=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdBhctHn/inputs/mdtraj_1.11.1.post1-3+b1_amd64.buildinfo Source: mdtraj Version: 1.11.1.post1-3 rebuilderd-worker node: osuosl44-amd64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 11 Sep 2026 07:13:24 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [60.7 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [229 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [1,840 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [219 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [307 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,412 B] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,876 B] Get:18 https://deb.debian.org/debian forky/main Sources [11.2 MB] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [10.6 kB] Get:20 https://deb.debian.org/debian sid/main Sources [11.9 MB] Get:21 https://deb.debian.org/debian experimental/main Sources [429 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Fetched 35.6 MB in 4s (9,228 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.1.post1-3.dsc' mdtraj_1.11.1.post1-3.dsc 2914 SHA256:804fa5bde050873d69e69ffc25f8f2f84c67fab5b9421b358ab8b8f2b7c5b0a2 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.1.post1.orig.tar.gz' mdtraj_1.11.1.post1.orig.tar.gz 22729550 SHA256:8a46153ba6102b851639bc61ab6db5387b4c5d5b46d09a72a519e845b3c1f390 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.1.post1-3.debian.tar.xz' mdtraj_1.11.1.post1-3.debian.tar.xz 301808 SHA256:5379a71153de26c9329136774ae225ba9e1a70ced7e3192397733087177ef578 8a46153ba6102b851639bc61ab6db5387b4c5d5b46d09a72a519e845b3c1f390 mdtraj_1.11.1.post1.orig.tar.gz 5379a71153de26c9329136774ae225ba9e1a70ced7e3192397733087177ef578 mdtraj_1.11.1.post1-3.debian.tar.xz 804fa5bde050873d69e69ffc25f8f2f84c67fab5b9421b358ab8b8f2b7c5b0a2 mdtraj_1.11.1.post1-3.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 11 Sep 2026 07:13:29 +0000 | +------------------------------------------------------------------------------+ Rebuilding mdtraj=1.11.1.post1-3 in /srv/rebuilderd/tmp/rebuilderdBhctHn/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdBhctHn/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdBhctHn/inputs/mdtraj_1.11.1.post1-3+b1_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdBhctHn/inputs/mdtraj_1.11.1.post1-3+b1_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mdtraj-1.11.1.post1 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 Packages [10.7 MB] Fetched 21.9 MB in 2s (10.2 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260904T025144Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.4.0-1 [37.1 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.6.0-1 [24.7 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Ign:4 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 Get:5 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Ign:5 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 Get:6 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14.2 [88.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Get:11 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6+b2 [39.9 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libblosc2-7 amd64 2.23.1+ds-2 [201 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20260816 [134 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libdebconfclient0 amd64 0.283 [7572 B] Get:17 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.10-1 [3142 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11+b1 [709 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.92 [123 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.24 [93.3 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dh-python all 7.20260623 [114 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.4-1 [130 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.8.4-1 [186 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.11.0-2 [782 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 cpp-16 amd64 16.2.0-2 [1272 B] Get:35 http://deb.debian.org/debian unstable/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-2 [76.0 MB] Get:36 http://deb.debian.org/debian unstable/main amd64 g++-16 amd64 16.2.0-2 [35.2 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-2 [82.0 MB] Get:38 http://deb.debian.org/debian unstable/main amd64 gcc-16 amd64 16.2.0-2 [535 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 gcc-16-base amd64 16.2.0-2 [38.4 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-2 [87.1 MB] Get:41 http://deb.debian.org/debian unstable/main amd64 libasan8 amd64 16.2.0-2 [2889 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libatomic1 amd64 16.2.0-2 [10.4 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libcc1-0 amd64 16.2.0-2 [46.1 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libgcc-16-dev amd64 16.2.0-2 [2782 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libgcc-s1 amd64 16.2.0-2 [74.1 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.2.0-2 [878 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libgomp1 amd64 16.2.0-2 [151 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:49 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:50 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:51 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:52 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:53 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:54 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b2 [560 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.14-1 [149 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libhdf5-320 amd64 2.2.0+repack-4 [2178 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-320 amd64 2.2.0+repack-4 [81.9 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69+nmu1 [37.1 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-3 [132 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libcrypt1 amd64 1:4.5.2+20251210-1 [100 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.23+dfsg-2 [124 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:75 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:76 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libaudit1 amd64 1:4.1.2-1+b1 [60.2 kB] Get:77 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 bash amd64 5.3-3+b1 [1582 kB] Get:78 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 binutils amd64 2.47-2 [282 kB] Get:79 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 binutils-common amd64 2.47-2 [2685 kB] Get:80 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.47-2 [1072 kB] Get:81 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libbinutils amd64 2.47-2 [536 kB] Get:82 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libctf-nobfd0 amd64 2.47-2 [160 kB] Get:83 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libctf0 amd64 2.47-2 [91.7 kB] Get:84 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libgprofng0 amd64 2.47-2 [820 kB] Get:85 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 cython3 amd64 3.1.6+dfsg-3 [3316 kB] Get:86 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:87 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 dpkg amd64 1.23.7 [1531 kB] Get:88 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 dpkg-dev all 1.23.7 [1318 kB] Get:89 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libdpkg-perl all 1.23.7 [669 kB] Get:90 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:91 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:92 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:93 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc-bin amd64 2.43-4 [620 kB] Get:94 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc-dev-bin amd64 2.43-4 [38.9 kB] Get:95 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc-gconv-modules-extra amd64 2.43-4 [1101 kB] Get:96 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc6 amd64 2.43-4 [1866 kB] Get:97 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc6-dev amd64 2.43-4 [2067 kB] Get:98 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libcap-ng0 amd64 0.9.5-1 [18.5 kB] Get:99 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 bsdextrautils amd64 2.42.2-4 [102 kB] Get:100 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libblkid1 amd64 2.42.2-4 [185 kB] Fetched 296 MB in 3s (91.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libhdf5-hl-320_2.2.0+repack-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/gettext_1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libblas3_3.12.1-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libctf-nobfd0_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/hostname_3.25_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libffi8_3.8.0-2_amd64.deb' dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/libaudit-common_4.1.2-1_all.deb' dpkg-name: info: moved 'libattr1_1%3a2.6.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/libattr1_2.6.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libbsd0_0.12.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libexpat1-dev_2.8.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/groff-base_1.24.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libdebhelper-perl_14.3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libblosc1_1.21.5+ds-2+b2_amd64.deb' dpkg-name: info: moved 'file_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/file_5.47-4_amd64.deb' dpkg-name: info: moved 'diffutils_1%3a3.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/diffutils_3.12-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgdbm6t64_1.26-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libdb5.3t64_5.3.28+dfsg2-11+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/gcc-16-base_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/build-essential_12.12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/coreutils_9.10-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libdebconfclient0_0.283_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libcurl4-gnutls_8.22.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/gzip_1.14-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libfile-stripnondeterminism-perl_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libbrotli1_1.2.0-4+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libexpat1_2.8.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libc-bin_2.43-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/binutils-x86-64-linux-gnu_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/findutils_4.11.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libdpkg-perl_1.23.7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/debianutils_5.24_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/gcc-16_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/dwz_0.17-1_amd64.deb' dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/cpp-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libacl1_2.4.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libblkid1_2.42.2-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/base-passwd_3.6.8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/dh-python_7.20260623_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/autotools-dev_20240727.1+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libc6-dev_2.43-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/dh-strip-nondeterminism_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgcc-s1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgcc-16-dev_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libhdf5-320_2.2.0+repack-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/grep_3.12-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/cython3_3.1.6+dfsg-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/dash_0.5.12-12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgdbm-compat4t64_1.26-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/dh-autoreconf_22_all.deb' dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/libaudit1_4.1.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libc6_2.43-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/debconf_1.5.92_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgomp1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libctf0_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libblosc2-7_2.23.1+ds-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libasan8_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/init-system-helpers_1.69+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/gcc-16-x86-64-linux-gnu_16.2.0-2_amd64.deb' dpkg-name: info: moved 'cpp_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/cpp_16.1.0-3_amd64.deb' dpkg-name: info: moved 'gcc_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/gcc_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/g++-16_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/fonts-mathjax_2.7.9+dfsg-1_all.deb' dpkg-name: info: moved 'libcrypt1_1%3a4.5.2+20251210-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/libcrypt1_4.5.2+20251210-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libelf1t64_0.196-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/binutils_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libcap-ng0_0.9.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgprofng0_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/dpkg_1.23.7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libc-dev-bin_2.43-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libc-gconv-modules-extra_2.43-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libatomic1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/g++-16-x86-64-linux-gnu_16.2.0-2_amd64.deb' dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgmp10_6.3.0+dfsg-5+b2_amd64.deb' dpkg-name: info: moved 'g++_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/g++_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/bsdextrautils_2.42.2-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/gettext-base_1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/cpp-16-x86-64-linux-gnu_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/debhelper_14.3_all.deb' dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/automake_1.18.1-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/autoconf_2.73-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/binutils-common_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libbz2-1.0_1.0.8-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/dpkg-dev_1.23.7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/autopoint_1.