=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdE4s68s/inputs/macs_3.0.4-1_amd64.buildinfo Source: macs Version: 3.0.4-1 rebuilderd-worker node: osuosl43-amd64 +------------------------------------------------------------------------------+ | Downloading sources Tue, 19 May 2026 17:58:34 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [189 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [153 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [20.2 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [223 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,172 B] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [8,488 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [10.5 kB] Get:20 https://deb.debian.org/debian sid/main Sources [11.5 MB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [449 kB] Fetched 34.4 MB in 3s (10.3 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4-1.dsc' macs_3.0.4-1.dsc 2171 SHA256:2a8f7b74f2c3f8828e7e77be35cf41b449fa5ea530893c750b2c8b89ca774a20 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4.orig.tar.gz' macs_3.0.4.orig.tar.gz 200470087 SHA256:e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4-1.debian.tar.xz' macs_3.0.4-1.debian.tar.xz 1268072 SHA256:3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 macs_3.0.4.orig.tar.gz 3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f macs_3.0.4-1.debian.tar.xz 2a8f7b74f2c3f8828e7e77be35cf41b449fa5ea530893c750b2c8b89ca774a20 macs_3.0.4-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Tue, 19 May 2026 17:58:41 +0000 | +------------------------------------------------------------------------------+ Rebuilding macs=3.0.4-1 in /srv/rebuilderd/tmp/rebuilderdE4s68s/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdE4s68s/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdE4s68s/inputs/macs_3.0.4-1_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdE4s68s/inputs/macs_3.0.4-1_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/macs-3.0.4 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [189 kB] Get:2 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable InRelease [189 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [10.5 MB] Get:4 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main amd64 Packages [10.4 MB] Fetched 21.3 MB in 2s (9747 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260514T142722Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main amd64 python3.14 amd64 3.14.5-1 [842 kB] Fetched 842 kB in 0s (66.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt3_31xj6/python3.14_3.14.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main amd64 autoconf all 2.72-6 [494 kB] Fetched 494 kB in 0s (3944 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2xizslol/autoconf_2.72-6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.10.0-4 [700 kB] Fetched 700 kB in 0s (50.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo31qd9zd/findutils_4.10.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.4.0-1 [38.8 kB] Fetched 38.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wmos9vr/python3-build_1.4.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dpkg amd64 1.23.7 [1531 kB] Fetched 1531 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2fp719a2/dpkg_1.23.7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcrypt1 amd64 1:4.5.1-1+b1 [96.4 kB] Fetched 96.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp8y2bcnf2/libcrypt1_4.5.1-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.9-3+b1 [8348 B] Fetched 8348 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5akqpffe/libpython3-stdlib_3.13.9-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.1.6+dfsg-2+b1 [3313 kB] Fetched 3313 kB in 0s (136 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprd0n8b7s/cython3_3.1.6+dfsg-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-sklearn-lib amd64 1.8.0+dfsg-4 [4194 kB] Fetched 4194 kB in 0s (40.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ofxmk4s/python3-sklearn-lib_1.8.0+dfsg-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.14-stdlib amd64 3.14.5-1 [2275 kB] Fetched 2275 kB in 0s (120 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbjs0qx_u/libpython3.14-stdlib_3.14.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpucjhnd8t/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (135 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf1ye81gs/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libctf0 amd64 2.46-3 [92.2 kB] Fetched 92.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4_wojzqe/libctf0_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-5+b1 [4644 B] Fetched 4644 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a15.2.0-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpeazurqq4/cpp-x86-64-linux-gnu_15.2.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Fetched 40.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpso5roixy/bzip2_1.0.8-6+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.9-3+b1 [25.4 kB] Fetched 25.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptv8riql6/python3-minimal_3.13.9-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-5+b2 [175 kB] Fetched 175 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo5vncn9l/libpam-modules_1.7.0-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Fetched 52.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa2z9y29z/libgdbm-compat4t64_1.26-1+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphr_wesns/build-essential_12.12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.2+dfsg-0.1 [641 kB] Fetched 641 kB in 0s (59.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnl6bqqsk/libxml2-16_2.15.2+dfsg-0.1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-cykhash amd64 2.0.0-3+b4 [666 kB] Fetched 666 kB in 0s (9991 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp32pymf8q/python3-cykhash_2.0.0-3+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (65.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvoqnuldw/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 0s (3287 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp81zx08yw/python3-decorator_5.2.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcap-ng0 amd64 0.9.3-1 [17.9 kB] Fetched 17.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp59vm4uti/libcap-ng0_0.9.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20260223 [158 kB] Fetched 158 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdvjo7mnc/ca-certificates_20260223_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Fetched 54.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8d4gqq3s/base-passwd_3.6.8_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-hmmlearn amd64 0.3.3-1 [144 kB] Fetched 144 kB in 0s (1300 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfhs_cll1/python3-hmmlearn_0.3.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:15.2.0-5+b1 [1568 B] Fetched 1568 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpcf4d5l8l/cpp_15.2.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-2 [7540 B] Fetched 7540 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8jyerajl/python3-iniconfig_2.1.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Fetched 11.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdehz8i2a/python3-pyproject-hooks_1.2.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Fetched 1974 kB in 0s (109 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpje_zeb1g/libpython3.13-stdlib_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.12-1 [5298 kB] Fetched 5298 kB in 0s (142 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm2m8y6po/libpython3.13-dev_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-17 [23.4 MB] Fetched 23.4 MB in 0s (191 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxkr_zvk_/gcc-15-x86-64-linux-gnu_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pip all 26.0.1+dfsg-1 [1390 kB] Fetched 1390 kB in 0s (97.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvpiocowv/python3-pip_26.0.1+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp43pgul_t/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-python all 7.20260309 [114 kB] Fetched 114 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphxppeurt/dh-python_7.20260309_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtsan2 amd64 16.1.0-1 [2572 kB] Fetched 2572 kB in 0s (117 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb39ehdbp/libtsan2_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libasan8 amd64 16.1.0-1 [2888 kB] Fetched 2888 kB in 0s (126 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp60ml7l3i/libasan8_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.46-3 [1058 kB] Fetched 1058 kB in 0s (75.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpssn7yw18/binutils-x86-64-linux-gnu_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:15.2.0-5+b1 [5160 B] Fetched 5160 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpymqdijco/gcc_15.2.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.14-minimal amd64 3.14.5-1 [894 kB] Fetched 894 kB in 0s (68.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgqy6ugq3/libpython3.14-minimal_3.14.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7+b2 [2546 kB] Fetched 2546 kB in 0s (116 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbccf2ep/liblapack3_3.12.1-7+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.6.2-1 [1517 kB] Fetched 1517 kB in 0s (87.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ckefip1/openssl_3.6.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.14-minimal amd64 3.14.5-1 [2414 kB] Fetched 2414 kB in 0s (125 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm484cfu5/python3.14-minimal_3.14.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.23.2 [92.4 kB] Fetched 92.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8r9k7aes/debianutils_5.23.2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.5.2-1 [222 kB] Fetched 222 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmposb7_nz4/python3-joblib_1.5.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 binutils amd64 2.46-3 [282 kB] Fetched 282 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp06jjxd5w/binutils_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl amd64 5.40.1-7+b1 [264 kB] Fetched 264 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn_9aubzx/perl_5.40.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.16.3-4 [18.6 MB] Fetched 18.6 MB in 0s (179 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr18kz4x9/python3-scipy_1.16.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Fetched 77.7 kB in 0s (7200 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_s7tqk9/libgdbm6t64_1.26-1+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgivo38hz/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Fetched 918 kB in 0s (75.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_mku4sg/libsqlite3-0_3.46.1-9+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.6+20251231-1+b1 [442 kB] Fetched 442 kB in 0s (43.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprarl11ow/ncurses-bin_6.6+20251231-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.0-2 [116 kB] Fetched 116 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb3k8istm/libexpat1_2.8.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.19.2+dfsg-1 [847 kB] Fetched 847 kB in 0s (64.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdbj3flx2/python3-pygments_2.19.2+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcllm77kx/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:15.2.0-5+b1 [1344 B] Fetched 1344 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a15.2.0-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmppr1rp5ra/g++_15.2.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14.0 [72.6 kB] Fetched 72.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjhnq_ib1/base-files_14.0_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main amd64 linux-libc-dev all 7.0.4-1 [1959 kB] Fetched 1959 kB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz_q2892o/linux-libc-dev_7.0.4-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.4.4+ds-2 [7331 kB] Fetched 7331 kB in 0s (158 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.4.4+ds-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpu71u_9kx/python3-numpy_2.4.4+ds-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.9-3+b1 [1056 B] Fetched 1056 B in 0s (72.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsdg3s9x1/python3-all_3.13.9-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphzxr5ion/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjansson4 amd64 2.14-2+b4 [40.1 kB] Fetched 40.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppri6wyh4/libjansson4_2.14-2+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Fetched 8184 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8a8ccbiv/python3-jaraco.context_6.0.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-2 [242 kB] Fetched 242 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8e7v4jx_/gettext-base_0.23.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjiwyf6pp/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmphf3kghe1/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Fetched 2267 kB in 0s (110 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpszv23ho1/python3.13-minimal_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc6 amd64 2.42-16 [1789 kB] Fetched 1789 kB in 0s (95.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnqwicdt2/libc6_2.42-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libseccomp2 amd64 2.6.0-2+b1 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4g1aud7r/libseccomp2_2.6.0-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Fetched 729 kB in 0s (62.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsnme3g1p/libmpfr6_4.2.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026b-1 [260 kB] Fetched 260 kB in 0s (25.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_x9lyba/tzdata_2026b-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 16.1.0-1 [823 kB] Fetched 823 kB in 0s (68.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamjnokn8/libstdc++6_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.2.0-1 [43.3 kB] Fetched 43.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2vervv7h/libmd0_1.2.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgcc-s1 amd64 16.1.0-1 [74.0 kB] Fetched 74.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7divetrg/libgcc-s1_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgomp1 amd64 16.1.0-1 [151 kB] Fetched 151 kB in 0s (14.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64t5_8ad/libgomp1_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (22.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3f6v3eut/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdo3qrdkx/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-17 [12.1 MB] Fetched 12.1 MB in 0s (186 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp175nf4e/cpp-15-x86-64-linux-gnu_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 2.42-6 [144 kB] Fetched 144 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptka9ktso/libsmartcols1_2.42-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libatomic1 amd64 16.1.0-1 [10.4 kB] Fetched 10.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40przqkd/libatomic1_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libperl5.40 amd64 5.40.1-7+b1 [4319 kB] Fetched 4319 kB in 0s (127 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphii7ggg6/libperl5.40_5.40.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sysvinit-utils amd64 3.18-1 [29.7 kB] Fetched 29.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm3k3z1_t/sysvinit-utils_3.18-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bc amd64 1.07.1-4 [103 kB] Fetched 103 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmotryelt/bc_1.07.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7+b2 [206 kB] Fetched 206 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8qqg90r7/libblas3_3.12.1-7+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libselinux1 amd64 3.10-1 [85.4 kB] Fetched 85.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptuegp9vz/libselinux1_3.10-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6bhuzfqh/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 2.42-6 [172 kB] Fetched 172 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsqtzfbte/libblkid1_2.42-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libudev1 amd64 260.1-1 [133 kB] Fetched 133 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9b2ii1z4/libudev1_260.