6-dev:amd64=2.42-14 Downloading dependency 22 of 540: librsvg2-2:amd64=2.62.1+dfsg-1 Downloading dependency 23 of 540: fontconfig-config:amd64=2.17.1-5 Downloading dependency 24 of 540: libyaml-tiny-perl:amd64=1.76-1 Downloading dependency 25 of 540: fontconfig:amd64=2.17.1-5 Downloading dependency 26 of 540: libquadmath0:amd64=16-20260322-1 Downloading dependency 27 of 540: coreutils:amd64=9.10-1 Downloading dependency 28 of 540: libjpeg62-turbo:amd64=1:2.1.5-4 Downloading dependency 29 of 540: bzip2:amd64=1.0.8-6+b1 Downloading dependency 30 of 540: gcc-for-host:amd64=4:15.2.0-5 Downloading dependency 31 of 540: readline-common:amd64=8.3-4 Downloading dependency 32 of 540: libngtcp2-dev:amd64=1.21.0-1 Downloading dependency 33 of 540: bash:amd64=5.3-2 Downloading dependency 34 of 540: glycin-thumbnailers:amd64=2.0.8-1 Downloading dependency 35 of 540: default-jre-headless:amd64=2:1.25-77 Downloading dependency 36 of 540: sed:amd64=4.9-2 Downloading dependency 37 of 540: tcl8.6:amd64=8.6.17+dfsg-1+b1 Downloading dependency 38 of 540: libk5crypto3:amd64=1.22.1-2+b1 Downloading dependency 39 of 540: libsqlite3-0:amd64=3.46.1-9+b1 Downloading dependency 40 of 540: libgmp10:amd64=2:6.3.0+dfsg-5+b1 Downloading dependency 41 of 540: libavahi-common-data:amd64=0.8-18 Downloading dependency 42 of 540: libkrb5-dev:amd64=1.22.1-2+b1 Downloading dependency 43 of 540: libpixman-1-dev:amd64=0.46.4-1+b1 Downloading dependency 44 of 540: gtk-update-icon-cache:amd64=4.22.2+ds-2 Downloading dependency 45 of 540: libfontenc1:amd64=1:1.1.8-1+b3 Downloading dependency 46 of 540: libxres1:amd64=2:1.2.1-2 Downloading dependency 47 of 540: libkpathsea6:amd64=2025.20250727.75242+ds-5+b2 Downloading dependency 48 of 540: ca-certificates:amd64=20260223 Downloading dependency 49 of 540: libtcl8.6:amd64=8.6.17+dfsg-1+b1 Downloading dependency 50 of 540: libkdb5-10t64:amd64=1.22.1-2+b1 Downloading dependency 51 of 540: debhelper:amd64=13.31 Downloading dependency 52 of 540: libsepol-dev:amd64=3.10-1 Downloading dependency 53 of 540: libxkbfile1:amd64=1:1.1.0-1+b5 Downloading dependency 54 of 540: libasan8:amd64=16-20260322-1 Downloading dependency 55 of 540: libgraphite2-dev:amd64=1.3.14-13 Downloading dependency 56 of 540: libstdc++6:amd64=16-20260322-1 Downloading dependency 57 of 540: binutils-x86-64-linux-gnu:amd64=2.46-3 Downloading dependency 58 of 540: libxml-namespacesupport-perl:amd64=1.12-2 Downloading dependency 59 of 540: libgfortran-15-dev:amd64=15.2.0-16 Downloading dependency 60 of 540: liblapack-dev:amd64=3.12.1-7+b1 Downloading dependency 61 of 540: libzstd-dev:amd64=1.5.7+dfsg-3+b1 Downloading dependency 62 of 540: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 63 of 540: dconf-gsettings-backend:amd64=0.49.0-4 Downloading dependency 64 of 540: libsysprof-capture-4-dev:amd64=50.0-1 Downloading dependency 65 of 540: libmpfi0:amd64=1.5.4+ds-5 Downloading dependency 66 of 540: libxcursor1:amd64=1:1.2.3-1+b1 Downloading dependency 67 of 540: libfribidi-dev:amd64=1.0.16-5 Downloading dependency 68 of 540: libitm1:amd64=16-20260322-1 Downloading dependency 69 of 540: libxaw7:amd64=2:1.0.16-1+b1 Downloading dependency 70 of 540: fonts-dejavu-mono:amd64=2.37-8 Downloading dependency 71 of 540: xz-utils:amd64=5.8.3-1 Downloading dependency 72 of 540: libmagic1t64:amd64=1:5.46-5+b1 Downloading dependency 73 of 540: libteckit0:amd64=2.5.13+ds-1 Downloading dependency 74 of 540: libwebpmux3:amd64=1.5.0-0.1+b1 Downloading dependency 75 of 540: libxcb-glx0:amd64=1.17.0-2+b2 Downloading dependency 76 of 540: mawk:amd64=1.3.4.20260302-1 Downloading dependency 77 of 540: libxt-dev:amd64=1:1.2.1-1.3+b1 Downloading dependency 78 of 540: libharfbuzz0b:amd64=12.3.2-2+b2 Downloading dependency 79 of 540: tex-common:amd64=6.20 Downloading dependency 80 of 540: libbrotli1:amd64=1.2.0-3 Downloading dependency 81 of 540: libmount1:amd64=2.42-2 Downloading dependency 82 of 540: libblkid-dev:amd64=2.42-2 Downloading dependency 83 of 540: libstdc++-15-dev:amd64=15.2.0-16 Downloading dependency 84 of 540: libxss-dev:amd64=1:1.2.3-1+b4 Downloading dependency 85 of 540: libxpm4:amd64=1:3.5.17-1+b4 Downloading dependency 86 of 540: libxft2:amd64=2.3.6-1+b5 Downloading dependency 87 of 540: libgssrpc4t64:amd64=1.22.1-2+b1 Downloading dependency 88 of 540: libxt6t64:amd64=1:1.2.1-1.3+b1 Downloading dependency 89 of 540: media-types:amd64=14.0.0 Downloading dependency 90 of 540: init-system-helpers:amd64=1.69 Downloading dependency 91 of 540: gettext-base:amd64=0.23.2-2 Downloading dependency 92 of 540: xfonts-base:amd64=1:1.0.5+nmu1 Downloading dependency 93 of 540: g++:amd64=4:15.2.0-5 Downloading dependency 94 of 540: libasound2t64:amd64=1.2.15.3-1 Downloading dependency 95 of 540: dash:amd64=0.5.12-12 Downloading dependency 96 of 540: libicu78:amd64=78.3-1 Downloading dependency 97 of 540: libtasn1-6:amd64=4.21.0-2 Downloading dependency 98 of 540: libthai0:amd64=0.1.30-1 Downloading dependency 99 of 540: sysvinit-utils:amd64=3.18-1 Downloading dependency 100 of 540: tk8.6:amd64=8.6.17-1+b1 Downloading dependency 101 of 540: librtmp-dev:amd64=2.6-1 Downloading dependency 102 of 540: libncurses-dev:amd64=6.6+20251231-1 Downloading dependency 103 of 540: libatk1.0-0t64:amd64=2.60.0-1+b1 Downloading dependency 104 of 540: libcups2t64:amd64=2.4.16-1+b1 Downloading dependency 105 of 540: texlive-latex-recommended:amd64=2025.20260124-1 Downloading dependency 106 of 540: libsmartcols1:amd64=2.42-2 Downloading dependency 107 of 540: libfontbox-java:amd64=1:1.8.16-5 Downloading dependency 108 of 540: libptexenc1:amd64=2025.20250727.75242+ds-5+b2 Downloading dependency 109 of 540: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 110 of 540: libpcre2-8-0:amd64=10.46-1+b1 Downloading dependency 111 of 540: libaudit-common:amd64=1:4.1.2-1 Downloading dependency 112 of 540: libgssapi-krb5-2:amd64=1.22.1-2+b1 Downloading dependency 113 of 540: libsframe3:amd64=2.46-3 Downloading dependency 114 of 540: libssh2-1-dev:amd64=1.11.1-2 Downloading dependency 115 of 540: autoconf:amd64=2.72-6 Downloading dependency 116 of 540: libxcb-present0:amd64=1.17.0-2+b2 Downloading dependency 117 of 540: libsharpyuv-dev:amd64=1.5.0-0.1+b1 Downloading dependency 118 of 540: make:amd64=4.4.1-3 Downloading dependency 119 of 540: libpng16-16t64:amd64=1.6.56-1 Downloading dependency 120 of 540: libpython3.13-minimal:amd64=3.13.12-1 Downloading dependency 121 of 540: python3-packaging:amd64=26.0-1 Downloading dependency 122 of 540: libsm6:amd64=2:1.2.6-1+b1 Downloading dependency 123 of 540: liblerc-dev:amd64=4.1.0+ds-1 Downloading dependency 124 of 540: openjdk-25-jdk:amd64=25.0.3~7ea-2 Downloading dependency 125 of 540: libmount-dev:amd64=2.42-2 Downloading dependency 126 of 540: ca-certificates-java:amd64=20260311 Downloading dependency 127 of 540: g++-15-x86-64-linux-gnu:amd64=15.2.0-16 Downloading dependency 128 of 540: libgnutls28-dev:amd64=3.8.12-3Get:1 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.12-3 [1450 kB] Fetched 1450 kB in 0s (83.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc2ok_7vt/libgnutls28-dev_3.8.12-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libllvm21 amd64 1:21.1.8-7 [28.3 MB] Fetched 28.3 MB in 0s (171 MB/s) dpkg-name: info: moved 'libllvm21_1%3a21.1.8-7_amd64.deb' to '/srv/rebuilderd/tmp/tmp0d2v2xek/libllvm21_21.1.8-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.6.1-3 [2478 kB] Fetched 2478 kB in 0s (115 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4c5_gtb2/libssl3t64_3.6.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-extra-utils all 2025.20260124-1 [70.7 MB] Fetched 70.7 MB in 2s (29.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0f29am98/texlive-extra-utils_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.19.0-3 [408 kB] Fetched 408 kB in 0s (35.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp__aki2i/libcurl4t64_8.19.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmdmrmkze/libmpc3_1.3.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Fetched 346 kB in 0s (30.4 MB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.13-1_all.deb' to '/srv/rebuilderd/tmp/tmpzwlce3fq/libx11-data_1.8.13-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.3-1 [332 kB] Fetched 332 kB in 0s (30.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfiutl28/liblzma5_5.8.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libselinux1 amd64 3.10-1 [85.4 kB] Fetched 85.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx6p8db3y/libselinux1_3.10-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Fetched 338 kB in 0s (29.4 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp66vzh7gd/libmagic-mgc_5.46-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.10.0-3 [700 kB] Fetched 700 kB in 0s (54.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp49mblu4n/findutils_4.10.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Fetched 10.8 kB in 0s (215 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcth6he2b/libcommons-parent-java_56-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpangoxft-1.0-0 amd64 1.57.1-1 [22.2 kB] Fetched 22.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn_4trln1/libpangoxft-1.0-0_1.57.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 binutils-common amd64 2.46-3 [2632 kB] Fetched 2632 kB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbr71s431/binutils-common_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.2-1+b1 [1321 kB] Fetched 1321 kB in 0s (5885 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnnnkfpa3/nettle-dev_3.10.2-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxft-dev amd64 2.3.6-1+b5 [73.6 kB] Fetched 73.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp99_p4yo/libxft-dev_2.3.6-1+b5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsombok3 amd64 2.4.0-2+b3 [32.2 kB] Fetched 32.2 kB in 0s (1352 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4g1m_k5i/libsombok3_2.4.0-2+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libepoxy0 amd64 1.5.10-2+b1 [196 kB] Fetched 196 kB in 0s (19.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2l1lx73_/libepoxy0_1.5.10-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1+b1 [313 kB] Fetched 313 kB in 0s (27.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprlof1pil/libldap-dev_2.6.10+dfsg-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.2.0-3 [324 kB] Fetched 324 kB in 0s (29.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb9y6g_5o/libbrotli-dev_1.2.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Fetched 480 kB in 0s (39.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmposp20d4c/libunistring5_1.4.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgcc-s1 amd64 16-20260322-1 [74.0 kB] Fetched 74.0 kB in 0s (7264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp55clhsog/libgcc-s1_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libudev1 amd64 260.1-1 [133 kB] Fetched 133 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjj9_c_r0/libudev1_260.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 33-2 [5852 B] Fetched 5852 B in 0s (320 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfn5rdapf/libapache-pom-java_33-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.26.2-2 [470 kB] Fetched 470 kB in 0s (42.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp55e0y__x/libp11-kit0_0.26.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260409T202916Z forky/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11 [710 kB] Fetched 710 kB in 0s (57.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpta7f5gro/libdb5.3t64_5.3.28+dfsg2-11_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Fetched 10.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk_qpn0wl/libpython3-stdlib_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b2 [107 kB] Fetched 107 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoq8tjq9f/libxcb-dri3-0_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Fetched 53.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfag8qba2/libxml-sax-perl_1.02+dfsg-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.31 [75.7 kB] Fetched 75.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0pxtfxdr/libdebhelper-perl_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.131-1 [39.9 kB] Fetched 39.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbhopbo0x/libdrm2_2.4.131-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Fetched 90.9 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpbmzc2z1h/zlib1g_1.3.dfsg+really1.3.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.6+20251231-1 [445 kB] Fetched 445 kB in 0s (39.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2o9ijtn/ncurses-bin_6.6+20251231-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-dev-bin amd64 2.42-14 [37.5 kB] Fetched 37.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr8qux803/libc-dev-bin_2.42-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-dev amd64 12.3.2-2+b2 [148 kB] Fetched 148 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvslxcq15/libharfbuzz-dev_12.3.2-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsystemd-shared amd64 260.1-1 [2398 kB] Fetched 2398 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0_1bmten/libsystemd-shared_260.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libwayland-cursor0 amd64 1.24.0-2+b2 [12.3 kB] Fetched 12.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp__txf845/libwayland-cursor0_1.24.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (24.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8sdkotoq/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 binutils amd64 2.46-3 [282 kB] Fetched 282 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1kw4v_fx/binutils_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfreetype-dev amd64 2.14.3+dfsg-1 [664 kB] Fetched 664 kB in 0s (47.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpts1eujrc/libfreetype-dev_2.14.3+dfsg-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgtk-3-common all 3.24.52-1 [4929 kB] Fetched 4929 kB in 0s (27.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeduip3dy/libgtk-3-common_3.24.52-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Fetched 16.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libsensors-config_1%3a3.6.2-2_all.deb' to '/srv/rebuilderd/tmp/tmp7u47iua8/libsensors-config_3.6.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-16-base amd64 16-20260322-1 [35.5 kB] Fetched 35.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9jbk8c3/gcc-16-base_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.21.2-4 [16.9 kB] Fetched 16.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr5jj434m/libheif-plugin-libde265_1.21.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_j9rfwxl/dwz_0.16-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Fetched 115 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1qkxghq3/libxcb-render0_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcloudproviders0 amd64 0.4.0-2 [29.1 kB] Fetched 29.1 kB in 0s (1193 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplx2cdohl/libcloudproviders0_0.4.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libapparmor1 amd64 4.1.7-1 [36.1 kB] Fetched 36.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfqv3mo8z/libapparmor1_4.1.7-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.5-1 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeqp_ql0z/libexpat1_2.7.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dbus-system-bus-common all 1.16.2-4 [54.1 kB] Fetched 54.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgwfv5np/dbus-system-bus-common_1.16.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbinutils amd64 2.46-3 [548 kB] Fetched 548 kB in 0s (47.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2xg6lrdm/libbinutils_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2025.20260124-1 [1340 kB] Fetched 1340 kB in 0s (36.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5aluoed5/texlive-latex-base_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libwayland-egl1 amd64 1.24.0-2+b2 [6216 B] Fetched 6216 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoq_70gwr/libwayland-egl1_1.24.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcolord2 amd64 1.4.8-3 [141 kB] Fetched 141 kB in 0s (3170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxoa7hb83/libcolord2_1.4.8-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-15 amd64 15.2.0-16 [27.1 kB] Fetched 27.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_4dwcsv/g++-15_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 default-jdk-headless amd64 2:1.25-77 [1080 B] Fetched 1080 B in 0s (9433 B/s) dpkg-name: info: moved 'default-jdk-headless_2%3a1.25-77_amd64.deb' to '/srv/rebuilderd/tmp/tmpottxzp6t/default-jdk-headless_1.25-77_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b2 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamv_r705/libxcb-xfixes0_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.21.0-2 [99.7 kB] Fetched 99.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5iy3m37/libtasn1-6-dev_4.21.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Fetched 105 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp88pukuyq/libxcb-shm0_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmime-charset-perl all 1.013.1-2 [34.0 kB] Fetched 34.0 kB in 0s (1443 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn038uq6e/libmime-charset-perl_1.013.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhwasan0 amd64 16-20260322-1 [1580 kB] Fetched 1580 kB in 0s (90.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbijqbjp/libhwasan0_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsmv_vsmg/python3_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.6+dfsg-2 [96.1 kB] Fetched 96.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpysze_26x/libgdk-pixbuf-2.0-0_2.44.6+dfsg-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr99vw02y/debconf_1.5.92_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.7+ds-1 [190 kB] Fetched 190 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpagyr06ix/libtirpc-dev_1.3.7+ds-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2+b1 [49.5 kB] Fetched 49.5 kB in 0s (4878 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv51t6cr_/libdeflate0_1.23-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppkkr6etu/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7+b1 [222 kB] Fetched 222 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24nhhuyh/libblas-dev_3.12.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.21.2-4 [649 kB] Fetched 649 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnukf9_1n/libheif1_1.21.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 78.3-1 [212 kB] Fetched 212 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf62rwegb/icu-devtools_78.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1+b1 [53.1 kB] Fetched 53.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw8mbovfs/libgdbm-compat4t64_1.26-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtnf0i50/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.3-4 [163 kB] Fetched 163 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpps01z6_a/libreadline-dev_8.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsystemd0 amd64 260.1-1 [446 kB] Fetched 446 kB in 0s (40.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0wyxd7s/libsystemd0_260.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcap2 amd64 1:2.78-1 [26.9 kB] Fetched 26.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.78-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0n90nvmk/libcap2_2.78-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42-2 [99.0 kB] Fetched 99.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppse0roip/bsdextrautils_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-4+b1 [103 kB] Fetched 103 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplnfs9qnw/libidn2-dev_2.3.8-4+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-3 [544 kB] Fetched 544 kB in 0s (45.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxmc37jr/libcairo2_1.18.4-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcc1-0 amd64 16-20260322-1 [45.8 kB] Fetched 45.8 kB in 0s (4303 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeaz61obd/libcc1-0_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xvfb amd64 2:21.1.21-1 [3242 kB] Fetched 3242 kB in 0s (116 MB/s) dpkg-name: info: moved 'xvfb_2%3a21.1.21-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpkw25xvcl/xvfb_21.1.21-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-render0-dev amd64 1.17.0-2+b2 [118 kB] Fetched 118 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgtwd3xo4/libxcb-render0-dev_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-plain-generic all 2025.20260124-1 [29.9 MB] Fetched 29.9 MB in 1s (27.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07r7u43w/texlive-plain-generic_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl-dev amd64 1.21.0-1 [72.7 kB] Fetched 72.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfvp3080h/libngtcp2-crypto-ossl-dev_1.21.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.88.0-1 [1536 kB] Fetched 1536 kB in 0s (96.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmdnbgh26/libglib2.0-0t64_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2025.20260124-1 [32.8 MB] Fetched 32.8 MB in 1s (23.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0x7eqej/texlive-latex-extra_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.21.0-1 [136 kB] Fetched 136 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpec2e_7ol/libngtcp2-16_1.21.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 26.0.4-1 [43.6 kB] Fetched 43.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphddpajyp/libgl1-mesa-dri_26.0.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-systemd amd64 260.1-1 [299 kB] Fetched 299 kB in 0s (29.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcyp8qtsg/libpam-systemd_260.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.4-1 [50.9 kB] Fetched 50.9 kB in 0s (4950 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplcoldr_6/comerr-dev_2.1-1.47.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.6+20251231-1 [106 kB] Fetched 106 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpazdzw025/libncurses6_6.6+20251231-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcairo-gobject2 amd64 1.18.4-3 [130 kB] Fetched 130 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfbtgjud9/libcairo-gobject2_1.18.4-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libintl-perl all 1.37-1 [696 kB] Fetched 696 kB in 0s (55.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ebmyn33/libintl-perl_1.37-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Fetched 55.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphe8pfotw/libsasl2-2_2.1.28+dfsg1-11_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-5 [1436 B] Fetched 1436 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpa44mdyzf/gcc-x86-64-linux-gnu_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdconf1 amd64 0.49.0-4 [43.9 kB] Fetched 43.9 kB in 0s (4304 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppns1uhaw/libdconf1_0.49.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2025.1-1 [605 kB] Fetched 605 kB in 0s (48.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qfi3okp/x11proto-dev_2025.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026a-3 [260 kB] Fetched 260 kB in 0s (23.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptnvt25se/tzdata_2026a-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcsclite1 amd64 2.4.1-1 [56.1 kB] Fetched 56.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi6zoeo12/libpcsclite1_2.4.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bubblewrap amd64 0.11.1-1 [51.0 kB] Fetched 51.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprx7mmjfg/bubblewrap_0.11.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-2 [244 kB] Fetched 244 kB in 0s (23.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ct7onv4/libssh2-1t64_1.11.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcairo2-dev amd64 1.18.4-3 [43.2 kB] Fetched 43.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqxwr667g/libcairo2-dev_1.18.4-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Fetched 577 kB in 0s (10.0 MB/s) dpkg-name: info: moved 'xfonts-encodings_1%3a1.0.4-2.2_all.deb' to '/srv/rebuilderd/tmp/tmph0gvhc1m/xfonts-encodings_1.0.4-2.2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Fetched 68.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp186t4xl7/libuchardet0_0.0.8-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5+b2 [113 kB] Fetched 113 kB in 0s (2528 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps8web3du/libtexlua53-5_2025.20250727.75242+ds-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxdamage1 amd64 1:1.1.7-1 [16.0 kB] Fetched 16.0 kB in 0s (666 kB/s) dpkg-name: info: moved 'libxdamage1_1%3a1.1.7-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp315g1vrh/libxdamage1_1.1.7-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnettle8t64 amd64 3.10.2-1+b1 [305 kB] Fetched 305 kB in 0s (1861 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_o43fj79/libnettle8t64_3.10.2-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-2 [43.7 kB] Fetched 43.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.5-2_amd64.deb' to '/srv/rebuilderd/tmp/tmp2y1p_037/libxdmcp-dev_1.1.5-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-4 [817 kB] Fetched 817 kB in 0s (60.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbnnn0zbi/tar_1.35+dfsg-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.68.1-1 [72.0 kB] Fetched 72.0 kB in 0s (7176 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7jacurwb/libnghttp2-14_1.68.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Fetched 292 kB in 0s (27.8 MB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.1.5-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp_yc94_f2/libjpeg62-turbo-dev_2.1.5-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b3 [16.7 kB] Fetched 16.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsqa4y89_/libpaper2_2.2.5-0.3+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libatomic1 amd64 16-20260322-1 [10.5 kB] Fetched 10.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa0x4d7c4/libatomic1_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Fetched 47.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy2ogw1ui/libpkgconf7_2.5.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dpkg amd64 1.23.7 [1531 kB] Fetched 1531 kB in 0s (94.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsf_y5e_d/dpkg_1.23.7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Fetched 332 kB in 0s (32.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcofb3boe/m4_1.4.21-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dbus-daemon amd64 1.16.2-4 [160 kB] Fetched 160 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpht_shc4c/dbus-daemon_1.16.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev amd64 2.88.0-1 [1697 kB] Fetched 1697 kB in 0s (98.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpruhoa_rw/libgio-2.0-dev_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev-bin amd64 2.88.0-1 [150 kB] Fetched 150 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptq2j687g/libgio-2.0-dev-bin_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.1.0-2+b2 [36.2 kB] Fetched 36.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq0w_9xq7/libmd0_1.1.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.46-1+b1 [281 kB] Fetched 281 kB in 0s (24.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqlgaffn8/libpcre2-16-0_10.46-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:15.2.0-5 [1564 B] Fetched 1564 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp14ohfabv/cpp_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.13-1 [250 kB] Fetched 250 kB in 0s (24.1 MB/s) dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpm_1ejzuu/libx11-xcb1_1.8.13-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.57.1-1 [224 kB] Fetched 224 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj6d8ee38/libpango-1.0-0_1.57.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-3 [51.1 kB] Fetched 51.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1jnngj_c/libglvnd0_1.7.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Fetched 5527 kB in 0s (31.0 MB/s) dpkg-name: info: moved 'libpdfbox-java_1%3a1.8.16-5_all.deb' to '/srv/rebuilderd/tmp/tmpyilzkjnf/libpdfbox-java_1.8.16-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14 [72.9 kB] Fetched 72.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoh5m4t46/base-files_14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgcc-15-dev amd64 15.2.0-16 [2718 kB] Fetched 2718 kB in 0s (117 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxyvlxhao/libgcc-15-dev_15.2.0-16_amd64.deb' Downloading dependency 129 of 540: libllvm21:amd64=1:21.1.8-7 Downloading dependency 130 of 540: libssl3t64:amd64=3.6.1-3 Downloading dependency 131 of 540: texlive-extra-utils:amd64=2025.20260124-1 Downloading dependency 132 of 540: libcurl4t64:amd64=8.19.0-3 Downloading dependency 133 of 540: libmpc3:amd64=1.3.1-3 Downloading dependency 134 of 540: libx11-data:amd64=2:1.8.13-1 Downloading dependency 135 of 540: liblzma5:amd64=5.8.3-1 Downloading dependency 136 of 540: libselinux1:amd64=3.10-1 Downloading dependency 137 of 540: libmagic-mgc:amd64=1:5.46-5+b1 Downloading dependency 138 of 540: findutils:amd64=4.10.0-3 Downloading dependency 139 of 540: libcommons-parent-java:amd64=56-1 Downloading dependency 140 of 540: libpangoxft-1.0-0:amd64=1.57.1-1 Downloading dependency 141 of 540: binutils-common:amd64=2.46-3 Downloading dependency 142 of 540: 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libdebhelper-perl:amd64=13.31 Downloading dependency 158 of 540: libdrm2:amd64=2.4.131-1 Downloading dependency 159 of 540: zlib1g:amd64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 160 of 540: ncurses-bin:amd64=6.6+20251231-1 Downloading dependency 161 of 540: libc-dev-bin:amd64=2.42-14 Downloading dependency 162 of 540: libharfbuzz-dev:amd64=12.3.2-2+b2 Downloading dependency 163 of 540: libsystemd-shared:amd64=260.1-1 Downloading dependency 164 of 540: libwayland-cursor0:amd64=1.24.0-2+b2 Downloading dependency 165 of 540: ncurses-base:amd64=6.6+20251231-1 Downloading dependency 166 of 540: binutils:amd64=2.46-3 Downloading dependency 167 of 540: libfreetype-dev:amd64=2.14.3+dfsg-1 Downloading dependency 168 of 540: libgtk-3-common:amd64=3.24.52-1 Downloading dependency 169 of 540: libsensors-config:amd64=1:3.6.2-2 Downloading dependency 170 of 540: gcc-16-base:amd64=16-20260322-1 Downloading dependency 171 of 540: libheif-plugin-libde265:amd64=1.21.2-4 Downloading dependency 172 of 540: dwz:amd64=0.16-4 Downloading dependency 173 of 540: libxcb-render0:amd64=1.17.0-2+b2 Downloading dependency 174 of 540: libcloudproviders0:amd64=0.4.0-2 Downloading dependency 175 of 540: libapparmor1:amd64=4.1.7-1 Downloading dependency 176 of 540: libexpat1:amd64=2.7.5-1 Downloading dependency 177 of 540: dbus-system-bus-common:amd64=1.16.2-4 Downloading dependency 178 of 540: libbinutils:amd64=2.46-3 Downloading dependency 179 of 540: texlive-latex-base:amd64=2025.20260124-1 Downloading dependency 180 of 540: libwayland-egl1:amd64=1.24.0-2+b2 Downloading dependency 181 of 540: libcolord2:amd64=1.4.8-3 Downloading dependency 182 of 540: g++-15:amd64=15.2.0-16 Downloading dependency 183 of 540: default-jdk-headless:amd64=2:1.25-77 Downloading dependency 184 of 540: libxcb-xfixes0:amd64=1.17.0-2+b2 Downloading dependency 185 of 540: libtasn1-6-dev:amd64=4.21.0-2 Downloading dependency 186 of 540: libxcb-shm0:amd64=1.17.0-2+b2 Downloading dependency 187 of 540: libmime-charset-perl:amd64=1.013.1-2 Downloading dependency 188 of 540: libhwasan0:amd64=16-20260322-1 Downloading dependency 189 of 540: python3:amd64=3.13.9-3 Downloading dependency 190 of 540: libgdk-pixbuf-2.0-0:amd64=2.44.6+dfsg-2 Downloading dependency 191 of 540: debconf:amd64=1.5.92 Downloading dependency 192 of 540: libtirpc-dev:amd64=1.3.7+ds-1 Downloading dependency 193 of 540: libdeflate0:amd64=1.23-2+b1 Downloading dependency 194 of 540: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 195 of 540: libblas-dev:amd64=3.12.1-7+b1 Downloading dependency 196 of 540: libheif1:amd64=1.21.2-4 Downloading dependency 197 of 540: icu-devtools:amd64=78.3-1 Downloading dependency 198 of 540: libgdbm-compat4t64:amd64=1.26-1+b1 Downloading dependency 199 of 540: sensible-utils:amd64=0.0.26 Downloading dependency 200 of 540: libreadline-dev:amd64=8.3-4 Downloading dependency 201 of 540: libsystemd0:amd64=260.1-1 Downloading dependency 202 of 540: libcap2:amd64=1:2.78-1 Downloading dependency 203 of 540: bsdextrautils:amd64=2.42-2 Downloading dependency 204 of 540: libidn2-dev:amd64=2.3.8-4+b1 Downloading dependency 205 of 540: libcairo2:amd64=1.18.4-3 Downloading dependency 206 of 540: libcc1-0:amd64=16-20260322-1 Downloading dependency 207 of 540: xvfb:amd64=2:21.1.21-1 Downloading dependency 208 of 540: libxcb-render0-dev:amd64=1.17.0-2+b2 Downloading dependency 209 of 540: texlive-plain-generic:amd64=2025.20260124-1 Downloading dependency 210 of 540: libngtcp2-crypto-ossl-dev:amd64=1.21.0-1 Downloading dependency 211 of 540: libglib2.0-0t64:amd64=2.88.0-1 Downloading dependency 212 of 540: texlive-latex-extra:amd64=2025.20260124-1 Downloading dependency 213 of 540: libngtcp2-16:amd64=1.21.0-1 Downloading dependency 214 of 540: libgl1-mesa-dri:amd64=26.0.4-1 Downloading dependency 215 of 540: libpam-systemd:amd64=260.1-1 Downloading dependency 216 of 540: comerr-dev:amd64=2.1-1.47.4-1 Downloading dependency 217 of 540: libncurses6:amd64=6.6+20251231-1 Downloading dependency 218 of 540: libcairo-gobject2:amd64=1.18.4-3 Downloading dependency 219 of 540: libintl-perl:amd64=1.37-1 Downloading dependency 220 of 540: libsasl2-2:amd64=2.1.28+dfsg1-11 Downloading dependency 221 of 540: gcc-x86-64-linux-gnu:amd64=4:15.2.0-5 Downloading dependency 222 of 540: libdconf1:amd64=0.49.0-4 Downloading dependency 223 of 540: x11proto-dev:amd64=2025.1-1 Downloading dependency 224 of 540: tzdata:amd64=2026a-3 Downloading dependency 225 of 540: libpcsclite1:amd64=2.4.1-1 Downloading dependency 226 of 540: bubblewrap:amd64=0.11.1-1 Downloading dependency 227 of 540: libssh2-1t64:amd64=1.11.1-2 Downloading dependency 228 of 540: libcairo2-dev:amd64=1.18.4-3 Downloading dependency 229 of 540: xfonts-encodings:amd64=1:1.0.4-2.2 Downloading dependency 230 of 540: libuchardet0:amd64=0.0.8-2+b1 Downloading dependency 231 of 540: libtexlua53-5:amd64=2025.20250727.75242+ds-5+b2 Downloading dependency 232 of 540: libxdamage1:amd64=1:1.1.7-1 Downloading dependency 233 of 540: libnettle8t64:amd64=3.10.2-1+b1 Downloading dependency 234 of 540: libxdmcp-dev:amd64=1:1.1.5-2 Downloading dependency 235 of 540: tar:amd64=1.35+dfsg-4 Downloading dependency 236 of 540: libnghttp2-14:amd64=1.68.1-1 Downloading dependency 237 of 540: libjpeg62-turbo-dev:amd64=1:2.1.5-4 Downloading dependency 238 of 540: libpaper2:amd64=2.2.5-0.3+b3 Downloading dependency 239 of 540: libatomic1:amd64=16-20260322-1 Downloading dependency 240 of 540: libpkgconf7:amd64=2.5.1-4 Downloading dependency 241 of 540: dpkg:amd64=1.23.7 Downloading dependency 242 of 540: m4:amd64=1.4.21-1 Downloading dependency 243 of 540: dbus-daemon:amd64=1.16.2-4 Downloading dependency 244 of 540: libgio-2.0-dev:amd64=2.88.0-1 Downloading dependency 245 of 540: libgio-2.0-dev-bin:amd64=2.88.0-1 Downloading dependency 246 of 540: libmd0:amd64=1.1.0-2+b2 Downloading dependency 247 of 540: libpcre2-16-0:amd64=10.46-1+b1 Downloading dependency 248 of 540: cpp:amd64=4:15.2.0-5 Downloading dependency 249 of 540: libx11-xcb1:amd64=2:1.8.13-1 Downloading dependency 250 of 540: libpango-1.0-0:amd64=1.57.1-1 Downloading dependency 251 of 540: libglvnd0:amd64=1.7.0-3 Downloading dependency 252 of 540: libpdfbox-java:amd64=1:1.8.16-5 Downloading dependency 253 of 540: base-files:amd64=14 Downloading dependency 254 of 540: libgcc-15-dev:amd64=15.2.0-16 Downloading dependency 255 of 540: libx11-6:amd64=2:1.8.13-1Get:1 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Fetched 829 kB in 0s (60.4 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpf7_pv9tf/libx11-6_1.8.13-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Fetched 10.0 kB in 0s (999 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z6dkjju/libtirpc-common_1.3.7+ds-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglycin-2-0 amd64 2.0.8-1 [1423 kB] Fetched 1423 kB in 0s (78.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvao3bahe/libglycin-2-0_2.0.8-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-5 [1200 B] Fetched 1200 B in 0s (0 B/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp4k2tnjda/g++-x86-64-linux-gnu_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-3 [36.1 kB] Fetched 36.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsytg70ai/libglx0_1.7.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.22.1-2+b1 [54.0 kB] Fetched 54.0 kB in 0s (573 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp46qmfn7_/libkadm5srv-mit12_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Fetched 1194 kB in 0s (83.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp35lya45m/groff-base_1.23.0-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libasound2-data all 1.2.15.3-1 [21.2 kB] Fetched 21.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp712_2l_/libasound2-data_1.2.15.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.18-1 [187 kB] Fetched 187 kB in 0s (18.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp99kqqsyl/libde265-0_1.0.18-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 default-jre amd64 2:1.25-77 [1028 B] Fetched 1028 B in 0s (44.1 kB/s) dpkg-name: info: moved 'default-jre_2%3a1.25-77_amd64.deb' to '/srv/rebuilderd/tmp/tmp_ha9tcsk/default-jre_1.25-77_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 26.0.4-1 [54.6 kB] Fetched 54.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpycyqfo75/libgbm1_26.0.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtsan2 amd64 16-20260322-1 [2573 kB] Fetched 2573 kB in 0s (120 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8u1i5slj/libtsan2_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b1 [20.8 kB] Fetched 20.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpzz388hi3/libxau6_1.0.11-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.1.0+ds-1 [199 kB] Fetched 199 kB in 0s (19.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwy6bz49i/liblerc4_4.1.0+ds-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.341.0-1 [141 kB] Fetched 141 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyap658dr/libvulkan1_1.4.341.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2025.20260124-1 [4992 kB] Fetched 4992 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6w_x27_z/texlive-fonts-recommended_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Fetched 15.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2eywbxb_/libfile-which-perl_1.27-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libwebp-dev amd64 1.5.0-0.1+b1 [473 kB] Fetched 473 kB in 0s (38.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92xzm_px/libwebp-dev_1.5.0-0.1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.131-1 [65.6 kB] Fetched 65.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5soaxj1v/libdrm-intel1_2.4.131-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0xgti0jo/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.22.1-2+b1 [125 kB] Fetched 125 kB in 0s (1042 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqf6zp6ru/krb5-multidev_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libunwind8 amd64 1.8.1-0.4 [54.0 kB] Fetched 54.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpurm2qe6r/libunwind8_1.8.1-0.4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Fetched 776 kB in 0s (62.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplznxnl84/python3.13_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgprofng0 amd64 2.46-3 [820 kB] Fetched 820 kB in 0s (59.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1cb8av78/libgprofng0_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-16 [23.4 MB] Fetched 23.4 MB in 0s (168 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxv0q2wa/gcc-15-x86-64-linux-gnu_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc6 amd64 2.42-14 [1790 kB] Fetched 1790 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo4mb12ed/libc6_2.42-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gir1.2-harfbuzz-0.0 amd64 12.3.2-2+b2 [41.1 kB] Fetched 41.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzeq7phl/gir1.2-harfbuzz-0.0_12.3.2-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 at-spi2-common all 2.60.0-1 [171 kB] Fetched 171 kB in 0s (2645 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9cyfzduu/at-spi2-common_2.60.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1+b1 [11.2 kB] Fetched 11.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5nqozbes/libxshmfence1_1.3.3-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 adwaita-icon-theme all 50.0-1 [506 kB] Fetched 506 kB in 0s (9457 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmlcdbzej/adwaita-icon-theme_50.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.22.1-2+b1 [40.2 kB] Fetched 40.2 kB in 0s (527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_4ircua/libkadm5clnt-mit12_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2025.20260124-1 [23.1 MB] Fetched 23.1 MB in 0s (72.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ostrs_k/texlive-base_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Fetched 35.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpti5heod0/pkgconf-bin_2.5.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgif7 amd64 5.2.2-1+b2 [44.7 kB] Fetched 44.7 kB in 0s (2416 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfnay8l6x/libgif7_5.2.2-1+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-16 [12.8 MB] Fetched 12.8 MB in 0s (170 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5n5lss9z/gfortran-15-x86-64-linux-gnu_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b1 [66.1 kB] Fetched 66.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpfpag3_h4/libproc2-0_4.0.4-9+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b1 [330 kB] Fetched 330 kB in 0s (29.6 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpfdeih4za/libgmpxx4ldbl_6.3.0+dfsg-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openjdk-25-jre amd64 25.0.3~7ea-2 [204 kB] Fetched 204 kB in 0s (3639 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp652fy484/openjdk-25-jre_25.0.3~7ea-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-cairo0 amd64 12.3.2-2+b2 [27.8 kB] Fetched 27.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpecvv7a7p/libharfbuzz-cairo0_12.3.2-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Fetched 68.6 kB in 0s (2490 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa25bwnc0/libcommons-logging-java_1.3.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libffi-dev amd64 3.5.2-4 [64.6 kB] Fetched 64.6 kB in 0s (6405 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa8wf0b7q/libffi-dev_3.5.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Fetched 42.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcwiqyr3j/libfile-homedir-perl_1.006-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b4 [52.1 kB] Fetched 52.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjydnkzd7/libpciaccess0_0.17-3+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1+b1 [27.7 kB] Fetched 27.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp6zfp1_yj/libxrender1_0.9.12-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-5+b1 [70.4 kB] Fetched 70.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplccpyoo6/libpam0g_1.7.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgtk-3-0t64 amd64 3.24.52-1 [2920 kB] Fetched 2920 kB in 0s (34.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp94sjw9f5/libgtk-3-0t64_3.24.52-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 systemd amd64 260.1-1 [3299 kB] Fetched 3299 kB in 0s (126 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxi0kyvy5/systemd_260.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu60muzh0/gzip_1.13-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcairo-script-interpreter2 amd64 1.18.4-3 [60.1 kB] Fetched 60.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgph9ix8/libcairo-script-interpreter2_1.18.4-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 78.3-1 [11.1 MB] Fetched 11.1 MB in 0s (167 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk47cwxax/libicu-dev_78.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.56-1 [372 kB] Fetched 372 kB in 0s (34.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb51tuj4d/libpng-dev_1.6.56-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libctf-nobfd0 amd64 2.46-3 [160 kB] Fetched 160 kB in 0s (15.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplhes8wsy/libctf-nobfd0_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgomp1 amd64 16-20260322-1 [151 kB] Fetched 151 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp609x1s8q/libgomp1_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtiffxx6 amd64 4.7.1-2 [171 kB] Fetched 171 kB in 0s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_latep5z/libtiffxx6_4.7.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gir1.2-freedesktop-dev amd64 1.86.0-6 [52.5 kB] Fetched 52.5 kB in 0s (5198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmper07erus/gir1.2-freedesktop-dev_1.86.0-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7+b1 [2550 kB] Fetched 2550 kB in 0s (116 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_u3f1squ/liblapack3_3.12.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20251016-1 [93.6 kB] Fetched 93.6 kB in 0s (9320 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzmeoyplv/libedit2_3.1-20251016-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b2 [181 kB] Fetched 181 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf0djajpg/libxcb1-dev_1.17.0-2+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260409T202916Z forky/main amd64 libperl5.40 amd64 5.40.1-7 [4317 kB] Fetched 4317 kB in 0s (144 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplgzmidwb/libperl5.40_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-15-for-host amd64 15.2.0-16 [1132 B] Fetched 1132 B in 0s (54.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx1x802y_/cpp-15-for-host_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 2.42-2 [172 kB] Fetched 172 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxbx7bme/libblkid1_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1+b1 [78.9 kB] Fetched 78.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpigc0vowy/libgdbm6t64_1.26-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB] Fetched 93.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvmtxy44z/xtrans-dev_1.6.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-4 [21.7 kB] Fetched 21.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libxmuu1_2%3a1.1.3-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpo1zcjei6/libxmuu1_1.1.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Fetched 181 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfz8d6pv9/libreadline8t64_8.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 girepository-tools amd64 2.88.0-1 [132 kB] Fetched 132 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgs37rfcu/girepository-tools_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Fetched 33.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqmws5yr0/pkgconf_2.5.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9+b1 [883 kB] Fetched 883 kB in 0s (72.7 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp43i77lfp/procps_4.0.4-9+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.42-14 [1094 kB] Fetched 1094 kB in 0s (72.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprh67pcz3/libc-gconv-modules-extra_2.42-14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjansson4 amd64 2.14-2+b4 [40.1 kB] Fetched 40.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7hdt89lx/libjansson4_2.14-2+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Fetched 11.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe406jehr/hicolor-icon-theme_0.18-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.15.0-1 [94.5 kB] Fetched 94.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr6apf8b2/libnghttp3-dev_1.15.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [59.2 kB] Fetched 59.2 kB in 0s (1233 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfekhc3r2/libzzip-0-13t64_0.13.78+dfsg.1-0.2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjxl0.11 amd64 0.11.2-0.1 [1255 kB] Fetched 1255 kB in 0s (83.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk2ap3peg/libjxl0.11_0.11.2-0.1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxinerama1 amd64 2:1.1.4-3+b5 [16.0 kB] Fetched 16.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b5_amd64.deb' to '/srv/rebuilderd/tmp/tmp599g892n/libxinerama1_1.1.4-3+b5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (65.4 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmpko47svhn/automake_1.18.1-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.3-2 [1877 kB] Fetched 1877 kB in 0s (91.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgl0s63we/texinfo_7.3-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-2+b1 [58.1 kB] Fetched 58.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0eq3mpip/libdeflate-dev_1.23-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.57.1-1 [33.6 kB] Fetched 33.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx8etx11x/libpangocairo-1.0-0_1.57.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Fetched 32.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm2jg5a9o/libjbig0_2.1-6.1+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libatk-bridge2.0-0t64 amd64 2.60.0-1+b1 [67.2 kB] Fetched 67.2 kB in 0s (997 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp93vomnw4/libatk-bridge2.0-0t64_2.60.0-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-4 [183 kB] Fetched 183 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsymq5dj4/libelf1t64_0.194-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b1 [642 kB] Fetched 642 kB in 0s (54.4 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpz1y6amqr/libgmp-dev_6.3.0+dfsg-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4+b1 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq6j2y1kn/libidn2-0_2.3.8-4+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.23.2 [92.4 kB] Fetched 92.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5zd9_zzp/debianutils_5.23.2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dbus amd64 1.16.2-4 [72.4 kB] Fetched 72.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprejbixam/dbus_1.16.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b2 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57bwpz3l/libxcb-sync1_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b3 [25.5 kB] Fetched 25.5 kB in 0s (393 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplh7bkhj0/libpotrace0_1.16-2+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-3 [88.0 kB] Fetched 88.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2yjj33u5/libgl1_1.7.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-15 amd64 15.2.0-16 [1276 B] Fetched 1276 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprcd_4l4s/cpp-15_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Fetched 443 kB in 0s (40.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmi1igpei/grep_3.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.13-1 [903 kB] Fetched 903 kB in 0s (70.0 MB/s) dpkg-name: info: moved 'libx11-dev_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpfv90npqk/libx11-dev_1.8.13-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Fetched 101 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp73v9utkd/libtext-unidecode-perl_1.30-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 mpack amd64 1.6-19 [37.6 kB] Fetched 37.6 kB in 0s (316 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgimoyd7_/mpack_1.6-19_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 x11-xkb-utils amd64 7.7+9 [159 kB] Fetched 159 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkph04gs7/x11-xkb-utils_7.7+9_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsm-dev amd64 2:1.2.6-1+b1 [40.3 kB] Fetched 40.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libsm-dev_2%3a1.2.6-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpoj9w2n1r/libsm-dev_1.2.6-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-extra all 2025.20260124-1 [669 MB] Fetched 669 MB in 21s (32.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpids3tkt1/texlive-fonts-extra_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.5-1 [59.9 kB] Fetched 59.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpldebe1i3/libpsl5t64_0.21.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tcl8.6-dev amd64 8.6.17+dfsg-1+b1 [1040 kB] Fetched 1040 kB in 0s (72.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ylvhptr/tcl8.6-dev_8.6.17+dfsg-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (23.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnhbvg5b7/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsepol2 amd64 3.10-1 [307 kB] Fetched 307 kB in 0s (28.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6whqsyjg/libsepol2_3.10-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-2 [19.9 kB] Fetched 19.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpqes0d981/libxxf86vm1_1.1.4-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-icu0 amd64 12.3.2-2+b2 [13.5 kB] Fetched 13.