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/bzip2_1.0.8-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/bash_5.3-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libcom-err2_1.47.4-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/ca-certificates_20260816_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/docutils-common_0.23+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libbinutils_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgfortran5_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/cpp-16_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgnutls30t64_3.8.13-1_amd64.deb' dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/gcc-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpwe3uc4ng/g++-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libgssapi-krb5-2_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/base-files_14.2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe3uc4ng/libcc1-0_16.2.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 7.20260623 [6996 B] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libhwasan0 amd64 16.2.0-2 [1580 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libitm1 amd64 16.2.0-2 [27.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 liblsan0 amd64 16.2.0-2 [1281 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 16.2.0-2 [147 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libstdc++-16-dev amd64 16.2.0-2 [2754 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 16.2.0-2 [823 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libtsan2 amd64 16.2.0-2 [2574 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libubsan1 amd64 16.2.0-2 [1136 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:17 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.2.0-2 [43.2 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-3 [163 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libselinux1 amd64 3.11-2 [87.3 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libsodium26 amd64 1.0.22-2 [210 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libtool all 2.6.2-2 [553 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-4 [304 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 linux-libc-dev all 7.1.12-1 [2062 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 liblz4-1 amd64 1.10.0-10 [70.3 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 make amd64 4.4.1-3 [463 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 mawk amd64 1.3.4.20260302-1 [142 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.6+20260608-2 [353 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.6+20260608-2 [276 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.6+20260608-2 [445 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libnetcdf22 amd64 1:4.10.1-1+b1 [556 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libhogweed6t64 amd64 3.10.2-1+b1 [335 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libnettle8t64 amd64 3.10.2-1+b1 [305 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libnorm1t64 amd64 1.5.9+dfsg-4+b1 [225 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.6.4-1 [2614 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.6.4-1 [1546 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.6.4-1 [326 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-8 [168 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-8 [46.3 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-8 [246 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-8 [66.9 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 patch amd64 2.8-2 [134 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.48-2 [312 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 perl amd64 5.42.3-1 [266 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 perl-base amd64 5.42.3-1 [1878 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 python-tables-data all 3.11.1-3 [45.9 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.14.7-3 [1012 B] Get:77 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.14.7-3 [8492 B] Get:78 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:79 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libsnappy1v5 amd64 1.2.2-2+b2 [29.0 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 9.1.0-7 [46.1 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libxxhash0 amd64 0.8.3-2+b2 [27.1 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.3-1 [332 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libzmq5 amd64 4.3.5-1+b7 [297 kB] Get:88 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libsframe3 amd64 2.47-2 [84.8 kB] Get:89 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libseccomp2 amd64 2.6.1-1 [49.9 kB] Get:90 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1+b1 [682 kB] Get:91 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python-babel-localedata all 2.17.0-2 [6052 kB] Get:92 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libpython3.14 amd64 3.14.7-1 [2522 kB] Get:93 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libpython3.14-dev amd64 3.14.7-1 [5818 kB] Get:94 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libpython3.14-minimal amd64 3.14.7-1 [899 kB] Get:95 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libpython3.14-stdlib amd64 3.14.7-1 [2356 kB] Get:96 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libsystemd0 amd64 262~rc1-2 [511 kB] Get:97 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libudev1 amd64 262~rc1-2 [148 kB] Get:98 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libmount1 amd64 2.42.2-4 [230 kB] Get:99 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libsmartcols1 amd64 2.42.2-4 [153 kB] Get:100 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libuuid1 amd64 2.42.2-4 [34.4 kB] Fetched 68.9 MB in 1s (53.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libhwasan0_16.2.0-2_amd64.deb' dpkg-name: info: moved 'libnetcdf22_1%3a4.10.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpty2oy117/libnetcdf22_4.10.1-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libmount1_2.42.2-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/ncurses-base_6.6+20260608-2_all.deb' 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'/srv/rebuilderd/tmp/tmpty2oy117/libtinfo6_6.6+20260608-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libjansson4_2.15.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libk5crypto3_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libnorm1t64_1.5.9+dfsg-4+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libjs-mathjax_2.7.9+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libkrb5support0_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libquadmath0_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/perl-base_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libjson-perl_4.10000-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/ncurses-bin_6.6+20260608-2_amd64.deb' dpkg-name: warning: skipping 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'/srv/rebuilderd/tmp/tmpty2oy117/libpam0g_1.7.0-8_amd64.deb' dpkg-name: info: moved 'libmagic1t64_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpty2oy117/libmagic1t64_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/python-tables-data_3.11.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libhogweed6t64_3.10.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/liblzo2-2_2.10-3+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpython3.14-stdlib_3.14.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/perl_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libxxhash0_0.8.3-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libtasn1-6_4.21.0-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpython3.14_3.14.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libzmq5_4.3.5-1+b7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/media-types_14.0.0_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libqhull-r8.0_2020.2-9_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libnettle8t64_3.10.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libkeyutils1_1.6.3-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpam-modules-bin_1.7.0-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libstdc++-16-dev_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libidn2-0_2.3.8-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpython3-stdlib_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libselinux1_3.11-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libxml2-16_2.15.3+dfsg-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpython3-dev_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libisl23_0.28-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libuuid1_2.42.2-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libnghttp3-9_1.17.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libnghttp2-14_1.70.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libssl3t64_3.6.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libsz2_1.1.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/openssl-provider-legacy_3.6.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libkrb5-3_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/mawk_1.3.4.20260302-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libssh2-1t64_1.11.1-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpam-runtime_1.7.0-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libngtcp2-16_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libngtcp2-crypto-gnutls8_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/linux-libc-dev_7.1.12-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libzstd1_1.5.7+dfsg-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/netbase_6.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libmpfr6_4.2.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libp11-kit0_0.26.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/liblsan0_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpython3-all-dev_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libsmartcols1_2.42.2-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libmpc3_1.3.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/liblapack3_3.12.1-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libunistring5_1.4.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libuchardet0_0.0.8-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/pybuild-plugin-pyproject_7.20260623_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libsodium26_1.0.22-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpipeline1_1.5.8-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libsasl2-2_2.1.28+dfsg1-11_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libncursesw6_6.6+20260608-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libmd0_1.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libsystemd0_262~rc1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/liblzma5_5.8.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libreadline8t64_8.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libitm1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libstdc++6_16.2.0-2_amd64.deb' dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpty2oy117/libmagic-mgc_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libperl5.42_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/man-db_2.13.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libpcre2-8-0_10.48-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libtsan2_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libubsan1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/libsframe3_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty2oy117/python-babel-localedata_2.17.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 1.0.0-1 [20.4 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 python3-bs4 all 4.15.0-1 [119 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 python3-html5lib all 1.2-4 [91.7 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Get:7 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.6-3 [106 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 python3-jupyter-core all 5.9.1-1 [36.5 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 python3-jupyterlab-pygments all 0.2.2-3 [6096 B] Get:11 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 3.0.3-2+b1 [13.7 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 python3-mistune all 3.1.4-1 [35.7 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 11.1.0-2 [74.5 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 python3-nbclient all 0.11.0-1 [29.