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-5+b2 [45.6 kB] Fetched 45.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp79hqaczp/libpam-modules-bin_1.7.0-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b2 [63.8 kB] Fetched 63.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpxkfxvmic/libproc2-0_4.0.4-9+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Fetched 60.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbsiss7gb/autotools-dev_20240727.1+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Fetched 480 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ugu0_ax/libunistring5_1.4.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq3hmfysx/gzip_1.13-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42-6 [99.5 kB] Fetched 99.5 kB in 0s (3416 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjw33jvow/bsdextrautils_2.42-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-3+b2 [305 kB] Fetched 305 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqwv5_5oh/libzstd1_1.5.7+dfsg-3+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6hk2x6tb/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-16-base amd64 16.1.0-1 [36.2 kB] Fetched 36.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm8hpc8wi/gcc-16-base_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgprofng0 amd64 2.46-3 [820 kB] Fetched 820 kB in 0s (72.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1pbbb53w/libgprofng0_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Fetched 181 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqfsci87d/libreadline8t64_8.3-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-5+b1 [1440 B] Fetched 1440 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a15.2.0-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp7ofh950e/gcc-x86-64-linux-gnu_15.2.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Fetched 332 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpniysq3on/m4_1.4.21-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.6.2-1 [316 kB] Fetched 316 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgt0chkp8/openssl-provider-legacy_3.6.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b2 [337 kB] Fetched 337 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdrwv6fd9/libmagic-mgc_5.46-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libstdc++-15-dev amd64 15.2.0-17 [2780 kB] Fetched 2780 kB in 0s (134 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpts7qtad0/libstdc++-15-dev_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 diffutils amd64 1:3.12-1 [405 kB] Fetched 405 kB in 0s (0 B/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp5fzw1po1/diffutils_3.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b2 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp7l6lyf7y/libmagic1t64_5.46-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdpkg-perl all 1.23.7 [669 kB] Fetched 669 kB in 0s (61.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplnhv6ejm/libdpkg-perl_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.6+20251231-1+b1 [136 kB] Fetched 136 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj3te3mva/libncursesw6_6.6+20251231-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.1.0-1 [878 kB] Fetched 878 kB in 0s (75.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpho9tj41v/libgfortran5_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 binutils-common amd64 2.46-3 [2632 kB] Fetched 2632 kB in 0s (132 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8msz918d/binutils-common_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.14 amd64 3.14.5-1 [2373 kB] Fetched 2373 kB in 0s (124 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpua4r2b_c/libpython3.14_3.14.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 7.20260309 [6752 B] Fetched 6752 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwz42ruj5/pybuild-plugin-pyproject_7.20260309_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-installer all 1.0.0+dfsg1-1 [19.4 kB] Fetched 19.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2fgamoyl/python3-installer_1.0.0+dfsg1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Fetched 918 kB in 0s (73.5 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmphi1xgsr_/zlib1g-dev_1.3.dfsg+really1.3.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-4 [25.2 kB] Fetched 25.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt3wqa156/libffi8_3.5.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-bin amd64 2.42-16 [622 kB] Fetched 622 kB in 0s (60.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuadhg_ii/libc-bin_2.42-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.47.0-1 [26.9 kB] Fetched 26.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9yoiug86/python3-wheel_0.47.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.14-dev amd64 3.14.5-1 [508 kB] Fetched 508 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxboykvi9/python3.14-dev_3.14.5-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main amd64 libdebconfclient0 amd64 0.282+b3 [7720 B] Fetched 7720 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp28a65b_u/libdebconfclient0_0.282+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhwasan0 amd64 16.1.0-1 [1580 kB] Fetched 1580 kB in 0s (99.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb3i6_u0w/libhwasan0_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Fetched 198 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiv125j8p/help2man_1.49.3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.9-3+b1 [1084 B] Fetched 1084 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5brp31iz/python3-all-dev_3.13.9-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Fetched 90.9 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp1hi7po70/zlib1g_1.3.dfsg+really1.3.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 perl-base amd64 5.40.1-7+b1 [1676 kB] Fetched 1676 kB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplxp2x6iw/perl-base_5.40.1-7+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Fetched 248 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpivutiqn5/libqhull-r8.0_2020.2-9_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1hulypj/debconf_1.5.92_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-3 [331 kB] Fetched 331 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgasn6sn5/sed_4.9-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-dev-bin amd64 2.42-16 [37.9 kB] Fetched 37.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdk01_rvf/libc-dev-bin_2.42-16_amd64.deb' Downloading dependency 1 of 220: python3.14:amd64=3.14.5-1 Downloading dependency 2 of 220: autoconf:amd64=2.72-6 Downloading dependency 3 of 220: findutils:amd64=4.10.0-4 Downloading dependency 4 of 220: python3-build:amd64=1.4.0-1 Downloading dependency 5 of 220: dpkg:amd64=1.23.7 Downloading dependency 6 of 220: libcrypt1:amd64=1:4.5.1-1+b1 Downloading dependency 7 of 220: libpython3-stdlib:amd64=3.13.9-3+b1 Downloading dependency 8 of 220: cython3:amd64=3.1.6+dfsg-2+b1 Downloading dependency 9 of 220: python3-sklearn-lib:amd64=1.8.0+dfsg-4 Downloading dependency 10 of 220: libpython3.14-stdlib:amd64=3.14.5-1 Downloading dependency 11 of 220: media-types:amd64=14.0.0 Downloading dependency 12 of 220: perl-modules-5.40:amd64=5.40.1-7 Downloading dependency 13 of 220: libctf0:amd64=2.46-3 Downloading dependency 14 of 220: cpp-x86-64-linux-gnu:amd64=4:15.2.0-5+b1 Downloading dependency 15 of 220: bzip2:amd64=1.0.8-6+b2 Downloading dependency 16 of 220: python3-minimal:amd64=3.13.9-3+b1 Downloading dependency 17 of 220: libpam-modules:amd64=1.7.0-5+b2 Downloading dependency 18 of 220: libgdbm-compat4t64:amd64=1.26-1+b2 Downloading dependency 19 of 220: build-essential:amd64=12.12 Downloading dependency 20 of 220: libxml2-16:amd64=2.15.2+dfsg-0.1 Downloading dependency 21 of 220: python3-cykhash:amd64=2.0.0-3+b4 Downloading dependency 22 of 220: python3-setuptools:amd64=78.1.1-0.1 Downloading dependency 23 of 220: python3-decorator:amd64=5.2.1-2 Downloading dependency 24 of 220: libcap-ng0:amd64=0.9.3-1 Downloading dependency 25 of 220: ca-certificates:amd64=20260223 Downloading dependency 26 of 220: base-passwd:amd64=3.6.8 Downloading dependency 27 of 220: python3-hmmlearn:amd64=0.3.3-1 Downloading dependency 28 of 220: cpp:amd64=4:15.2.0-5+b1 Downloading dependency 29 of 220: python3-iniconfig:amd64=2.1.0-2 Downloading dependency 30 of 220: python3-pyproject-hooks:amd64=1.2.0-1 Downloading dependency 31 of 220: libpython3.13-stdlib:amd64=3.13.12-1 Downloading dependency 32 of 220: libpython3.13-dev:amd64=3.13.12-1 Downloading dependency 33 of 220: gcc-15-x86-64-linux-gnu:amd64=15.2.0-17 Downloading dependency 34 of 220: python3-pip:amd64=26.0.1+dfsg-1 Downloading dependency 35 of 220: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 36 of 220: dh-python:amd64=7.20260309 Downloading dependency 37 of 220: libtsan2:amd64=16.1.0-1 Downloading dependency 38 of 220: libasan8:amd64=16.1.0-1 Downloading dependency 39 of 220: binutils-x86-64-linux-gnu:amd64=2.46-3 Downloading dependency 40 of 220: gcc:amd64=4:15.2.0-5+b1 Downloading dependency 41 of 220: libpython3.14-minimal:amd64=3.14.5-1 Downloading dependency 42 of 220: liblapack3:amd64=3.12.1-7+b2 Downloading dependency 43 of 220: openssl:amd64=3.6.2-1 Downloading dependency 44 of 220: python3.14-minimal:amd64=3.14.5-1 Downloading dependency 45 of 220: debianutils:amd64=5.23.2 Downloading dependency 46 of 220: python3-joblib:amd64=1.5.2-1 Downloading dependency 47 of 220: binutils:amd64=2.46-3 Downloading dependency 48 of 220: perl:amd64=5.40.1-7+b1 Downloading dependency 49 of 220: python3-scipy:amd64=1.16.3-4 Downloading dependency 50 of 220: libgdbm6t64:amd64=1.26-1+b2 Downloading dependency 51 of 220: netbase:amd64=6.5 Downloading dependency 52 of 220: libsqlite3-0:amd64=3.46.1-9+b1 Downloading dependency 53 of 220: ncurses-bin:amd64=6.6+20251231-1+b1 Downloading dependency 54 of 220: libexpat1:amd64=2.8.0-2 Downloading dependency 55 of 220: python3-pygments:amd64=2.19.2+dfsg-1 Downloading dependency 56 of 220: python3-more-itertools:amd64=10.8.0-1 Downloading dependency 57 of 220: g++:amd64=4:15.2.0-5+b1 Downloading dependency 58 of 220: base-files:amd64=14.0 Downloading dependency 59 of 220: linux-libc-dev:amd64=7.0.4-1 Downloading dependency 60 of 220: python3-numpy:amd64=1:2.4.4+ds-2 Downloading dependency 61 of 220: python3-all:amd64=3.13.9-3+b1 Downloading dependency 62 of 220: python3-jaraco.functools:amd64=4.1.0-1 Downloading dependency 63 of 220: libjansson4:amd64=2.14-2+b4 Downloading dependency 64 of 220: python3-jaraco.context:amd64=6.0.1-2 Downloading dependency 65 of 220: gettext-base:amd64=0.23.2-2 Downloading dependency 66 of 220: po-debconf:amd64=1.0.22 Downloading dependency 67 of 220: libaudit-common:amd64=1:4.1.2-1 Downloading dependency 68 of 220: python3.13-minimal:amd64=3.13.12-1 Downloading dependency 69 of 220: libc6:amd64=2.42-16 Downloading dependency 70 of 220: libseccomp2:amd64=2.6.0-2+b1 Downloading dependency 71 of 220: libmpfr6:amd64=4.2.2-3 Downloading dependency 72 of 220: tzdata:amd64=2026b-1 Downloading dependency 73 of 220: libstdc++6:amd64=16.1.0-1 Downloading dependency 74 of 220: libmd0:amd64=1.2.0-1 Downloading dependency 75 of 220: libgcc-s1:amd64=16.1.0-1 Downloading dependency 76 of 220: libgomp1:amd64=16.1.0-1 Downloading dependency 77 of 220: libpam-runtime:amd64=1.7.0-5 Downloading dependency 78 of 220: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 79 of 220: cpp-15-x86-64-linux-gnu:amd64=15.2.0-17 Downloading dependency 80 of 220: libsmartcols1:amd64=2.42-6 Downloading dependency 81 of 220: libatomic1:amd64=16.1.0-1 Downloading dependency 82 of 220: libperl5.40:amd64=5.40.1-7+b1 Downloading dependency 83 of 220: sysvinit-utils:amd64=3.18-1 Downloading dependency 84 of 220: bc:amd64=1.07.1-4 Downloading dependency 85 of 220: libblas3:amd64=3.12.1-7+b2 Downloading dependency 86 of 220: libselinux1:amd64=3.10-1 Downloading dependency 87 of 220: dh-strip-nondeterminism:amd64=1.15.0-1 Downloading dependency 88 of 220: libblkid1:amd64=2.42-6 Downloading dependency 89 of 220: libudev1:amd64=260.1-1 Downloading dependency 90 of 220: libpam-modules-bin:amd64=1.7.0-5+b2 Downloading dependency 91 of 220: libproc2-0:amd64=2:4.0.4-9+b2 Downloading dependency 92 of 220: autotools-dev:amd64=20240727.1+nmu1 Downloading dependency 93 of 220: libunistring5:amd64=1.4.2-1 Downloading dependency 94 of 220: gzip:amd64=1.13-1 Downloading dependency 95 of 220: bsdextrautils:amd64=2.42-6 Downloading dependency 96 of 220: libzstd1:amd64=1.5.7+dfsg-3+b2 Downloading dependency 97 of 220: python3-inflect:amd64=7.5.0-1 Downloading dependency 98 of 220: gcc-16-base:amd64=16.1.0-1 Downloading dependency 99 of 220: libgprofng0:amd64=2.46-3 Downloading dependency 100 of 220: libreadline8t64:amd64=8.3-4 Downloading dependency 101 of 220: gcc-x86-64-linux-gnu:amd64=4:15.2.0-5+b1 Downloading dependency 102 of 220: m4:amd64=1.4.21-1 Downloading dependency 103 of 220: openssl-provider-legacy:amd64=3.6.2-1 Downloading dependency 104 of 220: libmagic-mgc:amd64=1:5.46-5+b2 Downloading dependency 105 of 220: libstdc++-15-dev:amd64=15.2.0-17 Downloading dependency 106 of 220: diffutils:amd64=1:3.12-1 Downloading dependency 107 of 220: libmagic1t64:amd64=1:5.46-5+b2 Downloading dependency 108 of 220: libdpkg-perl:amd64=1.23.7 Downloading dependency 109 of 220: libncursesw6:amd64=6.6+20251231-1+b1 Downloading dependency 110 of 220: libgfortran5:amd64=16.1.0-1 Downloading dependency 111 of 220: binutils-common:amd64=2.46-3 Downloading dependency 112 of 220: libpython3.14:amd64=3.14.5-1 Downloading dependency 113 of 220: pybuild-plugin-pyproject:amd64=7.20260309 Downloading dependency 114 of 220: python3-installer:amd64=1.0.0+dfsg1-1 Downloading dependency 115 of 220: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 116 of 220: libffi8:amd64=3.5.2-4 Downloading dependency 117 of 220: libc-bin:amd64=2.42-16 Downloading dependency 118 of 220: python3-wheel:amd64=0.47.0-1 Downloading dependency 119 of 220: python3.14-dev:amd64=3.14.5-1 Downloading dependency 120 of 220: libdebconfclient0:amd64=0.282+b3 Downloading dependency 121 of 220: libhwasan0:amd64=16.1.0-1 Downloading dependency 122 of 220: help2man:amd64=1.49.3 Downloading dependency 123 of 220: python3-all-dev:amd64=3.13.9-3+b1 Downloading dependency 124 of 220: zlib1g:amd64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 125 of 220: perl-base:amd64=5.40.1-7+b1 Downloading dependency 126 of 220: libqhull-r8.0:amd64=2020.2-9 Downloading dependency 127 of 220: debconf:amd64=1.5.92 Downloading dependency 128 of 220: sed:amd64=4.9-3 Downloading dependency 129 of 220: libc-dev-bin:amd64=2.42-16 Downloading dependency 130 of 220: libmount1:amd64=2.42-6Get:1 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.42-6 [213 kB] Fetched 213 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdftt8g2n/libmount1_2.42-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.3.2-3 [32.7 kB] Fetched 32.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_34hhh5w/libacl1_2.3.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Fetched 866 kB in 0s (74.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_kxzr2iz/libpython3.13-minimal_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsystemd0 amd64 260.1-1 [446 kB] Fetched 446 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy72_x1__/libsystemd0_260.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libitm1 amd64 16.1.0-1 [27.0 kB] Fetched 27.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphao1iwkh/libitm1_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.14-dev amd64 3.14.5-1 [5444 kB] Fetched 5444 kB in 0s (159 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcam_tam4/libpython3.14-dev_3.14.5-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprk12k112/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Fetched 58.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgj3xe_rv/libelf1t64_0.195-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.31 [75.7 kB] Fetched 75.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn0d3ybeh/libdebhelper-perl_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Fetched 13.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4noh4goq/python3-autocommand_2.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcc1-0 amd64 16.1.0-1 [46.1 kB] Fetched 46.