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsxshzham/libharfbuzz-icu0_12.3.2-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjbig-dev amd64 2.1-6.1+b3 [31.4 kB] Fetched 31.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphe51j1xx/libjbig-dev_2.1-6.1+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-10 [539 kB] Fetched 539 kB in 0s (45.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp83frp5mv/libtool_2.5.4-10_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bison amd64 2:3.8.2+dfsg-1+b3 [1170 kB] Fetched 1170 kB in 0s (75.8 MB/s) dpkg-name: info: moved 'bison_2%3a3.8.2+dfsg-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmpmurkuzq1/bison_3.8.2+dfsg-1+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15-for-host amd64 15.2.0-16 [1020 B] Fetched 1020 B in 0s (41.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuct22iv8/gcc-15-for-host_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Fetched 54.6 kB in 0s (4205 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk1tf2h97/base-passwd_3.6.8_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 26.0.4-1 [10.4 MB] Fetched 10.4 MB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptwp3ry3y/mesa-libgallium_26.0.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-3+b1 [308 kB] Fetched 308 kB in 0s (22.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1her89_b/libzstd1_1.5.7+dfsg-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1.1 [350 kB] Fetched 350 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbznbx238/preview-latex-style_13.2-1.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b1 [116 kB] Fetched 116 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsrt377l1/libsharpyuv0_1.5.0-0.1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openjdk-25-jdk-headless amd64 25.0.3~7ea-2 [89.5 MB] Fetched 89.5 MB in 4s (24.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpko1ci9ht/openjdk-25-jdk-headless_25.0.3~7ea-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0053 [41.9 kB] Fetched 41.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnky69s9b/ucf_3.0053_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglib2.0-bin amd64 2.88.0-1 [114 kB] Fetched 114 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbklc8sxv/libglib2.0-bin_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-5 [5324 B] Fetched 5324 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpkggjowi_/cpp-x86-64-linux-gnu_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tk8.6-dev amd64 8.6.17-1+b1 [800 kB] Fetched 800 kB in 0s (9475 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpolgm_3yb/tk8.6-dev_8.6.17-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15-base amd64 15.2.0-16 [36.3 kB] Fetched 36.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvkbyp_m8/gcc-15-base_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 systemd-sysv amd64 260.1-1 [37.4 kB] Fetched 37.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo1nnmbh_/systemd-sysv_260.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Fetched 2267 kB in 0s (115 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zfdloga/python3.13-minimal_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b5 [20.3 kB] Fetched 20.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b5_amd64.deb' to '/srv/rebuilderd/tmp/tmp80dplfim/libxfixes3_6.0.0-2+b5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-7 [314 kB] Fetched 314 kB in 0s (22.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_innqd4/libxml-libxml-perl_2.0207+dfsg+really+2.0134-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.15.0-1 [67.2 kB] Fetched 67.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8a7oit1t/libnghttp3-9_1.15.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openjdk-25-jre-headless amd64 25.0.3~7ea-2 [53.7 MB] Fetched 53.7 MB in 2s (24.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7209fzpb/openjdk-25-jre-headless_25.0.3~7ea-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.30-1 [172 kB] Fetched 172 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpberqy197/libthai-data_0.1.30-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 diffutils amd64 1:3.12-1 [405 kB] Fetched 405 kB in 0s (0 B/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmps2ugy6yy/diffutils_3.12-1_amd64.deb' Downloading dependency 256 of 540: libtirpc-common:amd64=1.3.7+ds-1 Downloading dependency 257 of 540: libglycin-2-0:amd64=2.0.8-1 Downloading dependency 258 of 540: g++-x86-64-linux-gnu:amd64=4:15.2.0-5 Downloading dependency 259 of 540: libglx0:amd64=1.7.0-3 Downloading dependency 260 of 540: libkadm5srv-mit12:amd64=1.22.1-2+b1 Downloading dependency 261 of 540: groff-base:amd64=1.23.0-10 Downloading dependency 262 of 540: libasound2-data:amd64=1.2.15.3-1 Downloading dependency 263 of 540: libde265-0:amd64=1.0.18-1 Downloading dependency 264 of 540: default-jre:amd64=2:1.25-77 Downloading dependency 265 of 540: libgbm1:amd64=26.0.4-1 Downloading dependency 266 of 540: libtsan2:amd64=16-20260322-1 Downloading dependency 267 of 540: libxau6:amd64=1:1.0.11-1+b1 Downloading dependency 268 of 540: liblerc4:amd64=4.1.0+ds-1 Downloading dependency 269 of 540: libvulkan1:amd64=1.4.341.0-1 Downloading dependency 270 of 540: texlive-fonts-recommended:amd64=2025.20260124-1 Downloading dependency 271 of 540: libfile-which-perl:amd64=1.27-2 Downloading dependency 272 of 540: libwebp-dev:amd64=1.5.0-0.1+b1 Downloading dependency 273 of 540: libdrm-intel1:amd64=2.4.131-1 Downloading dependency 274 of 540: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 275 of 540: krb5-multidev:amd64=1.22.1-2+b1 Downloading dependency 276 of 540: libunwind8:amd64=1.8.1-0.4 Downloading dependency 277 of 540: python3.13:amd64=3.13.12-1 Downloading dependency 278 of 540: libgprofng0:amd64=2.46-3 Downloading dependency 279 of 540: gcc-15-x86-64-linux-gnu:amd64=15.2.0-16 Downloading dependency 280 of 540: libc6:amd64=2.42-14 Downloading dependency 281 of 540: gir1.2-harfbuzz-0.0:amd64=12.3.2-2+b2 Downloading dependency 282 of 540: at-spi2-common:amd64=2.60.0-1 Downloading dependency 283 of 540: libxshmfence1:amd64=1.3.3-1+b1 Downloading dependency 284 of 540: adwaita-icon-theme:amd64=50.0-1 Downloading dependency 285 of 540: libkadm5clnt-mit12:amd64=1.22.1-2+b1 Downloading dependency 286 of 540: texlive-base:amd64=2025.20260124-1 Downloading dependency 287 of 540: pkgconf-bin:amd64=2.5.1-4 Downloading dependency 288 of 540: libgif7:amd64=5.2.2-1+b2 Downloading dependency 289 of 540: gfortran-15-x86-64-linux-gnu:amd64=15.2.0-16 Downloading dependency 290 of 540: libproc2-0:amd64=2:4.0.4-9+b1 Downloading dependency 291 of 540: libgmpxx4ldbl:amd64=2:6.3.0+dfsg-5+b1 Downloading dependency 292 of 540: openjdk-25-jre:amd64=25.0.3~7ea-2 Downloading dependency 293 of 540: libharfbuzz-cairo0:amd64=12.3.2-2+b2 Downloading dependency 294 of 540: libcommons-logging-java:amd64=1.3.0-2 Downloading dependency 295 of 540: libffi-dev:amd64=3.5.2-4 Downloading dependency 296 of 540: libfile-homedir-perl:amd64=1.006-2 Downloading dependency 297 of 540: libpciaccess0:amd64=0.17-3+b4 Downloading dependency 298 of 540: libxrender1:amd64=1:0.9.12-1+b1 Downloading dependency 299 of 540: libpam0g:amd64=1.7.0-5+b1 Downloading dependency 300 of 540: libgtk-3-0t64:amd64=3.24.52-1 Downloading dependency 301 of 540: systemd:amd64=260.1-1 Downloading dependency 302 of 540: gzip:amd64=1.13-1 Downloading dependency 303 of 540: libcairo-script-interpreter2:amd64=1.18.4-3 Downloading dependency 304 of 540: libicu-dev:amd64=78.3-1 Downloading dependency 305 of 540: libpng-dev:amd64=1.6.56-1 Downloading dependency 306 of 540: libctf-nobfd0:amd64=2.46-3 Downloading dependency 307 of 540: libgomp1:amd64=16-20260322-1 Downloading dependency 308 of 540: libtiffxx6:amd64=4.7.1-2 Downloading dependency 309 of 540: gir1.2-freedesktop-dev:amd64=1.86.0-6 Downloading dependency 310 of 540: liblapack3:amd64=3.12.1-7+b1 Downloading dependency 311 of 540: libedit2:amd64=3.1-20251016-1 Downloading dependency 312 of 540: libxcb1-dev:amd64=1.17.0-2+b2 Downloading dependency 313 of 540: libperl5.40:amd64=5.40.1-7 Downloading dependency 314 of 540: cpp-15-for-host:amd64=15.2.0-16 Downloading dependency 315 of 540: libblkid1:amd64=2.42-2 Downloading dependency 316 of 540: libgdbm6t64:amd64=1.26-1+b1 Downloading dependency 317 of 540: xtrans-dev:amd64=1.6.0-1 Downloading dependency 318 of 540: libxmuu1:amd64=2:1.1.3-4 Downloading dependency 319 of 540: libreadline8t64:amd64=8.3-4 Downloading dependency 320 of 540: girepository-tools:amd64=2.88.0-1 Downloading dependency 321 of 540: pkgconf:amd64=2.5.1-4 Downloading dependency 322 of 540: procps:amd64=2:4.0.4-9+b1 Downloading dependency 323 of 540: libc-gconv-modules-extra:amd64=2.42-14 Downloading dependency 324 of 540: libjansson4:amd64=2.14-2+b4 Downloading dependency 325 of 540: 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dependency 372 of 540: gcc-15-base:amd64=15.2.0-16 Downloading dependency 373 of 540: systemd-sysv:amd64=260.1-1 Downloading dependency 374 of 540: python3.13-minimal:amd64=3.13.12-1 Downloading dependency 375 of 540: libxfixes3:amd64=1:6.0.0-2+b5 Downloading dependency 376 of 540: libxml-libxml-perl:amd64=2.0207+dfsg+really+2.0134-7 Downloading dependency 377 of 540: libnghttp3-9:amd64=1.15.0-1 Downloading dependency 378 of 540: openjdk-25-jre-headless:amd64=25.0.3~7ea-2 Downloading dependency 379 of 540: libthai-data:amd64=0.1.30-1 Downloading dependency 380 of 540: diffutils:amd64=1:3.12-1 Downloading dependency 381 of 540: libncursesw6:amd64=6.6+20251231-1 Get:1 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Fetched 137 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbqb3u_zl/libncursesw6_6.6+20251231-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gir1.2-pango-1.0 amd64 1.57.1-1 [33.6 kB] Fetched 33.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64b4rrtm/gir1.2-pango-1.0_1.57.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Fetched 758 kB in 0s (64.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp00qsn7np/shared-mime-info_2.4-5+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-subset0 amd64 12.3.2-2+b2 [574 kB] Fetched 574 kB in 0s (54.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr4mqtywx/libharfbuzz-subset0_12.3.2-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpango1.0-dev amd64 1.57.1-1 [151 kB] Fetched 151 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfhdl2vc1/libpango1.0-dev_1.57.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 2.42-2 [1222 kB] Fetched 1222 kB in 0s (85.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx54mw76c/util-linux_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b1 [259 kB] Fetched 259 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjxi6wb29/libpixman-1-0_0.46.4-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.19.0-3 [532 kB] Fetched 532 kB in 0s (50.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjpnasj5m/libcurl4-openssl-dev_8.19.0-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 2.42-2 [32.7 kB] Fetched 32.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpndnr81ir/libuuid1_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.68.1-1 [112 kB] Fetched 112 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfmzo5le/libnghttp2-dev_1.68.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhogweed6t64 amd64 3.10.2-1+b1 [335 kB] Fetched 335 kB in 0s (2041 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcz1fb3yk/libhogweed6t64_3.10.2-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-5+b1 [179 kB] Fetched 179 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0gkbsrw4/libpam-modules_1.7.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.24.2-1+b1 [608 kB] Fetched 608 kB in 0s (3754 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqbg_aflz/libunbound8_1.24.2-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxfont2 amd64 1:2.0.6-2 [133 kB] Fetched 133 kB in 0s (0 B/s) dpkg-name: info: moved 'libxfont2_1%3a2.0.6-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpjo8_iawc/libxfont2_2.0.6-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260409T202916Z forky/main amd64 perl-base amd64 5.40.1-7 [1679 kB] Fetched 1679 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnq0j3op5/perl-base_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl0x2_3ta/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (121 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3gpkpduz/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Fetched 840 kB in 0s (72.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpedn6kcop/fonts-dejavu-core_2.37-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6soxtj_3/dh-autoreconf_22_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1+b1 [114 kB] Fetched 114 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xrri0um/libwebpdemux2_1.5.0-0.1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Fetched 57.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9lbgq1sc/liblzo2-2_2.10-3+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.3-1+b1 [564 kB] Fetched 564 kB in 0s (54.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpad0lxej7/libdav1d7_1.5.3-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2+b1 [336 kB] Fetched 336 kB in 0s (2595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxxtyzl28/libkrb5-3_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Fetched 1469 kB in 0s (69.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1swfz5s5/man-db_2.13.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Fetched 4540 kB in 0s (53.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq3pcd4w1/fonts-lmodern_2.005-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.27-2 [664 kB] Fetched 664 kB in 0s (61.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcs7qhpc6/libisl23_0.27-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bash-completion all 1:2.16.0-8 [319 kB] Fetched 319 kB in 0s (0 B/s) dpkg-name: info: moved 'bash-completion_1%3a2.16.0-8_all.deb' to '/srv/rebuilderd/tmp/tmpjd_mr1mn/bash-completion_2.16.0-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnspr4 amd64 2:4.38.2-1 [111 kB] Fetched 111 kB in 0s (0 B/s) dpkg-name: info: moved 'libnspr4_2%3a4.38.2-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp7lr0p_1i/libnspr4_4.38.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.2+dfsg-0.1 [641 kB] Fetched 641 kB in 0s (54.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxr97wacn/libxml2-16_2.15.2+dfsg-0.1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-5 [26.7 kB] Fetched 26.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxh3oz01e/libfribidi0_1.0.16-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Fetched 144 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78s1kft4/libxcb1_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptfovnwmk/build-essential_12.12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-5 [1280 B] Fetched 1280 B in 0s (0 B/s) dpkg-name: info: moved 'gfortran-x86-64-linux-gnu_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpdnf7ze6g/gfortran-x86-64-linux-gnu_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libseccomp2 amd64 2.6.0-2+b1 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaopnq1z4/libseccomp2_2.6.0-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1+b1 [8646 kB] Fetched 8646 kB in 0s (174 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkfwvdrvy/libz3-4_4.13.3-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 java-common all 0.77 [6620 B] Fetched 6620 B in 0s (230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprjczs8cj/java-common_0.77_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Fetched 8808 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjs_amw_p/libtext-wrapi18n-perl_0.06-10_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 default-jdk amd64 2:1.25-77 [1040 B] Fetched 1040 B in 0s (48.3 kB/s) dpkg-name: info: moved 'default-jdk_2%3a1.25-77_amd64.deb' to '/srv/rebuilderd/tmp/tmpxq8pzm3y/default-jdk_1.25-77_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9532 B] Fetched 9532 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yj7i3hl/libtext-charwidth-perl_0.04-11+b5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gir1.2-freedesktop amd64 1.86.0-6 [61.4 kB] Fetched 61.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfh33zxbe/gir1.2-freedesktop_1.86.0-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Fetched 62.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp83r2svyb/t1utils_1.41-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 native-architecture all 0.2.6 [2264 B] Fetched 2264 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpajww4ojw/native-architecture_0.2.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libice-dev amd64 2:1.1.1-1+b1 [75.3 kB] Fetched 75.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libice-dev_2%3a1.1.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmprwc6byu6/libice-dev_1.1.1-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8f8mmex3/hostname_3.25_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Fetched 82.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37gbwqou/libtirpc3t64_1.3.7+ds-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6+b1 [33.6 kB] Fetched 33.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpykhc5wbf/libbz2-dev_1.0.8-6+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbsqaclx_/autotools-dev_20240727.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxrandr2 amd64 2:1.5.4-1+b4 [36.5 kB] Fetched 36.5 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrandr2_2%3a1.5.4-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmp63lkuotq/libxrandr2_1.5.4-1+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-2 [770 kB] Fetched 770 kB in 0s (67.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcq74_ljd/autopoint_0.23.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b4 [105 kB] Fetched 105 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext-dev_2%3a1.3.4-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmpjp28og5l/libxext-dev_1.3.4-1+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Fetched 50.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmp6adka81p/libxext6_1.3.4-1+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.46-1+b1 [847 kB] Fetched 847 kB in 0s (72.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplrqfdzfp/libpcre2-dev_10.46-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gir1.2-glib-2.0-dev amd64 2.88.0-1 [902 kB] Fetched 902 kB in 0s (77.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqidun9g/gir1.2-glib-2.0-dev_2.88.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260409T202916Z forky/main amd64 perl amd64 5.40.1-7 [267 kB] Fetched 267 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4udn0te7/perl_5.40.1-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtiff-dev amd64 4.7.1-2 [503 kB] Fetched 503 kB in 0s (45.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvocavs5b/libtiff-dev_4.7.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7+b1 [209 kB] Fetched 209 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57mc_uwx/libblas3_3.12.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gfortran-15-for-host amd64 15.2.0-16 [1080 B] Fetched 1080 B in 0s (42.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkl3rynrs/gfortran-15-for-host_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgirepository-2.0-0 amd64 2.88.0-1 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpspisgnw1/libgirepository-2.0-0_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.5.2-4 [23.0 kB] Fetched 23.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpo24fssno/libattr1_2.5.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit1 amd64 1:4.1.2-1+b1 [60.2 kB] Fetched 60.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpjo757hs0/libaudit1_4.1.2-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.12-3 [1520 kB] Fetched 1520 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzr18tfs/libgnutls30t64_3.8.12-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.17-1 [163 kB] Fetched 163 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2dzatklr/liblcms2-2_2.17-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev amd64 2.88.0-1 [38.2 kB] Fetched 38.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpko3s6386/libglib2.0-dev_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1+b1 [336 kB] Fetched 336 kB in 0s (31.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphknzhdcq/libwebp7_1.5.0-0.1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 linux-libc-dev all 6.19.11-1 [1972 kB] Fetched 1972 kB in 0s (114 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkeq4pcdt/linux-libc-dev_6.19.11-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.3-2 [705 kB] Fetched 705 kB in 0s (64.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1r06ylhb/texinfo-lib_7.3-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Fetched 20.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9uq4up9m/libxml-sax-base-perl_1.09-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 mount amd64 2.42-2 [163 kB] Fetched 163 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuz24mioq/mount_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2+b1 [31.0 kB] Fetched 31.0 kB in 0s (531 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9kedn4cw/libkrb5support0_1.22.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Fetched 217 kB in 0s (0 B/s) dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmpnazi7w_t/x11-common_7.7+26_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxrender-dev amd64 1:0.9.12-1+b1 [38.8 kB] Fetched 38.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrender-dev_1%3a0.9.12-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp3y681rdo/libxrender-dev_0.9.12-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dbus-session-bus-common all 1.16.2-4 [53.1 kB] Fetched 53.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_3z8w3l9/dbus-session-bus-common_1.16.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-2+b1 [132 kB] Fetched 132 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxnsxp5bn/libbsd0_0.12.2-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Fetched 72.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.1.5-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp6kxtb59r/libjpeg-dev_2.1.5-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 lmodern all 2.005-1 [9480 kB] Fetched 9480 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpydkj53lv/lmodern_2.005-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6+b1 [40.4 kB] Fetched 40.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkk8_yd1q/libbz2-1.0_1.0.8-6+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1+b1 [23.9 kB] Fetched 23.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau-dev_1%3a1.0.11-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpgrfnqw2c/libxau-dev_1.0.11-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-5+b2 [8670 kB] Fetched 8670 kB in 0s (44.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpog8i9r4d/texlive-binaries_2025.20250727.75242+ds-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 pango1.0-tools amd64 1.57.1-1 [38.8 kB] Fetched 38.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa78tya45/pango1.0-tools_1.57.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Fetched 19.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps701yy3v/libcom-err2_1.47.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.46-1+b1 [268 kB] Fetched 268 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplb2mwde1/libpcre2-32-0_10.46-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.6.1-3 [314 kB] Fetched 314 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjw56g42x/openssl-provider-legacy_3.6.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf2.0-common all 2.44.6+dfsg-2 [313 kB] Fetched 313 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvbq_ue7j/libgdk-pixbuf2.0-common_2.44.6+dfsg-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B] Fetched 9784 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaop2e8i0/libkeyutils1_1.6.3-6+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-4 [59.4 kB] Fetched 59.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libxmu6_2%3a1.1.3-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp8jbzzh0m/libxmu6_1.1.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-16 [12.1 MB] Fetched 12.1 MB in 0s (184 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp42kbybbu/cpp-15-x86-64-linux-gnu_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Fetched 17.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libxss1_1%3a1.2.3-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmp79t48182/libxss1_1.2.3-1+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhwy1t64 amd64 1.3.0-2 [709 kB] Fetched 709 kB in 0s (64.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxe4mwxnv/libhwy1t64_1.3.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.131-1 [9168 B] Fetched 9168 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzk7usm4d/libdrm-common_2.4.131-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-18 [45.2 kB] Fetched 45.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqd919d_j/libavahi-common3_0.8-18_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnss3 amd64 2:3.121-1 [1428 kB] Fetched 1428 kB in 0s (28.5 MB/s) dpkg-name: info: moved 'libnss3_2%3a3.121-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpb3zsir7p/libnss3_3.121-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 26.0.4-1 [125 kB] Fetched 125 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe87skkmz/libglx-mesa0_26.0.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1+b1 [799 kB] Fetched 799 kB in 0s (66.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzb_2z44j/libtk8.6_8.6.17-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.6+20251231-1 [354 kB] Fetched 354 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6k2vo58g/libtinfo6_6.6+20251231-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Fetched 93.3 kB in 0s (2050 kB/s) dpkg-name: info: moved 'xfonts-utils_1%3a7.7+7_amd64.deb' to '/srv/rebuilderd/tmp/tmp3b8pj4v7/xfonts-utils_7.7+7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16-20260322-1 [886 kB] Fetched 886 kB in 0s (75.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpafj8kisu/libgfortran5_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblsan0 amd64 16-20260322-1 [1280 kB] Fetched 1280 kB in 0s (66.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvkitxcyc/liblsan0_16-20260322-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-for-host amd64 4:15.2.0-5 [5396 B] Fetched 5396 B in 0s (183 kB/s) dpkg-name: info: moved 'cpp-for-host_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp4bs4qy00/cpp-for-host_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b2 [184 kB] Fetched 184 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1psc4dy/libevent-2.1-7t64_2.1.12-stable-10+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 glycin-loaders amd64 2.0.8-1 [2781 kB] Fetched 2781 kB in 0s (125 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzxbatvr1/glycin-loaders_2.0.8-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdebconfclient0 amd64 0.282+b2 [11.2 kB] Fetched 11.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1760d1s8/libdebconfclient0_0.282+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b1 [66.8 kB] Fetched 66.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libice6_2%3a1.1.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmppwdvmlzj/libice6_1.1.1-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.12-3 [475 kB] Fetched 475 kB in 0s (44.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjmkgls_i/libgnutls-dane0t64_3.8.12-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gir1.2-glib-2.0 amd64 2.88.0-1 [179 kB] Fetched 179 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplnvcu505/gir1.2-glib-2.0_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.3.2-3 [32.7 kB] Fetched 32.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphbtg1u3l/libacl1_2.3.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-2 [79.8 kB] Fetched 79.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxi6_2%3a1.8.2-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdeclamm8/libxi6_1.8.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-2 [1684 kB] Fetched 1684 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp49wkmoq4/gettext_0.23.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libthai-dev amd64 0.1.30-1 [24.5 kB] Fetched 24.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2nz0rfa0/libthai-dev_0.1.30-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15 amd64 15.2.0-16 [540 kB] Fetched 540 kB in 0s (51.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl3wrahe9/gcc-15_15.2.0-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [195 kB] Fetched 195 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaarxksza/libldap2_2.6.10+dfsg-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-13 [75.9 kB] Fetched 75.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmsunhz_v/libgraphite2-3_1.3.14-13_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfontconfig-dev amd64 2.17.1-5 [155 kB] Fetched 155 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q8tvdhs/libfontconfig-dev_2.17.1-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 patch amd64 2.8-2 [134 kB] Fetched 134 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw5q9xw3w/patch_2.8-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.14-1 [39.6 kB] Fetched 39.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfw_zo2tu/libdatrie1_0.2.14-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-luatex all 2025.20260124-1 [36.9 MB] Fetched 36.9 MB in 1s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23_oy4o9/texlive-luatex_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcap-ng0 amd64 0.9.2-1 [16.5 kB] Fetched 16.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp38kfg304/libcap-ng0_0.9.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Fetched 17.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpssi224db/libsasl2-modules-db_2.1.28+dfsg1-11_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-18 [49.2 kB] Fetched 49.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgujztwv3/libavahi-client3_0.8-18_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xserver-common all 2:21.1.21-1 [2435 kB] Fetched 2435 kB in 0s (124 MB/s) dpkg-name: info: moved 'xserver-common_2%3a21.1.21-1_all.deb' to '/srv/rebuilderd/tmp/tmpg37ys5c0/xserver-common_21.1.21-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.21.0-1 [25.9 kB] Fetched 25.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpho59xzvh/libngtcp2-crypto-ossl0_1.21.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdpkg-perl all 1.23.7 [669 kB] Fetched 669 kB in 0s (59.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5jofiphl/libdpkg-perl_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0diq1m0p/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libatspi2.0-0t64 amd64 2.60.0-1+b1 [81.1 kB] Fetched 81.1 kB in 0s (2931 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2tfp0hdv/libatspi2.0-0t64_2.60.0-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Fetched 1974 kB in 0s (78.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24ppk874/libpython3.13-stdlib_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b2 [117 kB] Fetched 117 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwkm84trn/libxcb-randr0_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0-dev amd64 1.17.0-2+b2 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprf50fsu1/libxcb-shm0-dev_1.17.0-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dbus-bin amd64 1.16.2-4 [80.9 kB] Fetched 80.9 kB in 0s (7387 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_0oj98a/dbus-bin_1.16.2-4_amd64.deb' Downloading dependency 382 of 540: gir1.2-pango-1.0:amd64=1.57.1-1 Downloading dependency 383 of 540: shared-mime-info:amd64=2.4-5+b3 Downloading dependency 384 of 540: libharfbuzz-subset0:amd64=12.3.2-2+b2 Downloading dependency 385 of 540: libpango1.0-dev:amd64=1.57.1-1 Downloading dependency 386 of 540: util-linux:amd64=2.42-2 Downloading dependency 387 of 540: libpixman-1-0:amd64=0.46.4-1+b1 Downloading dependency 388 of 540: libcurl4-openssl-dev:amd64=8.19.0-3 Downloading dependency 389 of 540: libuuid1:amd64=2.42-2 Downloading dependency 390 of 540: libnghttp2-dev:amd64=1.68.1-1 Downloading dependency 391 of 540: libhogweed6t64:amd64=3.10.2-1+b1 Downloading dependency 392 of 540: libpam-modules:amd64=1.7.0-5+b1 Downloading dependency 393 of 540: libunbound8:amd64=1.24.2-1+b1 Downloading dependency 394 of 540: libxfont2:amd64=1:2.0.6-2 Downloading dependency 395 of 540: perl-base:amd64=5.40.1-7 Downloading dependency 396 of 540: libfile-stripnondeterminism-perl:amd64=1.15.0-1 Downloading dependency 397 of 540: perl-modules-5.40:amd64=5.40.1-7 Downloading dependency 398 of 540: fonts-dejavu-core:amd64=2.37-8 Downloading dependency 399 of 540: dh-autoreconf:amd64=22 Downloading dependency 400 of 540: libwebpdemux2:amd64=1.5.0-0.1+b1 Downloading dependency 401 of 540: liblzo2-2:amd64=2.10-3+b2 Downloading dependency 402 of 540: libdav1d7:amd64=1.5.3-1+b1 Downloading dependency 403 of 540: libkrb5-3:amd64=1.22.1-2+b1 Downloading dependency 404 of 540: man-db:amd64=2.13.1-1 Downloading dependency 405 of 540: fonts-lmodern:amd64=2.005-1 Downloading dependency 406 of 540: libisl23:amd64=0.27-2 Downloading dependency 407 of 540: bash-completion:amd64=1:2.16.0-8 Downloading dependency 408 of 540: libnspr4:amd64=2:4.38.2-1 Downloading dependency 409 of 540: libxml2-16:amd64=2.15.2+dfsg-0.1 Downloading dependency 410 of 540: libfribidi0:amd64=1.0.16-5 Downloading dependency 411 of 540: libxcb1:amd64=1.17.0-2+b2 Downloading dependency 412 of 540: build-essential:amd64=12.12 Downloading dependency 413 of 540: gfortran-x86-64-linux-gnu:amd64=4:15.2.0-5 Downloading dependency 414 of 540: libseccomp2:amd64=2.6.0-2+b1 Downloading dependency 415 of 540: libz3-4:amd64=4.13.3-1+b1 Downloading dependency 416 of 540: java-common:amd64=0.77 Downloading dependency 417 of 540: libtext-wrapi18n-perl:amd64=0.06-10 Downloading dependency 418 of 540: default-jdk:amd64=2:1.25-77 Downloading dependency 419 of 540: libtext-charwidth-perl:amd64=0.04-11+b5 Downloading dependency 420 of 540: gir1.2-freedesktop:amd64=1.86.0-6 Downloading dependency 421 of 540: t1utils:amd64=1.41-4 Downloading dependency 422 of 540: native-architecture:amd64=0.2.6 Downloading dependency 423 of 540: libice-dev:amd64=2:1.1.1-1+b1 Downloading dependency 424 of 540: hostname:amd64=3.25 Downloading dependency 425 of 540: libtirpc3t64:amd64=1.3.7+ds-1 Downloading dependency 426 of 540: libbz2-dev:amd64=1.0.8-6+b1 Downloading dependency 427 of 540: autotools-dev:amd64=20240727.1 Downloading dependency 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Downloading dependency 444 of 540: libwebp7:amd64=1.5.0-0.1+b1 Downloading dependency 445 of 540: linux-libc-dev:amd64=6.19.11-1 Downloading dependency 446 of 540: texinfo-lib:amd64=7.3-2 Downloading dependency 447 of 540: libxml-sax-base-perl:amd64=1.09-3 Downloading dependency 448 of 540: mount:amd64=2.42-2 Downloading dependency 449 of 540: libkrb5support0:amd64=1.22.1-2+b1 Downloading dependency 450 of 540: x11-common:amd64=1:7.7+26 Downloading dependency 451 of 540: libxrender-dev:amd64=1:0.9.12-1+b1 Downloading dependency 452 of 540: dbus-session-bus-common:amd64=1.16.2-4 Downloading dependency 453 of 540: libbsd0:amd64=0.12.2-2+b1 Downloading dependency 454 of 540: libjpeg-dev:amd64=1:2.1.5-4 Downloading dependency 455 of 540: lmodern:amd64=2.005-1 Downloading dependency 456 of 540: libbz2-1.0:amd64=1.0.8-6+b1 Downloading dependency 457 of 540: libxau-dev:amd64=1:1.0.11-1+b1 Downloading dependency 458 of 540: texlive-binaries:amd64=2025.20250727.75242+ds-5+b2 Downloading dependency 459 of 540: pango1.0-tools:amd64=1.57.1-1 Downloading dependency 460 of 540: libcom-err2:amd64=1.47.4-1 Downloading dependency 461 of 540: libpcre2-32-0:amd64=10.46-1+b1 Downloading dependency 462 of 540: openssl-provider-legacy:amd64=3.6.1-3 Downloading dependency 463 of 540: libgdk-pixbuf2.0-common:amd64=2.44.6+dfsg-2 Downloading dependency 464 of 540: libkeyutils1:amd64=1.6.3-6+b1 Downloading dependency 465 of 540: libxmu6:amd64=2:1.1.3-4 Downloading dependency 466 of 540: cpp-15-x86-64-linux-gnu:amd64=15.2.0-16 Downloading dependency 467 of 540: libxss1:amd64=1:1.2.3-1+b4 Downloading dependency 468 of 540: libhwy1t64:amd64=1.3.0-2 Downloading dependency 469 of 540: libdrm-common:amd64=2.4.131-1 Downloading dependency 470 of 540: libavahi-common3:amd64=0.8-18 Downloading dependency 471 of 540: libnss3:amd64=2:3.121-1 Downloading dependency 472 of 540: libglx-mesa0:amd64=26.0.4-1 Downloading dependency 473 of 540: libtk8.6:amd64=8.6.17-1+b1 Downloading dependency 474 of 540: libtinfo6:amd64=6.6+20251231-1 Downloading dependency 475 of 540: xfonts-utils:amd64=1:7.7+7 Downloading dependency 476 of 540: libgfortran5:amd64=16-20260322-1 Downloading dependency 477 of 540: liblsan0:amd64=16-20260322-1 Downloading dependency 478 of 540: cpp-for-host:amd64=4:15.2.0-5 Downloading dependency 479 of 540: libevent-2.1-7t64:amd64=2.1.12-stable-10+b2 Downloading dependency 480 of 540: glycin-loaders:amd64=2.0.8-1 Downloading dependency 481 of 540: libdebconfclient0:amd64=0.282+b2 Downloading dependency 482 of 540: libice6:amd64=2:1.1.1-1+b1 Downloading dependency 483 of 540: libgnutls-dane0t64:amd64=3.8.12-3 Downloading dependency 484 of 540: gir1.2-glib-2.0:amd64=2.88.0-1 Downloading dependency 485 of 540: libacl1:amd64=2.3.2-3 Downloading dependency 486 of 540: libxi6:amd64=2:1.8.2-2 Downloading dependency 487 of 540: gettext:amd64=0.23.2-2 Downloading dependency 488 of 540: libthai-dev:amd64=0.1.30-1 Downloading dependency 489 of 540: gcc-15:amd64=15.2.0-16 Downloading dependency 490 of 540: libldap2:amd64=2.6.10+dfsg-1+b1 Downloading dependency 491 of 540: libgraphite2-3:amd64=1.3.14-13 Downloading dependency 492 of 540: libfontconfig-dev:amd64=2.17.1-5 Downloading dependency 493 of 540: patch:amd64=2.8-2 Downloading dependency 494 of 540: libdatrie1:amd64=0.2.14-1 Downloading dependency 495 of 540: texlive-luatex:amd64=2025.20260124-1 Downloading dependency 496 of 540: libcap-ng0:amd64=0.9.2-1 Downloading dependency 497 of 540: libsasl2-modules-db:amd64=2.1.28+dfsg1-11 Downloading dependency 498 of 540: libavahi-client3:amd64=0.8-18 Downloading dependency 499 of 540: xserver-common:amd64=2:21.1.21-1 Downloading dependency 500 of 540: libngtcp2-crypto-ossl0:amd64=1.21.0-1 Downloading dependency 501 of 540: libdpkg-perl:amd64=1.23.7 Downloading dependency 502 of 540: po-debconf:amd64=1.0.22 Downloading dependency 503 of 540: libatspi2.0-0t64:amd64=2.60.0-1+b1 Downloading dependency 504 of 540: libpython3.13-stdlib:amd64=3.13.12-1 Downloading dependency 505 of 540: libxcb-randr0:amd64=1.17.0-2+b2 Downloading dependency 506 of 540: libxcb-shm0-dev:amd64=1.17.0-2+b2 Downloading dependency 507 of 540: dbus-bin:amd64=1.16.2-4 Downloading dependency 508 of 540: libwebpdecoder3:amd64=1.5.0-0.1+b1Get:1 http://deb.debian.org/debian unstable/main amd64 libwebpdecoder3 amd64 1.5.0-0.1+b1 [224 kB] Fetched 224 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpemj7kurh/libwebpdecoder3_1.5.0-0.1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-4 [180 kB] Fetched 180 kB in 0s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaprq1bld/libdbus-1-3_1.16.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxcomposite1 amd64 1:0.4.6-1+b1 [16.6 kB] Fetched 16.6 kB in 0s (0 B/s) dpkg-name: info: moved 'libxcomposite1_1%3a0.4.6-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp8eangkmc/libxcomposite1_0.4.6-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 uuid-dev amd64 2.42-2 [44.1 kB] Fetched 44.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpog_zj9j6/uuid-dev_2.42-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Fetched 23.9 kB in 0s (0 B/s) dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.12.1-1_all.deb' to '/srv/rebuilderd/tmp/tmp5xjogx19/xorg-sgml-doctools_1.12.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.6.1-3 [1514 kB] Fetched 1514 kB in 0s (94.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppai583jl/openssl_3.6.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [24.5 kB] Fetched 24.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfu_a83e1/libdrm-amdgpu1_2.4.131-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.6.1-3 [3016 kB] Fetched 3016 kB in 0s (123 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqmd0jn_u/libssl-dev_3.6.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.88.0-1 [37.4 kB] Fetched 37.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp43dqapzq/libglib2.0-dev-bin_2.88.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.46-1+b1 [64.3 kB] Fetched 64.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxrbq0au/libpcre2-posix3_10.46-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.26.2-2 [223 kB] Fetched 223 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvx76mncv/libp11-kit-dev_0.26.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-5+b2 [62.1 kB] Fetched 62.1 kB in 0s (3469 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ytwl7jl/libsynctex2_2025.20250727.75242+ds-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-5+b1 [49.8 kB] Fetched 49.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_lrb16y/libpam-modules-bin_1.7.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.6-1 [60.3 kB] Fetched 60.3 kB in 0s (730 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0xfouid/librtmp1_2.6-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.47-1 [835 kB] Fetched 835 kB in 0s (65.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp55_jsjo6/xkb-data_2.47-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Fetched 35.9 kB in 0s (0 B/s) dpkg-name: info: moved 'xauth_1%3a1.1.2-1.1_amd64.deb' to '/srv/rebuilderd/tmp/tmp6mh89_qe/xauth_1.1.2-1.1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Fetched 729 kB in 0s (64.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyp0k37pb/libmpfr6_4.2.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2+b1 [49.5 kB] Fetched 49.5 kB in 0s (486 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp200otdek/libpipeline1_1.5.8-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.5-1 [169 kB] Fetched 169 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdll6elb/libexpat1-dev_2.7.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-4 [25.2 kB] Fetched 25.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiw000vjx/libffi8_3.5.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2025.20260124-1 [23.6 MB] Fetched 23.6 MB in 1s (42.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwbazi_3h/texlive-pictures_2025.20260124-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.21.2-4 [19.5 kB] Fetched 19.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc2wpu82b/libheif-plugin-dav1d_1.21.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.5-1 [80.5 kB] Fetched 80.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwgozums3/libpsl-dev_0.21.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Fetched 43.8 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.46-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpxbye5bg6/file_5.46-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-gobject0 amd64 12.3.2-2+b2 [31.1 kB] Fetched 31.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2wgbp9je/libharfbuzz-gobject0_12.3.2-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:15.2.0-5 [5160 B] Fetched 5160 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpung98h2v/gcc_15.2.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.3-1 [369 kB] Fetched 369 kB in 0s (30.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_nk_6w0n/liblzma-dev_5.8.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libglib2.0-data all 2.88.0-1 [1289 kB] Fetched 1289 kB in 0s (79.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpilh0y95s/libglib2.0-data_2.88.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.3+dfsg-1 [493 kB] Fetched 493 kB in 0s (41.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0i5k2qy/libfreetype6_2.14.3+dfsg-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b3 [16.5 kB] Fetched 16.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtc79vwa/libpaper-utils_2.2.5-0.3+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxtst6 amd64 2:1.2.5-1+b1 [26.2 kB] Fetched 26.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libxtst6_2%3a1.2.5-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpsgjvt5ei/libxtst6_1.2.5-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7pauty8/python3-minimal_3.13.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libctf0 amd64 2.46-3 [92.2 kB] Fetched 92.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp__ha69g1/libctf0_2.46-3_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp34towgbn/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au 127.0.0.1 - - [10/Apr/2026 15:08:45] code 404, message File not found 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:40895 ./ InRelease 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:40895 ./ Release [462 B] 127.0.0.1 - - [10/Apr/2026 15:08:45] code 404, message File not found 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:40895 ./ Release.gpg 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:40895 ./ Packages [836 kB] Fetched 836 kB in 0s (42.2 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./gcc-16-base_16-20260322-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libc-gconv-modules-extra_2.42-14_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libc6_2.42-14_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libgcc-s1_16-20260322-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./mawk_1.3.4.20260302-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./base-files_14_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libtinfo6_6.6%2b20251231-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./debianutils_5.23.2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./bash_5.3-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libacl1_2.3.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libattr1_2.5.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - 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127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libbz2-1.0_1.0.8-6%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./liblzma5_5.8.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libmd0_1.1.0-2%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./tar_1.35%2bdfsg-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./dpkg_1.23.7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./findutils_4.10.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./grep_3.12-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./gzip_1.13-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./hostname_3.25_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./ncurses-bin_6.6%2b20251231-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./libcrypt1_4.5.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:45] "GET /./perl-base_5.40.1-7_amd64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./libmount1_2.42-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./libsmartcols1_2.42-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./libudev1_260.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./libuuid1_2.42-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./util-linux_2.42-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./libdebconfclient0_0.282%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./base-passwd_3.6.8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./libc-bin_2.42-14_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./ncurses-base_6.6%2b20251231-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:46] "GET /./sysvinit-utils_3.18-1_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au 127.0.0.1 - - [10/Apr/2026 15:08:47] code 404, message File not found 127.0.0.1 - - [10/Apr/2026 15:08:47] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:40895 ./ InRelease 127.0.0.1 - - [10/Apr/2026 15:08:47] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:40895 ./ Release 127.0.0.1 - - [10/Apr/2026 15:08:47] code 404, message File not found 127.0.0.1 - - [10/Apr/2026 15:08:47] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:40895 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./mount_2.42-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./libsystemd-shared_260.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./systemd_260.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./systemd-sysv_260.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./libdbus-1-3_1.16.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./dbus-bin_1.16.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./dbus-session-bus-common_1.16.2-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./libapparmor1_4.1.7-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./libexpat1_2.7.5-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./dbus-daemon_1.16.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./dbus-system-bus-common_1.16.2-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./dbus_1.16.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./libpython3.13-minimal_3.13.12-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./python3.13-minimal_3.13.12-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./python3-minimal_3.13.9-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./media-types_14.