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 python3-nbconvert all 7.17.1-2 [162 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 python3-nbformat all 5.10.4-3 [43.0 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 python3-nbsphinx all 0.9.5+ds-3 [38.5 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.4.2-6 [24.1 MB] Get:19 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.3.3+dfsg-3 [2935 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-3+b1 [6581 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.10.0-1 [18.3 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 python3-tables all 3.11.1-3 [354 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 python3-tables-lib amd64 3.11.1-3 [494 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 9.1.1-1 [280 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 python3-pytest-rerunfailures all 16.4-1 [21.1 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 python3-attr all 26.1.0-1 [72.2 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 python3-bleach all 6.3.0-1 [51.4 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.5.1-1 [85.5 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:33 http://deb.debian.org/debian unstable/main amd64 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.23+dfsg-2 [433 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 python3-fastjsonschema all 2.22.1-1 [24.0 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 python3-gsd amd64 5.0.1-2 [206 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.19-1 [45.2 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 2.0.1-1 [14.9 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-2 [32.8 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-2 [7540 B] Get:43 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.26.0-2 [74.5 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-6 [9112 B] Get:46 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 26.2-2 [84.2 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 python3-pandocfilters all 1.5.1-1 [23.7 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-2 [27.2 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 python3-psutil amd64 7.1.0-1 [224 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-2 [11.7 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 python-tinycss2-common all 1.5.1-5 [44.6 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 python3-tinycss2 all 1.5.1-5 [25.2 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-3 [37.1 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2026.3.post1-1 [34.3 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.7.0-3 [119 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 python3-versioneer all 0.29-3 [42.8 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 python3-webencodings all 0.5.1-6 [11.2 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.14.7-3 [984 B] Get:62 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.14.7-3 [1008 B] Get:63 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.14.7-3 [26.7 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.37.0+~2025.1.1-3 [24.1 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 python3-roman-numerals all 4.1.0-1 [9196 B] Get:69 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-3 [331 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 80.9.0-2 [224 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 3.1.1-1 [61.9 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 python3-soupsieve all 2.8.4-1 [38.7 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 9.1.0-7 [504 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 9.1.0-7 [700 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 sysvinit-utils amd64 3.18-1 [29.7 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-5 [825 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026c-1 [260 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.47.0-1 [26.9 kB] Get:81 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-cftime amd64 1.6.5-1+b1 [504 kB] Get:82 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-jupyter-client all 8.8.0-1 [93.2 kB] Get:83 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-netcdf4 amd64 1.7.4-1 [892 kB] Get:84 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-numexpr amd64 2.14.2-1 [146 kB] Get:85 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-numpy amd64 1:2.4.6+ds-4 [7509 kB] Get:86 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-4 [137 kB] Get:87 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-babel all 2.17.0-2 [117 kB] Get:88 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-cffi-backend amd64 2.1.1-1 [121 kB] Get:89 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-charset-normalizer amd64 3.4.7-2 [247 kB] Get:90 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-installer all 1.0.1+dfsg1-2 [19.6 kB] Get:91 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-tornado amd64 6.5.5-4 [359 kB] Get:92 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3.14 amd64 3.14.7-1 [861 kB] Get:93 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3.14-dev amd64 3.14.7-1 [508 kB] Get:94 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3.14-minimal amd64 3.14.7-1 [2714 kB] Get:95 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-zmq amd64 27.1.0-1+b1 [215 kB] Get:96 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-rpds-py amd64 0.30.0-2 [317 kB] Get:97 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-scipy amd64 1.17.1-5 [18.6 MB] Get:98 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-setuptools all 80.9.0-2 [698 kB] Get:99 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-traitlets all 5.14.3+really5.14.3-5 [70.1 kB] Get:100 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 util-linux amd64 2.42.2-4 [1244 kB] Fetched 77.5 MB in 6s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-bs4_4.15.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/sensible-utils_0.0.26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-wheel_0.47.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jinja2_3.1.6-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-autocommand_2.2.2-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-dateutil_2.9.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-docutils_0.23+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-nbconvert_7.17.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-gsd_5.0.1-2_amd64.deb' dpkg-name: info: moved 'python3-numpy_1%3a2.4.6+ds-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-numpy_2.4.6+ds-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-mistune_3.1.4-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-all-dev_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pandas-lib_2.3.3+dfsg-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-setuptools_80.9.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-iniconfig_2.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-alabaster_1.0.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-markupsafe_3.0.3-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-html5lib_1.2-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-cpuinfo_9.0.0+git20221119-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/tzdata_2026c-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-idna_3.19-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pygments_2.20.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pluggy_1.6.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3.14-minimal_3.14.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/readline-common_8.3-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jaraco.functools_4.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-tornado_6.5.5-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-requests_2.34.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-minimal_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-inflect_7.5.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pytest-rerunfailures_16.4-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-platformdirs_4.10.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-typing-extensions_4.16.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-webencodings_0.5.1-6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pyparsing_3.3.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3.14_3.14.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-numexpr_2.14.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jupyter-client_8.8.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-imagesize_2.0.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-scipy_1.17.1-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-soupsieve_2.8.4-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-babel_2.17.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-fastjsonschema_2.22.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-tables_3.11.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-more-itertools_11.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-all_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-sphinx_9.1.0-7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python-tinycss2-common_1.5.1-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pytz_2026.3.post1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-urllib3_2.7.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-psutil_7.1.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-certifi_2026.7.22+ds-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-nbformat_5.10.4-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-zmq_27.1.0-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-defusedxml_0.7.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-tinycss2_1.5.1-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-traitlets_5.14.3+really5.14.3-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jaraco.context_6.0.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-tables-lib_3.11.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pytest_9.1.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-snowballstemmer_3.1.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pandas_2.3.3+dfsg-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-build_1.5.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jsonschema_4.26.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-packaging_26.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-installer_1.0.1+dfsg1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/tar_1.35+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-chardet_5.2.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-networkx_3.4.2-6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pyproject-hooks_1.2.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3.14-dev_3.14.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-bleach_6.3.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-zipp_3.23.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-cftime_1.6.5-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jsonschema-specifications_2023.12.1-6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-decorator_5.3.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/sed_4.9-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-referencing_0.37.0+~2025.1.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-rpds-py_0.30.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-nbsphinx_0.9.5+ds-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pandocfilters_1.5.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-attr_26.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jaraco.text_4.0.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jupyter-core_5.9.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/sphinx-common_9.1.0-7_all.deb' dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.6+ds-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-numpy-dev_2.4.6+ds-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-nbclient_0.11.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/sgml-base_1.31+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-charset-normalizer_3.4.7-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-typeguard_4.4.4-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-cffi-backend_2.1.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-pkg-resources_80.9.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-versioneer_0.29-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-roman-numerals_4.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-dev_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/util-linux_2.42.2-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-netcdf4_1.7.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/sysvinit-utils_3.18-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5axl1y3j/python3-jupyterlab-pygments_0.2.2-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.21 [19.0 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.3-1 [740 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Fetched 1768 kB in 0s (88.3 MB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmphcnb9481/zlib1g_1.3.dfsg+really1.3.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphcnb9481/xml-core_0.21_all.deb' dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmphcnb9481/zlib1g-dev_1.3.dfsg+really1.3.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphcnb9481/xz-utils_5.8.3-1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpufszcrad/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.ByDSf2mVEM as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.ByDSf2mVEM 127.0.0.1 - - [11/Sep/2026 07:13:56] code 404, message File not found 127.0.0.1 - - [11/Sep/2026 07:13:56] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42911 ./ InRelease 127.0.0.1 - - [11/Sep/2026 07:13:56] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:42911 ./ Release [462 B] 127.0.0.1 - - [11/Sep/2026 07:13:56] code 404, message File not found 127.0.0.1 - - [11/Sep/2026 07:13:56] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42911 ./ Release.gpg 127.0.0.1 - - [11/Sep/2026 07:13:56] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:42911 ./ Packages [376 kB] Fetched 376 kB in 0s (23.8 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./libjson-perl_4.10000-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./sphinx-common_9.1.0-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-babel_2.17.