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2bfvvcx9/libcc1-0_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 mawk amd64 1.3.4.20260302-1 [142 kB] Fetched 142 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbt2o9tsf/mawk_1.3.4.20260302-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-5+b1 [1204 B] Fetched 1204 B in 0s (0 B/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a15.2.0-5+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpjr810e31/g++-x86-64-linux-gnu_15.2.0-5+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpum06s2ay/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Fetched 500 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1tqhb3pp/libsimde-dev_0.8.4~rc3-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx5tgcozz/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.4.4+ds-2 [136 kB] Fetched 136 kB in 0s (0 B/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.4+ds-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpduqq4cxh/python3-numpy-dev_2.4.4+ds-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 2.42-6 [1220 kB] Fetched 1220 kB in 0s (82.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv5l1ewsw/util-linux_2.42-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-15 amd64 15.2.0-17 [1276 B] Fetched 1276 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3yk37s03/cpp-15_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.6.2-1 [2482 kB] Fetched 2482 kB in 0s (130 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqcly8jl/libssl3t64_3.6.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2w15gey6/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 patch amd64 2.8-2 [134 kB] Fetched 134 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmovgs5uf/patch_2.8-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (76.3 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmphvz5jypm/automake_1.18.1-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp53xoc8ak/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.3-1 [332 kB] Fetched 332 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz_flkh_x/liblzma5_5.8.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-2 [1684 kB] Fetched 1684 kB in 0s (110 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxzlf24l/gettext_0.23.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-17 [13.2 MB] Fetched 13.2 MB in 0s (186 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwed9kl_/g++-15-x86-64-linux-gnu_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.8.0-2 [172 kB] Fetched 172 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe9nrsp68/libexpat1-dev_2.8.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit1 amd64 1:4.1.2-1+b1 [60.2 kB] Fetched 60.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpfpiqg8dr/libaudit1_4.1.2-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc6-dev amd64 2.42-16 [1996 kB] Fetched 1996 kB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdni2o6ft/libc6-dev_2.42-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bash amd64 5.3-3 [1559 kB] Fetched 1559 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm1n10m8z/bash_5.3-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libctf-nobfd0 amd64 2.46-3 [160 kB] Fetched 160 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1vdj15ri/libctf-nobfd0_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.46-1+b2 [297 kB] Fetched 297 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzxr03el/libpcre2-8-0_10.46-1+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15 amd64 15.2.0-17 [542 kB] Fetched 542 kB in 0s (53.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe0_96_gb/gcc-15_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Fetched 98.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcrd982gu/dash_0.5.12-12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgcc-15-dev amd64 15.2.0-17 [2718 kB] Fetched 2718 kB in 0s (134 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpen29o79e/libgcc-15-dev_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 make amd64 4.4.1-3 [463 kB] Fetched 463 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl65p16sn/make_4.4.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.12-1 [504 kB] Fetched 504 kB in 0s (49.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbkwytmi/python3.13-dev_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.9-3+b1 [1080 B] Fetched 1080 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqu8vyvw/libpython3-all-dev_3.13.9-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Fetched 1469 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgd9uqbis/man-db_2.13.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Fetched 776 kB in 0s (68.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmc2ea_qf/python3.13_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-5+b2 [66.3 kB] Fetched 66.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppyldq33r/libpam0g_1.7.0-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblsan0 amd64 16.1.0-1 [1281 kB] Fetched 1281 kB in 0s (95.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmo7ni3f6/liblsan0_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6+b2 [39.9 kB] Fetched 39.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5uaayuc_/libbz2-1.0_1.0.8-6+b2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main amd64 liblocale-gettext-perl amd64 1.07-9 [14.8 kB] Fetched 14.8 kB in 0s (857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo5c_cxdx/liblocale-gettext-perl_1.07-9_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Fetched 21.2 kB in 0s (959 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuamheh6a/python3-threadpoolctl_3.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.6+20251231-1+b1 [350 kB] Fetched 350 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpellajhg2/libtinfo6_6.6+20251231-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.10-1 [3142 kB] Fetched 3142 kB in 0s (137 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx1xv9l99/coreutils_9.10-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.9-3+b1 [29.8 kB] Fetched 29.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1cllx70e/python3-dev_3.13.9-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-15 amd64 15.2.0-17 [28.0 kB] Fetched 28.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxfnjsm76/g++-15_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.9-3+b1 [25.4 kB] Fetched 25.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzp90yew/python3_3.13.9-3+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b2 [560 kB] Fetched 560 kB in 0s (54.4 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp_q_yl54d/libgmp10_6.3.0+dfsg-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Fetched 1336 kB in 0s (92.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphyol02c3/groff-base_1.24.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-15-base amd64 15.2.0-17 [36.8 kB] Fetched 36.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphhmo563x/gcc-15-base_15.2.0-17_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 26.0-1 [64.3 kB] Fetched 64.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpev2amyl6/python3-packaging_26.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-2 [27.2 kB] Fetched 27.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjlve1gmr/python3-pluggy_1.6.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-2 [37.2 kB] Fetched 37.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp34sw04dk/python3-typeguard_4.4.4-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwpxeggut/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9+b2 [880 kB] Fetched 880 kB in 0s (76.5 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpo7z3ozqm/procps_4.0.4-9+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 16.1.0-1 [148 kB] Fetched 148 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyd89biwi/libquadmath0_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11+b1 [709 kB] Fetched 709 kB in 0s (65.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoj5qkpoo/libdb5.3t64_5.3.28+dfsg2-11+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 2.42-6 [33.1 kB] Fetched 33.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppl6n22i1/libuuid1_2.42-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 9.0.3-1 [273 kB] Fetched 273 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9mc2u_em/python3-pytest_9.0.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Fetched 443 kB in 0s (43.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx02bqy30/grep_3.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.3-1 [740 kB] Fetched 740 kB in 0s (67.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1h9de5tc/xz-utils_5.8.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnhlho2vp/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-2 [770 kB] Fetched 770 kB in 0s (69.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph0t1_1jn/autopoint_0.23.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj_48mcro/dh-autoreconf_22_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.12-1 [2187 kB] Fetched 2187 kB in 0s (124 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5fnsu4ju/libpython3.13_3.13.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.42-16 [1098 kB] Fetched 1098 kB in 0s (86.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_ndeg4m/libc-gconv-modules-extra_2.42-16_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Fetched 539 kB in 0s (50.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqk89fkpr/libtool_2.5.4-11_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.5.2-4 [23.0 kB] Fetched 23.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpjznqogln/libattr1_2.5.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libubsan1 amd64 16.1.0-1 [1136 kB] Fetched 1136 kB in 0s (87.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7gyzay73/libubsan1_16.1.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.31 [932 kB] Fetched 932 kB in 0s (79.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi5kk4lt_/debhelper_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbinutils amd64 2.46-3 [548 kB] Fetched 548 kB in 0s (54.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5b58rkjj/libbinutils_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-sklearn all 1.8.0+dfsg-4 [2652 kB] Fetched 2652 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0dmafz2/python3-sklearn_1.8.0+dfsg-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9gpt70zl/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmbge_kul/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dpkg-dev all 1.23.7 [1318 kB] Fetched 1318 kB in 0s (89.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6mmupm0/dpkg-dev_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 9.1.0-3 [25.3 kB] Fetched 25.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsg31xuo9/libjs-sphinxdoc_9.1.0-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.27-2 [664 kB] Fetched 664 kB in 0s (52.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptq2drwwu/libisl23_0.27-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Fetched 49.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7r4389a2/libpipeline1_1.5.8-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-4 [817 kB] Fetched 817 kB in 0s (62.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0b6y2k0g/tar_1.35+dfsg-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Fetched 69.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn4jj2v7i/libuchardet0_0.0.8-2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvh65ruh1/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5+b2 [42.6 kB] Fetched 42.6 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.46-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp3n7ln71g/file_5.46-5+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Fetched 52.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrhkv086/libmpc3_1.3.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_t0pqo5c/hostname_3.25_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsframe3 amd64 2.46-3 [84.7 kB] Fetched 84.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5gf8vhlz/libsframe3_2.46-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjb0_9b0e/dwz_0.16-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.9-3+b1 [8588 B] Fetched 8588 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp258alj79/libpython3-dev_3.13.9-3+b1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpnc9xpn5q/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o 127.0.0.1 - - [19/May/2026 17:59:58] code 404, message File not found 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42117 ./ InRelease 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:42117 ./ Release [462 B] 127.0.0.1 - - [19/May/2026 17:59:58] code 404, message File not found 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42117 ./ Release.gpg 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:42117 ./ Packages [263 kB] Fetched 264 kB in 0s (18.6 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./gcc-16-base_16.1.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./libc-gconv-modules-extra_2.42-16_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./libc6_2.42-16_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./libgcc-s1_16.1.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./mawk_1.3.4.20260302-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./base-files_14.0_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./libtinfo6_6.6%2b20251231-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./debianutils_5.23.2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./bash_5.3-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./libacl1_2.3.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 17:59:58] "GET /./libattr1_2.5.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - 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I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o 127.0.0.1 - - [19/May/2026 18:00:00] code 404, message File not found 127.0.0.1 - - [19/May/2026 18:00:00] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42117 ./ InRelease 127.0.0.1 - - [19/May/2026 18:00:00] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:42117 ./ Release 127.0.0.1 - - [19/May/2026 18:00:00] code 404, message File not found 127.0.0.1 - - [19/May/2026 18:00:00] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42117 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [19/May/2026 18:00:15] "GET /./libexpat1_2.8.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:15] "GET /./liblocale-gettext-perl_1.07-9_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:15] "GET /./libpython3.13-minimal_3.13.12-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:15] "GET /./python3.13-minimal_3.13.12-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:15] "GET /./python3-minimal_3.13.9-3%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:15] "GET /./media-types_14.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:15] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:15] "GET /./tzdata_2026b-1_all.deb HTTP/1.1" 200 - 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127.0.0.1 - - [19/May/2026 18:00:16] "GET /./pybuild-plugin-pyproject_7.20260309_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./libpython3.14-dev_3.14.5-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./python3.14-dev_3.14.5-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./help2man_1.49.3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./libpython3-dev_3.13.9-3%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./libpython3-all-dev_3.13.9-3%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./python3.13-dev_3.13.12-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./libjs-sphinxdoc_9.1.0-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./python3-dev_3.13.9-3%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./python3-all-dev_3.13.9-3%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./libsimde-dev_0.8.4%7erc3-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./python3-pluggy_1.6.