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./tzdata_2026a-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2026 15:08:59] "GET /./libffi8_3.5.2-4_amd64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [10/Apr/2026 15:09:11] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp34towgbn/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au Reading package lists... Building dependency tree... Reading state information... dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. gfortran-for-host is already the newest version (4:15.2.0-5). gfortran-for-host set to manually installed. libubsan1 is already the newest version (16-20260322-1). libubsan1 set to manually installed. xdg-utils is already the newest version (1.2.1-2). xdg-utils set to manually installed. libc-bin is already the newest version (2.42-14). libdatrie-dev is already the newest version (0.2.14-1). libdatrie-dev set to manually installed. dbus-user-session is already the newest version (1.16.2-4). dbus-user-session set to manually installed. libsensors5 is already the newest version (1:3.6.2-2+b1). libsensors5 set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1). libunicode-linebreak-perl is already the newest version (0.0.20190101-3). libunicode-linebreak-perl set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-2). libxdmcp6 set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. dconf-service is already the newest version (0.49.0-4). dconf-service set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. libselinux-dev is already the newest version (3.10-1). libselinux-dev set to manually installed. libpangoft2-1.0-0 is already the newest version (1.57.1-1). libpangoft2-1.0-0 set to manually installed. libwayland-client0 is already the newest version (1.24.0-2+b2). libwayland-client0 set to manually installed. libfontconfig1 is already the newest version (2.17.1-5). libfontconfig1 set to manually installed. libtiff6 is already the newest version (4.7.1-2). libtiff6 set to manually installed. libxkbcommon0 is already the newest version (1.13.1-1). libxkbcommon0 set to manually installed. libc6-dev is already the newest version (2.42-14). libc6-dev set to manually installed. librsvg2-2 is already the newest version (2.62.1+dfsg-1). librsvg2-2 set to manually installed. fontconfig-config is already the newest version (2.17.1-5). fontconfig-config set to manually installed. libyaml-tiny-perl is already the newest version (1.76-1). libyaml-tiny-perl set to manually installed. fontconfig is already the newest version (2.17.1-5). fontconfig set to manually installed. libquadmath0 is already the newest version (16-20260322-1). libquadmath0 set to manually installed. coreutils is already the newest version (9.10-1). libjpeg62-turbo is already the newest version (1:2.1.5-4). libjpeg62-turbo set to manually installed. bzip2 is already the newest version (1.0.8-6+b1). bzip2 set to manually installed. gcc-for-host is already the newest version (4:15.2.0-5). gcc-for-host set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. libngtcp2-dev is already the newest version (1.21.0-1). libngtcp2-dev set to manually installed. bash is already the newest version (5.3-2). glycin-thumbnailers is already the newest version (2.0.8-1). glycin-thumbnailers set to manually installed. default-jre-headless is already the newest version (2:1.25-77). default-jre-headless set to manually installed. sed is already the newest version (4.9-2). tcl8.6 is already the newest version (8.6.17+dfsg-1+b1). tcl8.6 set to manually installed. libk5crypto3 is already the newest version (1.22.1-2+b1). libk5crypto3 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-9+b1). libsqlite3-0 set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b1). libavahi-common-data is already the newest version (0.8-18). libavahi-common-data set to manually installed. libkrb5-dev is already the newest version (1.22.1-2+b1). libkrb5-dev set to manually installed. libpixman-1-dev is already the newest version (0.46.4-1+b1). libpixman-1-dev set to manually installed. gtk-update-icon-cache is already the newest version (4.22.2+ds-2). gtk-update-icon-cache set to manually installed. libfontenc1 is already the newest version (1:1.1.8-1+b3). libfontenc1 set to manually installed. libxres1 is already the newest version (2:1.2.1-2). libxres1 set to manually installed. libkpathsea6 is already the newest version (2025.20250727.75242+ds-5+b2). libkpathsea6 set to manually installed. ca-certificates is already the newest version (20260223). ca-certificates set to manually installed. libtcl8.6 is already the newest version (8.6.17+dfsg-1+b1). libtcl8.6 set to manually installed. libkdb5-10t64 is already the newest version (1.22.1-2+b1). libkdb5-10t64 set to manually installed. debhelper is already the newest version (13.31). debhelper set to manually installed. libsepol-dev is already the newest version (3.10-1). libsepol-dev set to manually installed. libxkbfile1 is already the newest version (1:1.1.0-1+b5). libxkbfile1 set to manually installed. libasan8 is already the newest version (16-20260322-1). libasan8 set to manually installed. libgraphite2-dev is already the newest version (1.3.14-13). libgraphite2-dev set to manually installed. libstdc++6 is already the newest version (16-20260322-1). libstdc++6 set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.46-3). binutils-x86-64-linux-gnu set to manually installed. libxml-namespacesupport-perl is already the newest version (1.12-2). libxml-namespacesupport-perl set to manually installed. libgfortran-15-dev is already the newest version (15.2.0-16). libgfortran-15-dev set to manually installed. liblapack-dev is already the newest version (3.12.1-7+b1). liblapack-dev set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-3+b1). libzstd-dev set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. dconf-gsettings-backend is already the newest version (0.49.0-4). dconf-gsettings-backend set to manually installed. libsysprof-capture-4-dev is already the newest version (50.0-1). libsysprof-capture-4-dev set to manually installed. libmpfi0 is already the newest version (1.5.4+ds-5). libmpfi0 set to manually installed. libxcursor1 is already the newest version (1:1.2.3-1+b1). libxcursor1 set to manually installed. libfribidi-dev is already the newest version (1.0.16-5). libfribidi-dev set to manually installed. libitm1 is already the newest version (16-20260322-1). libitm1 set to manually installed. libxaw7 is already the newest version (2:1.0.16-1+b1). libxaw7 set to manually installed. fonts-dejavu-mono is already the newest version (2.37-8). fonts-dejavu-mono set to manually installed. xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. libmagic1t64 is already the newest version (1:5.46-5+b1). libmagic1t64 set to manually installed. libteckit0 is already the newest version (2.5.13+ds-1). libteckit0 set to manually installed. libwebpmux3 is already the newest version (1.5.0-0.1+b1). libwebpmux3 set to manually installed. libxcb-glx0 is already the newest version (1.17.0-2+b2). libxcb-glx0 set to manually installed. mawk is already the newest version (1.3.4.20260302-1). libxt-dev is already the newest version (1:1.2.1-1.3+b1). libxt-dev set to manually installed. libharfbuzz0b is already the newest version (12.3.2-2+b2). libharfbuzz0b set to manually installed. tex-common is already the newest version (6.20). tex-common set to manually installed. libbrotli1 is already the newest version (1.2.0-3). libbrotli1 set to manually installed. libmount1 is already the newest version (2.42-2). libblkid-dev is already the newest version (2.42-2). libblkid-dev set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-16). libstdc++-15-dev set to manually installed. libxss-dev is already the newest version (1:1.2.3-1+b4). libxss-dev set to manually installed. libxpm4 is already the newest version (1:3.5.17-1+b4). libxpm4 set to manually installed. libxft2 is already the newest version (2.3.6-1+b5). libxft2 set to manually installed. libgssrpc4t64 is already the newest version (1.22.1-2+b1). libgssrpc4t64 set to manually installed. libxt6t64 is already the newest version (1:1.2.1-1.3+b1). libxt6t64 set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. init-system-helpers is already the newest version (1.69). gettext-base is already the newest version (0.23.2-2). gettext-base set to manually installed. xfonts-base is already the newest version (1:1.0.5+nmu1). xfonts-base set to manually installed. g++ is already the newest version (4:15.2.0-5). g++ set to manually installed. libasound2t64 is already the newest version (1.2.15.3-1). libasound2t64 set to manually installed. dash is already the newest version (0.5.12-12). libicu78 is already the newest version (78.3-1). libicu78 set to manually installed. libtasn1-6 is already the newest version (4.21.0-2). libtasn1-6 set to manually installed. libthai0 is already the newest version (0.1.30-1). libthai0 set to manually installed. sysvinit-utils is already the newest version (3.18-1). tk8.6 is already the newest version (8.6.17-1+b1). tk8.6 set to manually installed. librtmp-dev is already the newest version (2.6-1). librtmp-dev set to manually installed. libncurses-dev is already the newest version (6.6+20251231-1). libncurses-dev set to manually installed. libatk1.0-0t64 is already the newest version (2.60.0-1+b1). libatk1.0-0t64 set to manually installed. libcups2t64 is already the newest version (2.4.16-1+b1). libcups2t64 set to manually installed. texlive-latex-recommended is already the newest version (2025.20260124-1). texlive-latex-recommended set to manually installed. libsmartcols1 is already the newest version (2.42-2). libfontbox-java is already the newest version (1:1.8.16-5). libfontbox-java set to manually installed. libptexenc1 is already the newest version (2025.20250727.75242+ds-5+b2). libptexenc1 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libpcre2-8-0 is already the newest version (10.46-1+b1). libaudit-common is already the newest version (1:4.1.2-1). libgssapi-krb5-2 is already the newest version (1.22.1-2+b1). libgssapi-krb5-2 set to manually installed. libsframe3 is already the newest version (2.46-3). libsframe3 set to manually installed. libssh2-1-dev is already the newest version (1.11.1-2). libssh2-1-dev set to manually installed. autoconf is already the newest version (2.72-6). autoconf set to manually installed. libxcb-present0 is already the newest version (1.17.0-2+b2). libxcb-present0 set to manually installed. libsharpyuv-dev is already the newest version (1.5.0-0.1+b1). libsharpyuv-dev set to manually installed. make is already the newest version (4.4.1-3). make set 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set to manually installed. libcairo2 is already the newest version (1.18.4-3). libcairo2 set to manually installed. libcc1-0 is already the newest version (16-20260322-1). libcc1-0 set to manually installed. xvfb is already the newest version (2:21.1.21-1). xvfb set to manually installed. libxcb-render0-dev is already the newest version (1.17.0-2+b2). libxcb-render0-dev set to manually installed. texlive-plain-generic is already the newest version (2025.20260124-1). texlive-plain-generic set to manually installed. libngtcp2-crypto-ossl-dev is already the newest version (1.21.0-1). libngtcp2-crypto-ossl-dev set to manually installed. libglib2.0-0t64 is already the newest version (2.88.0-1). libglib2.0-0t64 set to manually installed. texlive-latex-extra is already the newest version (2025.20260124-1). texlive-latex-extra set to manually installed. libngtcp2-16 is already the newest version (1.21.0-1). libngtcp2-16 set to manually installed. libgl1-mesa-dri is already the newest version 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is already the newest version (7.3-2). texinfo set to manually installed. libdeflate-dev is already the newest version (1.23-2+b1). libdeflate-dev set to manually installed. libpangocairo-1.0-0 is already the newest version (1.57.1-1). libpangocairo-1.0-0 set to manually installed. libjbig0 is already the newest version (2.1-6.1+b3). libjbig0 set to manually installed. libatk-bridge2.0-0t64 is already the newest version (2.60.0-1+b1). libatk-bridge2.0-0t64 set to manually installed. libelf1t64 is already the newest version (0.194-4). libelf1t64 set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-5+b1). libgmp-dev set to manually installed. libidn2-0 is already the newest version (2.3.8-4+b1). libidn2-0 set to manually installed. debianutils is already the newest version (5.23.2). dbus is already the newest version (1.16.2-4). dbus set to manually installed. libxcb-sync1 is already the newest version (1.17.0-2+b2). libxcb-sync1 set to manually installed. libpotrace0 is already the newest version (1.16-2+b3). libpotrace0 set to manually installed. libgl1 is already the newest version (1.7.0-3). libgl1 set to manually installed. cpp-15 is already the newest version (15.2.0-16). cpp-15 set to manually installed. grep is already the newest version (3.12-1). libx11-dev is already the newest version (2:1.8.13-1). libx11-dev set to manually installed. libtext-unidecode-perl is already the newest version (1.30-3). libtext-unidecode-perl set to manually installed. mpack is already the newest version (1.6-19). mpack set to manually installed. x11-xkb-utils is already the newest version (7.7+9). x11-xkb-utils set to manually installed. libsm-dev is already the newest version (2:1.2.6-1+b1). libsm-dev set to manually installed. texlive-fonts-extra is already the newest version (2025.20260124-1). texlive-fonts-extra set to manually installed. libpsl5t64 is already the newest version (0.21.5-1). libpsl5t64 set to manually installed. tcl8.6-dev is already the newest version (8.6.17+dfsg-1+b1). tcl8.6-dev set to manually installed. libpam-runtime is already the newest version (1.7.0-5). libsepol2 is already the newest version (3.10-1). libsepol2 set to manually installed. libxxf86vm1 is already the newest version (1:1.1.4-2). libxxf86vm1 set to manually installed. libharfbuzz-icu0 is already the newest version (12.3.2-2+b2). libharfbuzz-icu0 set to manually installed. libjbig-dev is already the newest version (2.1-6.1+b3). libjbig-dev set to manually installed. libtool is already the newest version (2.5.4-10). libtool set to manually installed. bison is already the newest version (2:3.8.2+dfsg-1+b3). bison set to manually installed. gcc-15-for-host is already the newest version (15.2.0-16). gcc-15-for-host set to manually installed. base-passwd is already the newest version (3.6.8). mesa-libgallium is already the newest version (26.0.4-1). mesa-libgallium set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-3+b1). preview-latex-style is already the newest version (13.2-1.1). preview-latex-style set to manually installed. libsharpyuv0 is already the newest version (1.5.0-0.1+b1). libsharpyuv0 set to manually installed. openjdk-25-jdk-headless is already the newest version (25.0.3~7ea-2). openjdk-25-jdk-headless set to manually installed. ucf is already the newest version (3.0053). ucf set to manually installed. libglib2.0-bin is already the newest version (2.88.0-1). libglib2.0-bin set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:15.2.0-5). cpp-x86-64-linux-gnu set to manually installed. tk8.6-dev is already the newest version (8.6.17-1+b1). tk8.6-dev set to manually installed. gcc-15-base is already the newest version (15.2.0-16). gcc-15-base set to manually installed. systemd-sysv is already the newest version (260.1-1). systemd-sysv set to manually installed. python3.13-minimal is already the newest version (3.13.12-1). python3.13-minimal set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2+b5). libxfixes3 set to manually installed. libxml-libxml-perl is already the newest version (2.0207+dfsg+really+2.0134-7). libxml-libxml-perl set to manually installed. libnghttp3-9 is already the newest version (1.15.0-1). libnghttp3-9 set to manually installed. openjdk-25-jre-headless is already the newest version (25.0.3~7ea-2). openjdk-25-jre-headless set to manually installed. libthai-data is already the newest version (0.1.30-1). libthai-data set to manually installed. diffutils is already the newest version (1:3.12-1). libncursesw6 is already the newest version (6.6+20251231-1). libncursesw6 set to manually installed. gir1.2-pango-1.0 is already the newest version (1.57.1-1). gir1.2-pango-1.0 set to manually installed. shared-mime-info is already the newest version (2.4-5+b3). shared-mime-info set to manually installed. libharfbuzz-subset0 is already the newest version (12.3.2-2+b2). libharfbuzz-subset0 set to manually installed. libpango1.0-dev is already the newest version (1.57.1-1). libpango1.0-dev set to manually installed. util-linux is already the newest version (2.42-2). libpixman-1-0 is already the newest version (0.46.4-1+b1). libpixman-1-0 set to manually installed. libcurl4-openssl-dev is already the newest version (8.19.0-3). libcurl4-openssl-dev set to manually installed. libuuid1 is already the newest version (2.42-2). libnghttp2-dev is already the newest version (1.68.1-1). libnghttp2-dev set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1+b1). libhogweed6t64 set to manually installed. libpam-modules is already the newest version (1.7.0-5+b1). libunbound8 is already the newest version (1.24.2-1+b1). libunbound8 set to manually installed. libxfont2 is already the newest version (1:2.0.6-2). libxfont2 set to manually installed. perl-base is already the newest version (5.40.1-7). libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. fonts-dejavu-core is already the newest version (2.37-8). fonts-dejavu-core set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libwebpdemux2 is already the newest version (1.5.0-0.1+b1). libwebpdemux2 set to manually installed. liblzo2-2 is already the newest version (2.10-3+b2). liblzo2-2 set to manually installed. libdav1d7 is already the newest version (1.5.3-1+b1). libdav1d7 set to manually installed. libkrb5-3 is already the newest version (1.22.1-2+b1). libkrb5-3 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. fonts-lmodern is already the newest version (2.005-1). fonts-lmodern set to manually installed. libisl23 is already the newest version (0.27-2). libisl23 set to manually installed. bash-completion is already the newest version (1:2.16.0-8). bash-completion set to manually installed. libnspr4 is already the newest version (2:4.38.2-1). libnspr4 set to manually installed. libxml2-16 is already the newest version (2.15.2+dfsg-0.1). libxml2-16 set to manually installed. libfribidi0 is already the newest version (1.0.16-5). libfribidi0 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b2). libxcb1 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. gfortran-x86-64-linux-gnu is already the newest version (4:15.2.0-5). gfortran-x86-64-linux-gnu set to manually installed. libseccomp2 is already the newest version (2.6.0-2+b1). libseccomp2 set to manually installed. libz3-4 is already the newest version (4.13.3-1+b1). libz3-4 set to manually installed. java-common is already the newest version (0.77). java-common set to manually installed. libtext-wrapi18n-perl is already the newest version (0.06-10). libtext-wrapi18n-perl set to manually installed. default-jdk is already the newest version (2:1.25-77). default-jdk set to manually installed. libtext-charwidth-perl is already the newest version (0.04-11+b5). libtext-charwidth-perl set to manually installed. gir1.2-freedesktop is already the newest version (1.86.0-6). gir1.2-freedesktop set to manually installed. t1utils is already the newest version (1.41-4). t1utils set to manually installed. native-architecture is already the newest version (0.2.6). native-architecture set to manually installed. libice-dev is already the newest version (2:1.1.1-1+b1). libice-dev set to manually installed. hostname is already the newest version (3.25). libtirpc3t64 is already the newest version (1.3.7+ds-1). libtirpc3t64 set to manually installed. libbz2-dev is already the newest version (1.0.8-6+b1). libbz2-dev set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. libxrandr2 is already the newest version (2:1.5.4-1+b4). libxrandr2 set to manually installed. autopoint is already the newest version (0.23.2-2). autopoint set to manually installed. libxext-dev is already the newest version (2:1.3.4-1+b4). libxext-dev set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b4). libxext6 set to manually installed. libpcre2-dev is already the newest version (10.46-1+b1). libpcre2-dev set to manually installed. gir1.2-glib-2.0-dev is already the newest version (2.88.0-1). gir1.2-glib-2.0-dev set to manually installed. perl is already the newest version (5.40.1-7). perl set to manually installed. libtiff-dev is already the newest version (4.7.1-2). libtiff-dev set to manually installed. libblas3 is already the newest version (3.12.1-7+b1). libblas3 set to manually installed. gfortran-15-for-host is already the newest version (15.2.0-16). gfortran-15-for-host set to manually installed. libgirepository-2.0-0 is already the newest version (2.88.0-1). libgirepository-2.0-0 set to manually installed. libattr1 is already the newest version (1:2.5.2-4). libaudit1 is already the newest version (1:4.1.2-1+b1). libgnutls30t64 is already the newest version (3.8.12-3). libgnutls30t64 set to manually installed. liblcms2-2 is already the newest version (2.17-1). liblcms2-2 set to manually installed. libglib2.0-dev is already the newest version (2.88.0-1). libglib2.0-dev set to manually installed. libwebp7 is already the newest version (1.5.0-0.1+b1). libwebp7 set to manually installed. linux-libc-dev is already the newest version (6.19.11-1). linux-libc-dev set to manually installed. texinfo-lib is already the newest version (7.3-2). texinfo-lib set to manually installed. libxml-sax-base-perl is already the newest version (1.09-3). libxml-sax-base-perl set to manually installed. mount is already the newest version (2.42-2). mount set to manually installed. libkrb5support0 is already the newest version (1.22.1-2+b1). libkrb5support0 set to manually installed. x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. libxrender-dev is already the newest version (1:0.9.12-1+b1). libxrender-dev set to manually installed. dbus-session-bus-common is already the newest version (1.16.2-4). dbus-session-bus-common set to manually installed. libbsd0 is already the newest version (0.12.2-2+b1). libbsd0 set to manually installed. libjpeg-dev is already the newest version (1:2.1.5-4). libjpeg-dev set to manually installed. lmodern is already the newest version (2.005-1). lmodern set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b1). libxau-dev is already the newest version (1:1.0.11-1+b1). libxau-dev set to manually installed. texlive-binaries is already the newest version (2025.20250727.75242+ds-5+b2). texlive-binaries set to manually installed. pango1.0-tools is already the newest version (1.57.1-1). pango1.0-tools set to manually installed. libcom-err2 is already the newest version (1.47.4-1). libcom-err2 set to manually installed. libpcre2-32-0 is already the newest version (10.46-1+b1). libpcre2-32-0 set to manually installed. openssl-provider-legacy is already the newest version (3.6.1-3). libgdk-pixbuf2.0-common is already the newest version (2.44.6+dfsg-2). libgdk-pixbuf2.0-common set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b1). libkeyutils1 set to manually installed. libxmu6 is already the newest version (2:1.1.3-4). libxmu6 set to manually installed. cpp-15-x86-64-linux-gnu is already the newest version (15.2.0-16). cpp-15-x86-64-linux-gnu set to manually installed. libxss1 is already the newest version (1:1.2.3-1+b4). libxss1 set to manually installed. libhwy1t64 is already the newest version (1.3.0-2). libhwy1t64 set to manually installed. libdrm-common is already the newest version (2.4.131-1). libdrm-common set to manually installed. libavahi-common3 is already the newest version (0.8-18). libavahi-common3 set to manually installed. libnss3 is already the newest version (2:3.121-1). libnss3 set to manually installed. libglx-mesa0 is already the newest version (26.0.4-1). libglx-mesa0 set to manually installed. libtk8.6 is already the newest version (8.6.17-1+b1). libtk8.6 set to manually installed. libtinfo6 is already the newest version (6.6+20251231-1). xfonts-utils is already the newest version (1:7.7+7). xfonts-utils set to manually installed. libgfortran5 is already the newest version (16-20260322-1). libgfortran5 set to manually installed. liblsan0 is already the newest version (16-20260322-1). liblsan0 set to manually installed. cpp-for-host is already the newest version (4:15.2.0-5). cpp-for-host set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b2). libevent-2.1-7t64 set to manually installed. glycin-loaders is already the newest version (2.0.8-1). glycin-loaders set to manually installed. libdebconfclient0 is already the newest version (0.282+b2). libice6 is already the newest version (2:1.1.1-1+b1). libice6 set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.12-3). libgnutls-dane0t64 set to manually installed. gir1.2-glib-2.0 is already the newest version (2.88.0-1). gir1.2-glib-2.0 set to manually installed. libacl1 is already the newest version (2.3.2-3). libxi6 is already the newest version (2:1.8.2-2). libxi6 set to manually installed. gettext is already the newest version (0.23.2-2). gettext set to manually installed. libthai-dev is already the newest version (0.1.30-1). libthai-dev set to manually installed. gcc-15 is already the newest version (15.2.0-16). gcc-15 set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1+b1). libldap2 set to manually installed. libgraphite2-3 is already the newest version (1.3.14-13). libgraphite2-3 set to manually installed. libfontconfig-dev is already the newest version (2.17.1-5). libfontconfig-dev set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. libdatrie1 is already the newest version (0.2.14-1). libdatrie1 set to manually installed. texlive-luatex is already the newest version (2025.20260124-1). texlive-luatex set to manually installed. libcap-ng0 is already the newest version (0.9.2-1). libsasl2-modules-db is already the newest version (2.1.28+dfsg1-11). libsasl2-modules-db set to manually installed. libavahi-client3 is already the newest version (0.8-18). libavahi-client3 set to manually installed. xserver-common is already the newest version (2:21.1.21-1). xserver-common set to manually installed. libngtcp2-crypto-ossl0 is already the newest version (1.21.0-1). libngtcp2-crypto-ossl0 set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libatspi2.0-0t64 is already the newest version (2.60.0-1+b1). libatspi2.0-0t64 set to manually installed. libpython3.13-stdlib is already the newest version (3.13.12-1). libpython3.13-stdlib set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b2). libxcb-randr0 set to manually installed. libxcb-shm0-dev is already the newest version (1.17.0-2+b2). libxcb-shm0-dev set to manually installed. dbus-bin is already the newest version (1.16.2-4). dbus-bin set to manually installed. libwebpdecoder3 is already the newest version (1.5.0-0.1+b1). libwebpdecoder3 set to manually installed. libdbus-1-3 is already the newest version (1.16.2-4). libdbus-1-3 set to manually installed. libxcomposite1 is already the newest version (1:0.4.6-1+b1). libxcomposite1 set to manually installed. uuid-dev is already the newest version (2.42-2). uuid-dev set to manually installed. xorg-sgml-doctools is already the newest version (1:1.12.1-1). xorg-sgml-doctools set to manually installed. openssl is already the newest version (3.6.1-3). openssl set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.131-1). libdrm-amdgpu1 set to manually installed. libssl-dev is already the newest version (3.6.1-3). libssl-dev set to manually installed. libglib2.0-dev-bin is already the newest version (2.88.0-1). libglib2.0-dev-bin set to manually installed. libpcre2-posix3 is already the newest version (10.46-1+b1). libpcre2-posix3 set to manually installed. libp11-kit-dev is already the newest version (0.26.2-2). libp11-kit-dev set to manually installed. libsynctex2 is already the newest version (2025.20250727.75242+ds-5+b2). libsynctex2 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5+b1). librtmp1 is already the newest version (2.6-1). librtmp1 set to manually installed. xkb-data is already the newest version (2.47-1). xkb-data set to manually installed. xauth is already the newest version (1:1.1.2-1.1). xauth set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libpipeline1 is already the newest version (1.5.8-2+b1). libpipeline1 set to manually installed. libexpat1-dev is already the newest version (2.7.5-1). libexpat1-dev set to manually installed. libffi8 is already the newest version (3.5.2-4). libffi8 set to manually installed. texlive-pictures is already the newest version (2025.20260124-1). texlive-pictures set to manually installed. libheif-plugin-dav1d is already the newest version (1.21.2-4). libheif-plugin-dav1d set to manually installed. libpsl-dev is already the newest version (0.21.5-1). libpsl-dev set to manually installed. file is already the newest version (1:5.46-5+b1). file set to manually installed. libharfbuzz-gobject0 is already the newest version (12.3.2-2+b2). libharfbuzz-gobject0 set to manually installed. gcc is already the newest version (4:15.2.0-5). gcc set to manually installed. liblzma-dev is already the newest version (5.8.3-1). liblzma-dev set to manually installed. libglib2.0-data is already the newest version (2.88.0-1). libglib2.0-data set to manually installed. libfreetype6 is already the newest version (2.14.3+dfsg-1). libfreetype6 set to manually installed. libpaper-utils is already the newest version (2.2.5-0.3+b3). libpaper-utils set to manually installed. libxtst6 is already the newest version (2:1.2.5-1+b1). libxtst6 set to manually installed. python3-minimal is already the newest version (3.13.9-3). python3-minimal set to manually installed. libctf0 is already the newest version (2.46-3). libctf0 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au (Reading database ... 177001 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.zMu960b1Au... I: success in 299.1955 seconds Downloading dependency 509 of 540: libdbus-1-3:amd64=1.16.2-4 Downloading dependency 510 of 540: libxcomposite1:amd64=1:0.4.6-1+b1 Downloading dependency 511 of 540: uuid-dev:amd64=2.42-2 Downloading dependency 512 of 540: xorg-sgml-doctools:amd64=1:1.12.1-1 Downloading dependency 513 of 540: openssl:amd64=3.6.1-3 Downloading dependency 514 of 540: libdrm-amdgpu1:amd64=2.4.131-1 Downloading dependency 515 of 540: libssl-dev:amd64=3.6.1-3 Downloading dependency 516 of 540: libglib2.0-dev-bin:amd64=2.88.0-1 Downloading dependency 517 of 540: libpcre2-posix3:amd64=10.46-1+b1 Downloading dependency 518 of 540: libp11-kit-dev:amd64=0.26.2-2 Downloading dependency 519 of 540: libsynctex2:amd64=2025.20250727.75242+ds-5+b2 Downloading dependency 520 of 540: libpam-modules-bin:amd64=1.7.0-5+b1 Downloading dependency 521 of 540: librtmp1:amd64=2.6-1 Downloading dependency 522 of 540: xkb-data:amd64=2.47-1 Downloading dependency 523 of 540: xauth:amd64=1:1.1.2-1.1 Downloading dependency 524 of 540: libmpfr6:amd64=4.2.2-3 Downloading dependency 525 of 540: libpipeline1:amd64=1.5.8-2+b1 Downloading dependency 526 of 540: libexpat1-dev:amd64=2.7.5-1 Downloading dependency 527 of 540: libffi8:amd64=3.5.2-4 Downloading dependency 528 of 540: texlive-pictures:amd64=2025.20260124-1 Downloading dependency 529 of 540: libheif-plugin-dav1d:amd64=1.21.2-4 Downloading dependency 530 of 540: libpsl-dev:amd64=0.21.5-1 Downloading dependency 531 of 540: file:amd64=1:5.46-5+b1 Downloading dependency 532 of 540: libharfbuzz-gobject0:amd64=12.3.2-2+b2 Downloading dependency 533 of 540: gcc:amd64=4:15.2.0-5 Downloading dependency 534 of 540: liblzma-dev:amd64=5.8.3-1 Downloading dependency 535 of 540: libglib2.0-data:amd64=2.88.0-1 Downloading dependency 536 of 540: libfreetype6:amd64=2.14.3+dfsg-1 Downloading dependency 537 of 540: libpaper-utils:amd64=2.2.5-0.3+b3 Downloading dependency 538 of 540: libxtst6:amd64=2:1.2.5-1+b1 Downloading dependency 539 of 540: python3-minimal:amd64=3.13.9-3 Downloading dependency 540 of 540: libctf0:amd64=2.46-3 env --chdir=/srv/rebuilderd/tmp/rebuilderd5YCEOJ/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1775822776 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildbI_RlO/debrebuild.sbuildrc.BxRhHJQlVnDf sbuild --build=amd64 --host=amd64 --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildbI_RlO/debrebuild.tar.vScMBsCUDeKn --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=r-base-4.5.3.20260410 /srv/rebuilderd/tmp/rebuilderd5YCEOJ/inputs/r-base_4.5.3.20260410-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl43-amd64.novalocal +==============================================================================+ | r-base 4.5.3.20260410-1 (amd64) Fri, 10 Apr 2026 15:13:45 +0000 | +==============================================================================+ Package: r-base Version: 4.5.3.20260410-1 Source Version: 4.5.3.20260410-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildbI_RlO/debrebuild.tar.vScMBsCUDeKn to /srv/rebuilderd/tmp/tmp.sbuild.aQonj1PVCs... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 10 Apr 2026 15:14:03 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderd5YCEOJ/inputs/r-base_4.5.3.20260410-1.dsc exists in /srv/rebuilderd/tmp/rebuilderd5YCEOJ/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 10 Apr 2026 15:14:07 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: gfortran-for-host (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 13), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, libtirpc-dev, build-essential Filtered Build-Depends: gfortran-for-host (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 13), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion, libtirpc-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-OLCF6y/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 10 Apr 2026 15:14:12 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Fri, 10 Apr 2026 15:14:13 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.74+deb13+1-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.74-2 (2026-03-08) amd64 (x86_64) Toolchain package versions: binutils_2.46-3 dpkg-dev_1.23.7 g++-15_15.2.0-16 gcc-15_15.2.0-16 libc6-dev_2.42-14 libstdc++-15-dev_15.2.0-16 libstdc++6_16-20260322-1 linux-libc-dev_6.19.11-1 Package versions: adwaita-icon-theme_50.0-1 at-spi2-common_2.60.0-1 autoconf_2.72-6 automake_1:1.18.1-4 autopoint_0.23.2-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-2 bash-completion_1:2.16.0-8 binutils_2.46-3 binutils-common_2.46-3 binutils-x86-64-linux-gnu_2.46-3 bison_2:3.8.2+dfsg-1+b3 bsdextrautils_2.42-2 bubblewrap_0.11.1-1 build-essential_12.12 bzip2_1.0.8-6+b1 ca-certificates_20260223 ca-certificates-java_20260311 comerr-dev_2.1-1.47.4-1 coreutils_9.10-1 cpp_4:15.2.0-5 cpp-15_15.2.0-16 cpp-15-for-host_15.2.0-16 cpp-15-x86-64-linux-gnu_15.2.0-16 cpp-for-host_4:15.2.0-5 cpp-x86-64-linux-gnu_4:15.2.0-5 dash_0.5.12-12 dbus_1.16.2-4 dbus-bin_1.16.2-4 dbus-daemon_1.16.2-4 dbus-session-bus-common_1.16.2-4 dbus-system-bus-common_1.16.2-4 dbus-user-session_1.16.2-4 dconf-gsettings-backend_0.49.0-4 dconf-service_0.49.0-4 debconf_1.5.92 debhelper_13.31 debianutils_5.23.2 default-jdk_2:1.25-77 default-jdk-headless_2:1.25-77 default-jre_2:1.25-77 default-jre-headless_2:1.25-77 dh-autoreconf_22 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 file_1:5.46-5+b1 findutils_4.10.0-3 fontconfig_2.17.1-5 fontconfig-config_2.17.1-5 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 g++_4:15.2.0-5 g++-15_15.2.0-16 g++-15-x86-64-linux-gnu_15.2.0-16 g++-x86-64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-15_15.2.0-16 gcc-15-base_15.2.0-16 gcc-15-for-host_15.2.0-16 gcc-15-x86-64-linux-gnu_15.2.0-16 gcc-16-base_16-20260322-1 gcc-for-host_4:15.2.0-5 gcc-x86-64-linux-gnu_4:15.2.0-5 gettext_0.23.2-2 gettext-base_0.23.2-2 gfortran-15-for-host_15.2.0-16 gfortran-15-x86-64-linux-gnu_15.2.0-16 gfortran-for-host_4:15.2.0-5 gfortran-x86-64-linux-gnu_4:15.2.0-5 gir1.2-freedesktop_1.86.0-6 gir1.2-freedesktop-dev_1.86.0-6 gir1.2-glib-2.0_2.88.0-1 gir1.2-glib-2.0-dev_2.88.0-1 gir1.2-harfbuzz-0.0_12.3.2-2+b2 gir1.2-pango-1.0_1.57.1-1 girepository-tools_2.88.0-1 glycin-loaders_2.0.8-1 glycin-thumbnailers_2.0.8-1 grep_3.12-1 groff-base_1.23.0-10 gtk-update-icon-cache_4.22.2+ds-2 gzip_1.13-1 hicolor-icon-theme_0.18-2 hostname_3.25 icu-devtools_78.3-1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 java-common_0.77 krb5-multidev_1.22.1-2+b1 libacl1_2.3.2-3 libapache-pom-java_33-2 libapparmor1_4.1.7-1 libarchive-zip-perl_1.68-1 libasan8_16-20260322-1 libasound2-data_1.2.15.3-1 libasound2t64_1.2.15.3-1 libatk-bridge2.0-0t64_2.60.0-1+b1 libatk1.0-0t64_2.60.0-1+b1 libatomic1_16-20260322-1 libatspi2.0-0t64_2.60.0-1+b1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libavahi-client3_0.8-18 libavahi-common-data_0.8-18 libavahi-common3_0.8-18 libbinutils_2.46-3 libblas-dev_3.12.1-7+b1 libblas3_3.12.1-7+b1 libblkid-dev_2.42-2 libblkid1_2.42-2 libbrotli-dev_1.2.0-3 libbrotli1_1.2.0-3 libbsd0_0.12.2-2+b1 libbz2-1.0_1.0.8-6+b1 libbz2-dev_1.0.8-6+b1 libc-bin_2.42-14 libc-dev-bin_2.42-14 libc-gconv-modules-extra_2.42-14 libc6_2.42-14 libc6-dev_2.42-14 libcairo-gobject2_1.18.4-3 libcairo-script-interpreter2_1.18.4-3 libcairo2_1.18.4-3 libcairo2-dev_1.18.4-3 libcap-ng0_0.9.2-1 libcap2_1:2.78-1 libcc1-0_16-20260322-1 libcloudproviders0_0.4.0-2 libcolord2_1.4.8-3 libcom-err2_1.47.4-1 libcommons-logging-java_1.3.0-2 libcommons-parent-java_56-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.46-3 libctf0_2.46-3 libcups2t64_2.4.16-1+b1 libcurl4-openssl-dev_8.19.0-3 libcurl4t64_8.19.0-3 libdatrie-dev_0.2.14-1 libdatrie1_0.2.14-1 libdav1d7_1.5.3-1+b1 libdb5.3t64_5.3.28+dfsg2-11 libdbus-1-3_1.16.2-4 libdconf1_0.49.0-4 libde265-0_1.0.18-1 libdebconfclient0_0.282+b2 libdebhelper-perl_13.31 libdeflate-dev_1.23-2+b1 libdeflate0_1.23-2+b1 libdpkg-perl_1.23.7 libdrm-amdgpu1_2.4.131-1 libdrm-common_2.4.131-1 libdrm-intel1_2.4.131-1 libdrm2_2.4.131-1 libedit2_3.1-20251016-1 libelf1t64_0.194-4 libepoxy0_1.5.10-2+b1 libevent-2.1-7t64_2.1.12-stable-10+b2 libexpat1_2.7.5-1 libexpat1-dev_2.7.5-1 libffi-dev_3.5.2-4 libffi8_3.5.2-4 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.15.0-1 libfile-which-perl_1.27-2 libfontbox-java_1:1.8.16-5 libfontconfig-dev_2.17.1-5 libfontconfig1_2.17.1-5 libfontenc1_1:1.1.8-1+b3 libfreetype-dev_2.14.3+dfsg-1 libfreetype6_2.14.3+dfsg-1 libfribidi-dev_1.0.16-5 libfribidi0_1.0.16-5 libgbm1_26.0.4-1 libgcc-15-dev_15.2.0-16 libgcc-s1_16-20260322-1 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgdk-pixbuf-2.0-0_2.44.6+dfsg-2 libgdk-pixbuf2.0-common_2.44.6+dfsg-2 libgfortran-15-dev_15.2.0-16 libgfortran5_16-20260322-1 libgif7_5.2.2-1+b2 libgio-2.0-dev_2.88.0-1 libgio-2.0-dev-bin_2.88.0-1 libgirepository-2.0-0_2.88.0-1 libgl1_1.7.0-3 libgl1-mesa-dri_26.0.4-1 libglib2.0-0t64_2.88.0-1 libglib2.0-bin_2.88.0-1 libglib2.0-data_2.88.0-1 libglib2.0-dev_2.88.0-1 libglib2.0-dev-bin_2.88.0-1 libglvnd0_1.7.0-3 libglx-mesa0_26.0.4-1 libglx0_1.7.0-3 libglycin-2-0_2.0.8-1 libgmp-dev_2:6.3.0+dfsg-5+b1 libgmp10_2:6.3.0+dfsg-5+b1 libgmpxx4ldbl_2:6.3.0+dfsg-5+b1 libgnutls-dane0t64_3.8.12-3 libgnutls28-dev_3.8.12-3 libgnutls30t64_3.8.12-3 libgomp1_16-20260322-1 libgprofng0_2.46-3 libgraphite2-3_1.3.14-13 libgraphite2-dev_1.3.14-13 libgssapi-krb5-2_1.22.1-2+b1 libgssrpc4t64_1.22.1-2+b1 libgtk-3-0t64_3.24.52-1 libgtk-3-common_3.24.52-1 libharfbuzz-cairo0_12.3.2-2+b2 libharfbuzz-dev_12.3.2-2+b2 libharfbuzz-gobject0_12.3.2-2+b2 libharfbuzz-icu0_12.3.2-2+b2 libharfbuzz-subset0_12.3.2-2+b2 libharfbuzz0b_12.3.2-2+b2 libheif-plugin-dav1d_1.21.2-4 libheif-plugin-libde265_1.21.2-4 libheif1_1.21.2-4 libhogweed6t64_3.10.2-1+b1 libhwasan0_16-20260322-1 libhwy1t64_1.3.0-2 libice-dev_2:1.1.1-1+b1 libice6_2:1.1.1-1+b1 libicu-dev_78.3-1 libicu78_78.3-1 libidn2-0_2.3.8-4+b1 libidn2-dev_2.3.8-4+b1 libintl-perl_1.37-1 libisl23_0.27-2 libitm1_16-20260322-1 libjansson4_2.14-2+b4 libjbig-dev_2.1-6.1+b3 libjbig0_2.1-6.1+b3 libjpeg-dev_1:2.1.5-4 libjpeg62-turbo_1:2.1.5-4 libjpeg62-turbo-dev_1:2.1.5-4 libjxl0.11_0.11.2-0.1 libk5crypto3_1.22.1-2+b1 libkadm5clnt-mit12_1.22.1-2+b1 libkadm5srv-mit12_1.22.1-2+b1 libkdb5-10t64_1.22.1-2+b1 libkeyutils1_1.6.3-6+b1 libkpathsea6_2025.20250727.75242+ds-5+b2 libkrb5-3_1.22.1-2+b1 libkrb5-dev_1.22.1-2+b1 libkrb5support0_1.22.1-2+b1 liblapack-dev_3.12.1-7+b1 liblapack3_3.12.1-7+b1 liblcms2-2_2.17-1 libldap-dev_2.6.10+dfsg-1+b1 libldap2_2.6.10+dfsg-1+b1 liblerc-dev_4.1.0+ds-1 liblerc4_4.1.0+ds-1 libllvm21_1:21.1.8-7 liblsan0_16-20260322-1 liblzma-dev_5.8.3-1 liblzma5_5.8.3-1 liblzo2-2_2.10-3+b2 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmd0_1.1.0-2+b2 libmime-charset-perl_1.013.1-2 libmount-dev_2.42-2 libmount1_2.42-2 libmpc3_1.3.1-3 libmpfi0_1.5.4+ds-5 libmpfr6_4.2.2-3 libncurses-dev_6.6+20251231-1 libncurses6_6.6+20251231-1 libncursesw6_6.6+20251231-1 libnettle8t64_3.10.2-1+b1 libnghttp2-14_1.68.1-1 libnghttp2-dev_1.68.1-1 libnghttp3-9_1.15.0-1 libnghttp3-dev_1.15.0-1 libngtcp2-16_1.21.0-1 libngtcp2-crypto-ossl-dev_1.21.0-1 libngtcp2-crypto-ossl0_1.21.0-1 libngtcp2-dev_1.21.0-1 libnspr4_2:4.38.2-1 libnss3_2:3.121-1 libp11-kit-dev_0.26.2-2 libp11-kit0_0.26.2-2 libpam-modules_1.7.0-5+b1 libpam-modules-bin_1.7.0-5+b1 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+------------------------------------------------------------------------------+ | Build Fri, 10 Apr 2026 15:14:13 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-base Binary: r-base, r-base-core, r-base-dev, r-mathlib, r-base-html, r-doc-pdf, r-doc-html, r-doc-info, r-recommended Architecture: any all Version: 4.5.3.20260410-1 Maintainer: Dirk Eddelbuettel Homepage: https://www.R-project.org/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/edd/r-base Vcs-Git: https://salsa.debian.org/edd/r-base.git Build-Depends: gfortran-for-host (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 13), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, 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set_R_LIBS_USER_and_SITE_in_Renviron.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1775822776 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 4.5.3.20260410-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dirk Eddelbuettel dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean *** clean *** dh_testdir dh_testroot rm -f configure-stamp \ build-stamp build-indep-stamp build-arch-stamp \ make-stamp make-arch-stamp make-indep-stamp \ install-indep-stamp install-arch-stamp \ check-stamp [ ! -f Makefile ] || /usr/bin/make distclean rm -f `find . -name "*~"` rm -rf debian/tmp debian/files debian/files* core debian/substvars debian/files rm -f doc/html/function.html doc/html/packages.html rm -f modules/*.so src/unix/Rscript dh_clean debian/rules binary-arch *** configure *** #automake #autoconf dh_testdir R_SHELL=/bin/bash \ mkdir_p="/bin/mkdir -p" \ MKDIR_P="/bin/mkdir -p" \ R_TEXI2DVICMD=emulation \ R_PAPERSIZE=letter \ R_BROWSER=xdg-open \ R_BZIPCMD=/bin/bzip2 \ R_GZIPCMD="/bin/gzip -n" \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ JAVA_HOME=/usr/lib/jvm/default-java \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ TAR=/bin/tar \ LIBnn=lib \ AWK=/usr/bin/awk \ DD=/bin/dd \ GREP=/bin/grep \ FGREP="/bin/grep -F" \ EGREP="/bin/grep -E" \ SED=/bin/sed \ GETWD="/bin/pwd" \ CC=x86_64-linux-gnu-gcc \ CXX=x86_64-linux-gnu-g++ \ F77=x86_64-linux-gnu-gfortran \ FC=x86_64-linux-gnu-gfortran \ CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2" \ FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection" \ FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection" \ CPPFLAGS= \ LDFLAGS="-Wl,-z,relro" \ FLIBS= \ rsharedir=/usr/share/R/share \ rincludedir=/usr/share/R/include \ rdocdir=/usr/share/R/doc \ ./configure --prefix=/usr \ --build=x86_64-linux-gnu \ --host=x86_64-linux-gnu \ --with-cairo \ --with-jpeglib \ --with-readline \ --with-tcltk \ --mandir=/usr/share/man \ --infodir=/usr/share/info \ --datadir=/usr/share/R/share \ --includedir=/usr/share/R/include \ --with-blas \ --with-lapack \ --enable-long-double \ --enable-R-profiling \ --enable-R-shlib \ --enable-memory-profiling \ --without-recommended-packages \ --build x86_64-linux-gnu checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for /usr/bin/pager... /usr/bin/pager checking for /bin/tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 6.8... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip -n checking for bzip2... /bin/bzip2 using default browser ... xdg-open checking for xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking whether x86_64-linux-gnu-gcc is a C23 compiler... yes checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E looking for a modern Fortran compiler checking for x86_64-linux-gnu-gfortran... x86_64-linux-gnu-gfortran checking whether the compiler supports GNU Fortran... yes checking whether x86_64-linux-gnu-gfortran accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking whether x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 can compile C++ code... yes checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether x86_64-linux-gnu-gcc accepts -fvisibility... yes checking whether x86_64-linux-gnu-g++ accepts -fvisibility... yes checking whether x86_64-linux-gnu-gfortran accepts -fvisibility... yes checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the compiler supports GNU Objective C... no checking whether x86_64-linux-gnu-gcc accepts -g... no checking whether x86_64-linux-gnu-gcc -std=gnu17 is a C17 compiler... yes checking whether x86_64-linux-gnu-gcc -std=gnu90 is a C90 compiler... yes checking whether x86_64-linux-gnu-gcc -std=gnu99 is a C99 compiler... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... 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(cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for x86_64-pc-linux-gnu Source directory: . Installation directory: /usr C compiler: x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 Fortran fixed-form compiler: x86_64-linux-gnu-gfortran -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection Default C++ compiler: x86_64-linux-gnu-g++ -std=gnu++20 -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 Fortran free-form compiler: x86_64-linux-gnu-gfortran -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection Obj-C compiler: x86_64-linux-gnu-gcc Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl, libdeflate Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling, libdeflate for lazyload Capabilities skipped: Options not enabled: shared BLAS Recommended packages: no touch configure-stamp *** make-arch *** /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2" \ FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection" \ FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection" \ CC=x86_64-linux-gnu-gcc \ CXX=x86_64-linux-gnu-g++ \ F77=x86_64-linux-gnu-gfortran \ LDFLAGS="-Wl,-z,relro" \ PKG_BUILT_STAMP="""" \ R_GZIPCMD="/bin/gzip -n" \ R make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/etc' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/share' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' mkdir -p -- ../../bin make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' mkdir -p -- ../../include make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regcomp.c -o regcomp.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regerror.c -o regerror.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regexec.c -o regexec.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o x86_64-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o x86_64-linux-gnu-ranlib libtre.a make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c interv.c -o interv.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c maxcol.c -o maxcol.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pretty.c -o pretty.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c uncmin.c -o uncmin.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpbfa.f -o dpbfa.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpbsl.f -o dpbsl.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpoco.f -o dpoco.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpodi.f -o dpodi.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpofa.f -o dpofa.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dposl.f -o dposl.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrdc.f -o dqrdc.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrdc2.f -o dqrdc2.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrls.f -o dqrls.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrsl.f -o dqrsl.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrutl.f -o dqrutl.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dsvdc.f -o dsvdc.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dtrco.f -o dtrco.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o x86_64-linux-gnu-ranlib libappl.a make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o x86_64-linux-gnu-ranlib libnmath.a make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rembedded.c -o Rembedded.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dynload.c -o dynload.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c system.c -o system.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ./sys-unix.c -o sys-unix.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-std.c -o sys-std.o x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o x86_64-linux-gnu-ranlib libunix.a make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.5.3.20260410"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making clippath.d from clippath.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making flexiblas.d from flexiblas.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making machine.d from machine.c making main.d from main.c making mapply.d from mapply.c making mask.d from mask.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making patterns.d from patterns.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c CommandLineArgs.c -o CommandLineArgs.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rdynload.c -o Rdynload.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Renviron.c -o Renviron.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c RNG.c -o RNG.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c agrep.c -o agrep.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c altclasses.c -o altclasses.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c altrep.c -o altrep.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c apply.c -o apply.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c arithmetic.c -o arithmetic.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c array.c -o array.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c attrib.c -o attrib.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bind.c -o bind.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c builtin.c -o builtin.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c character.c -o character.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c coerce.c -o coerce.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c complex.c -o complex.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c connections.c -o connections.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c context.c -o context.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cum.c -o cum.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dcf.c -o dcf.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c datetime.c -o datetime.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c debug.c -o debug.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c deparse.c -o deparse.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dotcode.c -o dotcode.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dounzip.c -o dounzip.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dstruct.c -o dstruct.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c duplicate.c -o duplicate.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c edit.c -o edit.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c engine.c -o engine.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c envir.c -o envir.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c eval.c -o eval.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c flexiblas.c -o flexiblas.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c format.c -o format.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gevents.c -o gevents.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gram.c -o gram.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gram-ex.c -o gram-ex.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c grep.c -o grep.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c identical.c -o identical.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c inlined.c -o inlined.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c inspect.c -o inspect.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c internet.c -o internet.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c iosupport.c -o iosupport.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lapack.c -o lapack.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c list.c -o list.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c localecharset.c -o localecharset.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c logic.c -o logic.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c machine.c -o machine.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o main.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mapply.c -o mapply.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c match.c -o match.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c memory.c -o memory.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c names.c -o names.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.c -o objects.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c paste.c -o paste.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c platform.c -o platform.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plotmath.c -o plotmath.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c print.c -o print.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c printarray.c -o printarray.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c printvector.c -o printvector.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c printutils.c -o printutils.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qsort.c -o qsort.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c radixsort.c -o radixsort.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c raw.c -o raw.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c registration.c -o registration.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c relop.c -o relop.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rlocale.c -o rlocale.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c saveload.c -o saveload.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c scan.c -o scan.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c seq.c -o seq.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c serialize.c -o serialize.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sort.c -o sort.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c source.c -o source.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c split.c -o split.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sprintf.c -o sprintf.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c startup.c -o startup.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c subassign.c -o subassign.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c subscript.c -o subscript.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c summary.c -o summary.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sysutils.c -o sysutils.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c times.c -o times.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c unique.c -o unique.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c version.c -o version.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c g_alab_her.c -o g_alab_her.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c g_cntrlify.c -o g_cntrlify.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c g_fontdb.c -o g_fontdb.o x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c g_her_glyph.c -o g_her_glyph.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c xxxpr.f -o xxxpr.o x86_64-linux-gnu-gcc -shared -fopenmp -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/bin/exec mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/lib make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' x86_64-linux-gnu-gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmain.c -o Rmain.o x86_64-linux-gnu-gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-z,relro -o R.bin Rmain.o -lR make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making sock.d from sock.c making sockconn.d from sockconn.c make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c Rsock.c -o Rsock.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c internet.c -o internet.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c libcurl.c -o libcurl.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c sock.c -o sock.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c sockconn.c -o sockconn.o x86_64-linux-gnu-gcc -shared -L"../../../lib" -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/modules make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' making Lapack.d from Lapack.c make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Lapack.c -o Lapack.