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-sphinx_9.1.0-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-nbsphinx_0.9.5%2bds-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-pandas-lib_2.3.3%2bdfsg-3%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-versioneer_0.29-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-dev_3.14.7-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-all_3.14.7-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-all-dev_3.14.7-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-pandas_2.3.3%2bdfsg-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./dh-python_7.20260623_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./pybuild-plugin-pyproject_7.20260623_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-gsd_5.0.1-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-networkx_3.4.2-6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-cpuinfo_9.0.0%2bgit20221119-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./fonts-mathjax_2.7.9%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./libjs-mathjax_2.7.9%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-pytest-rerunfailures_16.4-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./python3-tables_3.11.1-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Sep/2026 07:14:28] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpufszcrad/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.ByDSf2mVEM Reading package lists... Building dependency tree... Reading state information... libhdf5-hl-320 is already the newest version (2.2.0+repack-4). libhdf5-hl-320 set to manually installed. gettext is already the newest version (1.0-3). gettext set to manually installed. libblas3 is already the newest version (3.12.1-8). libblas3 set to manually installed. libctf-nobfd0 is already the newest version (2.47-2). libctf-nobfd0 set to manually installed. libattr1 is already the newest version (1:2.6.0-1). hostname is already the newest version (3.25). libffi8 is already the newest version (3.8.0-2). libffi8 set to manually installed. libbsd0 is already the newest version (0.12.2-3). libbsd0 set to manually installed. libexpat1-dev is already the newest version (2.8.4-1). libexpat1-dev set to manually installed. groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. libdebhelper-perl is already the newest version (14.3). libdebhelper-perl set to manually installed. libblosc1 is already the newest version (1.21.5+ds-2+b2). libblosc1 set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). gcc-16-base is already the newest version (16.2.0-2). libaudit-common is already the newest version (1:4.1.2-1). build-essential is already the newest version (12.12). build-essential set to manually installed. coreutils is already the newest version (9.10-1). libaudit1 is already the newest version (1:4.1.2-1+b1). libdebconfclient0 is already the newest version (0.283). libcurl4-gnutls is already the newest version (8.22.0-1). libcurl4-gnutls set to manually installed. gzip is already the newest version (1.14-1). libfile-stripnondeterminism-perl is already the newest version (1.15.1-1). libfile-stripnondeterminism-perl set to manually installed. libbrotli1 is already the newest version (1.2.0-4+b1). libbrotli1 set to manually installed. libexpat1 is already the newest version (2.8.4-1). libexpat1 set to manually installed. libc-bin is already the newest version (2.43-4). binutils-x86-64-linux-gnu is already the newest version (2.47-2). binutils-x86-64-linux-gnu set to manually installed. findutils is already the newest version (4.11.0-2). libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. debianutils is already the newest version (5.24). gcc-16 is already the newest version (16.2.0-2). gcc-16 set to manually installed. dwz is already the newest version (0.17-1). dwz set to manually installed. libacl1 is already the newest version (2.4.0-1). libblkid1 is already the newest version (2.42.2-4). base-passwd is already the newest version (3.6.8). g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. dh-python is already the newest version (7.20260623). dh-python set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libc6-dev is already the newest version (2.43-4). libc6-dev set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:16.1.0-3). cpp-x86-64-linux-gnu set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. libgcc-s1 is already the newest version (16.2.0-2). libgcc-16-dev is already the newest version (16.2.0-2). libgcc-16-dev set to manually installed. libhdf5-320 is already the newest version (2.2.0+repack-4). libhdf5-320 set to manually installed. grep is already the newest version (3.12-1). cython3 is already the newest version (3.1.6+dfsg-3). cython3 set to manually installed. dash is already the newest version (0.5.12-12). libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libc6 is already the newest version (2.43-4). debconf is already the newest version (1.5.92). libgomp1 is already the newest version (16.2.0-2). libgomp1 set to manually installed. libctf0 is already the newest version (2.47-2). libctf0 set to manually installed. libcrypt1 is already the newest version (1:4.5.2+20251210-1). libblosc2-7 is already the newest version (2.23.1+ds-2). libblosc2-7 set to manually installed. libasan8 is already the newest version (16.2.0-2). libasan8 set to manually installed. init-system-helpers is already the newest version (1.69+nmu1). gcc-16-x86-64-linux-gnu is already the newest version (16.2.0-2). gcc-16-x86-64-linux-gnu set to manually installed. file is already the newest version (1:5.47-4). file set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. g++-16 is already the newest version (16.2.0-2). g++-16 set to manually installed. fonts-mathjax is already the newest version (2.7.9+dfsg-1). fonts-mathjax set to manually installed. libelf1t64 is already the newest version (0.196-1). libelf1t64 set to manually installed. binutils is already the newest version (2.47-2). binutils set to manually installed. libcap-ng0 is already the newest version (0.9.5-1). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libgprofng0 is already the newest version (2.47-2). libgprofng0 set to manually installed. dpkg is already the newest version (1.23.7). libc-dev-bin is already the newest version (2.43-4). libc-dev-bin set to manually installed. libc-gconv-modules-extra is already the newest version (2.43-4). automake is already the newest version (1:1.18.1-4). automake set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:16.1.0-3). g++-x86-64-linux-gnu set to manually installed. libatomic1 is already the newest version (16.2.0-2). libatomic1 set to manually installed. g++-16-x86-64-linux-gnu is already the newest version (16.2.0-2). g++-16-x86-64-linux-gnu set to manually installed. bsdextrautils is already the newest version (2.42.2-4). bsdextrautils set to manually installed. gettext-base is already the newest version (1.0-3). gettext-base set to manually installed. cpp-16-x86-64-linux-gnu is already the newest version (16.2.0-2). cpp-16-x86-64-linux-gnu set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). debhelper is already the newest version (14.3). debhelper set to manually installed. autoconf is already the newest version (2.73-2). autoconf set to manually installed. cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. diffutils is already the newest version (1:3.12-1). binutils-common is already the newest version (2.47-2). binutils-common set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. autopoint is already the newest version (1.0-3). autopoint set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:16.1.0-3). gcc-x86-64-linux-gnu set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. bash is already the newest version (5.3-3+b1). libcom-err2 is already the newest version (1.47.4-1+b1). libcom-err2 set to manually installed. ca-certificates is already the newest version (20260816). ca-certificates set to manually installed. docutils-common is already the newest version (0.23+dfsg-2). docutils-common set to manually installed. libbinutils is already the newest version (2.47-2). libbinutils set to manually installed. libgfortran5 is already the newest version (16.2.0-2). libgfortran5 set to manually installed. cpp-16 is already the newest version (16.2.0-2). cpp-16 set to manually installed. libgnutls30t64 is already the newest version (3.8.13-1). libgnutls30t64 set to manually installed. libgssapi-krb5-2 is already the newest version (1.22.1-3). libgssapi-krb5-2 set to manually installed. base-files is already the newest version (14.2). libcc1-0 is already the newest version (16.2.0-2). libcc1-0 set to manually installed. libhwasan0 is already the newest version (16.2.0-2). libhwasan0 set to manually installed. libmount1 is already the newest version (2.42.2-4). ncurses-base is already the newest version (6.6+20260608-2). libseccomp2 is already the newest version (2.6.1-1). libseccomp2 set to manually installed. libsnappy1v5 is already the newest version (1.2.2-2+b2). libsnappy1v5 set to manually installed. libmagic-mgc is already the newest version (1:5.47-4). libmagic-mgc set to manually installed. libtool is already the newest version (2.6.2-2). libtool set to manually installed. libpsl5t64 is already the newest version (0.23.3-1). libpsl5t64 set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. liblz4-1 is already the newest version (1.10.0-10). liblz4-1 set to manually installed. libpgm-5.3-0t64 is already the newest version (5.3.128~dfsg-3). libpgm-5.3-0t64 set to manually installed. libmagic1t64 is already the newest version (1:5.47-4). libmagic1t64 set to manually installed. libpython3.14-minimal is already the newest version (3.14.7-1). libpython3.14-minimal set to manually installed. openssl is already the newest version (3.6.4-1). openssl set to manually installed. libpam-modules is already the newest version (1.7.0-8). libtinfo6 is already the newest version (6.6+20260608-2). libjansson4 is already the newest version (2.15.1-1). libjansson4 set to manually installed. libk5crypto3 is already the newest version (1.22.1-3). libk5crypto3 set to manually installed. libnorm1t64 is already the newest version (1.5.9+dfsg-4+b1). libnorm1t64 set to manually installed. libjs-mathjax is already the newest version (2.7.9+dfsg-1). libjs-mathjax set to manually installed. libkrb5support0 is already the newest version (1.22.1-3). libkrb5support0 set to manually installed. libquadmath0 is already the newest version (16.2.0-2). libquadmath0 set to manually installed. perl-base is already the newest version (5.42.3-1). libjson-perl is already the newest version (4.10000-1). libjson-perl set to manually installed. ncurses-bin is already the newest version (6.6+20260608-2). libsasl2-modules-db is already the newest version (2.1.28+dfsg1-11). libsasl2-modules-db set to manually installed. libpython3.14-dev is already the newest version (3.14.7-1). libpython3.14-dev set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libsqlite3-0 is already the newest version (3.53.4-2). libsqlite3-0 set to manually installed. libjs-sphinxdoc is already the newest version (9.1.0-7). libjs-sphinxdoc set to manually installed. perl-modules-5.42 is already the newest version (5.42.3-1). perl-modules-5.42 set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. libudev1 is already the newest version (262~rc1-2). libldap2 is already the newest version (2.6.14+dfsg-2). libldap2 set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. libpam0g is already the newest version (1.7.0-8). python-tables-data is already the newest version (3.11.1-3). python-tables-data set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1+b1). libhogweed6t64 set to manually installed. liblzo2-2 is already the newest version (2.10-3+b2). liblzo2-2 set to manually installed. libpython3.14-stdlib is already the newest version (3.14.7-1). libpython3.14-stdlib set to manually installed. perl is already the newest version (5.42.3-1). perl set to manually installed. libxxhash0 is already the newest version (0.8.3-2+b2). libxxhash0 set to manually installed. libtasn1-6 is already the newest version (4.21.0-2+b1). libtasn1-6 set to manually installed. libpython3.14 is already the newest version (3.14.7-1). libpython3.14 set to manually installed. libzmq5 is already the newest version (4.3.5-1+b7). libzmq5 set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. libqhull-r8.0 is already the newest version (2020.2-9). libqhull-r8.0 set to manually installed. libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b2). libkeyutils1 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-8). libstdc++-16-dev is already the newest version (16.2.0-2). libstdc++-16-dev set to manually installed. libidn2-0 is already the newest version (2.3.8-5). libidn2-0 set to manually installed. libpython3-stdlib is already the newest version (3.14.7-3). libpython3-stdlib set to manually installed. libselinux1 is already the newest version (3.11-2). libxml2-16 is already the newest version (2.15.3+dfsg-1+b1). libxml2-16 set to manually installed. libpython3-dev is already the newest version (3.14.7-3). libpython3-dev set to manually installed. libisl23 is already the newest version (0.28-1). libisl23 set to manually installed. libuuid1 is already the newest version (2.42.2-4). libnghttp3-9 is already the newest version (1.17.0-1). libnghttp3-9 set to manually installed. libnghttp2-14 is already the newest version (1.70.0-1). libnghttp2-14 set to manually installed. libssl3t64 is already the newest version (3.6.4-1). libsz2 is already the newest version (1.1.7-1). libsz2 set to manually installed. openssl-provider-legacy is already the newest version (3.6.4-1). libkrb5-3 is already the newest version (1.22.1-3). libkrb5-3 set to manually installed. mawk is already the newest version (1.3.4.20260302-1). libssh2-1t64 is already the newest version (1.11.1-6). libssh2-1t64 set to manually installed. libpam-runtime is already the newest version (1.7.0-8). libngtcp2-16 is already the newest version (1.24.0-1). libngtcp2-16 set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.24.0-1). libngtcp2-crypto-gnutls8 set to manually installed. linux-libc-dev is already the newest version (7.1.12-1). linux-libc-dev set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). netbase is already the newest version (6.6). netbase set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libp11-kit0 is already the newest version (0.26.5-1). libp11-kit0 set to manually installed. liblsan0 is already the newest version (16.2.0-2). liblsan0 set to manually installed. libpython3-all-dev is already the newest version (3.14.7-3). libpython3-all-dev set to manually installed. libsmartcols1 is already the newest version (2.42.2-4). libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. liblapack3 is already the newest version (3.12.1-8). liblapack3 set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. libnetcdf22 is already the newest version (1:4.10.1-1+b1). libnetcdf22 set to manually installed. pybuild-plugin-pyproject is already the newest version (7.20260623). pybuild-plugin-pyproject set to manually installed. libsodium26 is already the newest version (1.0.22-2). libsodium26 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-11). libsasl2-2 set to manually installed. libncursesw6 is already the newest version (6.6+20260608-2). libncursesw6 set to manually installed. libmd0 is already the newest version (1.2.0-2). libsystemd0 is already the newest version (262~rc1-2). liblzma5 is already the newest version (5.8.3-1). libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libitm1 is already the newest version (16.2.0-2). libitm1 set to