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./python3-pytest_9.0.3-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/May/2026 18:00:16] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpnc9xpn5q/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o Reading package lists... Building dependency tree... Reading state information... python3.14 is already the newest version (3.14.5-1). python3.14 set to manually installed. autoconf is already the newest version (2.72-6). autoconf set to manually installed. findutils is already the newest version (4.10.0-4). python3-build is already the newest version (1.4.0-1). python3-build set to manually installed. dpkg is already the newest version (1.23.7). libcrypt1 is already the newest version (1:4.5.1-1+b1). libpython3-stdlib is already the newest version (3.13.9-3+b1). libpython3-stdlib set to manually installed. cython3 is already the newest version (3.1.6+dfsg-2+b1). cython3 set to manually installed. python3-sklearn-lib is already the newest version (1.8.0+dfsg-4). python3-sklearn-lib set to manually installed. libpython3.14-stdlib is already the newest version (3.14.5-1). libpython3.14-stdlib set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. libctf0 is already the newest version (2.46-3). libctf0 set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:15.2.0-5+b1). cpp-x86-64-linux-gnu set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. python3-minimal is already the newest version (3.13.9-3+b1). python3-minimal set to manually installed. libpam-modules is already the newest version (1.7.0-5+b2). libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libxml2-16 is already the newest version (2.15.2+dfsg-0.1). libxml2-16 set to manually installed. python3-cykhash is already the newest version (2.0.0-3+b4). python3-cykhash set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. libcap-ng0 is already the newest version (0.9.3-1). ca-certificates is already the newest version (20260223). ca-certificates set to manually installed. base-passwd is already the newest version (3.6.8). python3-hmmlearn is already the newest version (0.3.3-1). python3-hmmlearn set to manually installed. cpp is already the newest version (4:15.2.0-5+b1). cpp set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. python3-pyproject-hooks is already the newest version (1.2.0-1). python3-pyproject-hooks set to manually installed. libpython3.13-stdlib is already the newest version (3.13.12-1). libpython3.13-stdlib set to manually installed. libpython3.13-dev is already the newest version (3.13.12-1). libpython3.13-dev set to manually installed. gcc-15-x86-64-linux-gnu is already the newest version (15.2.0-17). gcc-15-x86-64-linux-gnu set to manually installed. python3-pip is already the newest version (26.0.1+dfsg-1). python3-pip set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. dh-python is already the newest version (7.20260309). dh-python set to manually installed. libtsan2 is already the newest version (16.1.0-1). libtsan2 set to manually installed. libasan8 is already the newest version (16.1.0-1). libasan8 set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.46-3). binutils-x86-64-linux-gnu set to manually installed. gcc is already the newest version (4:15.2.0-5+b1). gcc set to manually installed. libpython3.14-minimal is already the newest version (3.14.5-1). libpython3.14-minimal set to manually installed. liblapack3 is already the newest version (3.12.1-7+b2). liblapack3 set to manually installed. openssl is already the newest version (3.6.2-1). openssl set to manually installed. python3.14-minimal is already the newest version (3.14.5-1). python3.14-minimal set to manually installed. debianutils is already the newest version (5.23.2). python3-joblib is already the newest version (1.5.2-1). python3-joblib set to manually installed. binutils is already the newest version (2.46-3). binutils set to manually installed. perl is already the newest version (5.40.1-7+b1). perl set to manually installed. python3-scipy is already the newest version (1.16.3-4). python3-scipy set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. libsqlite3-0 is already the newest version (3.46.1-9+b1). libsqlite3-0 set to manually installed. ncurses-bin is already the newest version (6.6+20251231-1+b1). libexpat1 is already the newest version (2.8.0-2). libexpat1 set to manually installed. python3-pygments is already the newest version (2.19.2+dfsg-1). python3-pygments set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. g++ is already the newest version (4:15.2.0-5+b1). g++ set to manually installed. base-files is already the newest version (14.0). linux-libc-dev is already the newest version (7.0.4-1). linux-libc-dev set to manually installed. python3-numpy is already the newest version (1:2.4.4+ds-2). python3-numpy set to manually installed. python3-all is already the newest version (3.13.9-3+b1). python3-all set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. gettext-base is already the newest version (0.23.2-2). gettext-base set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). python3.13-minimal is already the newest version (3.13.12-1). python3.13-minimal set to manually installed. libc6 is already the newest version (2.42-16). libseccomp2 is already the newest version (2.6.0-2+b1). libseccomp2 set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. tzdata is already the newest version (2026b-1). tzdata set to manually installed. libstdc++6 is already the newest version (16.1.0-1). libstdc++6 set to manually installed. libmd0 is already the newest version (1.2.0-1). libgcc-s1 is already the newest version (16.1.0-1). libgomp1 is already the newest version (16.1.0-1). libgomp1 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. cpp-15-x86-64-linux-gnu is already the newest version (15.2.0-17). cpp-15-x86-64-linux-gnu set to manually installed. libsmartcols1 is already the newest version (2.42-6). libatomic1 is already the newest version (16.1.0-1). libatomic1 set to manually installed. libperl5.40 is already the newest version (5.40.1-7+b1). libperl5.40 set to manually installed. sysvinit-utils is already the newest version (3.18-1). bc is already the newest version (1.07.1-4). bc set to manually installed. libblas3 is already the newest version (3.12.1-7+b2). libblas3 set to manually installed. libselinux1 is already the newest version (3.10-1). dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. libblkid1 is already the newest version (2.42-6). libudev1 is already the newest version (260.1-1). libpam-modules-bin is already the newest version (1.7.0-5+b2). libproc2-0 is already the newest version (2:4.0.4-9+b2). libproc2-0 set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. gzip is already the newest version (1.13-1). bsdextrautils is already the newest version (2.42-6). bsdextrautils set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-3+b2). python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. gcc-16-base is already the newest version (16.1.0-1). libgprofng0 is already the newest version (2.46-3). libgprofng0 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:15.2.0-5+b1). gcc-x86-64-linux-gnu set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. openssl-provider-legacy is already the newest version (3.6.2-1). libmagic-mgc is already the newest version (1:5.46-5+b2). libmagic-mgc set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-17). libstdc++-15-dev set to manually installed. diffutils is already the newest version (1:3.12-1). libmagic1t64 is already the newest version (1:5.46-5+b2). libmagic1t64 set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libncursesw6 is already the newest version (6.6+20251231-1+b1). libncursesw6 set to manually installed. libgfortran5 is already the newest version (16.1.0-1). libgfortran5 set to manually installed. binutils-common is already the newest version (2.46-3). binutils-common set to manually installed. libpython3.14 is already the newest version (3.14.5-1). libpython3.14 set to manually installed. pybuild-plugin-pyproject is already the newest version (7.20260309). pybuild-plugin-pyproject set to manually installed. python3-installer is already the newest version (1.0.0+dfsg1-1). python3-installer set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. libffi8 is already the newest version (3.5.2-4). libffi8 set to manually installed. libc-bin is already the newest version (2.42-16). python3-wheel is already the newest version (0.47.0-1). python3-wheel set to manually installed. python3.14-dev is already the newest version (3.14.5-1). python3.14-dev set to manually installed. libdebconfclient0 is already the newest version (0.282+b3). libhwasan0 is already the newest version (16.1.0-1). libhwasan0 set to manually installed. help2man is already the newest version (1.49.3). help2man set to manually installed. python3-all-dev is already the newest version (3.13.9-3+b1). python3-all-dev set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). perl-base is already the newest version (5.40.1-7+b1). libqhull-r8.0 is already the newest version (2020.2-9). libqhull-r8.0 set to manually installed. debconf is already the newest version (1.5.92). sed is already the newest version (4.9-3). libc-dev-bin is already the newest version (2.42-16). libc-dev-bin set to manually installed. libmount1 is already the newest version (2.42-6). libacl1 is already the newest version (2.3.2-3). libpython3.13-minimal is already the newest version (3.13.12-1). libpython3.13-minimal set to manually installed. libsystemd0 is already the newest version (260.1-1). libitm1 is already the newest version (16.1.0-1). libitm1 set to manually installed. libpython3.14-dev is already the newest version (3.14.5-1). libpython3.14-dev set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libelf1t64 is already the newest version (0.195-1). libelf1t64 set to manually installed. libdebhelper-perl is already the newest version (13.31). libdebhelper-perl set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. libcc1-0 is already the newest version (16.1.0-1). libcc1-0 set to manually installed. mawk is already the newest version (1.3.4.20260302-1). g++-x86-64-linux-gnu is already the newest version (4:15.2.0-5+b1). g++-x86-64-linux-gnu set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libsimde-dev is already the newest version (0.8.4~rc3-5). libsimde-dev set to manually installed. ncurses-base is already the newest version (6.6+20251231-1). python3-numpy-dev is already the newest version (1:2.4.4+ds-2). python3-numpy-dev set to manually installed. util-linux is already the newest version (2.42-6). cpp-15 is already the newest version (15.2.0-17). cpp-15 set to manually installed. libssl3t64 is already the newest version (3.6.2-1). python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. automake is already the newest version (1:1.18.1-4). automake set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. liblzma5 is already the newest version (5.8.3-1). gettext is already the newest version (0.23.2-2). gettext set to manually installed. g++-15-x86-64-linux-gnu is already the newest version (15.2.0-17). g++-15-x86-64-linux-gnu set to manually installed. libexpat1-dev is already the newest version (2.8.0-2). libexpat1-dev set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). libc6-dev is already the newest version (2.42-16). libc6-dev set to manually installed. bash is already the newest version (5.3-3). libctf-nobfd0 is already the newest version (2.46-3). libctf-nobfd0 set to manually installed. libpcre2-8-0 is already the newest version (10.46-1+b2). gcc-15 is already the newest version (15.2.0-17). gcc-15 set to manually installed. dash is already the newest version (0.5.12-12). libgcc-15-dev is already the newest version (15.2.0-17). libgcc-15-dev set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. python3.13-dev is already the newest version (3.13.12-1). python3.13-dev set to manually installed. libpython3-all-dev is already the newest version (3.13.9-3+b1). libpython3-all-dev set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. python3.13 is already the newest version (3.13.12-1). python3.13 set to manually installed. libpam0g is already the newest version (1.7.0-5+b2). liblsan0 is already the newest version (16.1.0-1). liblsan0 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). liblocale-gettext-perl is already the newest version (1.07-9). liblocale-gettext-perl set to manually installed. python3-threadpoolctl is already the newest version (3.1.0-1). python3-threadpoolctl set to manually installed. libtinfo6 is already the newest version (6.6+20251231-1+b1). coreutils is already the newest version (9.10-1). python3-dev is already the newest version (3.13.9-3+b1). python3-dev set to manually installed. g++-15 is already the newest version (15.2.0-17). g++-15 set to manually installed. python3 is already the newest version (3.13.9-3+b1). python3 set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. gcc-15-base is already the newest version (15.2.0-17). gcc-15-base set to manually installed. python3-packaging is already the newest version (26.0-1). python3-packaging set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. python3-typeguard is already the newest version (4.4.4-2). python3-typeguard set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. procps is already the newest version (2:4.0.4-9+b2). procps set to manually installed. libquadmath0 is already the newest version (16.1.0-1). libquadmath0 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libuuid1 is already the newest version (2.42-6). python3-pytest is already the newest version (9.0.3-1). python3-pytest set to manually installed. grep is already the newest version (3.12-1). xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. init-system-helpers is already the newest version (1.69). autopoint is already the newest version (0.23.2-2). autopoint set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libpython3.13 is already the newest version (3.13.12-1). libpython3.13 set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-16). libtool is already the newest version (2.5.4-11). libtool set to manually installed. libattr1 is already the newest version (1:2.5.2-4). libubsan1 is already the newest version (16.1.0-1). libubsan1 set to manually installed. debhelper is already the newest version (13.31). debhelper set to manually installed. libbinutils is already the newest version (2.46-3). libbinutils set to manually installed. python3-sklearn is already the newest version (1.8.0+dfsg-4). python3-sklearn set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. libjs-sphinxdoc is already the newest version (9.1.0-3). libjs-sphinxdoc set to manually installed. libisl23 is already the newest version (0.27-2). libisl23 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. tar is already the newest version (1.35+dfsg-4). libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. file is already the newest version (1:5.46-5+b2). file set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. hostname is already the newest version (3.25). libsframe3 is already the newest version (2.46-3). libsframe3 set to manually installed. dwz is already the newest version (0.16-4). dwz set to manually installed. libpython3-dev is already the newest version (3.13.9-3+b1). libpython3-dev set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o (Reading database ... 