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ../../main/flexiblas.c -o flexiblas.o x86_64-linux-gnu-gcc -shared -L"../../../lib" -Wl,-z,relro -o lapack.so Lapack.o flexiblas.o -lR -llapack -lblas -lgfortran -lm -lquadmath make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' x86_64-linux-gnu-gcc -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devX11.c -o devX11.o x86_64-linux-gnu-gcc -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rotated.c -o rotated.o x86_64-linux-gnu-gcc -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rbitmap.c -o rbitmap.o x86_64-linux-gnu-gcc -shared -L"../../../lib" -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgobject-2.0 -lglib-2.0 -lcairo -lpng16 -lz -lXext -lX11 -lX11 -lXt -lR -lm x86_64-linux-gnu-gcc -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dataentry.c -o dataentry.o x86_64-linux-gnu-gcc -shared -L"../../../lib" -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgobject-2.0 -lglib-2.0 -lcairo -lpng16 -lz -lXext -lX11 -lX11 -lXt -lR -lm make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' mkdir -p -- ../../library make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/profile' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' building package 'base' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' mkdir -p -- ../../../library/base/demo make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools mkdir -p -- ../../../library/tools/misc make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' mkdir -p -- ../../../library/tools/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making pdscan.d from pdscan.c making Rsha256.d from Rsha256.c making sha256.d from sha256.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c text.c -o text.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmd5.c -o Rmd5.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c md5.c -o md5.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c signals.c -o signals.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c install.c -o install.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c getfmts.c -o getfmts.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c http.c -o http.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gramLatex.c -o gramLatex.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gramRd.c -o gramRd.o In file included from /usr/include/string.h:548, from ../../../include/Rinlinedfuns.h:81, from ../../../include/Defn.h:820, from gramRd.c:96: In function ‘memmove’, inlined from ‘mkIfdef’ at gramRd.c:4329:68, inlined from ‘token’ at gramRd.c:4033:70, inlined from ‘yylex’ at gramRd.c:4406:15, inlined from ‘Rf_yyparse’ at gramRd.c:2234:16: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:36:10: warning: ‘__builtin_memmove’ specified bound between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 36 | return __builtin___memmove_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pdscan.c -o pdscan.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rsha256.c -o Rsha256.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sha256.c -o sha256.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o Rsha256.o sha256.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' byte-compiling package 'compiler' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' byte-compiling package 'base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' byte-compiling package 'tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c making hashtab.d from hashtab.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c -o io.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c size.c -o size.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sock.c -o sock.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c hashtab.c -o hashtab.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' byte-compiling package 'utils' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/fonts/Roboto mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static mkdir -p -- ../../../library/grDevices/icc make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making clippath.d from clippath.c making patterns.d from patterns.c making mask.d from mask.c making group.d from group.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c axis_scales.c -o axis_scales.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c chull.c -o chull.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c group.c -o group.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devCairo.c -o devCairo.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devPicTeX.c -o devPicTeX.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devPS.c -o devPS.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devQuartz.c -o devQuartz.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[8]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[9]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[10]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' x86_64-linux-gnu-gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/libpng16 -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cairoBM.c -o cairoBM.o x86_64-linux-gnu-gcc -shared -L"../../../../../lib" -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgobject-2.0 -lglib-2.0 -lcairo -lpng16 -lz -L"../../../../../lib" -lR -lm make[10]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[9]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[8]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' byte-compiling package 'grDevices' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c base.c -o base.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c par.c -o par.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stem.c -o stem.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' byte-compiling package 'graphics' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats mkdir -p -- ../../../library/stats/doc make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' mkdir -p -- ../../../library/stats/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c making permdist.d from permdist.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c kmeans.c -o kmeans.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ansari.c -o ansari.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bandwidths.c -o bandwidths.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c chisqsim.c -o chisqsim.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c d2x2xk.c -o d2x2xk.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fexact.c -o fexact.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c kendall.c -o kendall.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ks.c -o ks.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c line.c -o line.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c smooth.c -o smooth.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c prho.c -o prho.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c swilk.c -o swilk.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ksmooth.c -o ksmooth.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c loessc.c -o loessc.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c monoSpl.c -o monoSpl.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c isoreg.c -o isoreg.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Srunmed.c -o Srunmed.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dblcen.c -o dblcen.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c distance.c -o distance.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c hclust-utils.c -o hclust-utils.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c nls.c -o nls.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rWishart.c -o rWishart.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c HoltWinters.c -o HoltWinters.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c PPsum.c -o PPsum.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c arima.c -o arima.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c burg.c -o burg.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c filter.c -o filter.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mAR.c -o mAR.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pacf.c -o pacf.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c starma.c -o starma.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c port.c -o port.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c family.c -o family.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sbart.c -o sbart.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c approx.c -o approx.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c loglin.c -o loglin.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lowess.c -o lowess.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c massdist.c -o massdist.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lm.c -o lm.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c complete_cases.c -o complete_cases.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cov.c -o cov.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c deriv.c -o deriv.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c -o fft.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fourier.c -o fourier.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c model.c -o model.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c distn.c -o distn.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c zeroin.c -o zeroin.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rcont.c -o rcont.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c influence.c -o influence.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c permdist.c -o permdist.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bsplvd.f -o bsplvd.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bvalue.f -o bvalue.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bvalus.f -o bvalus.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c loessf.f -o loessf.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ppr.f -o ppr.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c qsbart.f -o qsbart.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sgram.f -o sgram.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sinerp.f -o sinerp.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sslvrg.f -o sslvrg.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c stxwx.f -o stxwx.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hclust.f -o hclust.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c kmns.f -o kmns.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c eureka.f -o eureka.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c stl.f -o stl.o x86_64-linux-gnu-gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -msse2 -mfpmath=sse -c portsrc.f -o portsrc.o x86_64-linux-gnu-gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lminfl.f -o lminfl.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o permdist.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' byte-compiling package 'stats' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' mkdir -p -- ../../../library/methods/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c do_substitute_direct.c -o do_substitute_direct.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c methods_list_dispatch.c -o methods_list_dispatch.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c slot.c -o slot.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c class_support.c -o class_support.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c tests.c -o tests.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' mkdir -p -- ../../../library/grid/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' making clippath.d from clippath.c making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making mask.d from mask.c making matrix.d from matrix.c making path.d from path.c making register.d from register.c making state.d from state.c making typeset.d from typeset.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gpar.c -o gpar.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c grid.c -o grid.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c just.c -o just.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c layout.c -o layout.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.c -o matrix.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c path.c -o path.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c register.c -o register.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c state.c -o state.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c typeset.c -o typeset.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c unit.c -o unit.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c viewport.c -o viewport.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' byte-compiling package 'grid' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' mkdir -p -- ../../../library/splines/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' making splines.d from splines.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' byte-compiling package 'splines' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' byte-compiling package 'stats4' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk.c -o tcltk.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk_unix.c -o tcltk_unix.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -L/usr/lib/x86_64-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' byte-compiling package 'tcltk' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rngstream.c -o rngstream.o x86_64-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fork.c -o fork.o x86_64-linux-gnu-gcc -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' byte-compiling package 'parallel' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' installing parsed NAMESPACE files installing R bibliographies installing R dictionaries make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/tests' you should 'make docs' now ... make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410' (cd src/nmath/standalone; \ /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -D_REENTRANT" \ CC=x86_64-linux-gnu-gcc \ CXX=x86_64-linux-gnu-g++ \ F77=x86_64-linux-gnu-gfortran \ R_GZIPCMD="/bin/gzip -n" \ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \ shared static ) make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' (cd ../../include; /usr/bin/make Rmath.h) make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' Copying source files make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.lo x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.lo x86_64-linux-gnu-gcc -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.o x86_64-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o x86_64-linux-gnu-ranlib libRmath.a make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' R_GZIPCMD="/bin/gzip -n" \ /usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example" make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/etc' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/share' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.5.3.20260410"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' /build/reproducible-path/r-base-4.5.3.20260410/lib/libR.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' /build/reproducible-path/r-base-4.5.3.20260410/bin/exec/R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' /build/reproducible-path/r-base-4.5.3.20260410/modules/R_X11.so is unchanged /build/reproducible-path/r-base-4.5.3.20260410/modules/R_de.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/profile' building system startup profile make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/profile' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' building package 'translations' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' building package 'base' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' building package 'tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' all.R is unchanged make[5]: '../../../library/tools/misc/wre.txt' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' building package 'compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' building package 'utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[9]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[10]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[9]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[8]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' building package 'graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' building package 'stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' building package 'datasets' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' building package 'methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' building package 'grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' building package 'splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' building package 'stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' building package 'parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' installing parsed NAMESPACE files installing R bibliographies installing R dictionaries make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/tests' you should 'make docs' now ... make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' creating doc/NEWS creating doc/NEWS.pdf make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' creating doc/manual/R-FAQ.html Cannot find a locale compatible with document strings translations creating doc/manual/version.texi creating doc/manual/R-admin.html Cannot find a locale compatible with document strings translations creating doc/manual/R-data.html Cannot find a locale compatible with document strings translations creating doc/manual/R-exts.html Cannot find a locale compatible with document strings translations creating doc/manual/R-intro.html Cannot find a locale compatible with document strings translations creating doc/manual/R-ints.html Cannot find a locale compatible with document strings translations creating doc/manual/R-lang.html Cannot find a locale compatible with document strings translations make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' installing parsed Rd make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' building/updating package metadata ... make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' writing package indices make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410' /usr/bin/make javaconf make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/etc' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/share' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.5.3.20260410"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' /build/reproducible-path/r-base-4.5.3.20260410/lib/libR.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' /build/reproducible-path/r-base-4.5.3.20260410/bin/exec/R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' /build/reproducible-path/r-base-4.5.3.20260410/modules/R_X11.so is unchanged /build/reproducible-path/r-base-4.5.3.20260410/modules/R_de.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/profile' building system startup profile make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/profile' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' building package 'translations' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/translations' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' building package 'base' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' building package 'tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' all.R is unchanged make[5]: '../../../library/tools/misc/wre.txt' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' building package 'compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/compiler' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' building package 'utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/utils' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[9]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[10]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[9]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[8]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src/cairo' make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grDevices' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' building package 'graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/graphics' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' building package 'stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' building package 'datasets' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/datasets' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' building package 'methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/methods' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' building package 'grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/grid' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' building package 'splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/splines' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' building package 'stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/stats4' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk/src' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/tcltk' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' building package 'parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[6]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/parallel' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library/base' installing parsed NAMESPACE files installing R bibliographies installing R dictionaries make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/tests' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410' configuring Java ... Java interpreter : /usr/lib/jvm/default-java/bin/java Java version : 25.0.3-ea Java home path : /usr/lib/jvm/default-java Java compiler : /usr/lib/jvm/default-java/bin/javac Java headers gen.: Java archive tool: /usr/lib/jvm/default-java/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm using C compiler: ‘x86_64-linux-gnu-gcc (Debian 15.2.0-16) 15.2.0’ make[3]: Entering directory '/tmp/Rjavareconf.uJrTkj' x86_64-linux-gnu-gcc -I"/build/reproducible-path/r-base-4.5.3.20260410/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest.o x86_64-linux-gnu-gcc -shared -L/build/reproducible-path/r-base-4.5.3.20260410/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/build/reproducible-path/r-base-4.5.3.20260410/lib -lR make[3]: Leaving directory '/tmp/Rjavareconf.uJrTkj' JAVA_HOME : /usr/lib/jvm/default-java Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /build/reproducible-path/r-base-4.5.3.20260410 Done. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410' make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410' touch make-arch-stamp *** install-arch *** dh_testdir dh_testroot dh_prep -a dh_installdirs -A /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core /usr/bin/make DESTDIR=/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core install make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/m4' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/tools' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' installing doc ... mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/doc mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/man/man1 make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' installing doc/html ... mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/doc/html make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' installing doc/manual ... mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/doc/manual mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/doc/manual/images make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/etc' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/etc installing etc ... make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/share' installing share ... mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/R mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/bibliographies mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/dictionaries mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/encodings mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/java mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/licenses mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/make mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/Rd mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/Rd/macros mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/sh mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/texmf mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/texmf/tex/latex make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/bin make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include/R_ext' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/include/R_ext make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/blas' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/blas' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tre' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tzone' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/tzone' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/xdr' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/xdr' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/intl' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra/intl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/pkgconfig make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/bin/exec make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/lib make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/modules make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/library installing packages ... building HTML index ... make[3]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/tests' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/tests' make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410' (cd src/unix; \ rm -vf Rscript /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/bin/Rscript; \ /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -D_REENTRANT" \ CC=x86_64-linux-gnu-gcc \ CXX=x86_64-linux-gnu-g++ \ F77=x86_64-linux-gnu-gfortran \ RHOME=/usr/lib/R \ DESTDIR=/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core \ install-Rscript ) removed 'Rscript' removed '/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/bin/Rscript' make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' x86_64-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.3.20260410/src/unix=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/unix' #ls -ltr /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/bin/ #strings src/unix/Rscript cp -vax src/unix/Rscript /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/bin/ 'src/unix/Rscript' -> '/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/bin/Rscript' #ls -ltr /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/bin/ #strings /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/bin/Rscript (cd src/nmath/standalone; \ /usr/bin/make DESTDIR=/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core install ) make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/include' /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/src/nmath/standalone' chmod a+x /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/share/sh/echo.sh rm -v /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/COPYING removed '/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/COPYING' (cd /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/; \ ln -s ../../share/common-licenses/GPL-2 COPYING) rm -v /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/doc/COPYING removed '/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/doc/COPYING' (cd /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/doc; \ ln -s ../../../share/common-licenses/GPL-2 COPYING) (cd /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/texmf/tex/latex && \ ln -s ../../../R/share/texmf R) dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-html make prefix=/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr \ rdocdir=/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/R/doc \ install-pdf make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ............................................ collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ................ collecting LaTeX docs for package 'grDevices' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX ............................... collecting LaTeX docs for package 'datasets' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'grid' ... Converting parsed Rd's to LaTeX .......... collecting LaTeX docs for package 'splines' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'stats4' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'compiler' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX . PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2025-11-01> L3 programming layer <2026-01-19> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] No file fullrefman.toc. (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [1{/usr/share/texli ve/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}] [2] Underfull \hbox (badness 6252) in paragraph at lines 150--158 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 150--158 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 150--158 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 150--158 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 150--158 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 338--341 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 573--579 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when \TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 `[] [43] [44] [45] [46] [47] Underfull \hbox (badness 1721) in paragraph at lines 2977--2981 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 2538) in paragraph at lines 3469--3472 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [55] [56] [57] [58] [59] Underfull \vbox (badness 3803) has occurred while \output is active [60] [61] [62] [63] [64] [65] [66] [67] Underfull \hbox (badness 10000) in paragraph at lines 4265--4267 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Underfull \hbox (badness 2521) in paragraph at lines 5623--5625 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [109] [110] [111] [112] [113] [114] [115] [116] [117] Underfull \hbox (badness 2253) in paragraph at lines 7557--7562 []\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn ection[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2846) in paragraph at lines 7557--7562 []\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class [118] [119] [120] [121] Underfull \hbox (badness 2261) in paragraph at lines 7873--7878 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [122] [123] [124] Underfull \vbox (badness 10000) has occurred while \output is active [125] [126] [127] [128] [129] [130] [131] [132] [133] Underfull \hbox (badness 2096) in paragraph at lines 8618--8622 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [134] [135] Underfull \hbox (badness 2351) in paragraph at lines 8734--8737 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [136] [137] [138] [139] [140] Underfull \hbox (badness 4479) in paragraph at lines 9051--9062 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [141] [142] [143] [144] [145] [146] Underfull \hbox (badness 2698) in paragraph at lines 9465--9471 []\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is. finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 1629) in paragraph at lines 9492--9504 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9492--9504 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [147] [148] [149] Underfull \hbox (badness 3657) in paragraph at lines 9692--9694 [][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac -tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 , [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 1178) in paragraph at lines 10351--10355 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 2744) in paragraph at lines 12723--12725 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 2253) in paragraph at lines 14943--14945 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [229] Underfull \hbox (badness 1490) in paragraph at lines 14978--14981 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [230] Underfull \hbox (badness 1565) in paragraph at lines 15064--15068 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [231] Underfull \hbox (badness 4927) in paragraph at lines 15115--15117 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [232] [233] Underfull \hbox (badness 1466) in paragraph at lines 15266--15269 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 15397--15401 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15408--15411 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [236] [237] [238] [239] [240] Underfull \hbox (badness 3965) in paragraph at lines 15712--15716 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [241] [242] [243] [244] [245] [246] [247] [248] Underfull \hbox (badness 5260) in paragraph at lines 16225--16225 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [249] [250] [251] [252] [253] Underfull \hbox (badness 4429) in paragraph at lines 16517--16520 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [254] [255] Underfull \hbox (badness 10000) in paragraph at lines 16624--16626 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [256] Underfull \hbox (badness 2035) in paragraph at lines 16697--16701 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [257] Underfull \vbox (badness 10000) has occurred while \output is active [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 2452) in paragraph at lines 17323--17327 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17323--17327 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [267] [268] [269] Underfull \hbox (badness 1092) in paragraph at lines 17516--17521 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [270] [271] [272] Underfull \hbox (badness 6741) in paragraph at lines 17769--17773 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [273] [274] [275] [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \vbox (badness 10000) has occurred while \output is active [285] [286] [287] [288] [289] [290] [291] [292] [293] [294] [295] Underfull \hbox (badness 1769) in paragraph at lines 19283--19286 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [296] [297] [298] [299] [300] Underfull \hbox (badness 10000) in paragraph at lines 19592--19594 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19598--19607 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [301] [302] [303] [304] [305] [306] [307] [308] [309] Underfull \hbox (badness 1442) in paragraph at lines 20210--20212 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [310] [311] Underfull \hbox (badness 2452) in paragraph at lines 20306--20332 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 20306--20332 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 1248) in paragraph at lines 20704--20707 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [318] [319] [320] [321] [322] Underfull \hbox (badness 4739) in paragraph at lines 20975--20977 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [323] [324] [325] [326] [327] Underfull \vbox (badness 3803) has occurred while \output is active [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] Underfull \hbox (badness 2469) in paragraph at lines 22168--22173 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [342] [343] Underfull \hbox (badness 1675) in paragraph at lines 22255--22264 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 22265--22278 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 22313--22316 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 22313--22316 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [344] [345] Underfull \hbox (badness 1014) in paragraph at lines 22448--22453 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] [358] Underfull \hbox (badness 1264) in paragraph at lines 23309--23317 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [359] Underfull \hbox (badness 4441) in paragraph at lines 23344--23347 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] Underfull \hbox (badness 5231) in paragraph at lines 24169--24171 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] [384] [385] [386] [387] [388] [389] [390] Underfull \hbox (badness 6380) in paragraph at lines 25335--25341 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 25335--25341 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [391] [392] [393] [394] [395] [396] [397] [398] Underfull \hbox (badness 2790) in paragraph at lines 25848--25851 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25848--25851 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [399] [400] [401] [402] [403] Underfull \hbox (badness 1194) in paragraph at lines 26180--26183 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [404] [405] [406] Underfull \hbox (badness 2368) in paragraph at lines 26390--26396 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [407] [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 26783--26786 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 10000) in paragraph at lines 27435--27437 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 2443) in paragraph at lines 27928--27936 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [430] [431] [432] [433] [434] [435] [436] Underfull \hbox (badness 1881) in paragraph at lines 28360--28363 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 28385--28387 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [437] [438] Underfull \hbox (badness 2142) in paragraph at lines 28532--28536 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [439] Underfull \hbox (badness 1968) in paragraph at lines 28589--28594 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [440] [441] [442] Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28910--28913 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and [443] Underfull \hbox (badness 2689) in paragraph at lines 28936--28938 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28984--28989 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28990--29001 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28990--29001 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 29002--29005 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [444] [445] [446] [447] [448] [449] Underfull \hbox (badness 10000) in paragraph at lines 29420--29424 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [450] [451] [452] Underfull \hbox (badness 10000) in paragraph at lines 29569--29572 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [453] Underfull \hbox (badness 7925) in paragraph at lines 29651--29655 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29651--29655 []\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][] \T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29656--29665 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s, [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] Underfull \hbox (badness 2726) in paragraph at lines 30692--30695 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] Underfull \vbox (badness 3803) has occurred while \output is active [489] [490] [491] [492] [493] [494] [495] [496] [497] Underfull \hbox (badness 1533) in paragraph at lines 32526--32529 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [498] [499] [500] Underfull \hbox (badness 1163) in paragraph at lines 32698--32709 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] Underfull \hbox (badness 10000) in paragraph at lines 34382--34386 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 34382--34386 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 34403--34405 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 34406--34410 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [527] [528] Underfull \vbox (badness 10000) has occurred while \output is active [529] [530] [531] [532] [533] [534] [535] [536] Underfull \hbox (badness 1655) in paragraph at lines 35014--35016 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] Underfull \hbox (badness 2261) in paragraph at lines 36229--36234 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] Underfull \hbox (badness 3668) in paragraph at lines 37332--37336 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [573] Underfull \hbox (badness 10000) in paragraph at lines 37423--37434 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \vbox (badness 3803) has occurred while \output is active [594] [595] [596] [597] [598] [599] Underfull \hbox (badness 10000) in paragraph at lines 39086--39088 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [600] [601] [602] [603] [604] [605] Underfull \hbox (badness 2913) in paragraph at lines 39504--39508 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [606] [607] [608] [609] Underfull \hbox (badness 1072) in paragraph at lines 39755--39759 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39760--39764 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39800--39806 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39800--39806 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39800--39806 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [610] Underfull \hbox (badness 3009) in paragraph at lines 39815--39822 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [611] [612] [613] Underfull \hbox (badness 2644) in paragraph at lines 40050--40054 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 4144) in paragraph at lines 41632--41640 []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][ ][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary .data.frame[]\T1/ptm/m/n/10 ). In Underfull \hbox (badness 1158) in paragraph at lines 41642--41644 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [639] [640] [641] [642] [643] [644] [645] ignored error: Infinite glue shrinkage found in box being split [646] [647] [648] [649] Underfull \hbox (badness 1137) in paragraph at lines 42291--42297 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 42309--42314 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [650] [651] Underfull \hbox (badness 1616) in paragraph at lines 42432--42437 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [652] [653] [654] [655] Underfull \vbox (badness 3803) has occurred while \output is active [656] [657] [658] [659] [660] Underfull \hbox (badness 1472) in paragraph at lines 42980--42983 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [661] [662] [663] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 43192. [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 10000) in paragraph at lines 43937--43941 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] Underfull \hbox (badness 10000) in paragraph at lines 45135--45138 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [694] [695] [696] [697] [698] [699] Underfull \vbox (badness 10000) has occurred while \output is active [700] [701] [702] [703] [704] [705] [706] [707] Underfull \hbox (badness 1990) in paragraph at lines 46056--46064 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 46056--46064 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] Underfull \hbox (badness 1014) in paragraph at lines 47504--47507 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [730] [731] Underfull \hbox (badness 2401) in paragraph at lines 47638--47642 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [732] [733] Underfull \hbox (badness 3492) in paragraph at lines 47765--47767 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [734] [735] Underfull \hbox (badness 2111) in paragraph at lines 47851--47856 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 5417) in paragraph at lines 48517--48521 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [746] Underfull \hbox (badness 10000) in paragraph at lines 48578--48582 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [747]) (./compiler-pkg.tex [748] Chapter 2. [749] [750] [751] [752]) (./datasets-pkg.tex Chapter 3. [753] Underfull \hbox (badness 1199) in paragraph at lines 55--59 []\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN [754] [755] [756] [757] ignored error: Infinite glue shrinkage found in box being split [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co l = adjustcolor("thistle", 1/3))[] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [817] [818] [819] [820] Underfull \hbox (badness 10000) in paragraph at lines 4210--4216 []\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been avail-able at [821] [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]) (./grDevices-pkg.tex Chapter 4. [841] [842] [843] [844] [845] Underfull \hbox (badness 2221) in paragraph at lines 284--288 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 299--304 []\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1 0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1 0 in [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] Underfull \hbox (badness 1424) in paragraph at lines 925--927 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [856] Underfull \vbox (badness 3803) has occurred while \output is active [857] [858] [859] [860] Underfull \hbox (badness 5175) in paragraph at lines 1253--1255 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [861] [862] Underfull \hbox (badness 2512) in paragraph at lines 1372--1374 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [863] [864] [865] [866] [867] Underfull \hbox (badness 1490) in paragraph at lines 1672--1677 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1685--1689 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 1325) in paragraph at lines 2100--2110 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [875] Underfull \hbox (badness 10000) in paragraph at lines 2212--2214 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [876] [877] [878] Underfull \hbox (badness 6758) in paragraph at lines 2400--2403 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [879] [880] [881] [882] [883] [884] Underfull \hbox (badness 1694) in paragraph at lines 2759--2762 []\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T 1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to [885] [886] [887] [888] [889] [890] Underfull \hbox (badness 10000) in paragraph at lines 3171--3172 [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] Underfull \vbox (badness 3803) has occurred while \output is active [903] [904] [905] Underfull \hbox (badness 1484) in paragraph at lines 4137--4140 \T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki pedia . org / w / index . php ? title = HCL _ color _ space & [906] Underfull \vbox (badness 10000) has occurred while \output is active [907] [908] [909] [910] Underfull \hbox (badness 1418) in paragraph at lines 4463--4470 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [911] [912] [913] [914] Underfull \hbox (badness 1152) in paragraph at lines 4750--4757 []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 , [915] [916] [917] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4933 \aliasA{symbol}{plotmath}{symbol} ignored error: Infinite glue shrinkage found in box being split [918] ignored error: Infinite glue shrinkage found in box being split [919] [920] [921] Underfull \vbox (badness 3803) has occurred while \output is active [922] [923] Underfull \hbox (badness 1584) in paragraph at lines 5325--5327 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5329--5336 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [924] [925] [926] [927] Underfull \hbox (badness 1377) in paragraph at lines 5631--5636 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [928] [929] Underfull \hbox (badness 1377) in paragraph at lines 5735--5740 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [930] Underfull \hbox (badness 7344) in paragraph at lines 5804--5806 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [931] [932] Underfull \hbox (badness 2035) in paragraph at lines 5944--5953 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5944--5953 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5944--5953 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [933] Underfull \hbox (badness 10000) in paragraph at lines 6010--6015 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [934] [935] [936] Underfull \hbox (badness 1546) in paragraph at lines 6151--6159 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 3343) in paragraph at lines 6595--6598 []\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla y-ing the Graph-ics En- Underfull \hbox (badness 7740) in paragraph at lines 6595--6598 \T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech . wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 / [943] [944] Underfull \hbox (badness 10000) in paragraph at lines 6699--6702 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [945] [946] [947] [948] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] Underfull \hbox (badness 1189) in paragraph at lines 7565--7567 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [959] Underfull \hbox (badness 10000) in paragraph at lines 7670--7672 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [960] [961] [962] [963] [964] [965] [966] [967] [968]) (./graphics-pkg.tex Chapter 5. [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] Underfull \vbox (badness 3803) has occurred while \output is active [980] [981] [982] [983] [984] [985] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [986] Underfull \vbox (badness 10000) has occurred while \output is active [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 4634) in paragraph at lines 1459--1462 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [993] [994] [995] [996] [997] [998] [999] [1000] [1001] Underfull \vbox (badness 3803) has occurred while \output is active [1002] [1003] [1004] [1005] [1006] [1007] [1008] Underfull \hbox (badness 1728) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [1009] [1010] Underfull \hbox (badness 1009) in paragraph at lines 2555--2562 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] Underfull \vbox (badness 10000) has occurred while \output is active [1035] [1036] [1037] [1038] [1039] [1040] Underfull \vbox (badness 3803) has occurred while \output is active [1041] [1042] [1043] [1044] [1045] [1046] [1047] Underfull \hbox (badness 3229) in paragraph at lines 4852--4857 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1048] [1049] [1050] [1051] [1052] Underfull \hbox (badness 1107) in paragraph at lines 5352--5358 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1053] [1054] Underfull \hbox (badness 10000) in paragraph at lines 5481--5484 [1055 ] Underfull \hbox (badness 10000) in paragraph at lines 5542--5544 Underfull \vbox (badness 10000) has occurred while \output is active [1056] [1057 ] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6231 \aliasA{plot}{plot.default}{plot} [1067] Underfull \hbox (badness 10000) in paragraph at lines 6276--6281 []\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1 0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are Underfull \hbox (badness 10000) in paragraph at lines 6276--6281 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its are com-puted from [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168 [][] [1082 ] [1083] Underfull \vbox (badness 10000) has occurred while \output is active [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 4954) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1117] [1118] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9392 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9392 \HeaderA{units}{Graphical Units}{units} [1119] [1120] [1121] [1122]) (./grid-pkg.tex Chapter 6. [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 2680) in paragraph at lines 552--555 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1132] [1133] [1134] [1135] [1136] ignored error: Infinite glue shrinkage found in box being split [1137] [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 4279) in paragraph at lines 1191--1200 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \hbox (badness 10000) in paragraph at lines 3106--3108 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] Underfull \hbox (badness 1067) in paragraph at lines 4845--4848 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1205] [1206] [1207] [1208] [1209] [1210] Underfull \hbox (badness 7256) in paragraph at lines 5196--5198 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1211] [1212] [1213] [1214] [1215] [1216] [1217] Underfull \hbox (badness 2142) in paragraph at lines 5652--5656 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1218] [1219] Underfull \hbox (badness 4699) in paragraph at lines 5734--5739 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251]) (./methods-pkg.tex [1252] Chapter 7. [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] Underfull \vbox (badness 3803) has occurred while \output is active [1261] Underfull \vbox (badness 10000) has occurred while \output is active [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] Underfull \hbox (badness 2237) in paragraph at lines 1393--1395 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 10000) in paragraph at lines 1995--2000 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1995--2000 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1281] [1282] [1283] Underfull \hbox (badness 2213) in paragraph at lines 2227--2232 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1289] [1290] Underfull \hbox (badness 1132) in paragraph at lines 2732--2736 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1291] Underfull \hbox (badness 1033) in paragraph at lines 2768--2773 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \hbox (badness 1102) in paragraph at lines 3331--3333 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1299] [1300] [1301] [1302] [1303] [1304] Underfull \hbox (badness 10000) in paragraph at lines 3668--3677 []\T1/ptm/m/n/10 The [1305] Underfull \hbox (badness 10000) in paragraph at lines 3788--3789 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1306] Underfull \hbox (badness 10000) in paragraph at lines 3872--3873 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] Underfull \hbox (badness 1769) in paragraph at lines 4515--4521 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4515--4521 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1317] [1318] [1319] Underfull \vbox (badness 5681) has occurred while \output is active [1320] [1321] [1322] [1323] Underfull \vbox (badness 1681) has occurred while \output is active [1324] [1325] Underfull \vbox (badness 10000) has occurred while \output is active [1326] Underfull \vbox (badness 10000) has occurred while \output is active [1327] [1328] [1329] Underfull \hbox (badness 4036) in paragraph at lines 5424--5427 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1330] Underfull \hbox (badness 3803) in paragraph at lines 5497--5499 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1331] [1332] [1333] [1334] Underfull \hbox (badness 1087) in paragraph at lines 5731--5736 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] Underfull \hbox (badness 1675) in paragraph at lines 6448--6454 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1343] [1344] [1345] [1346] Underfull \vbox (badness 10000) has occurred while \output is active [1347] [1348] [1349] [1350] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1351] [1352] [1353] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7234 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7236 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7237 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps }) has been already used, duplicate ignored \relax l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7240 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7241 \aliasA{Summary}{S4groupGeneric}{Summary} [1354] Underfull \hbox (badness 2050) in paragraph at lines 7303--7307 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1355] [1356] [1357] Underfull \hbox (badness 1286) in paragraph at lines 7496--7498 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] Underfull \hbox (badness 2197) in paragraph at lines 10545--10548 []\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi 4/m/sl/10 https : / / johnmchambers . su . domains / [1400] Underfull \hbox (badness 1852) in paragraph at lines 10623--10627 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1401] [1402] [1403] [1404]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1405] [1406] [1407] [1408] [1409] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] Underfull \hbox (badness 3386) in paragraph at lines 1423--1426 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1427] [1428] [1429]) (./splines-pkg.tex [1430] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446]) (./stats-pkg.tex Chapter 10. [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] Underfull \hbox (badness 1412) in paragraph at lines 903--905 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] Underfull \hbox (badness 2503) in paragraph at lines 1394--1397 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1469] [1470] [1471] [1472] [1473] [1474] [1475] Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798 [] \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq( rx[1], rx[2], length.out = 25) }[] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] Underfull \hbox (badness 2503) in paragraph at lines 3626--3629 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1504] [1505] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3741. [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] Underfull \hbox (badness 3989) in paragraph at lines 4916--4923 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 2556) in paragraph at lines 5581--5584 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \hbox (badness 2503) in paragraph at lines 5997--6001 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 7081) in paragraph at lines 6802--6805 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6806--6808 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1555] [1556] [1557] [1558] [1559] [1560] Underfull \vbox (badness 10000) has occurred while \output is active [1561] [1562] [1563] Underfull \vbox (badness 10000) has occurred while \output is active [1564] [1565] [1566] [1567] [1568] Underfull \hbox (badness 10000) in paragraph at lines 7704--7707 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/ zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the [1569] [1570] [1571] Underfull \hbox (badness 2635) in paragraph at lines 7848--7851 []\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T 1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view = [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 1960) in paragraph at lines 8597--8600 []\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which case [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] Underfull \hbox (badness 2626) in paragraph at lines 9439--9442 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1597] [1598] Underfull \hbox (badness 2503) in paragraph at lines 9546--9550 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] Underfull \hbox (badness 1253) in paragraph at lines 10301--10306 []\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo r all pa-ram-e-ters: Underfull \hbox (badness 1337) in paragraph at lines 10306--10309 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1610] [1611] [1612] Underfull \vbox (badness 10000) has occurred while \output is active [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 4518) in paragraph at lines 11250--11255 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1625] [1626] [1627] [1628] [1629] Underfull \hbox (badness 2142) in paragraph at lines 11621--11624 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11640--11643 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1630] Underfull \hbox (badness 1708) in paragraph at lines 11702--11706 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1631] [1632] [1633] Underfull \hbox (badness 1005) in paragraph at lines 11924--11928 []\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean dis-tances [1634] [1635] [1636] Underfull \hbox (badness 1694) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12627 \aliasA{hat}{influence.measures}{hat} [1646] [1647] Underfull \hbox (badness 1484) in paragraph at lines 12783--12785 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] Underfull \hbox (badness 10000) in paragraph at lines 13391--13393 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1659] [1660] [1661] [1662] [1663] Underfull \hbox (badness 2894) in paragraph at lines 13735--13739 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 1281) in paragraph at lines 14478--14482 []\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and Re-lated Re-gres-sion Meth- [1676] Underfull \hbox (badness 4518) in paragraph at lines 14567--14572 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] [1686] Underfull \hbox (badness 1596) in paragraph at lines 15205--15208 \T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(, ...)