manually installed. libstdc++6 is already the newest version (16.2.0-2). libstdc++6 set to manually installed. libperl5.42 is already the newest version (5.42.3-1). libperl5.42 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libpcre2-8-0 is already the newest version (10.48-2). libtsan2 is already the newest version (16.2.0-2). libtsan2 set to manually installed. libubsan1 is already the newest version (16.2.0-2). libubsan1 set to manually installed. libsframe3 is already the newest version (2.47-2). libsframe3 set to manually installed. python-babel-localedata is already the newest version (2.17.0-2). python-babel-localedata set to manually installed. python3-bs4 is already the newest version (4.15.0-1). python3-bs4 set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. python3-wheel is already the newest version (0.47.0-1). python3-wheel set to manually installed. python3-jinja2 is already the newest version (3.1.6-3). python3-jinja2 set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. python3-dateutil is already the newest version (2.9.0-5). python3-dateutil set to manually installed. python3-docutils is already the newest version (0.23+dfsg-2). python3-docutils set to manually installed. python3-nbconvert is already the newest version (7.17.1-2). python3-nbconvert set to manually installed. python3-gsd is already the newest version (5.0.1-2). python3-gsd set to manually installed. python3-mistune is already the newest version (3.1.4-1). python3-mistune set to manually installed. python3-all-dev is already the newest version (3.14.7-3). python3-all-dev set to manually installed. python3-pandas-lib is already the newest version (2.3.3+dfsg-3+b1). python3-pandas-lib set to manually installed. python3-setuptools is already the newest version (80.9.0-2). python3-setuptools set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. python3-alabaster is already the newest version (1.0.0-1). python3-alabaster set to manually installed. python3-markupsafe is already the newest version (3.0.3-2+b1). python3-markupsafe set to manually installed. python3-html5lib is already the newest version (1.2-4). python3-html5lib set to manually installed. python3-cpuinfo is already the newest version (9.0.0+git20221119-3). python3-cpuinfo set to manually installed. tzdata is already the newest version (2026c-1). tzdata set to manually installed. python3-idna is already the newest version (3.19-1). python3-idna set to manually installed. python3-pygments is already the newest version (2.20.0+dfsg-2). python3-pygments set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. python3.14-minimal is already the newest version (3.14.7-1). python3.14-minimal set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. python3-tornado is already the newest version (6.5.5-4). python3-tornado set to manually installed. python3 is already the newest version (3.14.7-3). python3 set to manually installed. python3-requests is already the newest version (2.34.2-1). python3-requests set to manually installed. python3-minimal is already the newest version (3.14.7-3). python3-minimal set to manually installed. python3-inflect is already the newest version (7.5.0-2). python3-inflect set to manually installed. python3-pytest-rerunfailures is already the newest version (16.4-1). python3-pytest-rerunfailures set to manually installed. python3-platformdirs is already the newest version (4.10.0-1). python3-platformdirs set to manually installed. python3-typing-extensions is already the newest version (4.16.0-5). python3-typing-extensions set to manually installed. python3-webencodings is already the newest version (0.5.1-6). python3-webencodings set to manually installed. python3-pyparsing is already the newest version (3.3.2-2). python3-pyparsing set to manually installed. python3.14 is already the newest version (3.14.7-1). python3.14 set to manually installed. python3-numexpr is already the newest version (2.14.2-1). python3-numexpr set to manually installed. python3-jupyter-client is already the newest version (8.8.0-1). python3-jupyter-client set to manually installed. python3-imagesize is already the newest version (2.0.1-1). python3-imagesize set to manually installed. python3-scipy is already the newest version (1.17.1-5). python3-scipy set to manually installed. python3-soupsieve is already the newest version (2.8.4-1). python3-soupsieve set to manually installed. python3-babel is already the newest version (2.17.0-2). python3-babel set to manually installed. python3-fastjsonschema is already the newest version (2.22.1-1). python3-fastjsonschema set to manually installed. python3-numpy-dev is already the newest version (1:2.4.6+ds-4). python3-numpy-dev set to manually installed. python3-tables is already the newest version (3.11.1-3). python3-tables set to manually installed. python3-more-itertools is already the newest version (11.1.0-2). python3-more-itertools set to manually installed. python3-all is already the newest version (3.14.7-3). python3-all set to manually installed. python3-sphinx is already the newest version (9.1.0-7). python3-sphinx set to manually installed. python-tinycss2-common is already the newest version (1.5.1-5). python-tinycss2-common set to manually installed. python3-pytz is already the newest version (2026.3.post1-1). python3-pytz set to manually installed. python3-urllib3 is already the newest version (2.7.0-3). python3-urllib3 set to manually installed. python3-psutil is already the newest version (7.1.0-1). python3-psutil set to manually installed. python3-certifi is already the newest version (2026.7.22+ds-1). python3-certifi set to manually installed. python3-nbformat is already the newest version (5.10.4-3). python3-nbformat set to manually installed. python3-zmq is already the newest version (27.1.0-1+b1). python3-zmq set to manually installed. python3-defusedxml is already the newest version (0.7.1-3). python3-defusedxml set to manually installed. python3-tinycss2 is already the newest version (1.5.1-5). python3-tinycss2 set to manually installed. python3-traitlets is already the newest version (5.14.3+really5.14.3-5). python3-traitlets set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. python3-tables-lib is already the newest version (3.11.1-3). python3-tables-lib set to manually installed. python3-pytest is already the newest version (9.1.1-1). python3-pytest set to manually installed. python3-snowballstemmer is already the newest version (3.1.1-1). python3-snowballstemmer set to manually installed. python3-numpy is already the newest version (1:2.4.6+ds-4). python3-numpy set to manually installed. python3-pandas is already the newest version (2.3.3+dfsg-3). python3-pandas set to manually installed. python3-build is already the newest version (1.5.1-1). python3-build set to manually installed. python3-jsonschema is already the newest version (4.26.0-2). python3-jsonschema set to manually installed. python3-packaging is already the newest version (26.2-2). python3-packaging set to manually installed. python3-installer is already the newest version (1.0.1+dfsg1-2). python3-installer set to manually installed. tar is already the newest version (1.35+dfsg-5). python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. python3-networkx is already the newest version (3.4.2-6). python3-networkx set to manually installed. python3-pyproject-hooks is already the newest version (1.2.0-2). python3-pyproject-hooks set to manually installed. python3.14-dev is already the newest version (3.14.7-1). python3.14-dev set to manually installed. python3-bleach is already the newest version (6.3.0-1). python3-bleach set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. python3-cftime is already the newest version (1.6.5-1+b1). python3-cftime set to manually installed. python3-jsonschema-specifications is already the newest version (2023.12.1-6). python3-jsonschema-specifications set to manually installed. python3-decorator is already the newest version (5.3.1-1). python3-decorator set to manually installed. sed is already the newest version (4.9-3). python3-referencing is already the newest version (0.37.0+~2025.1.1-3). python3-referencing set to manually installed. python3-rpds-py is already the newest version (0.30.0-2). python3-rpds-py set to manually installed. python3-nbsphinx is already the newest version (0.9.5+ds-3). python3-nbsphinx set to manually installed. python3-pandocfilters is already the newest version (1.5.1-1). python3-pandocfilters set to manually installed. python3-attr is already the newest version (26.1.0-1). python3-attr set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. python3-jupyter-core is already the newest version (5.9.1-1). python3-jupyter-core set to manually installed. sphinx-common is already the newest version (9.1.0-7). sphinx-common set to manually installed. python3-nbclient is already the newest version (0.11.0-1). python3-nbclient set to manually installed. sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. python3-charset-normalizer is already the newest version (3.4.7-2). python3-charset-normalizer set to manually installed. python3-typeguard is already the newest version (4.4.4-3). python3-typeguard set to manually installed. python3-cffi-backend is already the newest version (2.1.1-1). python3-cffi-backend set to manually installed. python3-pkg-resources is already the newest version (80.9.0-2). python3-pkg-resources set to manually installed. python3-versioneer is already the newest version (0.29-3). python3-versioneer set to manually installed. python3-roman-numerals is already the newest version (4.1.0-1). python3-roman-numerals set to manually installed. python3-dev is already the newest version (3.14.7-3). python3-dev set to manually installed. util-linux is already the newest version (2.42.2-4). python3-netcdf4 is already the newest version (1.7.4-1). python3-netcdf4 set to manually installed. sysvinit-utils is already the newest version (3.18-1). python3-jupyterlab-pygments is already the newest version (0.2.2-3). python3-jupyterlab-pygments set to manually installed. xml-core is already the newest version (0.21). xml-core set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.ByDSf2mVEM (Reading database ... 34667 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.ByDSf2mVEM I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.ByDSf2mVEM I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.ByDSf2mVEM... I: success in 252.7675 seconds Downloading packages 1to 100 out of 304 Downloading packages 101to 200 out of 304 Downloading packages 201to 300 out of 304 Downloading packages 301to 304 out of 304 env --chdir=/srv/rebuilderd/tmp/rebuilderdBhctHn/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1772564709 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildTL3m09/debrebuild.sbuildrc.PLRfKy3CgBfE sbuild --build=amd64 --host=amd64 --arch-any --no-arch-all --binNMU-changelog= mdtraj (1.11.1.post1-3+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild with Python 3.14 only -- amd64 / i386 Build Daemon (x86-ubc-01) Tue, 03 Mar 2026 19:05:09 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildTL3m09/debrebuild.tar.YtukMycuJkpx --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mdtraj-1.11.1.post1 /srv/rebuilderd/tmp/rebuilderdBhctHn/inputs/mdtraj_1.11.1.post1-3.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl44-amd64.novalocal +==============================================================================+ | mdtraj 1.11.1.post1-3+b1 (amd64) Fri, 11 Sep 2026 07:18:09 +0000 | +==============================================================================+ Package: mdtraj Version: 1.11.1.post1-3+b1 Source Version: 1.11.1.post1-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildTL3m09/debrebuild.tar.YtukMycuJkpx to /srv/rebuilderd/tmp/tmp.sbuild.yLrlzHHqp3... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 11 Sep 2026 07:18:16 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdBhctHn/inputs/mdtraj_1.11.1.post1-3.dsc exists in /srv/rebuilderd/tmp/rebuilderdBhctHn/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 11 Sep 2026 07:18:17 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, pybuild-plugin-pyproject, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-netcdf4, python3-networkx, python3-packaging, python3-pandas, python3-pyparsing, python3-pytest, python3-pytest-rerunfailures, python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, pybuild-plugin-pyproject, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-netcdf4, python3-networkx, python3-packaging, python3-pandas, python3-pyparsing, python3-pytest, python3-pytest-rerunfailures, python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-yH1uyb/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 11 Sep 2026 07:18:21 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64 arm64 i386 all) +------------------------------------------------------------------------------+ | Build environment Fri, 11 Sep 2026 07:18:21 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47-2 dpkg-dev_1.23.7 g++-16_16.2.0-2 gcc-16_16.2.0-2 libc6-dev_2.43-4 libstdc++-16-dev_16.2.0-2 libstdc++6_16.2.0-2 linux-libc-dev_7.1.12-1 Package versions: autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3+b1 binutils_2.47-2 binutils-common_2.47-2 binutils-x86-64-linux-gnu_2.47-2 bsdextrautils_2.42.2-4 build-essential_12.12 bzip2_1.0.8-6+b2 ca-certificates_20260816 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-2 cpp-16-x86-64-linux-gnu_16.2.0-2 cpp-x86-64-linux-gnu_4:16.1.0-3 cython3_3.1.6+dfsg-3 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debianutils_5.24 dh-autoreconf_22 dh-python_7.20260623 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 docutils-common_0.23+dfsg-2 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 fonts-mathjax_2.7.9+dfsg-1 g++_4:16.1.0-3 g++-16_16.2.0-2 g++-16-x86-64-linux-gnu_16.2.0-2 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-2 gcc-16-base_16.2.0-2 gcc-16-x86-64-linux-gnu_16.2.0-2 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-3 gettext-base_1.0-3 grep_3.12-1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu1 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libgprofng0_2.47-2 libgssapi-krb5-2_1.22.1-3 libhdf5-320_2.2.0+repack-4 libhdf5-hl-320_2.2.0+repack-4 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-2 libidn2-0_2.3.8-5 libisl23_0.28-1 libitm1_16.2.0-2 libjansson4_2.15.1-1 libjs-mathjax_2.7.9+dfsg-1 libjs-sphinxdoc_9.1.0-7 libjson-perl_4.10000-1 libk5crypto3_1.22.1-3 libkeyutils1_1.6.3-6+b2 libkrb5-3_1.22.1-3 libkrb5support0_1.22.1-3 liblapack3_3.12.1-8 libldap2_2.6.14+dfsg-2 liblsan0_16.2.