24463 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.SKGI0H4H8o... I: success in 91.6157 seconds Downloading dependency 131 of 220: libacl1:amd64=2.3.2-3 Downloading dependency 132 of 220: libpython3.13-minimal:amd64=3.13.12-1 Downloading dependency 133 of 220: libsystemd0:amd64=260.1-1 Downloading dependency 134 of 220: libitm1:amd64=16.1.0-1 Downloading dependency 135 of 220: libpython3.14-dev:amd64=3.14.5-1 Downloading dependency 136 of 220: python3-jaraco.text:amd64=4.0.0-1 Downloading dependency 137 of 220: libelf1t64:amd64=0.195-1 Downloading dependency 138 of 220: libdebhelper-perl:amd64=13.31 Downloading dependency 139 of 220: python3-autocommand:amd64=2.2.2-4 Downloading dependency 140 of 220: libcc1-0:amd64=16.1.0-1 Downloading dependency 141 of 220: mawk:amd64=1.3.4.20260302-1 Downloading dependency 142 of 220: g++-x86-64-linux-gnu:amd64=4:15.2.0-5+b1 Downloading dependency 143 of 220: libfile-stripnondeterminism-perl:amd64=1.15.0-1 Downloading dependency 144 of 220: libsimde-dev:amd64=0.8.4~rc3-5 Downloading dependency 145 of 220: ncurses-base:amd64=6.6+20251231-1 Downloading dependency 146 of 220: python3-numpy-dev:amd64=1:2.4.4+ds-2 Downloading dependency 147 of 220: util-linux:amd64=2.42-6 Downloading dependency 148 of 220: cpp-15:amd64=15.2.0-17 Downloading dependency 149 of 220: libssl3t64:amd64=3.6.2-1 Downloading dependency 150 of 220: python3-typing-extensions:amd64=4.15.0-2 Downloading dependency 151 of 220: patch:amd64=2.8-2 Downloading dependency 152 of 220: automake:amd64=1:1.18.1-4 Downloading dependency 153 of 220: python3-zipp:amd64=3.23.0-1 Downloading dependency 154 of 220: liblzma5:amd64=5.8.3-1 Downloading dependency 155 of 220: gettext:amd64=0.23.2-2 Downloading dependency 156 of 220: g++-15-x86-64-linux-gnu:amd64=15.2.0-17 Downloading dependency 157 of 220: libexpat1-dev:amd64=2.8.0-2 Downloading dependency 158 of 220: libaudit1:amd64=1:4.1.2-1+b1 Downloading dependency 159 of 220: libc6-dev:amd64=2.42-16 Downloading dependency 160 of 220: bash:amd64=5.3-3 Downloading dependency 161 of 220: libctf-nobfd0:amd64=2.46-3 Downloading dependency 162 of 220: libpcre2-8-0:amd64=10.46-1+b2 Downloading dependency 163 of 220: gcc-15:amd64=15.2.0-17 Downloading dependency 164 of 220: dash:amd64=0.5.12-12 Downloading dependency 165 of 220: libgcc-15-dev:amd64=15.2.0-17 Downloading dependency 166 of 220: make:amd64=4.4.1-3 Downloading dependency 167 of 220: python3.13-dev:amd64=3.13.12-1 Downloading dependency 168 of 220: libpython3-all-dev:amd64=3.13.9-3+b1 Downloading dependency 169 of 220: man-db:amd64=2.13.1-1 Downloading dependency 170 of 220: python3.13:amd64=3.13.12-1 Downloading dependency 171 of 220: libpam0g:amd64=1.7.0-5+b2 Downloading dependency 172 of 220: liblsan0:amd64=16.1.0-1 Downloading dependency 173 of 220: libbz2-1.0:amd64=1.0.8-6+b2 Downloading dependency 174 of 220: liblocale-gettext-perl:amd64=1.07-9 Downloading dependency 175 of 220: python3-threadpoolctl:amd64=3.1.0-1 Downloading dependency 176 of 220: libtinfo6:amd64=6.6+20251231-1+b1 Downloading dependency 177 of 220: coreutils:amd64=9.10-1 Downloading dependency 178 of 220: python3-dev:amd64=3.13.9-3+b1 Downloading dependency 179 of 220: g++-15:amd64=15.2.0-17 Downloading dependency 180 of 220: python3:amd64=3.13.9-3+b1 Downloading dependency 181 of 220: libgmp10:amd64=2:6.3.0+dfsg-5+b2 Downloading dependency 182 of 220: groff-base:amd64=1.24.1-1 Downloading dependency 183 of 220: gcc-15-base:amd64=15.2.0-17 Downloading dependency 184 of 220: python3-packaging:amd64=26.0-1 Downloading dependency 185 of 220: python3-pluggy:amd64=1.6.0-2 Downloading dependency 186 of 220: python3-typeguard:amd64=4.4.4-2 Downloading dependency 187 of 220: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 188 of 220: procps:amd64=2:4.0.4-9+b2 Downloading dependency 189 of 220: libquadmath0:amd64=16.1.0-1 Downloading dependency 190 of 220: libdb5.3t64:amd64=5.3.28+dfsg2-11+b1 Downloading dependency 191 of 220: libuuid1:amd64=2.42-6 Downloading dependency 192 of 220: python3-pytest:amd64=9.0.3-1 Downloading dependency 193 of 220: grep:amd64=3.12-1 Downloading dependency 194 of 220: xz-utils:amd64=5.8.3-1 Downloading dependency 195 of 220: init-system-helpers:amd64=1.69 Downloading dependency 196 of 220: autopoint:amd64=0.23.2-2 Downloading dependency 197 of 220: dh-autoreconf:amd64=22 Downloading dependency 198 of 220: libpython3.13:amd64=3.13.12-1 Downloading dependency 199 of 220: libc-gconv-modules-extra:amd64=2.42-16 Downloading dependency 200 of 220: libtool:amd64=2.5.4-11 Downloading dependency 201 of 220: libattr1:amd64=1:2.5.2-4 Downloading dependency 202 of 220: libubsan1:amd64=16.1.0-1 Downloading dependency 203 of 220: debhelper:amd64=13.31 Downloading dependency 204 of 220: libbinutils:amd64=2.46-3 Downloading dependency 205 of 220: python3-sklearn:amd64=1.8.0+dfsg-4 Downloading dependency 206 of 220: python3-pkg-resources:amd64=78.1.1-0.1 Downloading dependency 207 of 220: sensible-utils:amd64=0.0.26 Downloading dependency 208 of 220: dpkg-dev:amd64=1.23.7 Downloading dependency 209 of 220: libjs-sphinxdoc:amd64=9.1.0-3 Downloading dependency 210 of 220: libisl23:amd64=0.27-2 Downloading dependency 211 of 220: libpipeline1:amd64=1.5.8-3 Downloading dependency 212 of 220: tar:amd64=1.35+dfsg-4 Downloading dependency 213 of 220: libuchardet0:amd64=0.0.8-2+b2 Downloading dependency 214 of 220: readline-common:amd64=8.3-4 Downloading dependency 215 of 220: file:amd64=1:5.46-5+b2 Downloading dependency 216 of 220: libmpc3:amd64=1.3.1-3 Downloading dependency 217 of 220: hostname:amd64=3.25 Downloading dependency 218 of 220: libsframe3:amd64=2.46-3 Downloading dependency 219 of 220: dwz:amd64=0.16-4 Downloading dependency 220 of 220: libpython3-dev:amd64=3.13.9-3+b1 env --chdir=/srv/rebuilderd/tmp/rebuilderdE4s68s/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1778749244 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildWWJ6HN/debrebuild.sbuildrc.reCuBwFSdQVX sbuild --build=amd64 --host=amd64 --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildWWJ6HN/debrebuild.tar.R7J7fKD4GYgT --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=macs-3.0.4 /srv/rebuilderd/tmp/rebuilderdE4s68s/inputs/macs_3.0.4-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl43-amd64.novalocal +==============================================================================+ | macs 3.0.4-1 (amd64) Tue, 19 May 2026 18:01:30 +0000 | +==============================================================================+ Package: macs Version: 3.0.4-1 Source Version: 3.0.4-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildWWJ6HN/debrebuild.tar.R7J7fKD4GYgT to /srv/rebuilderd/tmp/tmp.sbuild.TfyI3y52Og... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Tue, 19 May 2026 18:01:35 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdE4s68s/inputs/macs_3.0.4-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdE4s68s/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Tue, 19 May 2026 18:01:36 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-xj6QJt/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Tue, 19 May 2026 18:01:39 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Tue, 19 May 2026 18:01:39 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.88+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.88-1 (2026-05-15) amd64 (x86_64) Toolchain package versions: binutils_2.46-3 dpkg-dev_1.23.7 g++-15_15.2.0-17 gcc-15_15.2.0-17 libc6-dev_2.42-16 libstdc++-15-dev_15.2.0-17 libstdc++6_16.1.0-1 linux-libc-dev_7.0.4-1 Package versions: autoconf_2.72-6 automake_1:1.18.1-4 autopoint_0.23.2-2 autotools-dev_20240727.1+nmu1 base-files_14.0 base-passwd_3.6.8 bash_5.3-3 bc_1.07.1-4 binutils_2.46-3 binutils-common_2.46-3 binutils-x86-64-linux-gnu_2.46-3 bsdextrautils_2.42-6 build-essential_12.12 bzip2_1.0.8-6+b2 ca-certificates_20260223 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.2.0-17 cpp-15-x86-64-linux-gnu_15.2.0-17 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 cython3_3.1.6+dfsg-2+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_13.31 debianutils_5.23.2 dh-autoreconf_22 dh-python_7.20260309 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 file_1:5.46-5+b2 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.2.0-17 g++-15-x86-64-linux-gnu_15.2.0-17 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.2.0-17 gcc-15-base_15.2.0-17 gcc-15-x86-64-linux-gnu_15.2.0-17 gcc-16-base_16.1.0-1 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_0.23.2-2 gettext-base_0.23.2-2 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libarchive-zip-perl_1.68-1 libasan8_16.1.0-1 libatomic1_16.1.0-1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-3 libblas3_3.12.1-7+b2 libblkid1_2.42-6 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-16 libc-dev-bin_2.42-16 libc-gconv-modules-extra_2.42-16 libc6_2.42-16 libc6-dev_2.42-16 libcap-ng0_0.9.3-1 libcc1-0_16.1.0-1 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46-3 libctf0_2.46-3 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.282+b3 libdebhelper-perl_13.31 libdpkg-perl_1.23.7 libelf1t64_0.195-1 libexpat1_2.8.0-2 libexpat1-dev_2.8.0-2 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-17 libgcc-s1_16.1.0-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran5_16.1.0-1 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.1.0-1 libgprofng0_2.46-3 libhwasan0_16.1.0-1 libisl23_0.27-2 libitm1_16.1.0-1 libjansson4_2.14-2+b4 libjs-sphinxdoc_9.1.0-3 liblapack3_3.12.1-7+b2 liblocale-gettext-perl_1.07-9 liblsan0_16.1.0-1 liblzma5_5.8.3-1 libmagic-mgc_1:5.46-5+b2 libmagic1t64_1:5.46-5+b2 libmd0_1.2.0-1 libmount1_2.42-6 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20251231-1+b1 libpam-modules_1.7.0-5+b2 libpam-modules-bin_1.7.0-5+b2 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b2 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-7+b1 libpipeline1_1.5.8-3 libproc2-0_2:4.0.4-9+b2 libpython3-all-dev_3.13.9-3+b1 libpython3-dev_3.13.9-3+b1 libpython3-stdlib_3.13.9-3+b1 libpython3.13_3.13.12-1 libpython3.13-dev_3.13.12-1 libpython3.13-minimal_3.13.12-1 libpython3.13-stdlib_3.13.12-1 libpython3.14_3.14.5-1 libpython3.14-dev_3.14.5-1 libpython3.14-minimal_3.14.5-1 libpython3.14-stdlib_3.14.5-1 libqhull-r8.0_2020.2-9 libquadmath0_16.1.0-1 libreadline8t64_8.3-4 libseccomp2_2.6.0-2+b1 libselinux1_3.10-1 libsframe3_2.46-3 libsimde-dev_0.8.4~rc3-5 libsmartcols1_2.42-6 libsqlite3-0_3.46.1-9+b1 libssl3t64_3.6.2-1 libstdc++-15-dev_15.2.0-17 libstdc++6_16.1.0-1 libsystemd0_260.1-1 libtinfo6_6.6+20251231-1+b1 libtool_2.5.4-11 libtsan2_16.1.0-1 libubsan1_16.1.0-1 libuchardet0_0.0.8-2+b2 libudev1_260.1-1 libunistring5_1.4.2-1 libuuid1_2.42-6 libxml2-16_2.15.2+dfsg-0.1 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.0.4-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 media-types_14.0.0 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1+b1 netbase_6.5 openssl_3.6.2-1 openssl-provider-legacy_3.6.2-1 patch_2.8-2 perl_5.40.1-7+b1 perl-base_5.40.1-7+b1 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 procps_2:4.0.4-9+b2 pybuild-plugin-pyproject_7.20260309 python3_3.13.9-3+b1 python3-all_3.13.9-3+b1 python3-all-dev_3.13.9-3+b1 python3-autocommand_2.2.2-4 python3-build_1.4.0-1 python3-cykhash_2.0.0-3+b4 python3-decorator_5.2.1-2 python3-dev_3.13.9-3+b1 python3-hmmlearn_0.3.3-1 python3-inflect_7.5.0-1 python3-iniconfig_2.1.0-2 python3-installer_1.0.0+dfsg1-1 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-joblib_1.5.2-1 python3-minimal_3.13.9-3+b1 python3-more-itertools_10.8.0-1 python3-numpy_1:2.4.4+ds-2 python3-numpy-dev_1:2.4.4+ds-2 python3-packaging_26.0-1 python3-pip_26.0.1+dfsg-1 python3-pkg-resources_78.1.1-0.1 python3-pluggy_1.6.0-2 python3-pygments_2.19.2+dfsg-1 python3-pyproject-hooks_1.2.0-1 python3-pytest_9.0.3-1 python3-scipy_1.16.3-4 python3-setuptools_78.1.1-0.1 python3-sklearn_1.8.0+dfsg-4 python3-sklearn-lib_1.8.0+dfsg-4 python3-threadpoolctl_3.1.0-1 python3-typeguard_4.4.4-2 python3-typing-extensions_4.15.0-2 python3-wheel_0.47.0-1 python3-zipp_3.23.0-1 python3.13_3.13.12-1 python3.13-dev_3.13.12-1 python3.13-minimal_3.13.12-1 python3.14_3.14.5-1 python3.14-dev_3.14.5-1 python3.14-minimal_3.14.5-1 readline-common_8.3-4 rpcsvc-proto_1.4.3-1 sed_4.9-3 sensible-utils_0.0.26 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 tzdata_2026b-1 util-linux_2.42-6 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Tue, 19 May 2026 18:01:39 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 3.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev Package-List: macs deb science optional arch=any Checksums-Sha1: e6265ce4bf0e670ff5252543ebcf7474f2bd7c1d 200470087 macs_3.0.4.orig.tar.gz e972f9e6655fc8cbd8822c572639bea9ad87058a 1268072 macs_3.0.4-1.debian.tar.xz Checksums-Sha256: e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 200470087 macs_3.0.4.orig.tar.gz 3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f 1268072 macs_3.0.4-1.debian.tar.xz Files: 0328e6d35f0f06645732f6fa9d20eb4f 200470087 macs_3.0.4.orig.tar.gz 659176576e9d93e7a7313bbb6fe84c5c 1268072 macs_3.0.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmoFqbEACgkQPCZ2P2xn 5uJ37w//U+jjxj598TdT6Z/9whLbhcwgMZDmHd6351JqnTkNhbOcrcBXFCMt1RYQ F7VVpekJ1ZyNbCvV7Q5OqUsu2j/Zvl6zDBOjj3oR3ZM+oxu7nV49YPcmtkRCqp1B cyFz2cJHvJewsjQKcmELXitrNSEw4mrd3tzUBRGmU6AucQQgSIqV3glxQ08bq+rr Vw3THWPB+yFTSPP/xqGU5h3Z3hm+Bv13oikW01n5i3KO+HX/1CzuqzhL6rCl4yum pCWQ4XnokLo/WYTORs+0BFT2LVPscmoXg++ie/bpL2528ONHEsjKt02pkGWJZpPU Z05RNU7soUD9ziJ0QMOWNIo14hCUCjjxJbw3HSahjjiB5MI1eJElawpECZa2YZKv h34O46ftQsIPRp5RLzWGsk1IW/GzV33zu/0ZL7K0/3daPRkJRP+geC9nC7JfBINV rHGUCuEhVOKkajrBApp2K78SmbL3LJJmYrbTrnOlIAB5zFUOrIGbBpmIPNu/2nxy sT3DyJWi7FZKWogSBpMCvL7i72NsIs2+PGyqzBIcFboF+jK06mmq188RF/Q5Ax8D k691ldWKdmN4+8SMdSAgNWmkbyxKjus91/27lmTizXcgmJI8UOt2klN3lA+4mwqd iX9gLWUwwkigLh2UwyzhdOjsYMJpZWnGkZVfDI1y7aMvqfPkiRo= =4T3t -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./macs_3.0.4-1.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./macs_3.0.4-1.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting macs in /build/reproducible-path/macs-3.0.4 dpkg-source: info: unpacking macs_3.0.4.orig.tar.gz dpkg-source: info: unpacking macs_3.0.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying keep_debug dpkg-source: info: applying simde.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1778749244 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 3.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from /build/reproducible-path/macs-3.0.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' for pyx in $(find MACS3/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3 * Building wheel... warning: MACS3/Signal/PairedEndTrack.py:367:15: Unknown type declaration 'cnp.void' in annotation, ignoring warning: MACS3/Signal/PairedEndTrack.py:1611:15: Unknown type declaration 'cnp.void' in annotation, ignoring Compiling MACS3/Signal/HMMR_EM.py because it changed. Compiling MACS3/Signal/HMMR_Signal_Processing.py because it changed. Compiling MACS3/Signal/HMMR_HMM.py because it changed. Compiling MACS3/Signal/Prob.py because it changed. Compiling MACS3/Signal/Region.py because it changed. Compiling MACS3/Signal/Pileup.py because it changed. Compiling MACS3/Signal/PileupV2.py because it changed. Compiling MACS3/Signal/PeakModel.py because it changed. Compiling MACS3/Signal/PeakDetect.py because it changed. Compiling MACS3/Signal/SignalProcessing.py because it changed. Compiling MACS3/Signal/FixWidthTrack.py because it changed. Compiling MACS3/Signal/PairedEndTrack.py because it changed. Compiling MACS3/Signal/BedGraph.py because it changed. Compiling MACS3/Signal/ScoreTrack.py because it changed. Compiling MACS3/Signal/CallPeakUnit.py because it changed. Compiling MACS3/Signal/VariantStat.py because it changed. Compiling MACS3/Signal/ReadAlignment.py because it changed. Compiling MACS3/Signal/RACollection.py because it changed. Compiling MACS3/Signal/UnitigRACollection.py because it changed. Compiling MACS3/Signal/PosReadsInfo.py because it changed. Compiling MACS3/Signal/PeakVariants.py because it changed. Compiling MACS3/IO/Parser.py because it changed. Compiling MACS3/IO/PeakIO.py because it changed. Compiling MACS3/IO/BedGraphIO.py because it changed. Compiling MACS3/IO/BAM.py because it changed. [ 1/25] Cythonizing MACS3/IO/BAM.py [ 2/25] Cythonizing MACS3/IO/BedGraphIO.py [ 3/25] Cythonizing MACS3/IO/Parser.py [ 4/25] Cythonizing MACS3/IO/PeakIO.py [ 5/25] Cythonizing MACS3/Signal/BedGraph.py [ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.py [ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.py [ 8/25] Cythonizing MACS3/Signal/HMMR_EM.py [ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.py [10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.py [11/25] Cythonizing MACS3/Signal/PairedEndTrack.py [12/25] Cythonizing MACS3/Signal/PeakDetect.py [13/25] Cythonizing MACS3/Signal/PeakModel.py [14/25] Cythonizing MACS3/Signal/PeakVariants.py [15/25] Cythonizing MACS3/Signal/Pileup.py [16/25] Cythonizing MACS3/Signal/PileupV2.py [17/25] Cythonizing MACS3/Signal/PosReadsInfo.py [18/25] Cythonizing MACS3/Signal/Prob.py [19/25] Cythonizing MACS3/Signal/RACollection.py [20/25] Cythonizing MACS3/Signal/ReadAlignment.py [21/25] Cythonizing MACS3/Signal/Region.py [22/25] Cythonizing MACS3/Signal/ScoreTrack.py [23/25] Cythonizing MACS3/Signal/SignalProcessing.py [24/25] Cythonizing MACS3/Signal/UnitigRACollection.py [25/25] Cythonizing MACS3/Signal/VariantStat.py running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-314/MACS3 copying MACS3/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3 creating build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/BedGraphIO.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/PeakIO.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/BAM.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO copying MACS3/IO/Parser.py -> build/lib.linux-x86_64-cpython-314/MACS3/IO creating build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakModel.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/PileupV2.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/PairedEndTrack.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/RACollection.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/ReadAlignment.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/Region.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/SignalProcessing.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/VariantStat.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/UnitigRACollection.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/BedGraph.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/CallPeakUnit.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/ScoreTrack.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/Prob.