[]\T1/ptm/m/n/10 , he nce, e.g., []\T1/zi4/m/sl/10 cutoff = []\T1/ptm/m/n/10 ; ig-nored for [1687] Underfull \hbox (badness 4518) in paragraph at lines 15263--15268 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1688] [1689] Underfull \hbox (badness 6412) in paragraph at lines 15404--15408 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 15411--15413 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] Underfull \hbox (badness 2503) in paragraph at lines 16503--16507 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1708] [1709] Underfull \vbox (badness 3803) has occurred while \output is active [1710] [1711] [1712] [1713] [1714] [1715] [1716] Underfull \hbox (badness 10000) in paragraph at lines 17024--17030 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 17024--17030 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] Underfull \hbox (badness 1158) in paragraph at lines 18695--18698 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1743] [1744] Underfull \vbox (badness 3803) has occurred while \output is active [1745] Underfull \vbox (badness 10000) has occurred while \output is active [1746] Underfull \vbox (badness 10000) has occurred while \output is active [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] Underfull \hbox (badness 1377) in paragraph at lines 19758--19763 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19763--19766 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19776--19780 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19776--19780 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19784--19788 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1761] [1762] [1763] Underfull \vbox (badness 10000) has occurred while \output is active [1764] Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] Underfull \hbox (badness 1337) in paragraph at lines 20505--20508 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] Underfull \hbox (badness 10000) in paragraph at lines 20985--20991 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1782] [1783] [1784] [1785] [1786] [1787] [1788] Underfull \hbox (badness 1194) in paragraph at lines 21419--21422 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 2503) in paragraph at lines 21801--21804 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1795] Underfull \hbox (badness 3919) in paragraph at lines 21828--21830 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 22168--22171 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 23168--23174 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 1337) in paragraph at lines 24658--24664 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] Underfull \hbox (badness 1436) in paragraph at lines 25147--25150 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, Underfull \hbox (badness 1009) in paragraph at lines 25150--25153 []\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro rs when []\T1/zi4/m/sl/10 j <- [1850] [1851] Underfull \hbox (badness 10000) in paragraph at lines 25316--25317 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1824) in paragraph at lines 26289--26295 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 26289--26295 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 26310--26313 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] Underfull \vbox (badness 10000) has occurred while \output is active [1876] [1877] Underfull \hbox (badness 2165) in paragraph at lines 26894--26899 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1878] [1879] [1880] Underfull \hbox (badness 1867) in paragraph at lines 27102--27104 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 27118--27122 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1881] [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] Underfull \vbox (badness 10000) has occurred while \output is active [1907] Underfull \hbox (badness 3514) in paragraph at lines 28799--28804 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1908] [1909] [1910] [1911] [1912] Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 29069--29075 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1913] Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1914] [1915] [1916] Underfull \hbox (badness 3514) in paragraph at lines 29302--29307 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1917] [1918] Underfull \hbox (badness 3514) in paragraph at lines 29389--29394 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1919] Underfull \hbox (badness 3514) in paragraph at lines 29454--29459 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1920] [1921] Underfull \hbox (badness 3514) in paragraph at lines 29548--29553 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1922] Underfull \hbox (badness 6691) in paragraph at lines 29640--29645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] Underfull \hbox (badness 4024) in paragraph at lines 30135--30138 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] Underfull \hbox (badness 5431) in paragraph at lines 30753--30755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1941] [1942] [1943] [1944] Underfull \hbox (badness 5431) in paragraph at lines 30971--30974 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1337) in paragraph at lines 31286--31290 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1950] [1951] [1952] Underfull \hbox (badness 1127) in paragraph at lines 31428--31431 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1953] [1954] [1955] Underfull \hbox (badness 1616) in paragraph at lines 31646--31649 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1956] [1957] [1958] [1959] [1960] [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \hbox (badness 3557) in paragraph at lines 32900--32904 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1976] [1977] [1978] Underfull \vbox (badness 10000) has occurred while \output is active [1979] [1980] [1981] Underfull \hbox (badness 1337) in paragraph at lines 33268--33272 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] Underfull \hbox (badness 1337) in paragraph at lines 33816--33820 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1991] [1992] [1993] [1994] [1995] [1996] Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1997] [1998] [1999] [2000] [2001]) (./stats4-pkg.tex [2002] Chapter 11. [2003] [2004] [2005] Underfull \vbox (badness 10000) has occurred while \output is active [2006] Underfull \vbox (badness 10000) has occurred while \output is active [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.506 ...Package \pkg{stats4}}{show.Rdash.methods} [2011] [2012] [2013]) (./tcltk-pkg.tex [2014] Chapter 12. [2015] [2016] [2017] [2018] [2019] [2020] [2021] Underfull \vbox (badness 10000) has occurred while \output is active [2022] Underfull \vbox (badness 10000) has occurred while \output is active [2023] Underfull \hbox (badness 1546) in paragraph at lines 687--694 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [2024] [2025] [2026] [2027] [2028] Underfull \vbox (badness 10000) has occurred while \output is active [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036]) (./tools-pkg.tex Chapter 13. [2037] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2038] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2039] [2040] [2041] Underfull \hbox (badness 1308) in paragraph at lines 326--339 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 326--339 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 326--339 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 326--339 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2042] [2043] Underfull \hbox (badness 3039) in paragraph at lines 429--431 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2044] Underfull \hbox (badness 1142) in paragraph at lines 501--505 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2045] [2046] [2047] [2048] [2049] [2050] [2051] ignored error: Infinite glue shrinkage found in box being split [2052] [2053] [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 1014) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1352--1354 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2059] Underfull \hbox (badness 10000) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2060] [2061] [2062] [2063] [2064] [2065] Underfull \hbox (badness 10000) in paragraph at lines 1783--1794 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR AN_check_details() []\T1/ptm/m/n/10 and [2066] [2067] Underfull \hbox (badness 4096) in paragraph at lines 1934--1942 \T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2068] Underfull \hbox (badness 1082) in paragraph at lines 1944--1946 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2069] [2070] [2071] [2072] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] Underfull \hbox (badness 3386) in paragraph at lines 2736--2739 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2081] [2082] [2083] Underfull \hbox (badness 4096) in paragraph at lines 2899--2907 \T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2084] [2085] [2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] Underfull \hbox (badness 1424) in paragraph at lines 3933--3935 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2100] [2101] [2102] Underfull \hbox (badness 4792) in paragraph at lines 4106--4107 []\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 4717--4719 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2113] [2114] [2115] [2116] [2117] [2118] Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping") # "a Small Fox is .." (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha nge)% i.e. BUG[] [2119] [2120] [2121] Underfull \hbox (badness 1796) in paragraph at lines 5256--5261 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = [2122] Underfull \hbox (badness 1838) in paragraph at lines 5342--5348 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 5342--5348 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2123] [2124] [2125] [2126] [2127] [2128] Underfull \hbox (badness 2197) in paragraph at lines 5693--5703 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : [2129] Underfull \hbox (badness 1571) in paragraph at lines 5768--5772 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2130] [2131] [2132] [2133]) (./utils-pkg.tex [2134] Chapter 14. [2135] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 10000) in paragraph at lines 727--733 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 727--733 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2146] [2147] [2148] Underfull \hbox (badness 3861) in paragraph at lines 942--947 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2149] [2150] [2151] Underfull \hbox (badness 10000) in paragraph at lines 1146--1148 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2152] [2153] [2154] Underfull \vbox (badness 3803) has occurred while \output is active [2155] [2156] [2157] [2158] [2159] [2160] [2161] Underfull \hbox (badness 3919) in paragraph at lines 1755--1758 []\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer red from the Underfull \hbox (badness 1371) in paragraph at lines 1765--1767 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] Underfull \hbox (badness 2057) in paragraph at lines 2387--2389 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2172] [2173] Underfull \hbox (badness 2150) in paragraph at lines 2473--2480 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2473--2480 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2174] [2175] [2176] [2177] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2756 ... the Clipboard in MS Windows}{clipboard} [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] Underfull \hbox (badness 6842) in paragraph at lines 4074--4079 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2199] Underfull \hbox (badness 1430) in paragraph at lines 4156--4160 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2200] Underfull \hbox (badness 1184) in paragraph at lines 4232--4248 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4232--4248 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4232--4248 \T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2201] [2202] Underfull \hbox (badness 10000) in paragraph at lines 4382--4384 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5160 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5160 ...mat Unordered and Ordered Lists}{format} [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] Underfull \hbox (badness 1622) in paragraph at lines 5684--5688 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2224] [2225] [2226] [2227] [2228] [2229] Underfull \hbox (badness 1448) in paragraph at lines 6069--6074 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] Underfull \hbox (badness 1371) in paragraph at lines 6629--6631 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2238] [2239] Underfull \hbox (badness 1502) in paragraph at lines 6718--6724 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6718--6724 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2240] [2241] [2242] Underfull \hbox (badness 10000) in paragraph at lines 6904--6913 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6904--6913 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2243] Underfull \hbox (badness 2150) in paragraph at lines 6967--6970 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2244] [2245] Underfull \hbox (badness 3118) in paragraph at lines 7105--7107 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2246] [2247] Underfull \hbox (badness 1325) in paragraph at lines 7283--7287 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2248] [2249] Underfull \hbox (badness 1424) in paragraph at lines 7375--7378 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2250] Underfull \hbox (badness 3219) in paragraph at lines 7457--7464 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7457--7464 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7457--7464 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7457--7464 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no Underfull \hbox (badness 1629) in paragraph at lines 7470--7472 []\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from [][]$\T1/zi4/m/it/10 https : / / CRAN . [2251] Underfull \hbox (badness 1024) in paragraph at lines 7586--7589 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2252] Underfull \hbox (badness 10000) in paragraph at lines 7620--7625 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2253] Underfull \hbox (badness 5133) in paragraph at lines 7685--7689 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] Underfull \hbox (badness 10000) in paragraph at lines 8356--8358 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2265] [2266] [2267] [2268] [2269] [2270] [2271] [2272] ignored error: Infinite glue shrinkage found in box being split [2273] [2274] Underfull \hbox (badness 3690) in paragraph at lines 8992--8995 []\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in g[][][] for the pack-age [2275] [2276] [2277] Underfull \hbox (badness 2310) in paragraph at lines 9145--9150 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2278] [2279] [2280] [2281] [2282] [2283] [2284] [2285] [2286] Underfull \hbox (badness 1248) in paragraph at lines 9725--9729 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2287] [2288] [2289] [2290] [2291] Underfull \hbox (badness 2600) in paragraph at lines 10024--10027 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300] Underfull \hbox (badness 1097) in paragraph at lines 10662--10665 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2301] [2302] Underfull \hbox (badness 3000) in paragraph at lines 10798--10803 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] Underfull \hbox (badness 2134) in paragraph at lines 11395--11400 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2312] Underfull \hbox (badness 10000) in paragraph at lines 11451--11456 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11451--11456 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] Underfull \hbox (badness 6110) in paragraph at lines 11951--11954 \T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki pedia . org / w / index . php ? title = Roman _ numerals & [2321] [2322] [2323] [2324] [2325] [2326] [2327] Underfull \hbox (badness 4060) in paragraph at lines 12394--12397 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2328] [2329] [2330] [2331] Underfull \hbox (badness 2150) in paragraph at lines 12673--12675 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2332] [2333] Underfull \hbox (badness 1742) in paragraph at lines 12754--12762 []\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/ it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/ m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc []\T1/ptm/m/n/10 and [2334] [2335] [2336] Underfull \hbox (badness 10000) in paragraph at lines 12952--12960 []\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/ m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo c[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12973--12977 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 13006--13012 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2337] Underfull \hbox (badness 2762) in paragraph at lines 13021--13027 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix.Rdash.class} has been referenced but does not exist, replaced by a 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Output written on tctt0900.600gf (128 characters, 17564 bytes). Transcript written on tctt0900.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tctt0900.600pk: successfully generated. Output written on fullrefman.pdf (2397 pages, 5645529 bytes). Transcript written on fullrefman.log. This is makeindex, version 2.17 [TeX Live 2025] (kpathsea + Thai support). Scanning input file fullrefman.idx...................done (15429 entries accepted, 43 rejected). Sorting entries.................................................................................................................................................................done (236504 comparisons). Generating output file fullrefman.ind..................done (15425 lines written, 55 warnings). Output written in fullrefman.ind. Transcript written in fullrefman.ilg. 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 150--158 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 150--158 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 150--158 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 150--158 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 150--158 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 338--341 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 573--579 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when \TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 `[] [43] [44] [45] [46] [47] Underfull \hbox (badness 1721) in paragraph at lines 2977--2981 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 2538) in paragraph at lines 3469--3472 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [55] [56] [57] [58] [59] Underfull \vbox (badness 3803) has occurred while \output is active [60] [61] [62] [63] [64] [65] [66] [67] Underfull \hbox (badness 10000) in paragraph at lines 4265--4267 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Underfull \hbox (badness 2521) in paragraph at lines 5623--5625 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [109] [110] [111] [112] [113] [114] [115] [116] [117] Underfull \hbox (badness 2253) in paragraph at lines 7557--7562 []\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn ection[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2846) in paragraph at lines 7557--7562 []\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class [118] [119] [120] [121] Underfull \hbox (badness 2261) in paragraph at lines 7873--7878 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [122] [123] [124] Underfull \vbox (badness 10000) has occurred while \output is active [125] [126] [127] [128] [129] [130] [131] [132] [133] Underfull \hbox (badness 2096) in paragraph at lines 8618--8622 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [134] [135] Underfull \hbox (badness 2351) in paragraph at lines 8734--8737 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [136] [137] [138] [139] [140] Underfull \hbox (badness 4479) in paragraph at lines 9051--9062 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [141] [142] [143] [144] [145] [146] Underfull \hbox (badness 2698) in paragraph at lines 9465--9471 []\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is. finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 1629) in paragraph at lines 9492--9504 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9492--9504 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [147] [148] [149] Underfull \hbox (badness 3657) in paragraph at lines 9692--9694 [][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac -tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 , [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 1178) in paragraph at lines 10351--10355 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 2744) in paragraph at lines 12723--12725 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 2253) in paragraph at lines 14943--14945 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [229] Underfull \hbox (badness 1490) in paragraph at lines 14978--14981 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [230] Underfull \hbox (badness 1565) in paragraph at lines 15064--15068 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [231] Underfull \hbox (badness 4927) in paragraph at lines 15115--15117 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [232] [233] Underfull \hbox (badness 1466) in paragraph at lines 15266--15269 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 15397--15401 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15408--15411 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [236] [237] [238] [239] [240] Underfull \hbox (badness 3965) in paragraph at lines 15712--15716 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [241] [242] [243] [244] [245] [246] [247] [248] Underfull \hbox (badness 5260) in paragraph at lines 16225--16225 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [249] [250] [251] [252] [253] Underfull \hbox (badness 4429) in paragraph at lines 16517--16520 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [254] [255] Underfull \hbox (badness 10000) in paragraph at lines 16624--16626 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [256] Underfull \hbox (badness 2035) in paragraph at lines 16697--16701 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [257] Underfull \vbox (badness 10000) has occurred while \output is active [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 2452) in paragraph at lines 17323--17327 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17323--17327 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [267] [268] [269] Underfull \hbox (badness 1092) in paragraph at lines 17516--17521 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [270] [271] [272] Underfull \hbox (badness 6741) in paragraph at lines 17769--17773 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [273] [274] [275] [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \vbox (badness 10000) has occurred while \output is active [285] [286] [287] [288] [289] [290] [291] [292] [293] [294] [295] Underfull \hbox (badness 1769) in paragraph at lines 19283--19286 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [296] [297] [298] [299] [300] Underfull \hbox (badness 10000) in paragraph at lines 19592--19594 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19598--19607 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [301] [302] [303] [304] [305] [306] [307] [308] [309] Underfull \hbox (badness 1442) in paragraph at lines 20210--20212 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [310] [311] Underfull \hbox (badness 2452) in paragraph at lines 20306--20332 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 20306--20332 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 1248) in paragraph at lines 20704--20707 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [318] [319] [320] [321] [322] Underfull \hbox (badness 4739) in paragraph at lines 20975--20977 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [323] [324] [325] [326] [327] Underfull \vbox (badness 3803) has occurred while \output is active [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] Underfull \hbox (badness 2469) in paragraph at lines 22168--22173 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [342] [343] Underfull \hbox (badness 1675) in paragraph at lines 22255--22264 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 22265--22278 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 22313--22316 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 22313--22316 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [344] [345] Underfull \hbox (badness 1014) in paragraph at lines 22448--22453 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] [358] Underfull \hbox (badness 1264) in paragraph at lines 23309--23317 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [359] Underfull \hbox (badness 4441) in paragraph at lines 23344--23347 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] Underfull \hbox (badness 5231) in paragraph at lines 24169--24171 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] [384] [385] [386] [387] [388] [389] [390] Underfull \hbox (badness 6380) in paragraph at lines 25335--25341 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 25335--25341 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [391] [392] [393] [394] [395] [396] [397] [398] Underfull \hbox (badness 2790) in paragraph at lines 25848--25851 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25848--25851 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [399] [400] [401] [402] [403] Underfull \hbox (badness 1194) in paragraph at lines 26180--26183 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [404] [405] [406] Underfull \hbox (badness 2368) in paragraph at lines 26390--26396 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [407] [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 26783--26786 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 10000) in paragraph at lines 27435--27437 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 2443) in paragraph at lines 27928--27936 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [430] [431] [432] [433] [434] [435] [436] Underfull \hbox (badness 1881) in paragraph at lines 28360--28363 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 28385--28387 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [437] [438] Underfull \hbox (badness 2142) in paragraph at lines 28532--28536 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [439] Underfull \hbox (badness 1968) in paragraph at lines 28589--28594 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [440] [441] [442] Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28910--28913 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and [443] Underfull \hbox (badness 2689) in paragraph at lines 28936--28938 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28984--28989 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28990--29001 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28990--29001 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 29002--29005 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [444] [445] [446] [447] [448] [449] Underfull \hbox (badness 10000) in paragraph at lines 29420--29424 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [450] [451] [452] Underfull \hbox (badness 10000) in paragraph at lines 29569--29572 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [453] Underfull \hbox (badness 7925) in paragraph at lines 29651--29655 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29651--29655 []\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][] \T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29656--29665 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s, [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] Underfull \hbox (badness 2726) in paragraph at lines 30692--30695 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] Underfull \vbox (badness 3803) has occurred while \output is active [489] [490] [491] [492] [493] [494] [495] [496] [497] Underfull \hbox (badness 1533) in paragraph at lines 32526--32529 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [498] [499] [500] Underfull \hbox (badness 1163) in paragraph at lines 32698--32709 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] Underfull \hbox (badness 10000) in paragraph at lines 34382--34386 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 34382--34386 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 34403--34405 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 34406--34410 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [527] [528] Underfull \vbox (badness 10000) has occurred while \output is active [529] [530] [531] [532] [533] [534] [535] [536] Underfull \hbox (badness 1655) in paragraph at lines 35014--35016 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] Underfull \hbox (badness 2261) in paragraph at lines 36229--36234 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] Underfull \hbox (badness 3668) in paragraph at lines 37332--37336 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [573] Underfull \hbox (badness 10000) in paragraph at lines 37423--37434 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \vbox (badness 3803) has occurred while \output is active [594] [595] [596] [597] [598] [599] Underfull \hbox (badness 10000) in paragraph at lines 39086--39088 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [600] [601] [602] [603] [604] [605] Underfull \hbox (badness 2913) in paragraph at lines 39504--39508 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [606] [607] [608] [609] Underfull \hbox (badness 1072) in paragraph at lines 39755--39759 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39760--39764 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39800--39806 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39800--39806 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39800--39806 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [610] Underfull \hbox (badness 3009) in paragraph at lines 39815--39822 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [611] [612] [613] Underfull \hbox (badness 2644) in paragraph at lines 40050--40054 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 4144) in paragraph at lines 41632--41640 []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][ ][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary .data.frame[]\T1/ptm/m/n/10 ). In Underfull \hbox (badness 1158) in paragraph at lines 41642--41644 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [639] [640] [641] [642] [643] [644] [645] ignored error: Infinite glue shrinkage found in box being split [646] [647] [648] [649] Underfull \hbox (badness 1137) in paragraph at lines 42291--42297 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 42309--42314 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [650] [651] Underfull \hbox (badness 1616) in paragraph at lines 42432--42437 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [652] [653] [654] [655] Underfull \vbox (badness 3803) has occurred while \output is active [656] [657] [658] [659] [660] Underfull \hbox (badness 1472) in paragraph at lines 42980--42983 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [661] [662] [663] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 43192. [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 10000) in paragraph at lines 43937--43941 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] Underfull \hbox (badness 10000) in paragraph at lines 45135--45138 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [694] [695] [696] [697] [698] [699] Underfull \vbox (badness 10000) has occurred while \output is active [700] [701] [702] [703] [704] [705] [706] [707] Underfull \hbox (badness 1990) in paragraph at lines 46056--46064 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 46056--46064 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] Underfull \hbox (badness 1014) in paragraph at lines 47504--47507 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [730] [731] Underfull \hbox (badness 2401) in paragraph at lines 47638--47642 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [732] [733] Underfull \hbox (badness 3492) in paragraph at lines 47765--47767 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [734] [735] Underfull \hbox (badness 2111) in paragraph at lines 47851--47856 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 5417) in paragraph at lines 48517--48521 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [746] Underfull \hbox (badness 10000) in paragraph at lines 48578--48582 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [747]) (./compiler-pkg.tex [748] Chapter 2. [749] [750] [751] [752]) (./datasets-pkg.tex Chapter 3. [753] Underfull \hbox (badness 1199) in paragraph at lines 55--59 []\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN [754] [755] [756] [757] ignored error: Infinite glue shrinkage found in box being split [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co l = adjustcolor("thistle", 1/3))[] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [817] [818] [819] [820] Underfull \hbox (badness 10000) in paragraph at lines 4210--4216 []\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been avail-able at [821] [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]) (./grDevices-pkg.tex Chapter 4. [841] [842] [843] [844] [845] Underfull \hbox (badness 2221) in paragraph at lines 284--288 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 299--304 []\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1 0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1 0 in [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] Underfull \hbox (badness 1424) in paragraph at lines 925--927 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [856] Underfull \vbox (badness 3803) has occurred while \output is active [857] [858] [859] [860] Underfull \hbox (badness 5175) in paragraph at lines 1253--1255 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [861] [862] Underfull \hbox (badness 2512) in paragraph at lines 1372--1374 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [863] [864] [865] [866] [867] Underfull \hbox (badness 1490) in paragraph at lines 1672--1677 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1685--1689 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 1325) in paragraph at lines 2100--2110 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [875] Underfull \hbox (badness 10000) in paragraph at lines 2212--2214 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [876] [877] [878] Underfull \hbox (badness 6758) in paragraph at lines 2400--2403 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [879] [880] [881] [882] [883] [884] Underfull \hbox (badness 1694) in paragraph at lines 2759--2762 []\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T 1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to [885] [886] [887] [888] [889] [890] Underfull \hbox (badness 10000) in paragraph at lines 3171--3172 [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] Underfull \vbox (badness 3803) has occurred while \output is active [903] [904] [905] Underfull \hbox (badness 1484) in paragraph at lines 4137--4140 \T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki pedia . org / w / index . php ? title = HCL _ color _ space & [906] Underfull \vbox (badness 10000) has occurred while \output is active [907] [908] [909] [910] Underfull \hbox (badness 1418) in paragraph at lines 4463--4470 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [911] [912] [913] [914] Underfull \hbox (badness 1152) in paragraph at lines 4750--4757 []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 , [915] [916] [917] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4933 \aliasA{symbol}{plotmath}{symbol} ignored error: Infinite glue shrinkage found in box being split [918] ignored error: Infinite glue shrinkage found in box being split [919] [920] [921] Underfull \vbox (badness 3803) has occurred while \output is active [922] [923] Underfull \hbox (badness 1584) in paragraph at lines 5325--5327 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5329--5336 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [924] [925] [926] [927] Underfull \hbox (badness 1377) in paragraph at lines 5631--5636 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [928] [929] Underfull \hbox (badness 1377) in paragraph at lines 5735--5740 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [930] Underfull \hbox (badness 7344) in paragraph at lines 5804--5806 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [931] [932] Underfull \hbox (badness 2035) in paragraph at lines 5944--5953 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5944--5953 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5944--5953 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [933] Underfull \hbox (badness 10000) in paragraph at lines 6010--6015 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [934] [935] [936] Underfull \hbox (badness 1546) in paragraph at lines 6151--6159 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 3343) in paragraph at lines 6595--6598 []\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla y-ing the Graph-ics En- Underfull \hbox (badness 7740) in paragraph at lines 6595--6598 \T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech . wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 / [943] [944] Underfull \hbox (badness 10000) in paragraph at lines 6699--6702 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [945] [946] [947] [948] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] Underfull \hbox (badness 1189) in paragraph at lines 7565--7567 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [959] Underfull \hbox (badness 10000) in paragraph at lines 7670--7672 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [960] [961] [962] [963] [964] [965] [966] [967] [968]) (./graphics-pkg.tex Chapter 5. [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] Underfull \vbox (badness 3803) has occurred while \output is active [980] [981] [982] [983] [984] [985] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [986] Underfull \vbox (badness 10000) has occurred while \output is active [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 4634) in paragraph at lines 1459--1462 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [993] [994] [995] [996] [997] [998] [999] [1000] [1001] Underfull \vbox (badness 3803) has occurred while \output is active [1002] [1003] [1004] [1005] [1006] [1007] [1008] Underfull \hbox (badness 1728) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [1009] [1010] Underfull \hbox (badness 1009) in paragraph at lines 2555--2562 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] Underfull \vbox (badness 10000) has occurred while \output is active [1035] [1036] [1037] [1038] [1039] [1040] Underfull \vbox (badness 3803) has occurred while \output is active [1041] [1042] [1043] [1044] [1045] [1046] [1047] Underfull \hbox (badness 3229) in paragraph at lines 4852--4857 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1048] [1049] [1050] [1051] [1052] Underfull \hbox (badness 1107) in paragraph at lines 5352--5358 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1053] [1054] Underfull \hbox (badness 10000) in paragraph at lines 5481--5484 [1055 ] Underfull \hbox (badness 10000) in paragraph at lines 5542--5544 Underfull \vbox (badness 10000) has occurred while \output is active [1056] [1057 ] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6231 \aliasA{plot}{plot.default}{plot} [1067] Underfull \hbox (badness 10000) in paragraph at lines 6276--6281 []\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1 0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are Underfull \hbox (badness 10000) in paragraph at lines 6276--6281 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its are com-puted from [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168 [][] [1082 ] [1083] Underfull \vbox (badness 10000) has occurred while \output is active [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 4954) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1117] [1118] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9392 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9392 \HeaderA{units}{Graphical Units}{units} [1119] [1120] [1121] [1122]) (./grid-pkg.tex Chapter 6. [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 2680) in paragraph at lines 552--555 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1132] [1133] [1134] [1135] [1136] ignored error: Infinite glue shrinkage found in box being split [1137] [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 4279) in paragraph at lines 1191--1200 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \hbox (badness 10000) in paragraph at lines 3106--3108 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] Underfull \hbox (badness 1067) in paragraph at lines 4845--4848 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1205] [1206] [1207] [1208] [1209] [1210] Underfull \hbox (badness 7256) in paragraph at lines 5196--5198 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1211] [1212] [1213] [1214] [1215] [1216] [1217] Underfull \hbox (badness 2142) in paragraph at lines 5652--5656 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1218] [1219] Underfull \hbox (badness 4699) in paragraph at lines 5734--5739 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251]) (./methods-pkg.tex [1252] Chapter 7. [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] Underfull \vbox (badness 3803) has occurred while \output is active [1261] Underfull \vbox (badness 10000) has occurred while \output is active [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] Underfull \hbox (badness 2237) in paragraph at lines 1393--1395 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 10000) in paragraph at lines 1995--2000 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1995--2000 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1281] [1282] [1283] Underfull \hbox (badness 2213) in paragraph at lines 2227--2232 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1289] [1290] Underfull \hbox (badness 1132) in paragraph at lines 2732--2736 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1291] Underfull \hbox (badness 1033) in paragraph at lines 2768--2773 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \hbox (badness 1102) in paragraph at lines 3331--3333 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1299] [1300] [1301] [1302] [1303] [1304] Underfull \hbox (badness 10000) in paragraph at lines 3668--3677 []\T1/ptm/m/n/10 The [1305] Underfull \hbox (badness 10000) in paragraph at lines 3788--3789 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1306] Underfull \hbox (badness 10000) in paragraph at lines 3872--3873 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] Underfull \hbox (badness 1769) in paragraph at lines 4515--4521 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4515--4521 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1317] [1318] [1319] Underfull \vbox (badness 5681) has occurred while \output is active [1320] [1321] [1322] [1323] Underfull \vbox (badness 1681) has occurred while \output is active [1324] [1325] Underfull \vbox (badness 10000) has occurred while \output is active [1326] Underfull \vbox (badness 10000) has occurred while \output is active [1327] [1328] [1329] Underfull \hbox (badness 4036) in paragraph at lines 5424--5427 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1330] Underfull \hbox (badness 3803) in paragraph at lines 5497--5499 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1331] [1332] [1333] [1334] Underfull \hbox (badness 1087) in paragraph at lines 5731--5736 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] Underfull \hbox (badness 1675) in paragraph at lines 6448--6454 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1343] [1344] [1345] [1346] Underfull \vbox (badness 10000) has occurred while \output is active [1347] [1348] [1349] [1350] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1351] [1352] [1353] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7234 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7236 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7237 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps }) has been already used, duplicate ignored \relax l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7240 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7241 \aliasA{Summary}{S4groupGeneric}{Summary} [1354] Underfull \hbox (badness 2050) in paragraph at lines 7303--7307 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1355] [1356] [1357] Underfull \hbox (badness 1286) in paragraph at lines 7496--7498 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] Underfull \hbox (badness 2197) in paragraph at lines 10545--10548 []\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi 4/m/sl/10 https : / / johnmchambers . su . domains / [1400] Underfull \hbox (badness 1852) in paragraph at lines 10623--10627 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1401] [1402] [1403] [1404]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1405] [1406] [1407] [1408] [1409] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] Underfull \hbox (badness 3386) in paragraph at lines 1423--1426 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1427] [1428] [1429]) (./splines-pkg.tex [1430] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446]) (./stats-pkg.tex Chapter 10. [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] Underfull \hbox (badness 1412) in paragraph at lines 903--905 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] Underfull \hbox (badness 2503) in paragraph at lines 1394--1397 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1469] [1470] [1471] [1472] [1473] [1474] [1475] Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798 [] \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq( rx[1], rx[2], length.out = 25) }[] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] Underfull \hbox (badness 2503) in paragraph at lines 3626--3629 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1504] [1505] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3741. [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] Underfull \hbox (badness 3989) in paragraph at lines 4916--4923 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 2556) in paragraph at lines 5581--5584 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \hbox (badness 2503) in paragraph at lines 5997--6001 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 7081) in paragraph at lines 6802--6805 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6806--6808 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1555] [1556] [1557] [1558] [1559] [1560] Underfull \vbox (badness 10000) has occurred while \output is active [1561] [1562] [1563] Underfull \vbox (badness 10000) has occurred while \output is active [1564] [1565] [1566] [1567] [1568] Underfull \hbox (badness 10000) in paragraph at lines 7704--7707 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/ zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the [1569] [1570] [1571] Underfull \hbox (badness 2635) in paragraph at lines 7848--7851 []\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T 1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view = [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 1960) in paragraph at lines 8597--8600 []\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which case [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] Underfull \hbox (badness 2626) in paragraph at lines 9439--9442 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1597] [1598] Underfull \hbox (badness 2503) in paragraph at lines 9546--9550 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] Underfull \hbox (badness 1253) in paragraph at lines 10301--10306 []\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo r all pa-ram-e-ters: Underfull \hbox (badness 1337) in paragraph at lines 10306--10309 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1610] [1611] [1612] Underfull \vbox (badness 10000) has occurred while \output is active [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 4518) in paragraph at lines 11250--11255 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1625] [1626] [1627] [1628] [1629] Underfull \hbox (badness 2142) in paragraph at lines 11621--11624 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11640--11643 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1630] Underfull \hbox (badness 1708) in paragraph at lines 11702--11706 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1631] [1632] [1633] Underfull \hbox (badness 1005) in paragraph at lines 11924--11928 []\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean dis-tances [1634] [1635] [1636] Underfull \hbox (badness 1694) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12627 \aliasA{hat}{influence.measures}{hat} [1646] [1647] Underfull \hbox (badness 1484) in paragraph at lines 12783--12785 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] Underfull \hbox (badness 10000) in paragraph at lines 13391--13393 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1659] [1660] [1661] [1662] [1663] Underfull \hbox (badness 2894) in paragraph at lines 13735--13739 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 1281) in paragraph at lines 14478--14482 []\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and Re-lated Re-gres-sion Meth- [1676] Underfull \hbox (badness 4518) in paragraph at lines 14567--14572 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] [1686] Underfull \hbox (badness 1596) in paragraph at lines 15205--15208 \T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(, ...)