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 liblzo2-2_2.10-3+b2 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-4 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnetcdf22_1:4.10.1-1+b1 libnettle8t64_3.10.2-1+b1 libnghttp2-14_1.70.0-1 libnghttp3-9_1.17.0-1 libngtcp2-16_1.24.0-1 libngtcp2-crypto-gnutls8_1.24.0-1 libnorm1t64_1.5.9+dfsg-4+b1 libp11-kit0_0.26.5-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-2 libperl5.42_5.42.3-1 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python3-psutil_7.1.0-1 python3-pygments_2.20.0+dfsg-2 python3-pyparsing_3.3.2-2 python3-pyproject-hooks_1.2.0-2 python3-pytest_9.1.1-1 python3-pytest-rerunfailures_16.4-1 python3-pytz_2026.3.post1-1 python3-referencing_0.37.0+~2025.1.1-3 python3-requests_2.34.2-1 python3-roman-numerals_4.1.0-1 python3-rpds-py_0.30.0-2 python3-scipy_1.17.1-5 python3-setuptools_80.9.0-2 python3-snowballstemmer_3.1.1-1 python3-soupsieve_2.8.4-1 python3-sphinx_9.1.0-7 python3-tables_3.11.1-3 python3-tables-lib_3.11.1-3 python3-tinycss2_1.5.1-5 python3-tornado_6.5.5-4 python3-traitlets_5.14.3+really5.14.3-5 python3-typeguard_4.4.4-3 python3-typing-extensions_4.16.0-5 python3-urllib3_2.7.0-3 python3-versioneer_0.29-3 python3-webencodings_0.5.1-6 python3-wheel_0.47.0-1 python3-zipp_3.23.0-1 python3-zmq_27.1.0-1+b1 python3.14_3.14.7-1 python3.14-dev_3.14.7-1 python3.14-minimal_3.14.7-1 readline-common_8.3-4 sed_4.9-3 sensible-utils_0.0.26 sgml-base_1.31+nmu1 sphinx-common_9.1.0-7 sysvinit-utils_3.18-1 tar_1.35+dfsg-5 tzdata_2026c-1 util-linux_2.42.2-4 xml-core_0.21 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 11 Sep 2026 07:18:21 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mdtraj Binary: python3-mdtraj, python-mdtraj-doc Architecture: any-amd64 arm64 i386 all Version: 1.11.1.post1-3 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://mdtraj.org/ Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/debichem-team/mdtraj Vcs-Git: https://salsa.debian.org/debichem-team/mdtraj.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-gsd, python3-ipykernel, python3-jupyter-client, python3-matplotlib, python3-nbformat, python3-netcdf4, python3-packaging, python3-pandas, python3-pytest, python3-pytest-rerunfailures, python3-sklearn Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, pybuild-plugin-pyproject, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-netcdf4, python3-networkx, python3-packaging , python3-pandas, python3-pyparsing, python3-pytest , python3-pytest-rerunfailures , python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax Build-Depends-Indep: pandoc, python3-msmb-theme, python3-ipykernel, python3-jupyter-client, python3-matplotlib, python3-nbconvert, python3-nbformat, python3-numpydoc, python3-sklearn Package-List: python-mdtraj-doc deb doc optional arch=all python3-mdtraj deb python optional arch=any-amd64,arm64,i386 Checksums-Sha1: 5bd6e2c259d9910cfd9450987fe17042290ababf 22729550 mdtraj_1.11.1.post1.orig.tar.gz 51c7f01c63b8795f4109e8b91136e9bad24af650 301808 mdtraj_1.11.1.post1-3.debian.tar.xz Checksums-Sha256: 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dpkg-source: info: applying docs_use_local_mathjax.patch dpkg-source: info: applying build_dir_pybuild.patch dpkg-source: info: applying python_hashbang.patch dpkg-source: info: applying 32bit_skip_image_molecule.patch dpkg-source: info: applying test_relax_tol.patch dpkg-source: info: applying rename-mdconvert-mdtraj.patch dpkg-source: info: applying drop_notebook_in_docs.patch dpkg-source: info: applying test_increase_timeout.patch dpkg-source: info: applying openmm_version_skip.patch dpkg-source: warning: diff '/build/reproducible-path/mdtraj-1.11.1.post1/debian/patches/fix_netcdf_PR2143.patch' patches file /build/reproducible-path/mdtraj-1.11.1.post1/mdtraj/formats/netcdf.py more than once dpkg-source: info: applying fix_netcdf_PR2143.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 1.11.1.post1-3+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1772564709 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mdtraj dpkg-buildpackage: info: source version 1.11.1.post1-3+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-ubc-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from /build/reproducible-path/mdtraj-1.11.1.post1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.14 --parallel=6 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.1.post1' for f in mdtraj/formats/binpos/binpos.c \ mdtraj/formats/dcd/dcd.c \ mdtraj/formats/dtr/dtr.cpp \ mdtraj/formats/tng/tng.c \ mdtraj/formats/xtc/trr.c \ mdtraj/formats/xtc/xtc.c \ mdtraj/geometry/drid.cpp \ mdtraj/geometry/neighborlist.cpp \ mdtraj/geometry/neighbors.cpp \ mdtraj/geometry/src/_geometry.cpp \ mdtraj/rmsd/_lprmsd.cpp \ mdtraj/rmsd/_rmsd.cpp \ mdtraj/version.py; \ do rm -f $f; done rm -rf mdtraj/core/lib rm -rf docs/api/generated rm -rf __pycache__ .pybuild find . -name "lib*.a" -delete make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.11.1.post1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-mdtraj.substvars debian/python-mdtraj-doc.substvars debian/files rm -fr -- debian/python3-mdtraj/ debian/tmp/ debian/python-mdtraj-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.14 --parallel=6 dh_auto_build -a -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.14 --parallel=6 I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/mdtraj-1.11.1.post1/.pybuild/cpython3_3.14_mdtraj * Building wheel... Using built-in specs. COLLECT_GCC=/usr/bin/x86_64-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-linux-gnu/16/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 16.2.0-2' --with-bugurl=file:///usr/share/doc/gcc-16/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-16 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-16-16.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-16-16.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 16.2.0 (Debian 16.2.0-2) warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-314/mdtraj copying mdtraj/_version.py -> build/lib.linux-x86_64-cpython-314/mdtraj copying mdtraj/io.py -> build/lib.linux-x86_64-cpython-314/mdtraj copying mdtraj/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj creating build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/dihedral.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/rg.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/thermodynamic_properties.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/distance.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/hbond.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/order.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/angle.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/pi_stacking.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/alignment.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/dssp.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/sasa.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/rdf.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/contact.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/shape.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry copying mdtraj/geometry/internal.py -> build/lib.linux-x86_64-cpython-314/mdtraj/geometry creating build/lib.linux-x86_64-cpython-314/mdtraj/testing copying mdtraj/testing/testing.py -> build/lib.linux-x86_64-cpython-314/mdtraj/testing copying mdtraj/testing/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/testing copying mdtraj/testing/docscrape.py -> build/lib.linux-x86_64-cpython-314/mdtraj/testing copying mdtraj/testing/docstrings.py -> build/lib.linux-x86_64-cpython-314/mdtraj/testing creating build/lib.linux-x86_64-cpython-314/mdtraj/reporters copying mdtraj/reporters/netcdfreporter.py -> build/lib.linux-x86_64-cpython-314/mdtraj/reporters copying mdtraj/reporters/dcdreporter.py -> build/lib.linux-x86_64-cpython-314/mdtraj/reporters copying mdtraj/reporters/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/reporters copying mdtraj/reporters/xtcreporter.py -> build/lib.linux-x86_64-cpython-314/mdtraj/reporters copying mdtraj/reporters/hdf5reporter.py -> build/lib.linux-x86_64-cpython-314/mdtraj/reporters copying mdtraj/reporters/basereporter.py -> build/lib.linux-x86_64-cpython-314/mdtraj/reporters creating build/lib.linux-x86_64-cpython-314/mdtraj/utils copying mdtraj/utils/contextmanagers.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils copying mdtraj/utils/singleton.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils copying mdtraj/utils/zipped.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils copying mdtraj/utils/delay_import.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils copying mdtraj/utils/unitcell.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils copying mdtraj/utils/rotation.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils copying mdtraj/utils/validation.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils copying mdtraj/utils/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils creating build/lib.linux-x86_64-cpython-314/mdtraj/nmr copying mdtraj/nmr/scalar_couplings.py -> build/lib.linux-x86_64-cpython-314/mdtraj/nmr copying mdtraj/nmr/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/nmr copying mdtraj/nmr/shift_wrappers.py -> build/lib.linux-x86_64-cpython-314/mdtraj/nmr creating build/lib.linux-x86_64-cpython-314/mdtraj/core copying mdtraj/core/trajectory.py -> build/lib.linux-x86_64-cpython-314/mdtraj/core copying mdtraj/core/selection.py -> build/lib.linux-x86_64-cpython-314/mdtraj/core copying mdtraj/core/topology.py -> build/lib.linux-x86_64-cpython-314/mdtraj/core copying mdtraj/core/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/core copying mdtraj/core/element.py -> build/lib.linux-x86_64-cpython-314/mdtraj/core copying mdtraj/core/residue_names.py -> build/lib.linux-x86_64-cpython-314/mdtraj/core creating build/lib.linux-x86_64-cpython-314/mdtraj/scripts copying mdtraj/scripts/mdconvert.py -> build/lib.linux-x86_64-cpython-314/mdtraj/scripts copying mdtraj/scripts/mdinspect.py -> build/lib.linux-x86_64-cpython-314/mdtraj/scripts copying mdtraj/scripts/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/scripts creating build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/lammpstrj.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/prmtop.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/mol2.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/psf.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/netcdf.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/gro.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/xyzfile.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/mdcrd.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/registry.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/openmmxml.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/amberrst.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/hdf5.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/lh5.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/hoomdxml.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/gsd.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats copying mdtraj/formats/arc.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats creating build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/unit_math.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/unit_operators.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/baseunit.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/doctests.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/mymatrix.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/standard_dimensions.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/unit_definitions.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/unit.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/quantity.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/prefix.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/constants.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit copying mdtraj/utils/unit/basedimension.py -> build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit creating build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/pdbx.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/PdbxContainers.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/PdbxReader.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/pdbxfile.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx creating build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbfile.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbstructure.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb copying mdtraj/formats/pdb/__init__.py -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb creating build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/pdbNames.xml -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/residues.xml -> build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb/data UPDATING build/lib.linux-x86_64-cpython-314/mdtraj/_version.py set build/lib.linux-x86_64-cpython-314/mdtraj/_version.py to '1.11.1.post1' running build_ext building 'mdtraj.formats.xtc' extension creating build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src building 'mdtraj.formats.dcd' extension building 'mdtraj.formats.trr' extension building 'mdtraj._rmsd' extension building 'mdtraj.formats.dtr' extension creating build/temp.linux-x86_64-cpython-314/mdtraj/formats/dcd building 'mdtraj._lprmsd' extension creating build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src creating build/temp.linux-x86_64-cpython-314/mdtraj/rmsd creating build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare creating build/temp.linux-x86_64-cpython-314/mdtraj/rmsd creating build/temp.linux-x86_64-cpython-314/mdtraj/formats/dcd/src creating build/temp.linux-x86_64-cpython-314/mdtraj/formats/dtr creating build/temp.linux-x86_64-cpython-314/mdtraj/formats/dtr/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/dtr/dtr.