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/Pileup.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/FixWidthTrack.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_HMM.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakVariants.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_Signal_Processing.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_EM.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/PosReadsInfo.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakDetect.py -> build/lib.linux-x86_64-cpython-314/MACS3/Signal creating build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-x86_64-cpython-314/MACS3/Commands creating build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-314/MACS3/Utilities running egg_info creating MACS3.egg-info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt writing manifest file 'MACS3.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no files found matching '*.pyx' under directory 'MACS3' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' creating build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bfc.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bseq.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bubble.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/example.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/fml.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/htab.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/htab.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/internal.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/khash.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kmer.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kseq.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksort.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kstring.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kthread.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kvec.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mag.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mag.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/misc.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rle.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rle.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rope.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rope.h -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/unitig.c -> build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite copying MACS3/Signal/RACollection.pxd -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.c -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.h -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.pxd -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/swalign.c -> build/lib.linux-x86_64-cpython-314/MACS3/Signal copying MACS3/Signal/swalign.h -> build/lib.linux-x86_64-cpython-314/MACS3/Signal running build_ext building 'MACS3.Signal.HMMR_EM' extension building 'MACS3.Signal.HMMR_Signal_Processing' extension creating build/temp.linux-x86_64-cpython-314/MACS3/Signal building 'MACS3.Signal.HMMR_HMM' extension creating build/temp.linux-x86_64-cpython-314/MACS3/Signal building 'MACS3.Signal.Prob' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.o -w -O3 creating build/temp.linux-x86_64-cpython-314/MACS3/Signal building 'MACS3.Signal.Region' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/Region.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Region.o -w -O3 building 'MACS3.Signal.Pileup' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Prob.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Prob.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Pileup.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/Pileup.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PileupV2' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PileupV2.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakModel' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PeakModel.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Prob.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Region.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/Pileup.o build/temp.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.BedGraph' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/BedGraph.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/VariantStat.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/RACollection.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-x86_64-cpython-314/MACS3/IO x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/Parser.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/Parser.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/swalign.c -o build/temp.linux-x86_64-cpython-314/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/htab.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP building 'MACS3.IO.PeakIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/PeakIO.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/PeakIO.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mag.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/misc.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rle.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so building 'MACS3.IO.BAM' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/BAM.c -o build/temp.linux-x86_64-cpython-314/MACS3/IO/BAM.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rope.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/RACollection.o build/temp.linux-x86_64-cpython-314/MACS3/Signal/swalign.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bfc.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bseq.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/bubble.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/htab.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/ksw.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/kthread.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mag.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/misc.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/mrope.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rld0.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rle.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/rope.o build/temp.linux-x86_64-cpython-314/MACS3/fermi-lite/unitig.o -L/usr/lib/x86_64-linux-gnu -lm -lz -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/BAM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-314/MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/Parser.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/MACS3/IO/PeakIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.14 copying and adjusting bin/macs3 -> build/scripts-3.14 changing mode of build/scripts-3.14/macs3 from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/kvec.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/ksw.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/bubble.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/bfc.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/kseq.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/bseq.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/mag.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/misc.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/mrope.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/rope.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/ksw.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/internal.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/htab.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/kstring.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/kmer.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/mag.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/ksort.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/htab.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/kthread.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/example.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/rld0.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/fml.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/mrope.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/rld0.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/khash.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/rope.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/unitig.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/rle.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/fermi-lite/rle.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-314/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/PeakIO.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/BAM.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/Parser.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO creating build/bdist.linux-x86_64/wheel/MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-314/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities creating build/bdist.linux-x86_64/wheel/MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-314/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands creating build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/RACollection.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/swalign.c -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.pxd -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/ReadAlignment.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Region.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/SignalProcessing.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/BedGraph.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.h -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/CallPeakUnit.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/swalign.h -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/ScoreTrack.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Prob.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/cPosValCalculation.c -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Pileup.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/RACollection.pxd -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakVariants.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_EM.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PosReadsInfo.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-314/MACS3/Signal/PeakDetect.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal running install_egg_info Copying MACS3.egg-info to build/bdist.linux-x86_64/wheel/./MACS3-3.0.4.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/macs3-3.0.4.data/scripts copying build/scripts-3.14/macs3 -> build/bdist.linux-x86_64/wheel/macs3-3.0.4.data/scripts changing mode of build/bdist.linux-x86_64/wheel/macs3-3.0.4.data/scripts/macs3 to 755 creating build/bdist.linux-x86_64/wheel/macs3-3.0.4.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/.tmp-ncdfs7f8/macs3-3.0.4-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/BAM.py' adding 'MACS3/IO/BedGraphIO.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.py' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/Parser.py' adding 'MACS3/IO/PeakIO.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/IO/PeakIO.py' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/BedGraph.py' adding 'MACS3/Signal/CallPeakUnit.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.py' adding 'MACS3/Signal/FixWidthTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.py' adding 'MACS3/Signal/HMMR_EM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.py' adding 'MACS3/Signal/HMMR_HMM.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.py' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.py' adding 'MACS3/Signal/PairedEndTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.py' adding 'MACS3/Signal/PeakDetect.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.py' adding 'MACS3/Signal/PeakModel.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.py' adding 'MACS3/Signal/PeakVariants.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.py' adding 'MACS3/Signal/Pileup.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Pileup.py' adding 'MACS3/Signal/PileupV2.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.py' adding 'MACS3/Signal/PosReadsInfo.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.py' adding 'MACS3/Signal/Prob.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Prob.py' adding 'MACS3/Signal/RACollection.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/RACollection.pxd' adding 'MACS3/Signal/RACollection.py' adding 'MACS3/Signal/ReadAlignment.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.py' adding 'MACS3/Signal/Region.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/Region.py' adding 'MACS3/Signal/ScoreTrack.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.py' adding 'MACS3/Signal/SignalProcessing.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.py' adding 'MACS3/Signal/UnitigRACollection.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.py' adding 'MACS3/Signal/VariantStat.cpython-314-x86_64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.py' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Signal/cPosValCalculation.c' adding 'MACS3/Signal/cPosValCalculation.h' adding 'MACS3/Signal/cPosValCalculation.pxd' adding 'MACS3/Signal/swalign.c' adding 'MACS3/Signal/swalign.h' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'MACS3/fermi-lite/bfc.c' adding 'MACS3/fermi-lite/bseq.c' adding 'MACS3/fermi-lite/bubble.c' adding 'MACS3/fermi-lite/example.c' adding 'MACS3/fermi-lite/fml.h' adding 'MACS3/fermi-lite/htab.c' adding 'MACS3/fermi-lite/htab.h' adding 'MACS3/fermi-lite/internal.h' adding 'MACS3/fermi-lite/khash.h' adding 'MACS3/fermi-lite/kmer.h' adding 'MACS3/fermi-lite/kseq.h' adding 'MACS3/fermi-lite/ksort.h' adding 'MACS3/fermi-lite/kstring.h' adding 'MACS3/fermi-lite/ksw.c' adding 'MACS3/fermi-lite/ksw.h' adding 'MACS3/fermi-lite/kthread.c' adding 'MACS3/fermi-lite/kvec.h' adding 'MACS3/fermi-lite/mag.c' adding 'MACS3/fermi-lite/mag.h' adding 'MACS3/fermi-lite/misc.c' adding 'MACS3/fermi-lite/mrope.c' adding 'MACS3/fermi-lite/mrope.h' adding 'MACS3/fermi-lite/rld0.c' adding 'MACS3/fermi-lite/rld0.h' adding 'MACS3/fermi-lite/rle.c' adding 'MACS3/fermi-lite/rle.h' adding 'MACS3/fermi-lite/rope.c' adding 'MACS3/fermi-lite/rope.h' adding 'MACS3/fermi-lite/unitig.c' adding 'macs3-3.0.4.data/scripts/macs3' adding 'macs3-3.0.4.dist-info/licenses/LICENSE' adding 'macs3-3.0.4.dist-info/METADATA' adding 'macs3-3.0.4.dist-info/WHEEL' adding 'macs3-3.0.4.dist-info/top_level.txt' adding 'macs3-3.0.4.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built macs3-3.0.4-cp314-cp314-linux_x86_64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module I: pybuild plugin_pyproject:142: Building wheel for python3.13 with "build" module I: pybuild base:385: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3 * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/MACS3 copying MACS3/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3 creating build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/BedGraphIO.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/PeakIO.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/BAM.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO copying MACS3/IO/Parser.py -> build/lib.linux-x86_64-cpython-313/MACS3/IO creating build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakModel.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/PileupV2.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/PairedEndTrack.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/RACollection.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/ReadAlignment.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/Region.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/SignalProcessing.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/VariantStat.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/UnitigRACollection.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/BedGraph.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/CallPeakUnit.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/ScoreTrack.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/Prob.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/Pileup.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/FixWidthTrack.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_HMM.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakVariants.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_Signal_Processing.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_EM.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/PosReadsInfo.