[]\T1/ptm/m/n/10 , he nce, e.g., []\T1/zi4/m/sl/10 cutoff = []\T1/ptm/m/n/10 ; ig-nored for [1687] Underfull \hbox (badness 4518) in paragraph at lines 15263--15268 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1688] [1689] Underfull \hbox (badness 6412) in paragraph at lines 15404--15408 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 15411--15413 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] Underfull \hbox (badness 2503) in paragraph at lines 16503--16507 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1708] [1709] Underfull \vbox (badness 3803) has occurred while \output is active [1710] [1711] [1712] [1713] [1714] [1715] [1716] Underfull \hbox (badness 10000) in paragraph at lines 17024--17030 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 17024--17030 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] Underfull \hbox (badness 1158) in paragraph at lines 18695--18698 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1743] [1744] Underfull \vbox (badness 3803) has occurred while \output is active [1745] Underfull \vbox (badness 10000) has occurred while \output is active [1746] Underfull \vbox (badness 10000) has occurred while \output is active [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] Underfull \hbox (badness 1377) in paragraph at lines 19758--19763 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19763--19766 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19776--19780 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19776--19780 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19784--19788 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1761] [1762] [1763] Underfull \vbox (badness 10000) has occurred while \output is active [1764] Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] Underfull \hbox (badness 1337) in paragraph at lines 20505--20508 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] Underfull \hbox (badness 10000) in paragraph at lines 20985--20991 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1782] [1783] [1784] [1785] [1786] [1787] [1788] Underfull \hbox (badness 1194) in paragraph at lines 21419--21422 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 2503) in paragraph at lines 21801--21804 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1795] Underfull \hbox (badness 3919) in paragraph at lines 21828--21830 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 22168--22171 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 23168--23174 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 1337) in paragraph at lines 24658--24664 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] Underfull \hbox (badness 1436) in paragraph at lines 25147--25150 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, Underfull \hbox (badness 1009) in paragraph at lines 25150--25153 []\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro rs when []\T1/zi4/m/sl/10 j <- [1850] [1851] Underfull \hbox (badness 10000) in paragraph at lines 25316--25317 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1824) in paragraph at lines 26289--26295 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 26289--26295 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 26310--26313 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] Underfull \vbox (badness 10000) has occurred while \output is active [1876] [1877] Underfull \hbox (badness 2165) in paragraph at lines 26894--26899 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1878] [1879] [1880] Underfull \hbox (badness 1867) in paragraph at lines 27102--27104 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 27118--27122 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1881] [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] Underfull \vbox (badness 10000) has occurred while \output is active [1907] Underfull \hbox (badness 3514) in paragraph at lines 28799--28804 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1908] [1909] [1910] [1911] [1912] Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 29069--29075 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1913] Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1914] [1915] [1916] Underfull \hbox (badness 3514) in paragraph at lines 29302--29307 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1917] [1918] Underfull \hbox (badness 3514) in paragraph at lines 29389--29394 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1919] Underfull \hbox (badness 3514) in paragraph at lines 29454--29459 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1920] [1921] Underfull \hbox (badness 3514) in paragraph at lines 29548--29553 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1922] Underfull \hbox (badness 6691) in paragraph at lines 29640--29645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] Underfull \hbox (badness 4024) in paragraph at lines 30135--30138 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] Underfull \hbox (badness 5431) in paragraph at lines 30753--30755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1941] [1942] [1943] [1944] Underfull \hbox (badness 5431) in paragraph at lines 30971--30974 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1337) in paragraph at lines 31286--31290 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1950] [1951] [1952] Underfull \hbox (badness 1127) in paragraph at lines 31428--31431 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1953] [1954] [1955] Underfull \hbox (badness 1616) in paragraph at lines 31646--31649 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1956] [1957] [1958] [1959] [1960] [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \hbox (badness 3557) in paragraph at lines 32900--32904 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1976] [1977] [1978] Underfull \vbox (badness 10000) has occurred while \output is active [1979] [1980] [1981] Underfull \hbox (badness 1337) in paragraph at lines 33268--33272 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] Underfull \hbox (badness 1337) in paragraph at lines 33816--33820 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1991] [1992] [1993] [1994] [1995] [1996] Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1997] [1998] [1999] [2000] [2001]) (./stats4-pkg.tex [2002] Chapter 11. [2003] [2004] [2005] Underfull \vbox (badness 10000) has occurred while \output is active [2006] Underfull \vbox (badness 10000) has occurred while \output is active [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.506 ...Package \pkg{stats4}}{show.Rdash.methods} [2011] [2012] [2013]) (./tcltk-pkg.tex [2014] Chapter 12. [2015] [2016] [2017] [2018] [2019] [2020] [2021] Underfull \vbox (badness 10000) has occurred while \output is active [2022] Underfull \vbox (badness 10000) has occurred while \output is active [2023] Underfull \hbox (badness 1546) in paragraph at lines 687--694 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [2024] [2025] [2026] [2027] [2028] Underfull \vbox (badness 10000) has occurred while \output is active [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036]) (./tools-pkg.tex Chapter 13. [2037] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2038] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2039] [2040] [2041] Underfull \hbox (badness 1308) in paragraph at lines 326--339 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 326--339 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 326--339 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 326--339 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2042] [2043] Underfull \hbox (badness 3039) in paragraph at lines 429--431 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2044] Underfull \hbox (badness 1142) in paragraph at lines 501--505 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2045] [2046] [2047] [2048] [2049] [2050] [2051] ignored error: Infinite glue shrinkage found in box being split [2052] [2053] [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 1014) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1352--1354 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2059] Underfull \hbox (badness 10000) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2060] [2061] [2062] [2063] [2064] [2065] Underfull \hbox (badness 10000) in paragraph at lines 1783--1794 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR AN_check_details() []\T1/ptm/m/n/10 and [2066] [2067] Underfull \hbox (badness 4096) in paragraph at lines 1934--1942 \T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2068] Underfull \hbox (badness 1082) in paragraph at lines 1944--1946 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2069] [2070] [2071] [2072] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] Underfull \hbox (badness 3386) in paragraph at lines 2736--2739 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2081] [2082] [2083] Underfull \hbox (badness 4096) in paragraph at lines 2899--2907 \T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2084] [2085] [2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] Underfull \hbox (badness 1424) in paragraph at lines 3933--3935 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2100] [2101] [2102] Underfull \hbox (badness 4792) in paragraph at lines 4106--4107 []\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 4717--4719 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2113] [2114] [2115] [2116] [2117] [2118] Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping") # "a Small Fox is .." (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha nge)% i.e. BUG[] [2119] [2120] [2121] Underfull \hbox (badness 1796) in paragraph at lines 5256--5261 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = [2122] Underfull \hbox (badness 1838) in paragraph at lines 5342--5348 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 5342--5348 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2123] [2124] [2125] [2126] [2127] [2128] Underfull \hbox (badness 2197) in paragraph at lines 5693--5703 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : [2129] Underfull \hbox (badness 1571) in paragraph at lines 5768--5772 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2130] [2131] [2132] [2133]) (./utils-pkg.tex [2134] Chapter 14. [2135] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 10000) in paragraph at lines 727--733 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 727--733 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2146] [2147] [2148] Underfull \hbox (badness 3861) in paragraph at lines 942--947 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2149] [2150] [2151] Underfull \hbox (badness 10000) in paragraph at lines 1146--1148 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2152] [2153] [2154] Underfull \vbox (badness 3803) has occurred while \output is active [2155] [2156] [2157] [2158] [2159] [2160] [2161] Underfull \hbox (badness 3919) in paragraph at lines 1755--1758 []\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer red from the Underfull \hbox (badness 1371) in paragraph at lines 1765--1767 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] Underfull \hbox (badness 2057) in paragraph at lines 2387--2389 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2172] [2173] Underfull \hbox (badness 2150) in paragraph at lines 2473--2480 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2473--2480 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2174] [2175] [2176] [2177] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2756 ... the Clipboard in MS Windows}{clipboard} [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] Underfull \hbox (badness 6842) in paragraph at lines 4074--4079 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2199] Underfull \hbox (badness 1430) in paragraph at lines 4156--4160 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2200] Underfull \hbox (badness 1184) in paragraph at lines 4232--4248 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4232--4248 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4232--4248 \T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2201] [2202] Underfull \hbox (badness 10000) in paragraph at lines 4382--4384 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5160 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5160 ...mat Unordered and Ordered Lists}{format} [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] Underfull \hbox (badness 1622) in paragraph at lines 5684--5688 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2224] [2225] [2226] [2227] [2228] [2229] Underfull \hbox (badness 1448) in paragraph at lines 6069--6074 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] Underfull \hbox (badness 1371) in paragraph at lines 6629--6631 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2238] [2239] Underfull \hbox (badness 1502) in paragraph at lines 6718--6724 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6718--6724 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2240] [2241] [2242] Underfull \hbox (badness 10000) in paragraph at lines 6904--6913 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6904--6913 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2243] Underfull \hbox (badness 2150) in paragraph at lines 6967--6970 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2244] [2245] Underfull \hbox (badness 3118) in paragraph at lines 7105--7107 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2246] [2247] Underfull \hbox (badness 1325) in paragraph at lines 7283--7287 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2248] [2249] Underfull \hbox (badness 1424) in paragraph at lines 7375--7378 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2250] Underfull \hbox (badness 3219) in paragraph at lines 7457--7464 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7457--7464 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7457--7464 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7457--7464 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no Underfull \hbox (badness 1629) in paragraph at lines 7470--7472 []\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from [][]$\T1/zi4/m/it/10 https : / / CRAN . [2251] Underfull \hbox (badness 1024) in paragraph at lines 7586--7589 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2252] Underfull \hbox (badness 10000) in paragraph at lines 7620--7625 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2253] Underfull \hbox (badness 5133) in paragraph at lines 7685--7689 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] Underfull \hbox (badness 10000) in paragraph at lines 8356--8358 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2265] [2266] [2267] [2268] [2269] [2270] [2271] [2272] ignored error: Infinite glue shrinkage found in box being split [2273] [2274] Underfull \hbox (badness 3690) in paragraph at lines 8992--8995 []\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in g[][][] for the pack-age [2275] [2276] [2277] Underfull \hbox (badness 2310) in paragraph at lines 9145--9150 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2278] [2279] [2280] [2281] [2282] [2283] [2284] [2285] [2286] Underfull \hbox (badness 1248) in paragraph at lines 9725--9729 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2287] [2288] [2289] [2290] [2291] Underfull \hbox (badness 2600) in paragraph at lines 10024--10027 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300] Underfull \hbox (badness 1097) in paragraph at lines 10662--10665 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2301] [2302] Underfull \hbox (badness 3000) in paragraph at lines 10798--10803 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] Underfull \hbox (badness 2134) in paragraph at lines 11395--11400 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2312] Underfull \hbox (badness 10000) in paragraph at lines 11451--11456 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11451--11456 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] Underfull \hbox (badness 6110) in paragraph at lines 11951--11954 \T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki pedia . org / w / index . php ? title = Roman _ numerals & [2321] [2322] [2323] [2324] [2325] [2326] [2327] Underfull \hbox (badness 4060) in paragraph at lines 12394--12397 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2328] [2329] [2330] [2331] Underfull \hbox (badness 2150) in paragraph at lines 12673--12675 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2332] [2333] Underfull \hbox (badness 1742) in paragraph at lines 12754--12762 []\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/ it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/ m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc []\T1/ptm/m/n/10 and [2334] [2335] [2336] Underfull \hbox (badness 10000) in paragraph at lines 12952--12960 []\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/ m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo c[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12973--12977 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 13006--13012 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2337] Underfull \hbox (badness 2762) in paragraph at lines 13021--13027 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). 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The de-fault is the cur-rently ac-t ive [2356] [2357] Underfull \vbox (badness 10000) has occurred while \output is active [2358] [2359] [2360] [2361] [2362] Underfull \hbox (badness 2932) in paragraph at lines 14656--14663 []\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14656--14663 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix.Rdash.class} has been referenced but does not exist, replaced by a 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 150--158 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 150--158 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 150--158 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 150--158 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 150--158 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 338--341 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 573--579 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when \TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 `[] [43] [44] [45] [46] [47] Underfull \hbox (badness 1721) in paragraph at lines 2977--2981 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 2538) in paragraph at lines 3469--3472 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [55] [56] [57] [58] [59] Underfull \vbox (badness 3803) has occurred while \output is active [60] [61] [62] [63] [64] [65] [66] [67] Underfull \hbox (badness 10000) in paragraph at lines 4265--4267 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Underfull \hbox (badness 2521) in paragraph at lines 5623--5625 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [109] [110] [111] [112] [113] [114] [115] [116] [117] Underfull \hbox (badness 2253) in paragraph at lines 7557--7562 []\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn ection[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2846) in paragraph at lines 7557--7562 []\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class [118] [119] [120] [121] Underfull \hbox (badness 2261) in paragraph at lines 7873--7878 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [122] [123] [124] Underfull \vbox (badness 10000) has occurred while \output is active [125] [126] [127] [128] [129] [130] [131] [132] [133] Underfull \hbox (badness 2096) in paragraph at lines 8618--8622 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [134] [135] Underfull \hbox (badness 2351) in paragraph at lines 8734--8737 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [136] [137] [138] [139] [140] Underfull \hbox (badness 4479) in paragraph at lines 9051--9062 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [141] [142] [143] [144] [145] [146] Underfull \hbox (badness 2698) in paragraph at lines 9465--9471 []\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is. finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 1629) in paragraph at lines 9492--9504 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9492--9504 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [147] [148] [149] Underfull \hbox (badness 3657) in paragraph at lines 9692--9694 [][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac -tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 , [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 1178) in paragraph at lines 10351--10355 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 2744) in paragraph at lines 12723--12725 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 2253) in paragraph at lines 14943--14945 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [229] Underfull \hbox (badness 1490) in paragraph at lines 14978--14981 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [230] Underfull \hbox (badness 1565) in paragraph at lines 15064--15068 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [231] Underfull \hbox (badness 4927) in paragraph at lines 15115--15117 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [232] [233] Underfull \hbox (badness 1466) in paragraph at lines 15266--15269 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 15397--15401 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15408--15411 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [236] [237] [238] [239] [240] Underfull \hbox (badness 3965) in paragraph at lines 15712--15716 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [241] [242] [243] [244] [245] [246] [247] [248] Underfull \hbox (badness 5260) in paragraph at lines 16225--16225 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [249] [250] [251] [252] [253] Underfull \hbox (badness 4429) in paragraph at lines 16517--16520 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [254] [255] Underfull \hbox (badness 10000) in paragraph at lines 16624--16626 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [256] Underfull \hbox (badness 2035) in paragraph at lines 16697--16701 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [257] Underfull \vbox (badness 10000) has occurred while \output is active [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 2452) in paragraph at lines 17323--17327 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17323--17327 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [267] [268] [269] Underfull \hbox (badness 1092) in paragraph at lines 17516--17521 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [270] [271] [272] Underfull \hbox (badness 6741) in paragraph at lines 17769--17773 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [273] [274] [275] [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \vbox (badness 10000) has occurred while \output is active [285] [286] [287] [288] [289] [290] [291] [292] [293] [294] [295] Underfull \hbox (badness 1769) in paragraph at lines 19283--19286 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [296] [297] [298] [299] [300] Underfull \hbox (badness 10000) in paragraph at lines 19592--19594 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19598--19607 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [301] [302] [303] [304] [305] [306] [307] [308] [309] Underfull \hbox (badness 1442) in paragraph at lines 20210--20212 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [310] [311] Underfull \hbox (badness 2452) in paragraph at lines 20306--20332 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 20306--20332 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 1248) in paragraph at lines 20704--20707 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [318] [319] [320] [321] [322] Underfull \hbox (badness 4739) in paragraph at lines 20975--20977 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [323] [324] [325] [326] [327] Underfull \vbox (badness 3803) has occurred while \output is active [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] Underfull \hbox (badness 2469) in paragraph at lines 22168--22173 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [342] [343] Underfull \hbox (badness 1675) in paragraph at lines 22255--22264 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 22265--22278 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 22313--22316 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 22313--22316 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [344] [345] Underfull \hbox (badness 1014) in paragraph at lines 22448--22453 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] [358] Underfull \hbox (badness 1264) in paragraph at lines 23309--23317 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [359] Underfull \hbox (badness 4441) in paragraph at lines 23344--23347 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] Underfull \hbox (badness 5231) in paragraph at lines 24169--24171 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] [384] [385] [386] [387] [388] [389] [390] Underfull \hbox (badness 6380) in paragraph at lines 25335--25341 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 25335--25341 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [391] [392] [393] [394] [395] [396] [397] [398] Underfull \hbox (badness 2790) in paragraph at lines 25848--25851 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25848--25851 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [399] [400] [401] [402] [403] Underfull \hbox (badness 1194) in paragraph at lines 26180--26183 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [404] [405] [406] Underfull \hbox (badness 2368) in paragraph at lines 26390--26396 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [407] [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 26783--26786 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 10000) in paragraph at lines 27435--27437 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 2443) in paragraph at lines 27928--27936 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [430] [431] [432] [433] [434] [435] [436] Underfull \hbox (badness 1881) in paragraph at lines 28360--28363 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 28385--28387 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [437] [438] Underfull \hbox (badness 2142) in paragraph at lines 28532--28536 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [439] Underfull \hbox (badness 1968) in paragraph at lines 28589--28594 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [440] [441] [442] Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28897--28903 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28910--28913 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and [443] Underfull \hbox (badness 2689) in paragraph at lines 28936--28938 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28984--28989 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28990--29001 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28990--29001 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 29002--29005 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [444] [445] [446] [447] [448] [449] Underfull \hbox (badness 10000) in paragraph at lines 29420--29424 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [450] [451] [452] Underfull \hbox (badness 10000) in paragraph at lines 29569--29572 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [453] Underfull \hbox (badness 7925) in paragraph at lines 29651--29655 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29651--29655 []\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][] \T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29656--29665 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s, [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] Underfull \hbox (badness 2726) in paragraph at lines 30692--30695 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] Underfull \vbox (badness 3803) has occurred while \output is active [489] [490] [491] [492] [493] [494] [495] [496] [497] Underfull \hbox (badness 1533) in paragraph at lines 32526--32529 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [498] [499] [500] Underfull \hbox (badness 1163) in paragraph at lines 32698--32709 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] Underfull \hbox (badness 10000) in paragraph at lines 34382--34386 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 34382--34386 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 34403--34405 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 34406--34410 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [527] [528] Underfull \vbox (badness 10000) has occurred while \output is active [529] [530] [531] [532] [533] [534] [535] [536] Underfull \hbox (badness 1655) in paragraph at lines 35014--35016 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] Underfull \hbox (badness 2261) in paragraph at lines 36229--36234 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] Underfull \hbox (badness 3668) in paragraph at lines 37332--37336 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [573] Underfull \hbox (badness 10000) in paragraph at lines 37423--37434 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \vbox (badness 3803) has occurred while \output is active [594] [595] [596] [597] [598] [599] Underfull \hbox (badness 10000) in paragraph at lines 39086--39088 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [600] [601] [602] [603] [604] [605] Underfull \hbox (badness 2913) in paragraph at lines 39504--39508 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [606] [607] [608] [609] Underfull \hbox (badness 1072) in paragraph at lines 39755--39759 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39760--39764 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39800--39806 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39800--39806 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39800--39806 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [610] Underfull \hbox (badness 3009) in paragraph at lines 39815--39822 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39815--39822 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [611] [612] [613] Underfull \hbox (badness 2644) in paragraph at lines 40050--40054 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 4144) in paragraph at lines 41632--41640 []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][ ][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary .data.frame[]\T1/ptm/m/n/10 ). In Underfull \hbox (badness 1158) in paragraph at lines 41642--41644 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [639] [640] [641] [642] [643] [644] [645] ignored error: Infinite glue shrinkage found in box being split [646] [647] [648] [649] Underfull \hbox (badness 1137) in paragraph at lines 42291--42297 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 42309--42314 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [650] [651] Underfull \hbox (badness 1616) in paragraph at lines 42432--42437 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [652] [653] [654] [655] Underfull \vbox (badness 3803) has occurred while \output is active [656] [657] [658] [659] [660] Underfull \hbox (badness 1472) in paragraph at lines 42980--42983 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [661] [662] [663] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 43192. [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 10000) in paragraph at lines 43937--43941 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] Underfull \hbox (badness 10000) in paragraph at lines 45135--45138 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [694] [695] [696] [697] [698] [699] Underfull \vbox (badness 10000) has occurred while \output is active [700] [701] [702] [703] [704] [705] [706] [707] Underfull \hbox (badness 1990) in paragraph at lines 46056--46064 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 46056--46064 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] Underfull \hbox (badness 1014) in paragraph at lines 47504--47507 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [730] [731] Underfull \hbox (badness 2401) in paragraph at lines 47638--47642 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [732] [733] Underfull \hbox (badness 3492) in paragraph at lines 47765--47767 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [734] [735] Underfull \hbox (badness 2111) in paragraph at lines 47851--47856 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 5417) in paragraph at lines 48517--48521 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [746] Underfull \hbox (badness 10000) in paragraph at lines 48578--48582 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [747]) (./compiler-pkg.tex [748] Chapter 2. [749] [750] [751] [752]) (./datasets-pkg.tex Chapter 3. [753] Underfull \hbox (badness 1199) in paragraph at lines 55--59 []\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN [754] [755] [756] [757] ignored error: Infinite glue shrinkage found in box being split [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co l = adjustcolor("thistle", 1/3))[] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [817] [818] [819] [820] Underfull \hbox (badness 10000) in paragraph at lines 4210--4216 []\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been avail-able at [821] [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]) (./grDevices-pkg.tex Chapter 4. [841] [842] [843] [844] [845] Underfull \hbox (badness 2221) in paragraph at lines 284--288 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 299--304 []\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1 0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1 0 in [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] Underfull \hbox (badness 1424) in paragraph at lines 925--927 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [856] Underfull \vbox (badness 3803) has occurred while \output is active [857] [858] [859] [860] Underfull \hbox (badness 5175) in paragraph at lines 1253--1255 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [861] [862] Underfull \hbox (badness 2512) in paragraph at lines 1372--1374 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [863] [864] [865] [866] [867] Underfull \hbox (badness 1490) in paragraph at lines 1672--1677 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1685--1689 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 1325) in paragraph at lines 2100--2110 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [875] Underfull \hbox (badness 10000) in paragraph at lines 2212--2214 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [876] [877] [878] Underfull \hbox (badness 6758) in paragraph at lines 2400--2403 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [879] [880] [881] [882] [883] [884] Underfull \hbox (badness 1694) in paragraph at lines 2759--2762 []\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T 1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to [885] [886] [887] [888] [889] [890] Underfull \hbox (badness 10000) in paragraph at lines 3171--3172 [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] Underfull \vbox (badness 3803) has occurred while \output is active [903] [904] [905] Underfull \hbox (badness 1484) in paragraph at lines 4137--4140 \T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki pedia . org / w / index . php ? title = HCL _ color _ space & [906] Underfull \vbox (badness 10000) has occurred while \output is active [907] [908] [909] [910] Underfull \hbox (badness 1418) in paragraph at lines 4463--4470 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [911] [912] [913] [914] Underfull \hbox (badness 1152) in paragraph at lines 4750--4757 []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 , [915] [916] [917] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4933 \aliasA{symbol}{plotmath}{symbol} ignored error: Infinite glue shrinkage found in box being split [918] ignored error: Infinite glue shrinkage found in box being split [919] [920] [921] Underfull \vbox (badness 3803) has occurred while \output is active [922] [923] Underfull \hbox (badness 1584) in paragraph at lines 5325--5327 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5329--5336 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [924] [925] [926] [927] Underfull \hbox (badness 1377) in paragraph at lines 5631--5636 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [928] [929] Underfull \hbox (badness 1377) in paragraph at lines 5735--5740 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [930] Underfull \hbox (badness 7344) in paragraph at lines 5804--5806 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [931] [932] Underfull \hbox (badness 2035) in paragraph at lines 5944--5953 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5944--5953 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5944--5953 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [933] Underfull \hbox (badness 10000) in paragraph at lines 6010--6015 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [934] [935] [936] Underfull \hbox (badness 1546) in paragraph at lines 6151--6159 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 3343) in paragraph at lines 6595--6598 []\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla y-ing the Graph-ics En- Underfull \hbox (badness 7740) in paragraph at lines 6595--6598 \T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech . wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 / [943] [944] Underfull \hbox (badness 10000) in paragraph at lines 6699--6702 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [945] [946] [947] [948] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] Underfull \hbox (badness 1189) in paragraph at lines 7565--7567 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [959] Underfull \hbox (badness 10000) in paragraph at lines 7670--7672 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [960] [961] [962] [963] [964] [965] [966] [967] [968]) (./graphics-pkg.tex Chapter 5. [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] Underfull \vbox (badness 3803) has occurred while \output is active [980] [981] [982] [983] [984] [985] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [986] Underfull \vbox (badness 10000) has occurred while \output is active [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 4634) in paragraph at lines 1459--1462 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [993] [994] [995] [996] [997] [998] [999] [1000] [1001] Underfull \vbox (badness 3803) has occurred while \output is active [1002] [1003] [1004] [1005] [1006] [1007] [1008] Underfull \hbox (badness 1728) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [1009] [1010] Underfull \hbox (badness 1009) in paragraph at lines 2555--2562 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] Underfull \vbox (badness 10000) has occurred while \output is active [1035] [1036] [1037] [1038] [1039] [1040] Underfull \vbox (badness 3803) has occurred while \output is active [1041] [1042] [1043] [1044] [1045] [1046] [1047] Underfull \hbox (badness 3229) in paragraph at lines 4852--4857 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1048] [1049] [1050] [1051] [1052] Underfull \hbox (badness 1107) in paragraph at lines 5352--5358 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1053] [1054] Underfull \hbox (badness 10000) in paragraph at lines 5481--5484 [1055 ] Underfull \hbox (badness 10000) in paragraph at lines 5542--5544 Underfull \vbox (badness 10000) has occurred while \output is active [1056] [1057 ] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6231 \aliasA{plot}{plot.default}{plot} [1067] Underfull \hbox (badness 10000) in paragraph at lines 6276--6281 []\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1 0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are Underfull \hbox (badness 10000) in paragraph at lines 6276--6281 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its are com-puted from [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168 [][] [1082 ] [1083] Underfull \vbox (badness 10000) has occurred while \output is active [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 4954) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1117] [1118] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9392 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9392 \HeaderA{units}{Graphical Units}{units} [1119] [1120] [1121] [1122]) (./grid-pkg.tex Chapter 6. [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 2680) in paragraph at lines 552--555 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1132] [1133] [1134] [1135] [1136] ignored error: Infinite glue shrinkage found in box being split [1137] [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 4279) in paragraph at lines 1191--1200 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \hbox (badness 10000) in paragraph at lines 3106--3108 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] Underfull \hbox (badness 1067) in paragraph at lines 4845--4848 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1205] [1206] [1207] [1208] [1209] [1210] Underfull \hbox (badness 7256) in paragraph at lines 5196--5198 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1211] [1212] [1213] [1214] [1215] [1216] [1217] Underfull \hbox (badness 2142) in paragraph at lines 5652--5656 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1218] [1219] Underfull \hbox (badness 4699) in paragraph at lines 5734--5739 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251]) (./methods-pkg.tex [1252] Chapter 7. [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] Underfull \vbox (badness 3803) has occurred while \output is active [1261] Underfull \vbox (badness 10000) has occurred while \output is active [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] Underfull \hbox (badness 2237) in paragraph at lines 1393--1395 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 10000) in paragraph at lines 1995--2000 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1995--2000 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1281] [1282] [1283] Underfull \hbox (badness 2213) in paragraph at lines 2227--2232 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1289] [1290] Underfull \hbox (badness 1132) in paragraph at lines 2732--2736 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1291] Underfull \hbox (badness 1033) in paragraph at lines 2768--2773 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \hbox (badness 1102) in paragraph at lines 3331--3333 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1299] [1300] [1301] [1302] [1303] [1304] Underfull \hbox (badness 10000) in paragraph at lines 3668--3677 []\T1/ptm/m/n/10 The [1305] Underfull \hbox (badness 10000) in paragraph at lines 3788--3789 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1306] Underfull \hbox (badness 10000) in paragraph at lines 3872--3873 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] Underfull \hbox (badness 1769) in paragraph at lines 4515--4521 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4515--4521 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1317] [1318] [1319] Underfull \vbox (badness 5681) has occurred while \output is active [1320] [1321] [1322] [1323] Underfull \vbox (badness 1681) has occurred while \output is active [1324] [1325] Underfull \vbox (badness 10000) has occurred while \output is active [1326] Underfull \vbox (badness 10000) has occurred while \output is active [1327] [1328] [1329] Underfull \hbox (badness 4036) in paragraph at lines 5424--5427 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1330] Underfull \hbox (badness 3803) in paragraph at lines 5497--5499 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1331] [1332] [1333] [1334] Underfull \hbox (badness 1087) in paragraph at lines 5731--5736 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] Underfull \hbox (badness 1675) in paragraph at lines 6448--6454 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1343] [1344] [1345] [1346] Underfull \vbox (badness 10000) has occurred while \output is active [1347] [1348] [1349] [1350] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1351] [1352] [1353] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7234 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7236 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7237 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps }) has been already used, duplicate ignored \relax l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7240 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7241 \aliasA{Summary}{S4groupGeneric}{Summary} [1354] Underfull \hbox (badness 2050) in paragraph at lines 7303--7307 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1355] [1356] [1357] Underfull \hbox (badness 1286) in paragraph at lines 7496--7498 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] Underfull \hbox (badness 2197) in paragraph at lines 10545--10548 []\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi 4/m/sl/10 https : / / johnmchambers . su . domains / [1400] Underfull \hbox (badness 1852) in paragraph at lines 10623--10627 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1401] [1402] [1403] [1404]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1405] [1406] [1407] [1408] [1409] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] Underfull \hbox (badness 3386) in paragraph at lines 1423--1426 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1427] [1428] [1429]) (./splines-pkg.tex [1430] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446]) (./stats-pkg.tex Chapter 10. [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] Underfull \hbox (badness 1412) in paragraph at lines 903--905 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] Underfull \hbox (badness 2503) in paragraph at lines 1394--1397 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1469] [1470] [1471] [1472] [1473] [1474] [1475] Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798 [] \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq( rx[1], rx[2], length.out = 25) }[] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] Underfull \hbox (badness 2503) in paragraph at lines 3626--3629 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1504] [1505] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3741. [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] Underfull \hbox (badness 3989) in paragraph at lines 4916--4923 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 2556) in paragraph at lines 5581--5584 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \hbox (badness 2503) in paragraph at lines 5997--6001 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 7081) in paragraph at lines 6802--6805 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6806--6808 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1555] [1556] [1557] [1558] [1559] [1560] Underfull \vbox (badness 10000) has occurred while \output is active [1561] [1562] [1563] Underfull \vbox (badness 10000) has occurred while \output is active [1564] [1565] [1566] [1567] [1568] Underfull \hbox (badness 10000) in paragraph at lines 7704--7707 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/ zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the [1569] [1570] [1571] Underfull \hbox (badness 2635) in paragraph at lines 7848--7851 []\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T 1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view = [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 1960) in paragraph at lines 8597--8600 []\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which case [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] Underfull \hbox (badness 2626) in paragraph at lines 9439--9442 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1597] [1598] Underfull \hbox (badness 2503) in paragraph at lines 9546--9550 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] Underfull \hbox (badness 1253) in paragraph at lines 10301--10306 []\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo r all pa-ram-e-ters: Underfull \hbox (badness 1337) in paragraph at lines 10306--10309 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1610] [1611] [1612] Underfull \vbox (badness 10000) has occurred while \output is active [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 4518) in paragraph at lines 11250--11255 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1625] [1626] [1627] [1628] [1629] Underfull \hbox (badness 2142) in paragraph at lines 11621--11624 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11640--11643 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1630] Underfull \hbox (badness 1708) in paragraph at lines 11702--11706 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1631] [1632] [1633] Underfull \hbox (badness 1005) in paragraph at lines 11924--11928 []\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean dis-tances [1634] [1635] [1636] Underfull \hbox (badness 1694) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12627 \aliasA{hat}{influence.measures}{hat} [1646] [1647] Underfull \hbox (badness 1484) in paragraph at lines 12783--12785 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] Underfull \hbox (badness 10000) in paragraph at lines 13391--13393 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1659] [1660] [1661] [1662] [1663] Underfull \hbox (badness 2894) in paragraph at lines 13735--13739 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 1281) in paragraph at lines 14478--14482 []\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and Re-lated Re-gres-sion Meth- [1676] Underfull \hbox (badness 4518) in paragraph at lines 14567--14572 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] [1686] Underfull \hbox (badness 1596) in paragraph at lines 15205--15208 \T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(, ...)