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/dtr/dtr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/_lprmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/dcd/dcd.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/dcd/dcd.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/xtc/src/xdrfile_trr.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdrfile_trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/xtc/trr.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/xtc/src/xdrfile_xtc.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/xtc/xtc.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/dcd/src/dcdplugin.c -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/dcd/src/dcdplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/formats/dcd/dcd.o build/temp.linux-x86_64-cpython-314/mdtraj/formats/dcd/src/dcdplugin.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/mdtraj/formats/dcd.cpython-314-x86_64-linux-gnu.so building 'mdtraj.core.lib.libtheobald' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/theobald_rmsd.o -msse2 -mssse3 -O3 -funroll-loops --std=c++11 x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/center.o -msse2 -mssse3 -O3 -funroll-loops --std=c++11 x86_64-linux-gnu-gcc-ar rcs build/lib.linux-x86_64-cpython-314/mdtraj/core/lib/libtheobald.a build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/theobald_rmsd.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/center.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/formats/dtr/src/dtrplugin.cxx -o build/temp.linux-x86_64-cpython-314/mdtraj/formats/dtr/src/dtrplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare building 'mdtraj.geometry._geometry' extension creating build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/_geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dtr/src/dtrplugin.cxx: In member function ‘bool desres::molfile::Timekeys::init(const std::string&)’: mdtraj/formats/dtr/src/dtrplugin.cxx:487:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %ld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:487:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %ld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/Munkres.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:667:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 667 | sprintf(answer, "%03x/", d1); | ^ In file included from /usr/include/stdio.h:974, from mdtraj/formats/dtr/include/molfile_plugin.h:35, from mdtraj/formats/dtr/include/dtrplugin.hxx:46, from mdtraj/formats/dtr/src/dtrplugin.cxx:42: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:667:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:665:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function ‘std::string DDreldir(const std::string&, int, int)’, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: mdtraj/formats/dtr/src/dtrplugin.cxx:665:29: note: directive argument in the range [0, 2147483646] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:665:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:706:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 706 | sprintf(sub, "%03x/", i); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:706:22: note: directive argument in the range [0, 2147483646] 706 | sprintf(sub, "%03x/", i); | ^~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:706:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:714:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(subsub, "%03x", j); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:714:29: note: directive argument in the range [0, 2147483646] 714 | sprintf(subsub, "%03x", j); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:714:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdrfile_xtc.o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/xtc.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/mdtraj/formats/xtc.cpython-314-x86_64-linux-gnu.so building 'mdtraj.geometry.drid' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/drid.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/drid.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/fancy_index.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/formats/dtr/dtr.o build/temp.linux-x86_64-cpython-314/mdtraj/formats/dtr/src/dtrplugin.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/mdtraj/formats/dtr.cpython-314-x86_64-linux-gnu.so building 'mdtraj.geometry.neighbors' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/_lprmsd.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/Munkres.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/center.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/euclidean_permutation.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/fancy_index.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/rotation.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/x86_64-linux-gnu -lgomp -o build/lib.linux-x86_64-cpython-314/mdtraj/_lprmsd.cpython-314-x86_64-linux-gnu.so building 'mdtraj.geometry.neighborlist' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/src/xdrfile_trr.o build/temp.linux-x86_64-cpython-314/mdtraj/formats/xtc/trr.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-314/mdtraj/formats/trr.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/_rmsd.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/center.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/rotation.o build/temp.linux-x86_64-cpython-314/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/x86_64-linux-gnu -lgomp -o build/lib.linux-x86_64-cpython-314/mdtraj/_rmsd.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/dssp.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/dridkernels.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/moments.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/geometry/drid.o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/dridkernels.o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/moments.o -L/usr/lib/x86_64-linux-gnu -lgomp -o build/lib.linux-x86_64-cpython-314/mdtraj/geometry/drid.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/geometry/neighbors.o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/neighbors.o -L/usr/lib/x86_64-linux-gnu -lgomp -o build/lib.linux-x86_64-cpython-314/mdtraj/geometry/neighbors.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/geometry/neighborlist.o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/neighborlist.o -L/usr/lib/x86_64-linux-gnu -lgomp -o build/lib.linux-x86_64-cpython-314/mdtraj/geometry/neighborlist.cpython-314-x86_64-linux-gnu.so x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/sasa.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.1.post1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/_geometry.o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/dssp.o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/geometry.o build/temp.linux-x86_64-cpython-314/mdtraj/geometry/src/sasa.o -L/usr/lib/x86_64-linux-gnu -lgomp -o build/lib.linux-x86_64-cpython-314/mdtraj/geometry/_geometry.cpython-314-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/mdtraj copying build/lib.linux-x86_64-cpython-314/mdtraj/_version.py -> build/bdist.linux-x86_64/wheel/./mdtraj creating build/bdist.linux-x86_64/wheel/mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/dihedral.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/rg.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/thermodynamic_properties.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/distance.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/hbond.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/order.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/angle.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/neighborlist.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/pi_stacking.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/alignment.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/dssp.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/sasa.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/rdf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/neighbors.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/contact.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/shape.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/_geometry.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/drid.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/geometry/internal.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry copying build/lib.linux-x86_64-cpython-314/mdtraj/_lprmsd.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj creating build/bdist.linux-x86_64/wheel/mdtraj/testing copying build/lib.linux-x86_64-cpython-314/mdtraj/testing/testing.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing copying build/lib.linux-x86_64-cpython-314/mdtraj/testing/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing copying build/lib.linux-x86_64-cpython-314/mdtraj/testing/docscrape.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing copying build/lib.linux-x86_64-cpython-314/mdtraj/testing/docstrings.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing creating build/bdist.linux-x86_64/wheel/mdtraj/reporters copying build/lib.linux-x86_64-cpython-314/mdtraj/reporters/netcdfreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters copying build/lib.linux-x86_64-cpython-314/mdtraj/reporters/dcdreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters copying build/lib.linux-x86_64-cpython-314/mdtraj/reporters/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters copying build/lib.linux-x86_64-cpython-314/mdtraj/reporters/xtcreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters copying build/lib.linux-x86_64-cpython-314/mdtraj/reporters/hdf5reporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters copying build/lib.linux-x86_64-cpython-314/mdtraj/reporters/basereporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters copying build/lib.linux-x86_64-cpython-314/mdtraj/io.py -> build/bdist.linux-x86_64/wheel/./mdtraj copying build/lib.linux-x86_64-cpython-314/mdtraj/_rmsd.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj copying build/lib.linux-x86_64-cpython-314/mdtraj/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj creating build/bdist.linux-x86_64/wheel/mdtraj/utils copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/contextmanagers.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/singleton.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/zipped.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/delay_import.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unitcell.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/rotation.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/validation.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils creating build/bdist.linux-x86_64/wheel/mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/unit_math.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/unit_operators.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/baseunit.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/doctests.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/mymatrix.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/standard_dimensions.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/unit_definitions.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/unit.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/quantity.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/prefix.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/constants.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-314/mdtraj/utils/unit/basedimension.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit creating build/bdist.linux-x86_64/wheel/mdtraj/nmr copying build/lib.linux-x86_64-cpython-314/mdtraj/nmr/scalar_couplings.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr copying build/lib.linux-x86_64-cpython-314/mdtraj/nmr/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr copying build/lib.linux-x86_64-cpython-314/mdtraj/nmr/shift_wrappers.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr creating build/bdist.linux-x86_64/wheel/mdtraj/core copying build/lib.linux-x86_64-cpython-314/mdtraj/core/trajectory.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core creating build/bdist.linux-x86_64/wheel/mdtraj/core/lib copying build/lib.linux-x86_64-cpython-314/mdtraj/core/lib/libtheobald.a -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib copying build/lib.linux-x86_64-cpython-314/mdtraj/core/lib/center.h -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib copying build/lib.linux-x86_64-cpython-314/mdtraj/core/lib/theobald_rmsd.h -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib copying build/lib.linux-x86_64-cpython-314/mdtraj/core/selection.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core copying build/lib.linux-x86_64-cpython-314/mdtraj/core/topology.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core copying build/lib.linux-x86_64-cpython-314/mdtraj/core/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core copying build/lib.linux-x86_64-cpython-314/mdtraj/core/element.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core copying build/lib.linux-x86_64-cpython-314/mdtraj/core/residue_names.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core creating build/bdist.linux-x86_64/wheel/mdtraj/scripts copying build/lib.linux-x86_64-cpython-314/mdtraj/scripts/mdconvert.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts copying build/lib.linux-x86_64-cpython-314/mdtraj/scripts/mdinspect.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts copying build/lib.linux-x86_64-cpython-314/mdtraj/scripts/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts creating build/bdist.linux-x86_64/wheel/mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/lammpstrj.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/prmtop.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/mol2.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/dtr.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/psf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/netcdf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/gro.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/dcd.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/xyzfile.