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakDetect.py -> build/lib.linux-x86_64-cpython-313/MACS3/Signal creating build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-x86_64-cpython-313/MACS3/Commands creating build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-313/MACS3/Utilities running egg_info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no files found matching '*.pyx' under directory 'MACS3' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' creating build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bfc.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bseq.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bubble.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/example.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/fml.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/htab.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/htab.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/internal.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/khash.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kmer.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kseq.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksort.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kstring.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kthread.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kvec.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mag.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mag.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/misc.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rle.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rle.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rope.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rope.h -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/unitig.c -> build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite copying MACS3/Signal/RACollection.pxd -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.c -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.h -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.pxd -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/swalign.c -> build/lib.linux-x86_64-cpython-313/MACS3/Signal copying MACS3/Signal/swalign.h -> build/lib.linux-x86_64-cpython-313/MACS3/Signal running build_ext building 'MACS3.Signal.HMMR_EM' extension building 'MACS3.Signal.HMMR_Signal_Processing' extension building 'MACS3.Signal.HMMR_HMM' extension creating build/temp.linux-x86_64-cpython-313/MACS3/Signal building 'MACS3.Signal.Prob' extension creating build/temp.linux-x86_64-cpython-313/MACS3/Signal creating build/temp.linux-x86_64-cpython-313/MACS3/Signal creating build/temp.linux-x86_64-cpython-313/MACS3/Signal x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Prob.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Prob.o -w -O3 building 'MACS3.Signal.Region' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/Region.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Region.o -w -O3 building 'MACS3.Signal.Pileup' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Pileup.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/Pileup.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PileupV2' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PileupV2.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakModel' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakModel.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Pileup.o build/temp.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Region.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/Prob.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.BedGraph' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/BedGraph.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/VariantStat.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/RACollection.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/swalign.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-x86_64-cpython-313/MACS3/IO x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/Parser.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/Parser.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/htab.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mag.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP building 'MACS3.IO.PeakIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/PeakIO.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/PeakIO.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/misc.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rle.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.o -w -O3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rope.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/RACollection.o build/temp.linux-x86_64-cpython-313/MACS3/Signal/swalign.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bfc.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bseq.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/bubble.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/htab.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/ksw.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/kthread.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mag.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/misc.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/mrope.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rld0.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rle.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/rope.o build/temp.linux-x86_64-cpython-313/MACS3/fermi-lite/unitig.o -L/usr/lib/x86_64-linux-gnu -lm -lz -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so building 'MACS3.IO.BAM' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BAM.c -o build/temp.linux-x86_64-cpython-313/MACS3/IO/BAM.o -w -O3 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/BAM.o -L/usr/lib/x86_64-linux-gnu -lm -o build/lib.linux-x86_64-cpython-313/MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/Parser.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/MACS3/IO/PeakIO.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting bin/macs3 -> build/scripts-3.13 changing mode of build/scripts-3.13/macs3 from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/kvec.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/ksw.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/bubble.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/bfc.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/kseq.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/bseq.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/mag.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/misc.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/mrope.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/rope.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/ksw.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/internal.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/htab.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/kstring.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/kmer.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/mag.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/ksort.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/htab.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/kthread.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/example.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/rld0.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/fml.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/mrope.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/rld0.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/khash.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/rope.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/unitig.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/rle.h -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/fermi-lite/rle.c -> build/bdist.linux-x86_64/wheel/./MACS3/fermi-lite copying build/lib.linux-x86_64-cpython-313/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/PeakIO.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/BAM.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/Parser.py -> build/bdist.linux-x86_64/wheel/./MACS3/IO copying build/lib.linux-x86_64-cpython-313/MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/IO creating build/bdist.linux-x86_64/wheel/MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities copying build/lib.linux-x86_64-cpython-313/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/./MACS3/Utilities creating build/bdist.linux-x86_64/wheel/MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands copying build/lib.linux-x86_64-cpython-313/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/./MACS3/Commands creating build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/RACollection.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/swalign.c -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.pxd -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Region.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.h -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/swalign.h -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/ScoreTrack.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Prob.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/cPosValCalculation.c -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/Pileup.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/RACollection.pxd -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/FixWidthTrack.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_HMM.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/HMMR_EM.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PosReadsInfo.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakDetect.py -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal copying build/lib.linux-x86_64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MACS3/Signal running install_egg_info Copying MACS3.egg-info to build/bdist.linux-x86_64/wheel/./MACS3-3.0.4.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/macs3-3.0.4.data/scripts copying build/scripts-3.13/macs3 -> build/bdist.linux-x86_64/wheel/macs3-3.0.4.data/scripts changing mode of build/bdist.linux-x86_64/wheel/macs3-3.0.4.data/scripts/macs3 to 755 creating build/bdist.linux-x86_64/wheel/macs3-3.0.4.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/.tmp-p70rwl7p/macs3-3.0.4-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/BAM.py' adding 'MACS3/IO/BedGraphIO.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.py' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/Parser.py' adding 'MACS3/IO/PeakIO.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/IO/PeakIO.py' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/BedGraph.py' adding 'MACS3/Signal/CallPeakUnit.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.py' adding 'MACS3/Signal/FixWidthTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.py' adding 'MACS3/Signal/HMMR_EM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.py' adding 'MACS3/Signal/HMMR_HMM.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.py' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.py' adding 'MACS3/Signal/PairedEndTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.py' adding 'MACS3/Signal/PeakDetect.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.py' adding 'MACS3/Signal/PeakModel.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.py' adding 'MACS3/Signal/PeakVariants.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.py' adding 'MACS3/Signal/Pileup.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Pileup.py' adding 'MACS3/Signal/PileupV2.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.py' adding 'MACS3/Signal/PosReadsInfo.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.py' adding 'MACS3/Signal/Prob.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Prob.py' adding 'MACS3/Signal/RACollection.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/RACollection.pxd' adding 'MACS3/Signal/RACollection.py' adding 'MACS3/Signal/ReadAlignment.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.py' adding 'MACS3/Signal/Region.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/Region.py' adding 'MACS3/Signal/ScoreTrack.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.py' adding 'MACS3/Signal/SignalProcessing.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.py' adding 'MACS3/Signal/UnitigRACollection.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.py' adding 'MACS3/Signal/VariantStat.cpython-313-x86_64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.py' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Signal/cPosValCalculation.c' adding 'MACS3/Signal/cPosValCalculation.h' adding 'MACS3/Signal/cPosValCalculation.pxd' adding 'MACS3/Signal/swalign.c' adding 'MACS3/Signal/swalign.h' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'MACS3/fermi-lite/bfc.c' adding 'MACS3/fermi-lite/bseq.c' adding 'MACS3/fermi-lite/bubble.c' adding 'MACS3/fermi-lite/example.c' adding 'MACS3/fermi-lite/fml.h' adding 'MACS3/fermi-lite/htab.c' adding 'MACS3/fermi-lite/htab.h' adding 'MACS3/fermi-lite/internal.h' adding 'MACS3/fermi-lite/khash.h' adding 'MACS3/fermi-lite/kmer.h' adding 'MACS3/fermi-lite/kseq.h' adding 'MACS3/fermi-lite/ksort.h' adding 'MACS3/fermi-lite/kstring.h' adding 'MACS3/fermi-lite/ksw.c' adding 'MACS3/fermi-lite/ksw.h' adding 'MACS3/fermi-lite/kthread.c' adding 'MACS3/fermi-lite/kvec.h' adding 'MACS3/fermi-lite/mag.c' adding 'MACS3/fermi-lite/mag.h' adding 'MACS3/fermi-lite/misc.c' adding 'MACS3/fermi-lite/mrope.c' adding 'MACS3/fermi-lite/mrope.h' adding 'MACS3/fermi-lite/rld0.c' adding 'MACS3/fermi-lite/rld0.h' adding 'MACS3/fermi-lite/rle.c' adding 'MACS3/fermi-lite/rle.h' adding 'MACS3/fermi-lite/rope.c' adding 'MACS3/fermi-lite/rope.h' adding 'MACS3/fermi-lite/unitig.c' adding 'macs3-3.0.4.data/scripts/macs3' adding 'macs3-3.0.4.dist-info/licenses/LICENSE' adding 'macs3-3.0.4.dist-info/METADATA' adding 'macs3-3.0.4.dist-info/WHEEL' adding 'macs3-3.0.4.dist-info/top_level.txt' adding 'macs3-3.0.4.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built macs3-3.0.4-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.13 with "installer" module PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info \ --name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs3_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info --version-string="3.0.4" \ --include debian/macs3_${subcommand}-man-include \ "python3 bin/macs3 ${subcommand}" > \ debian/macs3_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' dh_auto_test I: pybuild base:385: cd /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build; python3.14 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.14.5, pytest-9.0.3, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 93 items test/test_BAMBAI.py ........... [ 11%] test/test_BedGraph.py .. [ 13%] test/test_BedGraphIO.py .. [ 16%] test/test_CallPeakUnit.py ....s [ 21%] test/test_FixWidthTrack.py .... [ 25%] test/test_HMMR_HMM.py s. [ 27%] test/test_HMMR_poisson.py .. [ 30%] test/test_PairedEndTrack.py ................ [ 47%] test/test_Parser.py .... [ 51%] test/test_PeakDetect.py ... [ 54%] test/test_PeakIO.py . [ 55%] test/test_PeakModel.py .ss [ 59%] test/test_Pileup.py .......... [ 69%] test/test_Prob.py ................ [ 87%] test/test_Region.py ..... [ 92%] test/test_ScoreTrack.py .... [ 96%] test/test_SignalProcessing.py .. [ 98%] test/test_online.py . [100%] ======================== 89 passed, 4 skipped in 20.83s ======================== I: pybuild base:385: cd /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/build; python3.13 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.13.12, pytest-9.0.3, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 93 items test/test_BAMBAI.py ........... [ 11%] test/test_BedGraph.py .. [ 13%] test/test_BedGraphIO.py .. [ 16%] test/test_CallPeakUnit.py ....s [ 21%] test/test_FixWidthTrack.py .... [ 25%] test/test_HMMR_HMM.py s. [ 27%] test/test_HMMR_poisson.py .. [ 30%] test/test_PairedEndTrack.py ................ [ 47%] test/test_Parser.py .... [ 51%] test/test_PeakDetect.py ... [ 54%] test/test_PeakIO.py . [ 55%] test/test_PeakModel.py .ss [ 59%] test/test_Pileup.py .......... [ 69%] test/test_Prob.py ................ [ 87%] test/test_Region.py ..... [ 92%] test/test_ScoreTrack.py .... [ 96%] test/test_SignalProcessing.py .. [ 98%] test/test_online.py . [100%] ======================== 89 passed, 4 skipped in 20.98s ======================== cd test && for PY3VER in 3.14 3.13; do \ export PATH=/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_${PY3VER}_MACS3/scripts:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_${PY3VER}_MACS3/build \ && ./cmdlinetest macs3.0.4-1-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 1.4 callpeak with fragment file w/ or w/o barcodes file 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 15.2 hmmratac load hmm model file 15.3 hmmratac scATAC test 16. search for errors in log files checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_barcode.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_scatac.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking callpeak_frag run_callpeak_frag_barcode_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak ... success! Results are the same! 16.11.2 checking callpeak_frag run_callpeak_frag_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_peaks.narrowPeak ... success! Results are the same! 16.12.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.12.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.12.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.13.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.13.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.14.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.14.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.14.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.14.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.14.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.14.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.15.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.15.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.16.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.16.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.17.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.17.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.17.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.18.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.4-1-3.14_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.19.1 checking hmmratac hmmratac_scatac_test_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak ... success! Results are the same! 16.19.2 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.3 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.4 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.5 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.6 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.7 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.8 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.9 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 1.4 callpeak with fragment file w/ or w/o barcodes file 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 15.2 hmmratac load hmm model file 15.3 hmmratac scATAC test 16. search for errors in log files checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_barcode.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_scatac.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking callpeak_frag run_callpeak_frag_barcode_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak ... success! Results are the same! 16.11.2 checking callpeak_frag run_callpeak_frag_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_peaks.narrowPeak ... success! Results are the same! 16.12.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.12.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.12.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.13.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.13.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.14.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.14.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.14.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.14.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.14.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.14.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.15.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.15.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.16.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.16.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.17.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.17.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.17.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.18.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.4-1-3.13_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.19.1 checking hmmratac hmmratac_scatac_test_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak ... success! Results are the same! 16.19.2 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.3 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.4 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.5 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.6 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.7 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.8 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.9 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 18. brief speed test CPU time (mm:ss): 00:01:24 Max mem (KB): 252388 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir I: pybuild plugin_pyproject:199: Copying package built for python3.13 to destdir dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' dh_python3 -a -O--buildsystem=pybuild I: dh_python3 tools:128: replacing shebang in debian/macs/usr/bin/macs3 dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_3.0.4-1_amd64.deb'. dpkg-deb: building package 'macs' in '../macs_3.0.4-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../macs_3.0.4-1_amd64.buildinfo dpkg-genchanges --build=any -O../macs_3.0.4-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from /build/reproducible-path/macs-3.0.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-05-19T18:19:23Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Tue, 19 May 2026 18:19:24 +0000 | +------------------------------------------------------------------------------+ macs_3.0.4-1_amd64.changes: --------------------------- Format: 1.8 Date: Thu, 14 May 2026 11:00:44 +0200 Source: macs Binary: macs macs-dbgsym Architecture: amd64 Version: 3.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Changes: macs (3.0.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.7.4 (routine-update) * debputy lint --auto-fix (routine-update) * Refreshed patches, dropping one that is no longer applicable. * Add missing build dependency on python3-numpy-dev for command dh_numpy3. * Set upstream metadata fields: Documentation, Repository, Repository-Browse. * d/copyright: clarify with files are expat licensed Checksums-Sha1: d301835110b1425859915cfadc533fb4aa296105 26778360 macs-dbgsym_3.0.4-1_amd64.deb 3334d193130066062226327f82c63a6afc9a8db4 7243 macs_3.0.4-1_amd64.buildinfo 7c5d749b67daf373e96bffd1dc8e7c253ca03ad5 4538728 macs_3.0.4-1_amd64.deb Checksums-Sha256: 54248e17097d7b9a474953b24c0d9fac16300a70ea62b4f05e8ffca916d711be 26778360 macs-dbgsym_3.0.4-1_amd64.deb 5dc2a78c8627e0c01626567513458eae5f10187add85739d7e438338f8c27eeb 7243 macs_3.0.4-1_amd64.buildinfo 4dabbd4df7128989fe9bac01ff696447e64d2db6dea0b12b0dd8e594bea4452a 4538728 macs_3.0.4-1_amd64.deb Files: 453f79efc93db351efac3aba992def70 26778360 debug optional macs-dbgsym_3.0.4-1_amd64.deb 052552ef2114090032da0fed63ff080f 7243 science optional macs_3.0.4-1_amd64.buildinfo 362b228799d3a26dfddd1fb9171db8a4 4538728 science optional macs_3.0.4-1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Tue, 19 May 2026 18:19:25 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: macs Binary: macs macs-dbgsym Architecture: amd64 Version: 3.0.4-1 Checksums-Md5: 453f79efc93db351efac3aba992def70 26778360 macs-dbgsym_3.0.4-1_amd64.deb 362b228799d3a26dfddd1fb9171db8a4 4538728 macs_3.0.4-1_amd64.deb Checksums-Sha1: d301835110b1425859915cfadc533fb4aa296105 26778360 macs-dbgsym_3.0.4-1_amd64.deb 7c5d749b67daf373e96bffd1dc8e7c253ca03ad5 4538728 macs_3.0.4-1_amd64.deb Checksums-Sha256: 54248e17097d7b9a474953b24c0d9fac16300a70ea62b4f05e8ffca916d711be 26778360 macs-dbgsym_3.0.4-1_amd64.deb 4dabbd4df7128989fe9bac01ff696447e64d2db6dea0b12b0dd8e594bea4452a 4538728 macs_3.0.4-1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 19 May 2026 18:19:23 +0000 Build-Path: /build/reproducible-path/macs-3.0.4 Installed-Build-Depends: autoconf (= 2.72-6), automake (= 1:1.18.1-4), autopoint (= 0.23.2-2), autotools-dev (= 20240727.1+nmu1), base-files (= 14.0), base-passwd (= 3.6.8), bash (= 5.3-3), bc (= 1.07.1-4), binutils (= 2.46-3), binutils-common (= 2.46-3), binutils-x86-64-linux-gnu (= 2.46-3), bsdextrautils (= 2.42-6), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260223), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.2.0-17), cpp-15-x86-64-linux-gnu (= 15.2.0-17), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), cython3 (= 3.1.6+dfsg-2+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-python (= 7.20260309), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.46-5+b2), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.2.0-17), g++-15-x86-64-linux-gnu (= 15.2.0-17), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.2.0-17), gcc-15-base (= 15.2.0-17), gcc-15-x86-64-linux-gnu (= 15.2.0-17), gcc-16-base (= 16.1.0-1), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 0.23.2-2), gettext-base (= 0.23.2-2), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), help2man (= 1.49.3), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-1), libatomic1 (= 16.1.0-1), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-3), libblas3 (= 3.12.1-7+b2), libblkid1 (= 2.42-6), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-16), libc-dev-bin (= 2.42-16), libc-gconv-modules-extra (= 2.42-16), libc6 (= 2.42-16), libc6-dev (= 2.42-16), libcap-ng0 (= 0.9.3-1), libcc1-0 (= 16.1.0-1), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46-3), libctf0 (= 2.46-3), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.282+b3), libdebhelper-perl (= 13.31), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libexpat1 (= 2.8.0-2), libexpat1-dev (= 2.8.0-2), libffi8 (= 3.5.2-4), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-17), libgcc-s1 (= 16.1.0-1), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran5 (= 16.1.0-1), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-1), libgprofng0 (= 2.46-3), libhwasan0 (= 16.1.0-1), libisl23 (= 0.27-2), libitm1 (= 16.1.0-1), libjansson4 (= 2.14-2+b4), libjs-sphinxdoc (= 9.1.0-3), liblapack3 (= 3.12.1-7+b2), liblocale-gettext-perl (= 1.07-9), liblsan0 (= 16.1.0-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.46-5+b2), libmagic1t64 (= 1:5.46-5+b2), libmd0 (= 1.2.0-1), libmount1 (= 2.42-6), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20251231-1+b1), libpam-modules (= 1.7.0-5+b2), libpam-modules-bin (= 1.7.0-5+b2), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b2), libpcre2-8-0 (= 10.46-1+b2), libperl5.40 (= 5.40.1-7+b1), libpipeline1 (= 1.5.8-3), libproc2-0 (= 2:4.0.4-9+b2), libpython3-all-dev (= 3.13.9-3+b1), libpython3-dev (= 3.13.9-3+b1), libpython3-stdlib (= 3.13.9-3+b1), libpython3.13 (= 3.13.12-1), libpython3.13-dev (= 3.13.12-1), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libpython3.14 (= 3.14.5-1), libpython3.14-dev (= 3.14.5-1), libpython3.14-minimal (= 3.14.5-1), libpython3.14-stdlib (= 3.14.5-1), libqhull-r8.0 (= 2020.2-9), libquadmath0 (= 16.1.0-1), libreadline8t64 (= 8.3-4), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.10-1), libsframe3 (= 2.46-3), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.42-6), libsqlite3-0 (= 3.46.1-9+b1), libssl3t64 (= 3.6.2-1), libstdc++-15-dev (= 15.2.0-17), libstdc++6 (= 16.1.0-1), libsystemd0 (= 260.1-1), libtinfo6 (= 6.6+20251231-1+b1), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-1), libubsan1 (= 16.1.0-1), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 260.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42-6), libxml2-16 (= 2.15.2+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.0.4-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1+b1), netbase (= 6.5), openssl (= 3.6.2-1), openssl-provider-legacy (= 3.6.2-1), patch (= 2.8-2), perl (= 5.40.1-7+b1), perl-base (= 5.40.1-7+b1), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b2), pybuild-plugin-pyproject (= 7.20260309), python3 (= 3.13.9-3+b1), python3-all (= 3.13.9-3+b1), python3-all-dev (= 3.13.9-3+b1), python3-autocommand (= 2.2.2-4), python3-build (= 1.4.0-1), python3-cykhash (= 2.0.0-3+b4), python3-decorator (= 5.2.1-2), python3-dev (= 3.13.9-3+b1), python3-hmmlearn (= 0.3.3-1), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-2), python3-installer (= 1.0.0+dfsg1-1), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-joblib (= 1.5.2-1), python3-minimal (= 3.13.9-3+b1), python3-more-itertools (= 10.8.0-1), python3-numpy (= 1:2.4.4+ds-2), python3-numpy-dev (= 1:2.4.4+ds-2), python3-packaging (= 26.0-1), python3-pip (= 26.0.1+dfsg-1), python3-pkg-resources (= 78.1.1-0.1), python3-pluggy (= 1.6.0-2), python3-pygments (= 2.19.2+dfsg-1), python3-pyproject-hooks (= 1.2.0-1), python3-pytest (= 9.0.3-1), python3-scipy (= 1.16.3-4), python3-setuptools (= 78.1.1-0.1), python3-sklearn (= 1.8.0+dfsg-4), python3-sklearn-lib (= 1.8.0+dfsg-4), python3-threadpoolctl (= 3.1.0-1), python3-typeguard (= 4.4.4-2), python3-typing-extensions (= 4.15.0-2), python3-wheel (= 0.47.0-1), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.12-1), python3.13-dev (= 3.13.12-1), python3.13-minimal (= 3.13.12-1), python3.14 (= 3.14.5-1), python3.14-dev (= 3.14.5-1), python3.14-minimal (= 3.14.5-1), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), tzdata (= 2026b-1), util-linux (= 2.42-6), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1778749244" +------------------------------------------------------------------------------+ | Package contents Tue, 19 May 2026 18:19:25 +0000 | +------------------------------------------------------------------------------+ macs-dbgsym_3.0.4-1_amd64.deb ----------------------------- new Debian package, version 2.0. size 26778360 bytes: control archive=2852 bytes. 2369 bytes, 12 lines control 5381 bytes, 51 lines md5sums Package: macs-dbgsym Source: macs Version: 3.0.4-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 28013 Depends: macs (= 3.0.4-1) Section: debug Priority: optional Description: debug symbols for macs Build-Ids: 05789bf503a311f1d947358d8a81dd2c9371a419 06584a52a89d8f2213cb3b0656d8b64280e4d727 0d05a99061f26c456973a59e0f8c911c5f349475 14f3ab16a52db9dc8b50bc7f2ebb5cccbb13517d 177c5260e21fadcab4f65b432bad856380f4d1bb 17f3bcd39d3d13871489d3540c1dcff192a16935 238030752fc179d6a6afc275b658fc32c7b2e1cf 284c6a1f532e45680f9129d7d8252af852387928 2dcb42b30c77a014e729a0d3a7e704f925bb5fc4 30caa7cc2a7e6dfed77f33382ec0c11040995555 37e6b5fde9accfa68453091ac634c244b36108e1 4289c71dd990299727237cc440f40b745ceefca6 465f2cd1bda13a6a66dfed36bf6dd1661066ded8 4b2d35854c64ea18c84b301b8ae93d544122aeda 589a42d7cfd0d104855d4d13373b7ed8a7ba29d0 5ebe952aef16d4a17934d6d6602a7cc0ced50297 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Priority: optional Homepage: https://github.com/taoliu/MACS/ Description: Model-based Analysis of ChIP-Seq on short reads sequencers MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples. drwxr-xr-x root/root 0 2026-05-14 09:00 ./ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/bin/ -rwxr-xr-x root/root 99907 2026-05-14 09:00 ./usr/bin/macs3 drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/ -rw-r--r-- root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/__init__.py -rw-r--r-- root/root 1848 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/bdgbroadcall_cmd.py -rw-r--r-- root/root 3384 2026-05-14 09:00 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root/root 1359 2026-05-14 09:00 ./usr/share/man/man1/macs3_refinepeak.1.gz +------------------------------------------------------------------------------+ | Post Build Tue, 19 May 2026 18:19:26 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Tue, 19 May 2026 18:19:26 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Tue, 19 May 2026 18:19:28 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 2337088 Build-Time: 1059 Distribution: unstable Host Architecture: amd64 Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdE4s68s/inputs/macs_3.0.4-1.dsc Machine Architecture: amd64 Package: macs Package-Time: 1073 Source-Version: 3.0.4-1 Space: 2337088 Status: successful Version: 3.0.4-1 -------------------------------------------------------------------------------- Finished at 2026-05-19T18:19:23Z Build needed 00:17:53, 2337088k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdE4s68s/out checking macs-dbgsym_3.0.4-1_amd64.deb: size differs for macs-dbgsym_3.0.4-1_amd64.deb