[]\T1/ptm/m/n/10 , he nce, e.g., []\T1/zi4/m/sl/10 cutoff = []\T1/ptm/m/n/10 ; ig-nored for [1687] Underfull \hbox (badness 4518) in paragraph at lines 15263--15268 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1688] [1689] Underfull \hbox (badness 6412) in paragraph at lines 15404--15408 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 15411--15413 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] Underfull \hbox (badness 2503) in paragraph at lines 16503--16507 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1708] [1709] Underfull \vbox (badness 3803) has occurred while \output is active [1710] [1711] [1712] [1713] [1714] [1715] [1716] Underfull \hbox (badness 10000) in paragraph at lines 17024--17030 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 17024--17030 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] Underfull \hbox (badness 1158) in paragraph at lines 18695--18698 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1743] [1744] Underfull \vbox (badness 3803) has occurred while \output is active [1745] Underfull \vbox (badness 10000) has occurred while \output is active [1746] Underfull \vbox (badness 10000) has occurred while \output is active [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] Underfull \hbox (badness 1377) in paragraph at lines 19758--19763 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19763--19766 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19776--19780 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19776--19780 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19784--19788 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1761] [1762] [1763] Underfull \vbox (badness 10000) has occurred while \output is active [1764] Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] Underfull \hbox (badness 1337) in paragraph at lines 20505--20508 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] Underfull \hbox (badness 10000) in paragraph at lines 20985--20991 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1782] [1783] [1784] [1785] [1786] [1787] [1788] Underfull \hbox (badness 1194) in paragraph at lines 21419--21422 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 2503) in paragraph at lines 21801--21804 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1795] Underfull \hbox (badness 3919) in paragraph at lines 21828--21830 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 22168--22171 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 23168--23174 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 1337) in paragraph at lines 24658--24664 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] Underfull \hbox (badness 1436) in paragraph at lines 25147--25150 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, Underfull \hbox (badness 1009) in paragraph at lines 25150--25153 []\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro rs when []\T1/zi4/m/sl/10 j <- [1850] [1851] Underfull \hbox (badness 10000) in paragraph at lines 25316--25317 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1824) in paragraph at lines 26289--26295 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 26289--26295 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 26310--26313 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] Underfull \vbox (badness 10000) has occurred while \output is active [1876] [1877] Underfull \hbox (badness 2165) in paragraph at lines 26894--26899 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1878] [1879] [1880] Underfull \hbox (badness 1867) in paragraph at lines 27102--27104 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 27118--27122 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1881] [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] Underfull \vbox (badness 10000) has occurred while \output is active [1907] Underfull \hbox (badness 3514) in paragraph at lines 28799--28804 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1908] [1909] [1910] [1911] [1912] Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 29069--29075 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1913] Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1914] [1915] [1916] Underfull \hbox (badness 3514) in paragraph at lines 29302--29307 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1917] [1918] Underfull \hbox (badness 3514) in paragraph at lines 29389--29394 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1919] Underfull \hbox (badness 3514) in paragraph at lines 29454--29459 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1920] [1921] Underfull \hbox (badness 3514) in paragraph at lines 29548--29553 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1922] Underfull \hbox (badness 6691) in paragraph at lines 29640--29645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] Underfull \hbox (badness 4024) in paragraph at lines 30135--30138 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] Underfull \hbox (badness 5431) in paragraph at lines 30753--30755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1941] [1942] [1943] [1944] Underfull \hbox (badness 5431) in paragraph at lines 30971--30974 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1337) in paragraph at lines 31286--31290 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1950] [1951] [1952] Underfull \hbox (badness 1127) in paragraph at lines 31428--31431 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1953] [1954] [1955] Underfull \hbox (badness 1616) in paragraph at lines 31646--31649 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1956] [1957] [1958] [1959] [1960] [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \hbox (badness 3557) in paragraph at lines 32900--32904 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1976] [1977] [1978] Underfull \vbox (badness 10000) has occurred while \output is active [1979] [1980] [1981] Underfull \hbox (badness 1337) in paragraph at lines 33268--33272 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] Underfull \hbox (badness 1337) in paragraph at lines 33816--33820 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1991] [1992] [1993] [1994] [1995] [1996] Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1997] [1998] [1999] [2000] [2001]) (./stats4-pkg.tex [2002] Chapter 11. [2003] [2004] [2005] Underfull \vbox (badness 10000) has occurred while \output is active [2006] Underfull \vbox (badness 10000) has occurred while \output is active [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.506 ...Package \pkg{stats4}}{show.Rdash.methods} [2011] [2012] [2013]) (./tcltk-pkg.tex [2014] Chapter 12. [2015] [2016] [2017] [2018] [2019] [2020] [2021] Underfull \vbox (badness 10000) has occurred while \output is active [2022] Underfull \vbox (badness 10000) has occurred while \output is active [2023] Underfull \hbox (badness 1546) in paragraph at lines 687--694 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [2024] [2025] [2026] [2027] [2028] Underfull \vbox (badness 10000) has occurred while \output is active [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036]) (./tools-pkg.tex Chapter 13. [2037] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2038] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2039] [2040] [2041] Underfull \hbox (badness 1308) in paragraph at lines 326--339 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 326--339 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 326--339 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 326--339 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2042] [2043] Underfull \hbox (badness 3039) in paragraph at lines 429--431 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2044] Underfull \hbox (badness 1142) in paragraph at lines 501--505 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2045] [2046] [2047] [2048] [2049] [2050] [2051] ignored error: Infinite glue shrinkage found in box being split [2052] [2053] [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 1014) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1352--1354 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2059] Underfull \hbox (badness 10000) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2060] [2061] [2062] [2063] [2064] [2065] Underfull \hbox (badness 10000) in paragraph at lines 1783--1794 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR AN_check_details() []\T1/ptm/m/n/10 and [2066] [2067] Underfull \hbox (badness 4096) in paragraph at lines 1934--1942 \T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2068] Underfull \hbox (badness 1082) in paragraph at lines 1944--1946 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2069] [2070] [2071] [2072] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] Underfull \hbox (badness 3386) in paragraph at lines 2736--2739 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2081] [2082] [2083] Underfull \hbox (badness 4096) in paragraph at lines 2899--2907 \T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2084] [2085] [2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] Underfull \hbox (badness 1424) in paragraph at lines 3933--3935 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2100] [2101] [2102] Underfull \hbox (badness 4792) in paragraph at lines 4106--4107 []\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 4717--4719 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2113] [2114] [2115] [2116] [2117] [2118] Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping") # "a Small Fox is .." (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha nge)% i.e. BUG[] [2119] [2120] [2121] Underfull \hbox (badness 1796) in paragraph at lines 5256--5261 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = [2122] Underfull \hbox (badness 1838) in paragraph at lines 5342--5348 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 5342--5348 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2123] [2124] [2125] [2126] [2127] [2128] Underfull \hbox (badness 2197) in paragraph at lines 5693--5703 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : [2129] Underfull \hbox (badness 1571) in paragraph at lines 5768--5772 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2130] [2131] [2132] [2133]) (./utils-pkg.tex [2134] Chapter 14. [2135] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 10000) in paragraph at lines 727--733 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 727--733 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2146] [2147] [2148] Underfull \hbox (badness 3861) in paragraph at lines 942--947 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2149] [2150] [2151] Underfull \hbox (badness 10000) in paragraph at lines 1146--1148 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2152] [2153] [2154] Underfull \vbox (badness 3803) has occurred while \output is active [2155] [2156] [2157] [2158] [2159] [2160] [2161] Underfull \hbox (badness 3919) in paragraph at lines 1755--1758 []\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer red from the Underfull \hbox (badness 1371) in paragraph at lines 1765--1767 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] Underfull \hbox (badness 2057) in paragraph at lines 2387--2389 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2172] [2173] Underfull \hbox (badness 2150) in paragraph at lines 2473--2480 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2473--2480 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2174] [2175] [2176] [2177] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2756 ... the Clipboard in MS Windows}{clipboard} [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] Underfull \hbox (badness 6842) in paragraph at lines 4074--4079 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2199] Underfull \hbox (badness 1430) in paragraph at lines 4156--4160 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2200] Underfull \hbox (badness 1184) in paragraph at lines 4232--4248 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4232--4248 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4232--4248 \T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2201] [2202] Underfull \hbox (badness 10000) in paragraph at lines 4382--4384 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5160 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5160 ...mat Unordered and Ordered Lists}{format} [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] Underfull \hbox (badness 1622) in paragraph at lines 5684--5688 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2224] [2225] [2226] [2227] [2228] [2229] Underfull \hbox (badness 1448) in paragraph at lines 6069--6074 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] Underfull \hbox (badness 1371) in paragraph at lines 6629--6631 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2238] [2239] Underfull \hbox (badness 1502) in paragraph at lines 6718--6724 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6718--6724 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2240] [2241] [2242] Underfull \hbox (badness 10000) in paragraph at lines 6904--6913 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6904--6913 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2243] Underfull \hbox (badness 2150) in paragraph at lines 6967--6970 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2244] [2245] Underfull \hbox (badness 3118) in paragraph at lines 7105--7107 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2246] [2247] Underfull \hbox (badness 1325) in paragraph at lines 7283--7287 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2248] [2249] Underfull \hbox (badness 1424) in paragraph at lines 7375--7378 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2250] Underfull \hbox (badness 3219) in paragraph at lines 7457--7464 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7457--7464 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7457--7464 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7457--7464 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no Underfull \hbox (badness 1629) in paragraph at lines 7470--7472 []\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from [][]$\T1/zi4/m/it/10 https : / / CRAN . [2251] Underfull \hbox (badness 1024) in paragraph at lines 7586--7589 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2252] Underfull \hbox (badness 10000) in paragraph at lines 7620--7625 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2253] Underfull \hbox (badness 5133) in paragraph at lines 7685--7689 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] Underfull \hbox (badness 10000) in paragraph at lines 8356--8358 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2265] [2266] [2267] [2268] [2269] [2270] [2271] [2272] ignored error: Infinite glue shrinkage found in box being split [2273] [2274] Underfull \hbox (badness 3690) in paragraph at lines 8992--8995 []\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in g[][][] for the pack-age [2275] [2276] [2277] Underfull \hbox (badness 2310) in paragraph at lines 9145--9150 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2278] [2279] [2280] [2281] [2282] [2283] [2284] [2285] [2286] Underfull \hbox (badness 1248) in paragraph at lines 9725--9729 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2287] [2288] [2289] [2290] [2291] Underfull \hbox (badness 2600) in paragraph at lines 10024--10027 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300] Underfull \hbox (badness 1097) in paragraph at lines 10662--10665 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2301] [2302] Underfull \hbox (badness 3000) in paragraph at lines 10798--10803 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] Underfull \hbox (badness 2134) in paragraph at lines 11395--11400 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2312] Underfull \hbox (badness 10000) in paragraph at lines 11451--11456 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11451--11456 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] Underfull \hbox (badness 6110) in paragraph at lines 11951--11954 \T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki pedia . org / w / index . php ? title = Roman _ numerals & [2321] [2322] [2323] [2324] [2325] [2326] [2327] Underfull \hbox (badness 4060) in paragraph at lines 12394--12397 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2328] [2329] [2330] [2331] Underfull \hbox (badness 2150) in paragraph at lines 12673--12675 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2332] [2333] Underfull \hbox (badness 1742) in paragraph at lines 12754--12762 []\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/ it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/ m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc []\T1/ptm/m/n/10 and [2334] [2335] [2336] Underfull \hbox (badness 10000) in paragraph at lines 12952--12960 []\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/ m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo c[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12973--12977 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 13006--13012 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2337] Underfull \hbox (badness 2762) in paragraph at lines 13021--13027 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). 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package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [2456] [2457] [2458] [2459] [2460] [2461] Overfull \hbox (20.8567pt too wide) in paragraph at lines 11609--11611 []\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] [2470] Overfull \hbox (5.8567pt too wide) in paragraph at lines 13493--13495 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 13495--13497 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 13497--13499 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479] [2480]) (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information) pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not exist, replaced 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Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-FAQ.texi This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) [1{/var/lib/texmf/fonts/map/pdftex/u pdmap/pdftex.map}] [-1] Chapter 1 Chapter 2 [1] Cross reference values unknown; you must run TeX again. [2] Underfull \hbox (badness 10000) in paragraph at lines 256--285 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 613--618 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1479--1482 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1754--1754 []@smalltt KernSmooth Functions for Kernel Smoothing Supporting Wand & Jone s (1995)[] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1755--1755 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3037--3051 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] (Acknowledgments) [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (49 pages, 342364 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) [1{/var/lib/texmf/fonts/map/pdftex/u pdmap/pdftex.map}] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-FAQ.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-FAQ.toc ) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-FAQ.toc) Chapter 1 (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-FAQ.aux) Chapter 2 [1] [2] Underfull \hbox (badness 10000) in paragraph at lines 256--285 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 613--618 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1479--1482 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1754--1754 []@smalltt KernSmooth Functions for Kernel Smoothing Supporting Wand & Jone s (1995)[] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1755--1755 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3037--3051 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] (Acknowledgments) [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 362108 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-admin.texi This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1049--1049 [] @texttt c++2b gnu++2b (from 2022.2) c++23 gnu++23 (at least from 20 24.0)[] [13] [14] [15] Chapter 3 [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1865--1865 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2089--2097 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] Overfull \hbox (37.93651pt too wide) in paragraph at lines 2162--2162 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [27] [28] [29] [30] [31] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2614--2614 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [32] Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A [40] [41] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3192--3192 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3415--3417 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [45] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3513--3513 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [46] [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 4154--4157 []@textrm There is also `Re-cur-sive-LA-PACK' ([][]@texttt https:// github. c om/ HPAC/ ReLAPACK? [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4883--4883 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5077--5077 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (122.85329pt too wide) in paragraph at lines 5164--5164 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/pcre2-10.44-da rwin.23-arm64.tar.xz[] Overfull \hbox (105.60722pt too wide) in paragraph at lines 5166--5166 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/xz-5.6.3-darwi n.23-arm64.tar.xz[] [68] Overfull \hbox (60.93126pt too wide) in paragraph at lines 5294--5294 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20 -arm64.tar.gz[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5301--5301 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15. 6.tar.gz[] [69] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5340--5341 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [70] [71] [72] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5608--5608 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5645 @texttt OpenMathLib/ OpenBLAS/ releases[][]@textrm ) by sym-link-ing @texttt /opt/OpenBLAS/lib/libopenblas.dylib[] [73] Underfull \hbox (badness 10000) in paragraph at lines 5720--5731 @texttt zulu-community/ ? os=macos& architecture=arm-64-bit& package=jdk[][ ] @textrm and from [74] [75] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5879--5879 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libgfortran.5. dylib \[] [76] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5884--5884 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5902--5902 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 5925--5925 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [77] [78] (Function and variable index) [79] No file R-admin.vrs. (Environment variable index) [80] No file R-admin.ens. (Concept index) [81] No file R-admin.cps. [82] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (85 pages, 450021 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.toc) Chapter 1 (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1049--1049 [] @texttt c++2b gnu++2b (from 2022.2) c++23 gnu++23 (at least from 20 24.0)[] [13] [14] [15] Chapter 3 [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1865--1865 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2089--2097 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] Overfull \hbox (37.93651pt too wide) in paragraph at lines 2162--2162 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [27] [28] [29] [30] [31] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2614--2614 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [32] Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A [40] [41] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3192--3192 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3415--3417 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [45] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3513--3513 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [46] [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 4154--4157 []@textrm There is also `Re-cur-sive-LA-PACK' ([][]@texttt https:// github. c om/ HPAC/ ReLAPACK? [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4883--4883 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5077--5077 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (122.85329pt too wide) in paragraph at lines 5164--5164 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/pcre2-10.44-da rwin.23-arm64.tar.xz[] Overfull \hbox (105.60722pt too wide) in paragraph at lines 5166--5166 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/xz-5.6.3-darwi n.23-arm64.tar.xz[] l.5220: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [68] Overfull \hbox (60.93126pt too wide) in paragraph at lines 5294--5294 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20 -arm64.tar.gz[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5301--5301 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15. 6.tar.gz[] [69] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5340--5341 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [70] [71] [72] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5608--5608 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5645 @texttt OpenMathLib/ OpenBLAS/ releases[][]@textrm ) by sym-link-ing @texttt /opt/OpenBLAS/lib/libopenblas.dylib[] [73] Underfull \hbox (badness 10000) in paragraph at lines 5720--5731 @texttt zulu-community/ ? os=macos& architecture=arm-64-bit& package=jdk[][ ] @textrm and from [74] [75] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5879--5879 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libgfortran.5. dylib \[] [76] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5884--5884 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5902--5902 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 5925--5925 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [77] [78] (Function and variable index) [79] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.vrs) (Environment variable index) [80] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.ens) (Concept index) [81] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.cps) [82] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (87 pages, 495358 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.toc) Chapter 1 (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1049--1049 [] @texttt c++2b gnu++2b (from 2022.2) c++23 gnu++23 (at least from 20 24.0)[] [13] [14] [15] Chapter 3 [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1865--1865 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2089--2097 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] Overfull \hbox (37.93651pt too wide) in paragraph at lines 2162--2162 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [27] [28] [29] [30] [31] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2614--2614 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [32] Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A [40] [41] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3192--3192 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3415--3417 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [45] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3513--3513 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [46] [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 4154--4157 []@textrm There is also `Re-cur-sive-LA-PACK' ([][]@texttt https:// github. c om/ HPAC/ ReLAPACK? [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4883--4883 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5077--5077 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (122.85329pt too wide) in paragraph at lines 5164--5164 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/pcre2-10.44-da rwin.23-arm64.tar.xz[] Overfull \hbox (105.60722pt too wide) in paragraph at lines 5166--5166 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/xz-5.6.3-darwi n.23-arm64.tar.xz[] l.5220: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [68] Overfull \hbox (60.93126pt too wide) in paragraph at lines 5294--5294 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20 -arm64.tar.gz[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5301--5301 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15. 6.tar.gz[] [69] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5340--5341 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [70] [71] [72] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5608--5608 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5645 @texttt OpenMathLib/ OpenBLAS/ releases[][]@textrm ) by sym-link-ing @texttt /opt/OpenBLAS/lib/libopenblas.dylib[] [73] Underfull \hbox (badness 10000) in paragraph at lines 5720--5731 @texttt zulu-community/ ? os=macos& architecture=arm-64-bit& package=jdk[][ ] @textrm and from [74] [75] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5879--5879 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libgfortran.5. dylib \[] [76] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5884--5884 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5902--5902 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 5925--5925 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [77] [78] (Function and variable index) [79] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.vrs) (Environment variable index) [80] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.ens) (Concept index) [81] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-admin.cps) [82] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (87 pages, 496107 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-data.texi This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) [1] Chapter 1 [2] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1200--1212 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1200--1212 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1758--1764 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] (References) [32] (Function and variable index) [33] No file R-data.vrs. (Concept index) [34] No file R-data.cps. [35] ) (see the transcript file for additional information) Output written on R-data.pdf (38 pages, 259954 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.toc [-1]) [-2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.toc) (Acknowledgements) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.aux) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1200--1212 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1200--1212 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1758--1764 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] (References) [32] (Function and variable index) [33] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.vrs [34]) (Concept index) [35] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 297131 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.toc [-1]) [-2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.toc) (Acknowledgements) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.aux) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1200--1212 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1200--1212 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1758--1764 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] (References) [32] (Function and variable index) [33] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.vrs [34]) (Concept index) [35] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 298795 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-exts.texi This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 513--516 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1327--1328 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1328--1329 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1331--1333 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1333--1335 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1341--1342 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1342--1343 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1345--1347 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1347--1349 @texttt ~/.R/Makevars.win64[]@textrm , [17] [18] [19] [20] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1613--1613 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1614--1614 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1615--1615 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [21] Underfull \hbox (badness 10000) in paragraph at lines 1647--1654 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2058--2058 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2282--2282 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2689--2689 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2691--2691 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [35] [36] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2830--2830 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [37] [38] [39] Underfull \hbox (badness 7221) in paragraph at lines 3036--3039 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [40] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3100--3100 [] @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX 20PICFLAGS)")[] [41] [42] [43] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3355--3355 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4733--4733 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [62] [63] [64] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4964--4964 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4983--4983 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [65] [66] [67] [68] [69] [70] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5444--5444 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2 3 24 25[] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5460--5460 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5462--5462 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5463--5463 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] [71] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5478--5478 []@texttt java.lang.UnsupportedClassVersionError: ... 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String : String P)[] [91] [92] [93] Chapter 2 [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] Underfull \hbox (badness 7451) in paragraph at lines 8143--8157 @texttt \code{"\link[=abc-class]{abc}"}[] @textrm and @texttt \code{\link[=xyz- methods]{xyz}}[] @textrm could [107] [108] Underfull \hbox (badness 10000) in paragraph at lines 8265--8272 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 8481--8486 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. 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[129] [130] [131] [132] Underfull \hbox (badness 10000) in paragraph at lines 10042--10047 @smalltt developer. apple. com/ documentation/ xcode/ diagnosing-memory-th read-and-crash-issues-early[][]@smallrm . Underfull \hbox (badness 10000) in paragraph at lines 10040--10053 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 10057--10058 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [133] [134] Overfull \hbox (78.17732pt too wide) in paragraph at lines 10208--10208 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (32.81921pt too wide) in paragraph at lines 10234--10237 [][]@smalltt https:// developer. apple. com/ documentation/ xcode/ diagno sing-memory-thread-and-crash-issues-early[][]@smallrm .| Overfull \hbox (33.15736pt too wide) in paragraph at lines 10247--10250 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 10346--10350 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 10362--10362 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 10363--10363 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 10366--10366 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10374--10374 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10413--10417 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. [137] Overfull \hbox (72.42863pt too wide) in paragraph at lines 10436--10436 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10481--10481 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10484--10484 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [138] [139] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10563--10563 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [140] [141] [142] Underfull \hbox (badness 10000) in paragraph at lines 10798--10800 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [143] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10854--10854 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10873--10873 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10884--10884 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10904--10904 [] @tex ttt 1[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10913--10913 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10914--10914 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] [144] Chapter 5 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11716--11716 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11780--11780 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [156] [157] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11946--11946 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [158] [159] [160] [161] [162] [163] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12386--12386 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13316--13316 [] @texttt Rf_error("value is not a numeric vector with at least one el ement");[] [175] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13391--13391 [] @texttt if(ign == NA_LOGICAL) Rf_error(" ignore_quotes must be TRUE or FALSE");[] [176] Underfull \hbox (badness 10000) in paragraph at lines 13452--13457 []@textrm Some use-ful pre-allocated val-ues are avail-able as @texttt R_BlankS calarString[]@textrm , [177] Underfull \hbox (badness 7576) in paragraph at lines 13631--13639 []@textrm Some con-ve-nience func-tions for work-ing with pairlist ob-jects in- clude @texttt Rf_ [178] [179] [180] [181] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13994--13994 [] @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T AG(args)));[] [182] [183] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14166--14166 [] @texttt if(!Rf_isEnvironment(rho)) Rf_error(" rho should be an environment");[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14194--14194 [] @texttt if(!Rf_isEnvironment(rho)) Rf_error(" rho should be an environment");[] [184] [185] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14307--14307 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [186] [187] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14431--14431 [] @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t heta)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14438--14438 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14439--14439 [] @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)), rho, TRUE));[] [188] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14493--14493 [] @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t heta)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14506--14506 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14507--14507 [] @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)), rho, TRUE));[] [189] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14607--14607 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [190] [191] [192] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14789--14789 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [193] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14881--14881 [] @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"), R_NilValue);[] [194] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15018--15018 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [195] [196] Chapter 6 [197] [198] [199] [200] Writing index file R-exts.for [201] [202] [203] [204] [205] [206] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16038--16038 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 16869--16873 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [217] [218] [219] [220] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17155--17155 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd ata);[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 17162--17162 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata) , void *hdata)[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 17191--17191 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231] Underfull \hbox (badness 10000) in paragraph at lines 18000--18010 @texttt R_BindingTypeValue[]@textrm , @texttt R_BindingTypeMissing[]@textrm , @ texttt R_BindingTypeDelayed[]@textrm , @texttt R_ [232] [233] [234] Chapter 7 [235] [236] Chapter 8 [237] [238] Writing index file R-exts.em [239] Overfull \hbox (43.6852pt too wide) in paragraph at lines 18611--18611 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s tatic libR[] [240] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18654--18654 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18669--18669 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [241] [242] [243] [244] [245] [246] [247] [248] [249] (Function and variable index) [250] No file R-exts.vrs. (API index) [251] No file R-exts.aps. (Fortran API index) [252] No file R-exts.fors. (Experimental API index) [253] No file R-exts.aes. (Embedding API index) [254] No file R-exts.ems. (Concept index) [255] No file R-exts.cps. [256] ) (see the transcript file for additional information) Output written on R-exts.pdf (259 pages, 981998 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.toc [-1] [-2] [-3] [-4] [-5]) [-6] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.toc) (Acknowledgements) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 513--516 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1327--1328 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1328--1329 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1331--1333 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1333--1335 @texttt ~/.R/Makevars.win64[]@textrm , [17] Underfull \hbox (badness 10000) in paragraph at lines 1341--1342 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1342--1343 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1345--1347 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1347--1349 @texttt ~/.R/Makevars.win64[]@textrm , [18] [19] [20] [21] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1613--1613 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1614--1614 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1615--1615 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] Underfull \hbox (badness 10000) in paragraph at lines 1647--1654 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2058--2058 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2282--2282 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] [35] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2689--2689 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2691--2691 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [36] [37] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2830--2830 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [38] [39] Underfull \hbox (badness 7221) in paragraph at lines 3036--3039 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [40] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3100--3100 [] @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX 20PICFLAGS)")[] [41] [42] [43] [44] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3355--3355 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4733--4733 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [62] [63] [64] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4964--4964 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] [65] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4983--4983 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [66] [67] [68] [69] [70] [71] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5444--5444 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2 3 24 25[] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5460--5460 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5462--5462 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5463--5463 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5478--5478 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [72] [73] [74] [75] [76] [77] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5887--5887 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6054--6057 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [80] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6141--6141 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [81] [82] Overfull \hbox (53.86903pt too wide) in paragraph at lines 6286--6286 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [83] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6351--6351 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [84] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6428--6428 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6440--6440 []@texttt warning: argument 1 value 18446744073709551615 exceeds maximum object[] Overfull \hbox (111.35591pt too wide) in paragraph at lines 6455--6455 [] @texttt Rf_error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj) , (double) nelem);[] Writing index file R-exts.ap [85] Underfull \hbox (badness 10000) in paragraph at lines 6508--6509 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [86] [87] [88] [89] [90] [91] Writing index file R-exts.ae Overfull \hbox (19.3769pt too wide) in paragraph at lines 7000--7000 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [92] [93] Chapter 2 [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] Underfull \hbox (badness 7451) in paragraph at lines 8143--8157 @texttt \code{"\link[=abc-class]{abc}"}[] @textrm and @texttt \code{\link[=xyz- methods]{xyz}}[] @textrm could [107] [108] Underfull \hbox (badness 10000) in paragraph at lines 8265--8272 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 8481--8486 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [111] [112] [113] [114] [115] Chapter 3 [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (43.6852pt too wide) in paragraph at lines 9335--9335 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [123] Chapter 4 [124] [125] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9604--9604 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [127] Overfull \hbox (25.25755pt too wide) in paragraph at lines 9645--9645 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [128] Overfull \hbox (20.53261pt too wide) in paragraph at lines 9751--9751 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 9781--9790 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [129] [130] [131] [132] Underfull \hbox (badness 10000) in paragraph at lines 10042--10047 @smalltt developer. apple. com/ documentation/ xcode/ diagnosing-memory-th read-and-crash-issues-early[][]@smallrm . Underfull \hbox (badness 10000) in paragraph at lines 10040--10053 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 10057--10058 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [133] [134] Overfull \hbox (78.17732pt too wide) in paragraph at lines 10208--10208 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (32.81921pt too wide) in paragraph at lines 10234--10237 [][]@smalltt https:// developer. apple. com/ documentation/ xcode/ diagno sing-memory-thread-and-crash-issues-early[][]@smallrm .| Overfull \hbox (33.15736pt too wide) in paragraph at lines 10247--10250 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 10346--10350 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 10362--10362 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 10363--10363 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 10366--10366 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10374--10374 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10413--10417 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. [137] Overfull \hbox (72.42863pt too wide) in paragraph at lines 10436--10436 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10481--10481 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10484--10484 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [138] [139] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10563--10563 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [140] [141] [142] Underfull \hbox (badness 10000) in paragraph at lines 10798--10800 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [143] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10854--10854 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10873--10873 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10884--10884 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10904--10904 [] @tex ttt 1[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10913--10913 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10914--10914 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] [144] Chapter 5 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11716--11716 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11780--11780 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [156] [157] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11946--11946 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [158] [159] [160] [161] [162] [163] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12386--12386 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13316--13316 [] @texttt Rf_error("value is not a numeric vector with at least one el ement");[] [175] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13391--13391 [] @texttt if(ign == NA_LOGICAL) Rf_error(" ignore_quotes must be TRUE or FALSE");[] [176] Underfull \hbox (badness 10000) in paragraph at lines 13452--13457 []@textrm Some use-ful pre-allocated val-ues are avail-able as @texttt R_BlankS calarString[]@textrm , [177] Underfull \hbox (badness 7576) in paragraph at lines 13631--13639 []@textrm Some con-ve-nience func-tions for work-ing with pairlist ob-jects in- clude @texttt Rf_ [178] [179] [180] [181] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13994--13994 [] @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T AG(args)));[] [182] [183] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14166--14166 [] @texttt if(!Rf_isEnvironment(rho)) Rf_error(" rho should be an environment");[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14194--14194 [] @texttt if(!Rf_isEnvironment(rho)) Rf_error(" rho should be an environment");[] [184] [185] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14307--14307 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [186] [187] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14431--14431 [] @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t heta)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14438--14438 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14439--14439 [] @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)), rho, TRUE));[] [188] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14493--14493 [] @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t heta)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14506--14506 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14507--14507 [] @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)), rho, TRUE));[] [189] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14607--14607 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [190] [191] [192] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14789--14789 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [193] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14881--14881 [] @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"), R_NilValue);[] [194] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15018--15018 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [195] [196] Chapter 6 [197] [198] [199] [200] Writing index file R-exts.for [201] [202] [203] [204] [205] [206] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16038--16038 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 16869--16873 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [217] [218] [219] [220] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17155--17155 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd ata);[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 17162--17162 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata) , void *hdata)[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 17191--17191 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231] Underfull \hbox (badness 10000) in paragraph at lines 18000--18010 @texttt R_BindingTypeValue[]@textrm , @texttt R_BindingTypeMissing[]@textrm , @ texttt R_BindingTypeDelayed[]@textrm , @texttt R_ [232] [233] [234] Chapter 7 [235] [236] Chapter 8 [237] [238] Writing index file R-exts.em [239] Overfull \hbox (43.6852pt too wide) in paragraph at lines 18611--18611 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s tatic libR[] [240] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18654--18654 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18669--18669 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [241] [242] [243] [244] [245] [246] [247] [248] [249] (Function and variable index) [250] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.vrs [251] [252] [253] [254] [255] [256] [257]) (API index) [258] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.aps [259] [260] [261] [262]) (Fortran API index) [263] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.fors) (Experimental API index) [264] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.aes [265]) (Embedding API index) [266] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.ems) (Concept index) [267] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.cps [268]) [269] ) (see the transcript file for additional information) Output written on R-exts.pdf (277 pages, 1100090 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.toc [-1] [-2] [-3] [-4] [-5]) [-6] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.toc) (Acknowledgements) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 513--516 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1327--1328 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1328--1329 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1331--1333 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1333--1335 @texttt ~/.R/Makevars.win64[]@textrm , [17] Underfull \hbox (badness 10000) in paragraph at lines 1341--1342 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1342--1343 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1345--1347 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1347--1349 @texttt ~/.R/Makevars.win64[]@textrm , [18] [19] [20] [21] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1613--1613 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1614--1614 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1615--1615 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] Underfull \hbox (badness 10000) in paragraph at lines 1647--1654 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2058--2058 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2282--2282 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] [35] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2689--2689 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2691--2691 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [36] [37] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2830--2830 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [38] [39] Underfull \hbox (badness 7221) in paragraph at lines 3036--3039 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [40] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3100--3100 [] @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX 20PICFLAGS)")[] [41] [42] [43] [44] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3355--3355 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4733--4733 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [62] [63] [64] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4964--4964 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] [65] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4983--4983 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [66] [67] [68] [69] [70] [71] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5444--5444 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2 3 24 25[] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5460--5460 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5462--5462 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5463--5463 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5478--5478 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [72] [73] [74] [75] [76] [77] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5887--5887 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6054--6057 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [80] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6141--6141 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [81] [82] Overfull \hbox (53.86903pt too wide) in paragraph at lines 6286--6286 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [83] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6351--6351 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [84] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6428--6428 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6440--6440 []@texttt warning: argument 1 value 18446744073709551615 exceeds maximum object[] Overfull \hbox (111.35591pt too wide) in paragraph at lines 6455--6455 [] @texttt Rf_error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj) , (double) nelem);[] Writing index file R-exts.ap [85] Underfull \hbox (badness 10000) in paragraph at lines 6508--6509 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [86] [87] [88] [89] [90] [91] Writing index file R-exts.ae Overfull \hbox (19.3769pt too wide) in paragraph at lines 7000--7000 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [92] [93] Chapter 2 [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] Underfull \hbox (badness 7451) in paragraph at lines 8143--8157 @texttt \code{"\link[=abc-class]{abc}"}[] @textrm and @texttt \code{\link[=xyz- methods]{xyz}}[] @textrm could [107] [108] Underfull \hbox (badness 10000) in paragraph at lines 8265--8272 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 8481--8486 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [111] [112] [113] [114] [115] Chapter 3 [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (43.6852pt too wide) in paragraph at lines 9335--9335 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [123] Chapter 4 [124] [125] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9604--9604 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [127] Overfull \hbox (25.25755pt too wide) in paragraph at lines 9645--9645 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [128] Overfull \hbox (20.53261pt too wide) in paragraph at lines 9751--9751 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 9781--9790 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [129] [130] [131] [132] Underfull \hbox (badness 10000) in paragraph at lines 10042--10047 @smalltt developer. apple. com/ documentation/ xcode/ diagnosing-memory-th read-and-crash-issues-early[][]@smallrm . Underfull \hbox (badness 10000) in paragraph at lines 10040--10053 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 10057--10058 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [133] [134] Overfull \hbox (78.17732pt too wide) in paragraph at lines 10208--10208 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (32.81921pt too wide) in paragraph at lines 10234--10237 [][]@smalltt https:// developer. apple. com/ documentation/ xcode/ diagno sing-memory-thread-and-crash-issues-early[][]@smallrm .| Overfull \hbox (33.15736pt too wide) in paragraph at lines 10247--10250 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 10346--10350 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 10362--10362 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 10363--10363 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 10366--10366 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10374--10374 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10413--10417 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. [137] Overfull \hbox (72.42863pt too wide) in paragraph at lines 10436--10436 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10481--10481 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10484--10484 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [138] [139] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10563--10563 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [140] [141] [142] Underfull \hbox (badness 10000) in paragraph at lines 10798--10800 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [143] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10854--10854 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10873--10873 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10884--10884 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10904--10904 [] @tex ttt 1[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10913--10913 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10914--10914 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] [144] Chapter 5 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11716--11716 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11780--11780 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [156] [157] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11946--11946 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [158] [159] [160] [161] [162] [163] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12386--12386 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13316--13316 [] @texttt Rf_error("value is not a numeric vector with at least one el ement");[] [175] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13391--13391 [] @texttt if(ign == NA_LOGICAL) Rf_error(" ignore_quotes must be TRUE or FALSE");[] [176] Underfull \hbox (badness 10000) in paragraph at lines 13452--13457 []@textrm Some use-ful pre-allocated val-ues are avail-able as @texttt R_BlankS calarString[]@textrm , [177] Underfull \hbox (badness 7576) in paragraph at lines 13631--13639 []@textrm Some con-ve-nience func-tions for work-ing with pairlist ob-jects in- clude @texttt Rf_ [178] [179] [180] [181] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13994--13994 [] @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T AG(args)));[] [182] [183] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14166--14166 [] @texttt if(!Rf_isEnvironment(rho)) Rf_error(" rho should be an environment");[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14194--14194 [] @texttt if(!Rf_isEnvironment(rho)) Rf_error(" rho should be an environment");[] [184] [185] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14307--14307 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [186] [187] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14431--14431 [] @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t heta)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14438--14438 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14439--14439 [] @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)), rho, TRUE));[] [188] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14493--14493 [] @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t heta)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14506--14506 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14507--14507 [] @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)), rho, TRUE));[] [189] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14607--14607 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [190] [191] [192] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14789--14789 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [193] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14881--14881 [] @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"), R_NilValue);[] [194] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15018--15018 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [195] [196] Chapter 6 [197] [198] [199] [200] Writing index file R-exts.for [201] [202] [203] [204] [205] [206] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16038--16038 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 16869--16873 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [217] [218] [219] [220] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17155--17155 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd ata);[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 17162--17162 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata) , void *hdata)[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 17191--17191 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231] Underfull \hbox (badness 10000) in paragraph at lines 18000--18010 @texttt R_BindingTypeValue[]@textrm , @texttt R_BindingTypeMissing[]@textrm , @ texttt R_BindingTypeDelayed[]@textrm , @texttt R_ [232] [233] [234] Chapter 7 [235] [236] Chapter 8 [237] [238] Writing index file R-exts.em [239] Overfull \hbox (43.6852pt too wide) in paragraph at lines 18611--18611 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s tatic libR[] [240] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18654--18654 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18669--18669 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [241] [242] [243] [244] [245] [246] [247] [248] [249] (Function and variable index) [250] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.vrs [251] [252] [253] [254] [255] [256] [257]) (API index) [258] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.aps [259] [260] [261] [262]) (Fortran API index) [263] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.fors) (Experimental API index) [264] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.aes [265]) (Embedding API index) [266] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.ems) (Concept index) [267] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-exts.cps [268]) [269] ) (see the transcript file for additional information) Output written on R-exts.pdf (277 pages, 1103631 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-intro.texi This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] [38] [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4726--4728 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5603--5603 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6298--6303 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6493--6498 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] (References) [101] (Function and variable index) [102] No file R-intro.vrs. (Concept index) [103] No file R-intro.cps. [104] ) (see the transcript file for additional information) Output written on R-intro.pdf (107 pages, 553671 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.toc) (Preface) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] [38] [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4726--4728 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5603--5603 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6298--6303 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6493--6498 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] (References) [101] (Function and variable index) [102] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.vrs [103] [104]) (Concept index) [105] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.cps [106]) [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 600947 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.toc) (Preface) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] [38] [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4726--4728 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5603--5603 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6298--6303 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6493--6498 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] (References) [101] (Function and variable index) [102] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.vrs [103] [104]) (Concept index) [105] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-intro.cps [106]) [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 603859 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-ints.texi This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1444--1444 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1446--1446 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1447--1447 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1953--1953 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3046--3052 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3709--3716 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3759--3763 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4469--4474 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] [65] [66] Chapter 9 [67] [68] Chapter 10 [69] Chapter 11 [70] Chapter 12 [71] Chapter 13 [72] [73] (Function and variable index) [74] [75] No file R-ints.vrs. (Concept index) [76] No file R-ints.cps. [77] ) (see the transcript file for additional information) Output written on R-ints.pdf (80 pages, 404273 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.toc) Chapter 1 (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.aux ) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1444--1444 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1446--1446 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1447--1447 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1953--1953 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3046--3052 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3709--3716 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3759--3763 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4469--4474 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] [65] [66] Chapter 9 [67] [68] Chapter 10 [69] Chapter 11 [70] Chapter 12 [71] Chapter 13 [72] [73] (Function and variable index) [74] [75] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.vrs [76] [77]) (Concept index) [78] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.cps) [79] ) (see the transcript file for additional information) Output written on R-ints.pdf (84 pages, 453564 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.toc) Chapter 1 (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.aux ) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1444--1444 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1446--1446 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1447--1447 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1953--1953 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3046--3052 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3709--3716 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3759--3763 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4097--4105 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4469--4474 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] [65] [66] Chapter 9 [67] [68] Chapter 10 [69] Chapter 11 [70] Chapter 12 [71] Chapter 13 [72] [73] (Function and variable index) [74] [75] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.vrs [76] [77]) (Concept index) [78] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-ints.cps) [79] ) (see the transcript file for additional information) Output written on R-ints.pdf (84 pages, 455100 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-lang.texi This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (References) [59] (Function and variable index) [60] No file R-lang.vrs. (Concept index) [61] No file R-lang.cps. [62] ) (see the transcript file for additional information) Output written on R-lang.pdf (65 pages, 336384 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.toc [-1] [-2]) [-3] [-4] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.toc) Chapter 1 (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.aux ) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (References) [59] (Function and variable index) [60] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.vrs [61]) (Concept index) [62] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.cps) [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (70 pages, 380492 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2025-12-23.13]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.toc [-1] [-2]) [-3] [-4] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.toc) (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.toc) Chapter 1 (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.aux ) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (References) [59] (Function and variable index) [60] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.vrs [61]) (Concept index) [62] (/build/reproducible-path/r-base-4.5.3.20260410/doc/manual/R-lang.cps) [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (70 pages, 382246 bytes). Transcript written on R-lang.log. installing R manuals in PDF format ... make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410' make prefix=/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr \ infodir=/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info install-info make[1]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410' make[2]: Entering directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' /usr/bin/texi2any --enable-encoding -I. R-FAQ.texi Cannot find a locale compatible with document strings translations /usr/bin/texi2any --enable-encoding -I. R-admin.texi Cannot find a locale compatible with document strings translations /usr/bin/texi2any --enable-encoding -I. R-data.texi Cannot find a locale compatible with document strings translations /usr/bin/texi2any --enable-encoding -I. R-exts.texi Cannot find a locale compatible with document strings translations /usr/bin/texi2any --enable-encoding -I. R-intro.texi Cannot find a locale compatible with document strings translations /usr/bin/texi2any --enable-encoding -I. R-ints.texi Cannot find a locale compatible with document strings translations /usr/bin/texi2any --enable-encoding -I. R-lang.texi Cannot find a locale compatible with document strings translations mkdir -p -- /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info /usr/bin/install -c -m 644 "./dir" "/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info" installing R info pages ... updating '/build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/dir' ... you need to adjust /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/dir manually make[2]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410/doc/manual' make[1]: Leaving directory '/build/reproducible-path/r-base-4.5.3.20260410' dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html gunzip -9v /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/*.gz /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.5% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-FAQ.info /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-admin.info.gz: 68.1% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-admin.info /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-data.info.gz: 70.8% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-data.info /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.9% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info-1 /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 67.7% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info-2 /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info-3.gz: 79.2% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info-3 /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info-4.gz: 87.8% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info-4 /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info.gz: 70.0% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-exts.info /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.4% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-intro.info /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-ints.info.gz: 68.9% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-ints.info /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-lang.info.gz: 72.0% -- replaced with /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/info/R-lang.info dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info rm -vf /build/reproducible-path/r-base-4.5.3.20260410/debian/r-doc-info/usr/share/info/dir \ /build/reproducible-path/r-base-4.5.3.20260410/debian/r-doc-info/usr/share/info/dir.old removed '/build/reproducible-path/r-base-4.5.3.20260410/debian/r-doc-info/usr/share/info/dir' touch install-indep-stamp dh_installdirs -pr-mathlib usr/include usr/lib \ usr/share/lintian/overrides \ usr/lib/pkgconfig dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib (cd /build/reproducible-path/r-base-4.5.3.20260410/debian/r-mathlib/usr/lib; \ ls -l ; \ mv -v libRmath.so libRmath.so.1.0.0; \ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 2380 -rw-r--r-- 1 sbuild sbuild 1630524 Apr 10 15:21 libRmath.a -rwxr-xr-x 1 sbuild sbuild 794928 Apr 10 15:21 libRmath.so drwxr-xr-x 2 sbuild sbuild 4096 Apr 10 15:23 pkgconfig renamed 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' install -m 0644 src/include/Rmath.h \ /build/reproducible-path/r-base-4.5.3.20260410/debian/r-mathlib/usr/include install -m 0644 debian/Rprofile.site /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/etc/R install -m 0644 debian/Renviron.site /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/etc/R (cd /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/etc; \ mv Makeconf repositories ldpaths ../../../../etc/R/; \ mv Renviron Renviron.ucf; \ ln -s /etc/R/Makeconf .; \ ln -s /etc/R/Renviron .; \ ln -s /etc/R/Renviron.site .; \ ln -s /etc/R/Rprofile.site .; \ ln -s /etc/R/ldpaths .; \ ln -s /etc/R/repositories . ) dh_bash-completion # edd 12 Jan 2016 new location #install -m 0644 debian/R.bash-completion \ # debian/r-base-core/usr/share/bash-completion/completions/R (cd /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/; \ ln -sv R/lib/libR.so . ) './libR.so' -> 'R/lib/libR.so' (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack) rlogo_icon.png (application/octet-stream) install -m 0644 debian/icon-class-patch/rlogo_icon.png \ debian/r-base-core/usr/share/icons/hicolor/48x48/apps install -m 0644 debian/icon-class-patch/Rlogo.svg \ debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg install -m 0644 debian/icon-class-patch/R.desktop \ debian/r-base-core/usr/share/applications rm debian/icon-class-patch/rlogo_icon.png touch install-arch-stamp *** binary-arch *** dh_testdir -a dh_testroot -a dh_installdocs -pr-base-core doc/NEWS.* README \ debian/README.Atlas \ debian/README.mathlib dh_installdocs -pr-mathlib doc/NEWS.* README \ debian/README.mathlib dh_installexamples -pr-mathlib src/nmath/standalone/test.c (cd /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .) (cd /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .) install -p -m 0644 debian/r-base-core.lintian \ /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/share/lintian/overrides/r-base-core install -p -m 0644 debian/r-recommended.lintian \ /build/reproducible-path/r-base-4.5.3.20260410/debian/r-recommended/usr/share/lintian/overrides/r-recommended install -p -m 0644 debian/r-mathlib.lintian \ /build/reproducible-path/r-base-4.5.3.20260410/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib dh_installchangelogs -a -k doc/NEWS dh_strip -a dh_compress -a dh_fixperms -a dh_link -a dh_makeshlibs -a dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /build/reproducible-path/r-base-4.5.3.20260410/debian/r-base-core/usr/lib/R/lib dpkg-shlibdeps: warning: cannot extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: cannot extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: cannot extract name and version from library name 'libtk8.6.so' dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged *** Getting graphics engine version from 'GraphicsEngine.h' header echo R_GE_version | cpp -I ./src/include/ -include R_ext/GraphicsEngine.h | tail -n1 | sed 's/^/graphicsengine:Version=/' >> debian/r-base-core.substvars dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb'. dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.5.3.20260410-1_amd64.deb'. dpkg-deb: building package 'r-base-core' in '../r-base-core_4.5.3.20260410-1_amd64.deb'. dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.5.3.20260410-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../r-base_4.5.3.20260410-1_amd64.buildinfo dpkg-genchanges --build=any -O../r-base_4.5.3.20260410-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-04-10T15:23:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 10 Apr 2026 15:23:29 +0000 | +------------------------------------------------------------------------------+ r-base_4.5.3.20260410-1_amd64.changes: -------------------------------------- Format: 1.8 Date: Fri, 10 Apr 2026 07:06:16 -0500 Source: r-base Binary: r-base-core r-base-core-dbgsym r-mathlib r-mathlib-dbgsym Architecture: amd64 Version: 4.5.3.20260410-1 Distribution: unstable Urgency: medium Maintainer: Dirk Eddelbuettel Changed-By: Dirk Eddelbuettel Description: r-base-core - GNU R core of statistical computation and graphics system r-mathlib - GNU R standalone mathematics library Changes: r-base (4.5.3.20260410-1) unstable; urgency=medium . * First beta release (svn r89857) of R 4.6.0 to be released April 24 Checksums-Sha1: 1600b4675bdb1d27be970bb97f5940ad938db938 6783884 r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb d7428dc0bac9e75c1b4c27d5f11e79aee199b556 29614464 r-base-core_4.5.3.20260410-1_amd64.deb a9a7e8c41b589781c827a50ba9f49a6fbfa30c7f 17821 r-base_4.5.3.20260410-1_amd64.buildinfo f9caf214069f0582ea959045fa41fe36093ad8be 233756 r-mathlib-dbgsym_4.5.3.20260410-1_amd64.deb b395cef280c0d09eb8b8ace75d8bb3b02e76f036 2833124 r-mathlib_4.5.3.20260410-1_amd64.deb Checksums-Sha256: bde91e5e7169111508c4fb54d8b89a26c9b453807325e5325087eea6558ec353 6783884 r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb efa83b9271bfd1920bfbbf652edc82467f401d30b9d7158001b3161cf22ad732 29614464 r-base-core_4.5.3.20260410-1_amd64.deb 60cfebeff8b2226213fc0d0022e88aa7a94f517dbb4f02c183ce1aae8996b8a3 17821 r-base_4.5.3.20260410-1_amd64.buildinfo 6ed4486b1efeb7b5cf7752fcc0bb9d53e26ed0baafc0076adafaafbd259c3da2 233756 r-mathlib-dbgsym_4.5.3.20260410-1_amd64.deb da316a04a824046f2900130fd5152347947e959f04503c3fe9001a688bdfbcc5 2833124 r-mathlib_4.5.3.20260410-1_amd64.deb Files: 3a2ad6825d1053645b1bae0deda1e6f6 6783884 debug optional r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb 85f03d4d646dfd418478d2ea4eb8ae9e 29614464 gnu-r optional r-base-core_4.5.3.20260410-1_amd64.deb 3086c693a7b49838d1ca6d4e3f7217aa 17821 gnu-r optional r-base_4.5.3.20260410-1_amd64.buildinfo 0d1a23beb44c0eb4143818207f11f68f 233756 debug optional r-mathlib-dbgsym_4.5.3.20260410-1_amd64.deb 88b69dc121ff8bccfd475ea9ef035075 2833124 gnu-r optional r-mathlib_4.5.3.20260410-1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 10 Apr 2026 15:23:30 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-base Binary: r-base-core r-base-core-dbgsym r-mathlib r-mathlib-dbgsym Architecture: amd64 Version: 4.5.3.20260410-1 Checksums-Md5: 3a2ad6825d1053645b1bae0deda1e6f6 6783884 r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb 85f03d4d646dfd418478d2ea4eb8ae9e 29614464 r-base-core_4.5.3.20260410-1_amd64.deb 0d1a23beb44c0eb4143818207f11f68f 233756 r-mathlib-dbgsym_4.5.3.20260410-1_amd64.deb 88b69dc121ff8bccfd475ea9ef035075 2833124 r-mathlib_4.5.3.20260410-1_amd64.deb Checksums-Sha1: 1600b4675bdb1d27be970bb97f5940ad938db938 6783884 r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb d7428dc0bac9e75c1b4c27d5f11e79aee199b556 29614464 r-base-core_4.5.3.20260410-1_amd64.deb f9caf214069f0582ea959045fa41fe36093ad8be 233756 r-mathlib-dbgsym_4.5.3.20260410-1_amd64.deb b395cef280c0d09eb8b8ace75d8bb3b02e76f036 2833124 r-mathlib_4.5.3.20260410-1_amd64.deb Checksums-Sha256: bde91e5e7169111508c4fb54d8b89a26c9b453807325e5325087eea6558ec353 6783884 r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb efa83b9271bfd1920bfbbf652edc82467f401d30b9d7158001b3161cf22ad732 29614464 r-base-core_4.5.3.20260410-1_amd64.deb 6ed4486b1efeb7b5cf7752fcc0bb9d53e26ed0baafc0076adafaafbd259c3da2 233756 r-mathlib-dbgsym_4.5.3.20260410-1_amd64.deb da316a04a824046f2900130fd5152347947e959f04503c3fe9001a688bdfbcc5 2833124 r-mathlib_4.5.3.20260410-1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 10 Apr 2026 15:23:28 +0000 Build-Path: /build/reproducible-path/r-base-4.5.3.20260410 Installed-Build-Depends: adwaita-icon-theme (= 50.0-1), at-spi2-common (= 2.60.0-1), autoconf (= 2.72-6), automake (= 1:1.18.1-4), autopoint (= 0.23.2-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-2), bash-completion (= 1:2.16.0-8), binutils (= 2.46-3), binutils-common (= 2.46-3), binutils-x86-64-linux-gnu (= 2.46-3), bison (= 2:3.8.2+dfsg-1+b3), bsdextrautils (= 2.42-2), bubblewrap (= 0.11.1-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), ca-certificates (= 20260223), ca-certificates-java (= 20260311), comerr-dev (= 2.1-1.47.4-1), coreutils (= 9.10-1), cpp (= 4:15.2.0-5), cpp-15 (= 15.2.0-16), cpp-15-for-host (= 15.2.0-16), cpp-15-x86-64-linux-gnu (= 15.2.0-16), cpp-for-host (= 4:15.2.0-5), cpp-x86-64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12), dbus (= 1.16.2-4), dbus-bin (= 1.16.2-4), dbus-daemon (= 1.16.2-4), dbus-session-bus-common (= 1.16.2-4), dbus-system-bus-common (= 1.16.2-4), dbus-user-session (= 1.16.2-4), dconf-gsettings-backend (= 0.49.0-4), dconf-service (= 0.49.0-4), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2), default-jdk (= 2:1.25-77), default-jdk-headless (= 2:1.25-77), default-jre (= 2:1.25-77), default-jre-headless (= 2:1.25-77), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), fontconfig (= 2.17.1-5), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-lmodern (= 2.005-1), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-16), g++-15-x86-64-linux-gnu (= 15.2.0-16), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-15 (= 15.2.0-16), gcc-15-base (= 15.2.0-16), gcc-15-for-host (= 15.2.0-16), gcc-15-x86-64-linux-gnu (= 15.2.0-16), gcc-16-base (= 16-20260322-1), gcc-for-host (= 4:15.2.0-5), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-2), gettext-base (= 0.23.2-2), gfortran-15-for-host (= 15.2.0-16), gfortran-15-x86-64-linux-gnu (= 15.2.0-16), gfortran-for-host (= 4:15.2.0-5), gfortran-x86-64-linux-gnu (= 4:15.2.0-5), gir1.2-freedesktop (= 1.86.0-6), gir1.2-freedesktop-dev (= 1.86.0-6), gir1.2-glib-2.0 (= 2.88.0-1), gir1.2-glib-2.0-dev (= 2.88.0-1), gir1.2-harfbuzz-0.0 (= 12.3.2-2+b2), gir1.2-pango-1.0 (= 1.57.1-1), girepository-tools (= 2.88.0-1), glycin-loaders (= 2.0.8-1), glycin-thumbnailers (= 2.0.8-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gtk-update-icon-cache (= 4.22.2+ds-2), gzip (= 1.13-1), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), icu-devtools (= 78.3-1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), java-common (= 0.77), krb5-multidev (= 1.22.1-2+b1), libacl1 (= 2.3.2-3), libapache-pom-java (= 33-2), libapparmor1 (= 4.1.7-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16-20260322-1), libasound2-data (= 1.2.15.3-1), libasound2t64 (= 1.2.15.3-1), libatk-bridge2.0-0t64 (= 2.60.0-1+b1), libatk1.0-0t64 (= 2.60.0-1+b1), libatomic1 (= 16-20260322-1), libatspi2.0-0t64 (= 2.60.0-1+b1), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libavahi-client3 (= 0.8-18), libavahi-common-data (= 0.8-18), libavahi-common3 (= 0.8-18), libbinutils (= 2.46-3), libblas-dev (= 3.12.1-7+b1), libblas3 (= 3.12.1-7+b1), libblkid-dev (= 2.42-2), libblkid1 (= 2.42-2), libbrotli-dev (= 1.2.0-3), libbrotli1 (= 1.2.0-3), libbsd0 (= 0.12.2-2+b1), libbz2-1.0 (= 1.0.8-6+b1), libbz2-dev (= 1.0.8-6+b1), libc-bin (= 2.42-14), libc-dev-bin (= 2.42-14), libc-gconv-modules-extra (= 2.42-14), libc6 (= 2.42-14), libc6-dev (= 2.42-14), libcairo-gobject2 (= 1.18.4-3), libcairo-script-interpreter2 (= 1.18.4-3), libcairo2 (= 1.18.4-3), libcairo2-dev (= 1.18.4-3), libcap-ng0 (= 0.9.2-1), libcap2 (= 1:2.78-1), libcc1-0 (= 16-20260322-1), libcloudproviders0 (= 0.4.0-2), libcolord2 (= 1.4.8-3), libcom-err2 (= 1.47.4-1), libcommons-logging-java (= 1.3.0-2), libcommons-parent-java (= 56-1), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.46-3), libctf0 (= 2.46-3), libcups2t64 (= 2.4.16-1+b1), libcurl4-openssl-dev (= 8.19.0-3), libcurl4t64 (= 8.19.0-3), libdatrie-dev (= 0.2.14-1), libdatrie1 (= 0.2.14-1), libdav1d7 (= 1.5.3-1+b1), libdb5.3t64 (= 5.3.28+dfsg2-11), libdbus-1-3 (= 1.16.2-4), libdconf1 (= 0.49.0-4), libde265-0 (= 1.0.18-1), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.31), libdeflate-dev (= 1.23-2+b1), libdeflate0 (= 1.23-2+b1), libdpkg-perl (= 1.23.7), libdrm-amdgpu1 (= 2.4.131-1), libdrm-common (= 2.4.131-1), libdrm-intel1 (= 2.4.131-1), libdrm2 (= 2.4.131-1), libedit2 (= 3.1-20251016-1), libelf1t64 (= 0.194-4), libepoxy0 (= 1.5.10-2+b1), libevent-2.1-7t64 (= 2.1.12-stable-10+b2), libexpat1 (= 2.7.5-1), libexpat1-dev (= 2.7.5-1), libffi-dev (= 3.5.2-4), libffi8 (= 3.5.2-4), libfile-homedir-perl (= 1.006-2), libfile-stripnondeterminism-perl (= 1.15.0-1), libfile-which-perl (= 1.27-2), libfontbox-java (= 1:1.8.16-5), libfontconfig-dev (= 2.17.1-5), libfontconfig1 (= 2.17.1-5), libfontenc1 (= 1:1.1.8-1+b3), libfreetype-dev (= 2.14.3+dfsg-1), libfreetype6 (= 2.14.3+dfsg-1), libfribidi-dev (= 1.0.16-5), libfribidi0 (= 1.0.16-5), libgbm1 (= 26.0.4-1), libgcc-15-dev (= 15.2.0-16), libgcc-s1 (= 16-20260322-1), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgdk-pixbuf-2.0-0 (= 2.44.6+dfsg-2), libgdk-pixbuf2.0-common (= 2.44.6+dfsg-2), libgfortran-15-dev (= 15.2.0-16), libgfortran5 (= 16-20260322-1), libgif7 (= 5.2.2-1+b2), libgio-2.0-dev (= 2.88.0-1), libgio-2.0-dev-bin (= 2.88.0-1), libgirepository-2.0-0 (= 2.88.0-1), libgl1 (= 1.7.0-3), libgl1-mesa-dri (= 26.0.4-1), libglib2.0-0t64 (= 2.88.0-1), libglib2.0-bin (= 2.88.0-1), libglib2.0-data (= 2.88.0-1), libglib2.0-dev (= 2.88.0-1), libglib2.0-dev-bin (= 2.88.0-1), libglvnd0 (= 1.7.0-3), libglx-mesa0 (= 26.0.4-1), libglx0 (= 1.7.0-3), libglycin-2-0 (= 2.0.8-1), libgmp-dev (= 2:6.3.0+dfsg-5+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b1), libgnutls-dane0t64 (= 3.8.12-3), libgnutls28-dev (= 3.8.12-3), libgnutls30t64 (= 3.8.12-3), libgomp1 (= 16-20260322-1), libgprofng0 (= 2.46-3), libgraphite2-3 (= 1.3.14-13), libgraphite2-dev (= 1.3.14-13), libgssapi-krb5-2 (= 1.22.1-2+b1), libgssrpc4t64 (= 1.22.1-2+b1), libgtk-3-0t64 (= 3.24.52-1), libgtk-3-common (= 3.24.52-1), libharfbuzz-cairo0 (= 12.3.2-2+b2), libharfbuzz-dev (= 12.3.2-2+b2), libharfbuzz-gobject0 (= 12.3.2-2+b2), libharfbuzz-icu0 (= 12.3.2-2+b2), libharfbuzz-subset0 (= 12.3.2-2+b2), libharfbuzz0b (= 12.3.2-2+b2), libheif-plugin-dav1d (= 1.21.2-4), libheif-plugin-libde265 (= 1.21.2-4), libheif1 (= 1.21.2-4), libhogweed6t64 (= 3.10.2-1+b1), libhwasan0 (= 16-20260322-1), libhwy1t64 (= 1.3.0-2), libice-dev (= 2:1.1.1-1+b1), libice6 (= 2:1.1.1-1+b1), libicu-dev (= 78.3-1), libicu78 (= 78.3-1), libidn2-0 (= 2.3.8-4+b1), libidn2-dev (= 2.3.8-4+b1), libintl-perl (= 1.37-1), libisl23 (= 0.27-2), libitm1 (= 16-20260322-1), libjansson4 (= 2.14-2+b4), libjbig-dev (= 2.1-6.1+b3), libjbig0 (= 2.1-6.1+b3), libjpeg-dev (= 1:2.1.5-4), libjpeg62-turbo (= 1:2.1.5-4), libjpeg62-turbo-dev (= 1:2.1.5-4), libjxl0.11 (= 0.11.2-0.1), libk5crypto3 (= 1.22.1-2+b1), libkadm5clnt-mit12 (= 1.22.1-2+b1), libkadm5srv-mit12 (= 1.22.1-2+b1), libkdb5-10t64 (= 1.22.1-2+b1), libkeyutils1 (= 1.6.3-6+b1), libkpathsea6 (= 2025.20250727.75242+ds-5+b2), libkrb5-3 (= 1.22.1-2+b1), libkrb5-dev (= 1.22.1-2+b1), libkrb5support0 (= 1.22.1-2+b1), liblapack-dev (= 3.12.1-7+b1), liblapack3 (= 3.12.1-7+b1), liblcms2-2 (= 2.17-1), libldap-dev (= 2.6.10+dfsg-1+b1), libldap2 (= 2.6.10+dfsg-1+b1), liblerc-dev (= 4.1.0+ds-1), liblerc4 (= 4.1.0+ds-1), libllvm21 (= 1:21.1.8-7), liblsan0 (= 16-20260322-1), liblzma-dev (= 5.8.3-1), liblzma5 (= 5.8.3-1), liblzo2-2 (= 2.10-3+b2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmime-charset-perl (= 1.013.1-2), libmount-dev (= 2.42-2), libmount1 (= 2.42-2), libmpc3 (= 1.3.1-3), libmpfi0 (= 1.5.4+ds-5), libmpfr6 (= 4.2.2-3), libncurses-dev (= 6.6+20251231-1), libncurses6 (= 6.6+20251231-1), libncursesw6 (= 6.6+20251231-1), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.68.1-1), libnghttp2-dev (= 1.68.1-1), libnghttp3-9 (= 1.15.0-1), libnghttp3-dev (= 1.15.0-1), libngtcp2-16 (= 1.21.0-1), libngtcp2-crypto-ossl-dev (= 1.21.0-1), libngtcp2-crypto-ossl0 (= 1.21.0-1), libngtcp2-dev (= 1.21.0-1), libnspr4 (= 2:4.38.2-1), libnss3 (= 2:3.121-1), libp11-kit-dev (= 0.26.2-2), libp11-kit0 (= 0.26.2-2), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam-systemd (= 260.1-1), libpam0g (= 1.7.0-5+b1), libpango-1.0-0 (= 1.57.1-1), libpango1.0-dev (= 1.57.1-1), libpangocairo-1.0-0 (= 1.57.1-1), libpangoft2-1.0-0 (= 1.57.1-1), libpangoxft-1.0-0 (= 1.57.1-1), libpaper-utils (= 2.2.5-0.3+b3), libpaper2 (= 2.2.5-0.3+b3), libpciaccess0 (= 0.17-3+b4), libpcre2-16-0 (= 10.46-1+b1), libpcre2-32-0 (= 10.46-1+b1), libpcre2-8-0 (= 10.46-1+b1), libpcre2-dev (= 10.46-1+b1), libpcre2-posix3 (= 10.46-1+b1), libpcsclite1 (= 2.4.1-1), libpdfbox-java (= 1:1.8.16-5), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2+b1), libpixman-1-0 (= 0.46.4-1+b1), libpixman-1-dev (= 0.46.4-1+b1), libpkgconf7 (= 2.5.1-4), libpng-dev (= 1.6.56-1), libpng16-16t64 (= 1.6.56-1), libpotrace0 (= 1.16-2+b3), libproc2-0 (= 2:4.0.4-9+b1), libpsl-dev (= 0.21.5-1), libpsl5t64 (= 0.21.5-1), libptexenc1 (= 2025.20250727.75242+ds-5+b2), libpython3-stdlib (= 3.13.9-3), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libquadmath0 (= 16-20260322-1), libreadline-dev (= 8.3-4), libreadline8t64 (= 8.3-4), librsvg2-2 (= 2.62.1+dfsg-1), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.0-2+b1), libselinux-dev (= 3.10-1), libselinux1 (= 3.10-1), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2+b1), libsepol-dev (= 3.10-1), libsepol2 (= 3.10-1), libsframe3 (= 2.46-3), libsharpyuv-dev (= 1.5.0-0.1+b1), libsharpyuv0 (= 1.5.0-0.1+b1), libsm-dev (= 2:1.2.6-1+b1), libsm6 (= 2:1.2.6-1+b1), libsmartcols1 (= 2.42-2), libsombok3 (= 2.4.0-2+b3), libsqlite3-0 (= 3.46.1-9+b1), libssh2-1-dev (= 1.11.1-2), libssh2-1t64 (= 1.11.1-2), libssl-dev (= 3.6.1-3), libssl3t64 (= 3.6.1-3), libstdc++-15-dev (= 15.2.0-16), libstdc++6 (= 16-20260322-1), libsynctex2 (= 2025.20250727.75242+ds-5+b2), libsysprof-capture-4-dev (= 50.0-1), libsystemd-shared (= 260.1-1), libsystemd0 (= 260.1-1), libtasn1-6 (= 4.21.0-2), libtasn1-6-dev (= 4.21.0-2), libtcl8.6 (= 8.6.17+dfsg-1+b1), libteckit0 (= 2.5.13+ds-1), libtexlua53-5 (= 2025.20250727.75242+ds-5+b2), libtext-charwidth-perl (= 0.04-11+b5), libtext-unidecode-perl (= 1.30-3), libtext-wrapi18n-perl (= 0.06-10), libthai-data (= 0.1.30-1), libthai-dev (= 0.1.30-1), libthai0 (= 0.1.30-1), libtiff-dev (= 4.7.1-2), libtiff6 (= 4.7.1-2), libtiffxx6 (= 4.7.1-2), libtinfo6 (= 6.6+20251231-1), libtirpc-common (= 1.3.7+ds-1), libtirpc-dev (= 1.3.7+ds-1), libtirpc3t64 (= 1.3.7+ds-1), libtk8.6 (= 8.6.17-1+b1), libtool (= 2.5.4-10), libtsan2 (= 16-20260322-1), libubsan1 (= 16-20260322-1), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 260.1-1), libunbound8 (= 1.24.2-1+b1), libunicode-linebreak-perl (= 0.0.20190101-3), libunistring5 (= 1.4.2-1), libunwind8 (= 1.8.1-0.4), libuuid1 (= 2.42-2), libvulkan1 (= 1.4.341.0-1), libwayland-client0 (= 1.24.0-2+b2), libwayland-cursor0 (= 1.24.0-2+b2), libwayland-egl1 (= 1.24.0-2+b2), libwebp-dev (= 1.5.0-0.1+b1), libwebp7 (= 1.5.0-0.1+b1), libwebpdecoder3 (= 1.5.0-0.1+b1), libwebpdemux2 (= 1.5.0-0.1+b1), libwebpmux3 (= 1.5.0-0.1+b1), libx11-6 (= 2:1.8.13-1), libx11-data (= 2:1.8.13-1), libx11-dev (= 2:1.8.13-1), libx11-xcb1 (= 2:1.8.13-1), libxau-dev (= 1:1.0.11-1+b1), libxau6 (= 1:1.0.11-1+b1), libxaw7 (= 2:1.0.16-1+b1), libxcb-dri3-0 (= 1.17.0-2+b2), libxcb-glx0 (= 1.17.0-2+b2), libxcb-present0 (= 1.17.0-2+b2), libxcb-randr0 (= 1.17.0-2+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-render0-dev (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb-shm0-dev (= 1.17.0-2+b2), libxcb-sync1 (= 1.17.0-2+b2), libxcb-xfixes0 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxcb1-dev (= 1.17.0-2+b2), libxcomposite1 (= 1:0.4.6-1+b1), libxcursor1 (= 1:1.2.3-1+b1), libxdamage1 (= 1:1.1.7-1), libxdmcp-dev (= 1:1.1.5-2), libxdmcp6 (= 1:1.1.5-2), libxext-dev (= 2:1.3.4-1+b4), libxext6 (= 2:1.3.4-1+b4), libxfixes3 (= 1:6.0.0-2+b5), libxfont2 (= 1:2.0.6-2), libxft-dev (= 2.3.6-1+b5), libxft2 (= 2.3.6-1+b5), libxi6 (= 2:1.8.2-2), libxinerama1 (= 2:1.1.4-3+b5), libxkbcommon0 (= 1.13.1-1), libxkbfile1 (= 1:1.1.0-1+b5), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-7), libxml-namespacesupport-perl (= 1.12-2), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-4), libxml2-16 (= 2.15.2+dfsg-0.1), libxmu6 (= 2:1.1.3-4), libxmuu1 (= 2:1.1.3-4), libxpm4 (= 1:3.5.17-1+b4), libxrandr2 (= 2:1.5.4-1+b4), libxrender-dev (= 1:0.9.12-1+b1), libxrender1 (= 1:0.9.12-1+b1), libxres1 (= 2:1.2.1-2), libxshmfence1 (= 1.3.3-1+b1), libxss-dev (= 1:1.2.3-1+b4), libxss1 (= 1:1.2.3-1+b4), libxt-dev (= 1:1.2.1-1.3+b1), libxt6t64 (= 1:1.2.1-1.3+b1), libxtst6 (= 2:1.2.5-1+b1), libxxf86vm1 (= 1:1.1.4-2), libyaml-tiny-perl (= 1.76-1), libz3-4 (= 4.13.3-1+b1), libzstd-dev (= 1.5.7+dfsg-3+b1), libzstd1 (= 1.5.7+dfsg-3+b1), libzzip-0-13t64 (= 0.13.78+dfsg.1-0.2), linux-libc-dev (= 6.19.11-1), lmodern (= 2.005-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), mesa-libgallium (= 26.0.4-1), mount (= 2.42-2), mpack (= 1.6-19), native-architecture (= 0.2.6), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), netbase (= 6.5), nettle-dev (= 3.10.2-1+b1), openjdk-25-jdk (= 25.0.3~7ea-2), openjdk-25-jdk-headless (= 25.0.3~7ea-2), openjdk-25-jre (= 25.0.3~7ea-2), openjdk-25-jre-headless (= 25.0.3~7ea-2), openssl (= 3.6.1-3), openssl-provider-legacy (= 3.6.1-3), pango1.0-tools (= 1.57.1-1), patch (= 2.8-2), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), preview-latex-style (= 13.2-1.1), procps (= 2:4.0.4-9+b1), python3 (= 3.13.9-3), python3-minimal (= 3.13.9-3), python3-packaging (= 26.0-1), python3.13 (= 3.13.12-1), python3.13-minimal (= 3.13.12-1), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), shared-mime-info (= 2.4-5+b3), systemd (= 260.1-1), systemd-sysv (= 260.1-1), sysvinit-utils (= 3.18-1), t1utils (= 1.41-4), tar (= 1.35+dfsg-4), tcl8.6 (= 8.6.17+dfsg-1+b1), tcl8.6-dev (= 8.6.17+dfsg-1+b1), tex-common (= 6.20), texinfo (= 7.3-2), texinfo-lib (= 7.3-2), texlive-base (= 2025.20260124-1), texlive-binaries (= 2025.20250727.75242+ds-5+b2), texlive-extra-utils (= 2025.20260124-1), texlive-fonts-extra (= 2025.20260124-1), texlive-fonts-recommended (= 2025.20260124-1), texlive-latex-base (= 2025.20260124-1), texlive-latex-extra (= 2025.20260124-1), texlive-latex-recommended (= 2025.20260124-1), texlive-luatex (= 2025.20260124-1), texlive-pictures (= 2025.20260124-1), texlive-plain-generic (= 2025.20260124-1), tk8.6 (= 8.6.17-1+b1), tk8.6-dev (= 8.6.17-1+b1), tzdata (= 2026a-3), ucf (= 3.0053), util-linux (= 2.42-2), uuid-dev (= 2.42-2), x11-common (= 1:7.7+26), x11-xkb-utils (= 7.7+9), x11proto-dev (= 2025.1-1), xauth (= 1:1.1.2-1.1), xdg-utils (= 1.2.1-2), xfonts-base (= 1:1.0.5+nmu1), xfonts-encodings (= 1:1.0.4-2.2), xfonts-utils (= 1:7.7+7), xkb-data (= 2.47-1), xorg-sgml-doctools (= 1:1.12.1-1), xserver-common (= 2:21.1.21-1), xtrans-dev (= 1.6.0-1), xvfb (= 2:21.1.21-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1775822776" +------------------------------------------------------------------------------+ | Package contents Fri, 10 Apr 2026 15:23:30 +0000 | +------------------------------------------------------------------------------+ r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb --------------------------------------------- new Debian package, version 2.0. size 6783884 bytes: control archive=1356 bytes. 1059 bytes, 12 lines control 1908 bytes, 18 lines md5sums Package: r-base-core-dbgsym Source: r-base Version: 4.5.3.20260410-1 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1217 lines md5sums 2705 bytes, 73 lines * postinst #!/bin/sh 206 bytes, 5 lines * postrm #!/bin/sh 856 bytes, 37 lines * preinst #!/bin/sh 878 bytes, 29 lines * prerm #!/bin/sh Package: r-base-core Source: r-base Version: 4.5.3.20260410-1 Architecture: amd64 Maintainer: Dirk Eddelbuettel Installed-Size: 47805 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.41), libcairo2 (>= 1.15.12), libcurl4t64 (>= 7.28.0), libdeflate0 (>= 1.0), libglib2.0-0t64 (>= 2.12.0), libgomp1 (>= 4.9), libicu78 (>= 78.1-1~), libjpeg62-turbo (>= 1.3.1), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.18.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre2-8-0 (>= 10.22), libpng16-16t64 (>= 1.6.46), libreadline8t64 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff6 (>= 4.0.3), libtirpc3t64 (>= 1.0.2), libtk8.6 (>= 8.6.0), libx11-6, libxt6t64, libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates Recommends: r-recommended, r-base-dev, r-doc-html Suggests: elpa-ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html Breaks: r-bioc-bioccheck (<< 1.42.1+dfsg-2~), r-bioc-graph (<< 1.84.1-2~), r-bioc-iranges (<< 2.40.1-3~), r-bioc-pwalign (<< 1.2.0-3~), r-cran-rlang (<< 1.1.5-2~), r-cran-testthat (<< 3.2.3~) Replaces: r-base (<= 1.4.1-1), r-recommended (<< 1.9.0) Provides: r-api-4.0, r-graphics-engine-17 Section: gnu-r Priority: optional Homepage: https://www.R-project.org/ Description: GNU R core of statistical computation and graphics system R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the core GNU R system from which only the optional documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info have been split off to somewhat reduce the size of this package. drwxr-xr-x root/root 0 2026-04-10 12:06 ./ drwxr-xr-x root/root 0 2026-04-10 12:06 ./etc/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./etc/R/ -rw-r--r-- root/root 10933 2026-04-10 12:06 ./etc/R/Makeconf -rw-r--r-- root/root 1983 2026-04-10 12:06 ./etc/R/Renviron.site -rw-r--r-- root/root 988 2026-04-10 12:06 ./etc/R/Rprofile.site -rw-r--r-- root/root 783 2026-04-10 12:06 ./etc/R/ldpaths -rw-r--r-- root/root 1179 2026-04-10 12:06 ./etc/R/repositories drwxr-xr-x root/root 0 2026-04-10 12:06 ./etc/ld.so.conf.d/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/bin/ -rwxr-xr-x root/root 9069 2026-04-10 12:06 ./usr/bin/R -rwxr-xr-x root/root 14624 2026-04-10 12:06 ./usr/bin/Rscript drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/lib/ drwxr-xr-x 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2.0. size 233756 bytes: control archive=528 bytes. 355 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: r-mathlib-dbgsym Source: r-base Version: 4.5.3.20260410-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Dirk Eddelbuettel Installed-Size: 252 Depends: r-mathlib (= 4.5.3.20260410-1) Section: debug Priority: optional Description: debug symbols for r-mathlib Build-Ids: 07e2eaf82c5ab19cdf42cf5934ef0e649b497e8b drwxr-xr-x root/root 0 2026-04-10 12:06 ./ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/lib/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/lib/debug/.build-id/07/ -rw-r--r-- root/root 247280 2026-04-10 12:06 ./usr/lib/debug/.build-id/07/e2eaf82c5ab19cdf42cf5934ef0e649b497e8b.debug drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/share/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-04-10 12:06 ./usr/share/doc/r-mathlib-dbgsym -> r-mathlib r-mathlib_4.5.3.20260410-1_amd64.deb ------------------------------------ new Debian package, version 2.0. size 2833124 bytes: control archive=2160 bytes. 1788 bytes, 39 lines control 1502 bytes, 22 lines md5sums 369 bytes, 27 lines * postinst #!/bin/sh 41 bytes, 1 lines shlibs 66 bytes, 2 lines triggers Package: r-mathlib Source: r-base Version: 4.5.3.20260410-1 Architecture: amd64 Maintainer: Dirk Eddelbuettel Installed-Size: 3466 Depends: libc6 (>= 2.41) Recommends: r-base-core (= 4.5.3.20260410-1), r-base-dev (= 4.5.3.20260410-1) Section: gnu-r Priority: optional Homepage: https://www.R-project.org/ Description: GNU R standalone mathematics library R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the libRmath shared and static libraries which can be called from standalone C or C++ code. drwxr-xr-x root/root 0 2026-04-10 12:06 ./ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/include/ -rw-r--r-- root/root 20562 2026-04-10 12:06 ./usr/include/Rmath.h drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/lib/ -rw-r--r-- root/root 583580 2026-04-10 12:06 ./usr/lib/libRmath.a lrwxrwxrwx root/root 0 2026-04-10 12:06 ./usr/lib/libRmath.so -> libRmath.so.1 lrwxrwxrwx root/root 0 2026-04-10 12:06 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0 -rw-r--r-- root/root 228176 2026-04-10 12:06 ./usr/lib/libRmath.so.1.0.0 drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 173 2026-04-10 12:06 ./usr/lib/pkgconfig/libRmath.pc drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/share/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/share/doc/r-mathlib/ -rw-r--r-- root/root 35933 2024-12-04 14:08 ./usr/share/doc/r-mathlib/NEWS.0.gz -rw-r--r-- root/root 108740 2026-03-26 23:02 ./usr/share/doc/r-mathlib/NEWS.1.gz -rw-r--r-- root/root 96634 2025-03-13 23:02 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz -rw-r--r-- root/root 229621 2026-03-26 23:02 ./usr/share/doc/r-mathlib/NEWS.2.gz -rw-r--r-- root/root 397601 2026-04-10 12:06 ./usr/share/doc/r-mathlib/NEWS.2.rds.gz -rw-r--r-- root/root 122205 2026-03-26 23:02 ./usr/share/doc/r-mathlib/NEWS.3.Rd.gz -rw-r--r-- root/root 113053 2026-03-26 23:02 ./usr/share/doc/r-mathlib/NEWS.3.gz -rw-r--r-- root/root 515370 2026-04-10 12:06 ./usr/share/doc/r-mathlib/NEWS.3.rds.gz -rw-r--r-- root/root 104231 2026-04-10 10:15 ./usr/share/doc/r-mathlib/NEWS.Rd.gz lrwxrwxrwx root/root 0 2026-04-10 12:06 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz -rw-r--r-- root/root 388849 2026-04-10 12:06 ./usr/share/doc/r-mathlib/NEWS.pdf.gz -rw-r--r-- root/root 447048 2026-04-10 12:06 ./usr/share/doc/r-mathlib/NEWS.rds.gz -rw-r--r-- root/root 2119 2025-04-01 22:15 ./usr/share/doc/r-mathlib/README.gz -rw-r--r-- root/root 3026 2026-04-10 12:03 ./usr/share/doc/r-mathlib/README.mathlib -rw-r--r-- root/root 2405 2026-04-10 12:06 ./usr/share/doc/r-mathlib/changelog.Debian.gz -rw-r--r-- root/root 95368 2026-04-10 12:06 ./usr/share/doc/r-mathlib/changelog.gz -rw-r--r-- root/root 20761 2026-04-10 12:03 ./usr/share/doc/r-mathlib/copyright drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/share/doc/r-mathlib/examples/ -rw-r--r-- root/root 1692 2025-03-13 23:02 ./usr/share/doc/r-mathlib/examples/test.c drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/share/lintian/ drwxr-xr-x root/root 0 2026-04-10 12:06 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 364 2026-04-10 12:03 ./usr/share/lintian/overrides/r-mathlib +------------------------------------------------------------------------------+ | Post Build Fri, 10 Apr 2026 15:23:32 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 10 Apr 2026 15:23:32 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 10 Apr 2026 15:23:37 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 392808 Build-Time: 554 Distribution: unstable Host Architecture: amd64 Install-Time: 5 Job: /srv/rebuilderd/tmp/rebuilderd5YCEOJ/inputs/r-base_4.5.3.20260410-1.dsc Machine Architecture: amd64 Package: r-base Package-Time: 584 Source-Version: 4.5.3.20260410-1 Space: 392808 Status: successful Version: 4.5.3.20260410-1 -------------------------------------------------------------------------------- Finished at 2026-04-10T15:23:29Z Build needed 00:09:44, 392808k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderd5YCEOJ/out checking r-base-core-dbgsym_4.5.3.20260410-1_amd64.deb: size... sha1... md5... sha256... all OK checking r-base-core_4.5.3.20260410-1_amd64.deb: size differs for r-base-core_4.5.3.20260410-1_amd64.deb