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/mdcrd.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats creating build/bdist.linux-x86_64/wheel/mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx/pdbx.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx/PdbxContainers.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx/PdbxReader.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdbx/pdbxfile.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/registry.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/openmmxml.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/xtc.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/amberrst.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/hdf5.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/trr.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/lh5.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats creating build/bdist.linux-x86_64/wheel/mdtraj/formats/pdb copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb/pdbfile.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb creating build/bdist.linux-x86_64/wheel/mdtraj/formats/pdb/data copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb/data/pdbNames.xml -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb/data copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb/data/residues.xml -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb/data copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb/pdbstructure.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/hoomdxml.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/gsd.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-314/mdtraj/formats/arc.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats running install_egg_info running egg_info creating mdtraj.egg-info writing mdtraj.egg-info/PKG-INFO writing dependency_links to mdtraj.egg-info/dependency_links.txt writing entry points to mdtraj.egg-info/entry_points.txt writing requirements to mdtraj.egg-info/requires.txt writing top-level names to mdtraj.egg-info/top_level.txt writing manifest file 'mdtraj.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'mdtraj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching '__pycache__' no previously-included directories found matching '*.pyc' adding license file 'LICENSE' writing manifest file 'mdtraj.egg-info/SOURCES.txt' Copying mdtraj.egg-info to build/bdist.linux-x86_64/wheel/./mdtraj-1.11.1.post1.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/mdtraj-1.11.1.post1.dist-info/WHEEL creating '/build/reproducible-path/mdtraj-1.11.1.post1/.pybuild/cpython3_3.14_mdtraj/.tmp-p7ou4wyr/mdtraj-1.11.1.post1-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'mdtraj/__init__.py' adding 'mdtraj/_lprmsd.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/_rmsd.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/_version.py' adding 'mdtraj/io.py' adding 'mdtraj/core/__init__.py' adding 'mdtraj/core/element.py' adding 'mdtraj/core/residue_names.py' adding 'mdtraj/core/selection.py' adding 'mdtraj/core/topology.py' adding 'mdtraj/core/trajectory.py' adding 'mdtraj/core/lib/center.h' adding 'mdtraj/core/lib/libtheobald.a' adding 'mdtraj/core/lib/theobald_rmsd.h' adding 'mdtraj/formats/__init__.py' adding 'mdtraj/formats/amberrst.py' adding 'mdtraj/formats/arc.py' adding 'mdtraj/formats/dcd.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/formats/dtr.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/formats/gro.py' adding 'mdtraj/formats/gsd.py' adding 'mdtraj/formats/hdf5.py' adding 'mdtraj/formats/hoomdxml.py' adding 'mdtraj/formats/lammpstrj.py' adding 'mdtraj/formats/lh5.py' adding 'mdtraj/formats/mdcrd.py' adding 'mdtraj/formats/mol2.py' adding 'mdtraj/formats/netcdf.py' adding 'mdtraj/formats/openmmxml.py' adding 'mdtraj/formats/prmtop.py' adding 'mdtraj/formats/psf.py' adding 'mdtraj/formats/registry.py' adding 'mdtraj/formats/trr.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/formats/xtc.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/formats/xyzfile.py' adding 'mdtraj/formats/pdb/__init__.py' adding 'mdtraj/formats/pdb/pdbfile.py' adding 'mdtraj/formats/pdb/pdbstructure.py' adding 'mdtraj/formats/pdb/data/pdbNames.xml' adding 'mdtraj/formats/pdb/data/residues.xml' adding 'mdtraj/formats/pdbx/PdbxContainers.py' adding 'mdtraj/formats/pdbx/PdbxReader.py' adding 'mdtraj/formats/pdbx/__init__.py' adding 'mdtraj/formats/pdbx/pdbx.py' adding 'mdtraj/formats/pdbx/pdbxfile.py' adding 'mdtraj/geometry/__init__.py' adding 'mdtraj/geometry/_geometry.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/geometry/alignment.py' adding 'mdtraj/geometry/angle.py' adding 'mdtraj/geometry/contact.py' adding 'mdtraj/geometry/dihedral.py' adding 'mdtraj/geometry/distance.py' adding 'mdtraj/geometry/drid.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/geometry/dssp.py' adding 'mdtraj/geometry/hbond.py' adding 'mdtraj/geometry/internal.py' adding 'mdtraj/geometry/neighborlist.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/geometry/neighbors.cpython-314-x86_64-linux-gnu.so' adding 'mdtraj/geometry/order.py' adding 'mdtraj/geometry/pi_stacking.py' adding 'mdtraj/geometry/rdf.py' adding 'mdtraj/geometry/rg.py' adding 'mdtraj/geometry/sasa.py' adding 'mdtraj/geometry/shape.py' adding 'mdtraj/geometry/thermodynamic_properties.py' adding 'mdtraj/nmr/__init__.py' adding 'mdtraj/nmr/scalar_couplings.py' adding 'mdtraj/nmr/shift_wrappers.py' adding 'mdtraj/reporters/__init__.py' adding 'mdtraj/reporters/basereporter.py' adding 'mdtraj/reporters/dcdreporter.py' adding 'mdtraj/reporters/hdf5reporter.py' adding 'mdtraj/reporters/netcdfreporter.py' adding 'mdtraj/reporters/xtcreporter.py' adding 'mdtraj/scripts/__init__.py' adding 'mdtraj/scripts/mdconvert.py' adding 'mdtraj/scripts/mdinspect.py' adding 'mdtraj/testing/__init__.py' adding 'mdtraj/testing/docscrape.py' adding 'mdtraj/testing/docstrings.py' adding 'mdtraj/testing/testing.py' adding 'mdtraj/utils/__init__.py' adding 'mdtraj/utils/contextmanagers.py' adding 'mdtraj/utils/delay_import.py' adding 'mdtraj/utils/rotation.py' adding 'mdtraj/utils/singleton.py' adding 'mdtraj/utils/unitcell.py' adding 'mdtraj/utils/validation.py' adding 'mdtraj/utils/zipped.py' adding 'mdtraj/utils/unit/__init__.py' adding 'mdtraj/utils/unit/basedimension.py' adding 'mdtraj/utils/unit/baseunit.py' adding 'mdtraj/utils/unit/constants.py' adding 'mdtraj/utils/unit/doctests.py' adding 'mdtraj/utils/unit/mymatrix.py' adding 'mdtraj/utils/unit/prefix.py' adding 'mdtraj/utils/unit/quantity.py' adding 'mdtraj/utils/unit/standard_dimensions.py' adding 'mdtraj/utils/unit/unit.py' adding 'mdtraj/utils/unit/unit_definitions.py' adding 'mdtraj/utils/unit/unit_math.py' adding 'mdtraj/utils/unit/unit_operators.py' adding 'mdtraj-1.11.1.post1.dist-info/licenses/LICENSE' adding 'mdtraj-1.11.1.post1.dist-info/METADATA' adding 'mdtraj-1.11.1.post1.dist-info/WHEEL' adding 'mdtraj-1.11.1.post1.dist-info/entry_points.txt' adding 'mdtraj-1.11.1.post1.dist-info/top_level.txt' adding 'mdtraj-1.11.1.post1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built mdtraj-1.11.1.post1-cp314-cp314-linux_x86_64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module dh_auto_test -a -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.14 --parallel=6 I: pybuild base:385: cd /build/reproducible-path/mdtraj-1.11.1.post1/.pybuild/cpython3_3.14_mdtraj/build; python3.14 -m pytest -k 'not ( mdconvert or pi_stacking.ipynb or nmr.ipynb or test_image_molecules or test_3 or from_url or test_1vii_url_and_gz or test_1vii_load_from_mixture )' ============================= test session starts ============================== platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 -- /usr/bin/python3.14 cachedir: .pytest_cache rootdir: /build/reproducible-path/mdtraj-1.11.1.post1/.pybuild/cpython3_3.14_mdtraj/build configfile: pyproject.toml testpaths: tests, examples plugins: rerunfailures-16.4, typeguard-4.4.4 collecting ... collected 1175 items / 24 deselected / 1151 selected tests/test_alignment.py::test_rmsd_zero PASSED [ 0%] tests/test_alignment.py::test_rmsd_nonzero PASSED [ 0%] tests/test_alignment.py::test_transform PASSED [ 0%] tests/test_alignment.py::test_transform2 PASSED [ 0%] tests/test_angles.py::test_angle_pbc_0 PASSED [ 0%] tests/test_angles.py::test_generator PASSED [ 0%] tests/test_angles.py::test_angle_180[True] PASSED [ 0%] tests/test_angles.py::test_angle_180[False] PASSED [ 0%] tests/test_arc.py::test_read_0 PASSED [ 0%] tests/test_arc.py::test_read_arctraj PASSED [ 0%] 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[ 44%] tests/test_topology.py::test_topology_openmm_formal_charges SKIPPED [ 44%] tests/test_topology.py::test_topology_dataframe_formal_charges PASSED [ 45%] tests/test_topology.py::test_topology_pandas PASSED [ 45%] tests/test_topology.py::test_topology_pandas_TIP4PEW PASSED [ 45%] tests/test_topology.py::test_topology_pandas_2residues_same_resSeq PASSED [ 45%] tests/test_topology.py::test_topology_numbers PASSED [ 45%] tests/test_topology.py::test_topology_unique_elements_bpti PASSED [ 45%] tests/test_topology.py::test_chain PASSED [ 45%] tests/test_topology.py::test_residue PASSED [ 45%] tests/test_topology.py::test_segment_id PASSED [ 45%] tests/test_topology.py::test_nonconsective_resSeq PASSED [ 45%] tests/test_topology.py::test_pickle PASSED [ 45%] tests/test_topology.py::test_atoms_by_name PASSED [ 45%] tests/test_topology.py::test_select_atom_indices PASSED [ 46%] tests/test_topology.py::test_top_dataframe_openmm_roundtrip SKIPPED [ 46%] tests/test_topology.py::test_n_bonds PASSED [ 46%] tests/test_topology.py::test_load_unknown_topology PASSED [ 46%] tests/test_topology.py::test_unique_pairs PASSED [ 46%] tests/test_topology.py::test_select_pairs PASSED [ 46%] tests/test_topology.py::test_to_fasta PASSED [ 46%] tests/test_topology.py::test_subset PASSED [ 46%] tests/test_topology.py::test_subset_re_index_residues PASSED [ 46%] tests/test_topology.py::test_molecules PASSED [ 46%] tests/test_topology.py::test_copy_and_hash PASSED [ 46%] tests/test_topology.py::test_copy[traj.h5] PASSED [ 47%] tests/test_topology.py::test_copy[1ply_charge.pdb] PASSED [ 47%] tests/test_topology.py::test_topology_sliced_residue_indices PASSED [ 47%] tests/test_topology.py::test_topology_join PASSED [ 47%] tests/test_topology.py::test_topology_join_keep_resSeq PASSED [ 47%] tests/test_topology.py::test_topology_join_formal_charge PASSED [ 47%] tests/test_topology.py::test_delete_atom_by_index PASSED [ 47%] tests/test_trajectory.py::test_mismatch PASSED [ 47%] tests/test_trajectory.py::test_box PASSED [ 47%] tests/test_trajectory.py::test_load_pdb_box PASSED [ 47%] tests/test_trajectory.py::test_load_pdb_gz PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[nc] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[h5] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[xtc] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[trr] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[dcd] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[mdcrd] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[dtr] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[xyz] SKIPPED (xyz does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[xyz.gz] SKIPPED (xyz.gz...) [ 48%] tests/test_trajectory.py::test_box_load_save[lammpstrj] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[lh5] SKIPPED (lh5 does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[pdb] SKIPPED (pdb does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[pdb.gz] SKIPPED (pdb.gz...) [ 49%] tests/test_trajectory.py::test_box_load_save[ncrst] PASSED [ 49%] tests/test_trajectory.py::test_box_load_save[rst7] PASSED [ 49%] tests/test_trajectory.py::test_box_load_save[gro] PASSED [ 49%] tests/test_trajectory.py::test_slice PASSED [ 49%] tests/test_trajectory.py::test_slice2 PASSED [ 49%] tests/test_trajectory.py::test_read_path[nc] PASSED [ 49%] tests/test_trajectory.py::test_read_path[h5] PASSED [ 49%] tests/test_trajectory.py::test_read_path[xtc] PASSED [ 49%] tests/test_trajectory.py::test_read_path[trr] PASSED [ 49%] tests/test_trajectory.py::test_read_path[dcd] PASSED [ 49%] tests/test_trajectory.py::test_read_path[mdcrd] PASSED [ 49%] tests/test_trajectory.py::test_read_path[dtr] PASSED [ 50%] tests/test_trajectory.py::test_read_path[xyz] PASSED [ 50%] tests/test_trajectory.py::test_read_path[xyz.gz] PASSED [ 50%] tests/test_trajectory.py::test_read_path[lammpstrj] PASSED [ 50%] tests/test_trajectory.py::test_read_path[lh5] PASSED [ 50%] tests/test_trajectory.py::test_read_path[pdb] PASSED [ 50%] tests/test_trajectory.py::test_read_path[pdb.gz] PASSED [ 50%] tests/test_trajectory.py::test_read_path[ncrst] XFAIL (These referen...) [ 50%] tests/test_trajectory.py::test_read_path[rst7] XFAIL (These referenc...) [ 50%] tests/test_trajectory.py::test_read_path[gro] PASSED [ 50%] tests/test_trajectory.py::test_write_path[nc] PASSED [ 50%] tests/test_trajectory.py::test_write_path[h5] PASSED [ 50%] tests/test_trajectory.py::test_write_path[xtc] PASSED [ 51%] tests/test_trajectory.py::test_write_path[trr] PASSED [ 51%] tests/test_trajectory.py::test_write_path[dcd] PASSED [ 51%] tests/test_trajectory.py::test_write_path[mdcrd] SKIPPED (mdcrd can ...) [ 51%] tests/test_trajectory.py::test_write_path[dtr] PASSED [ 51%] tests/test_trajectory.py::test_write_path[xyz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[xyz.gz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[lammpstrj] PASSED [ 51%] tests/test_trajectory.py::test_write_path[lh5] PASSED [ 51%] tests/test_trajectory.py::test_write_path[pdb] PASSED [ 51%] tests/test_trajectory.py::test_write_path[pdb.gz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[ncrst] SKIPPED (ncrst can ...) [ 52%] tests/test_trajectory.py::test_write_path[rst7] SKIPPED (rst7 can on...) [ 52%] tests/test_trajectory.py::test_write_path[gro] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-nc] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-h5] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-xtc] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-trr] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-dcd] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-mdcrd] SKIPPED (mdcrd c...) [ 52%] tests/test_trajectory.py::test_read_write[nc-dtr] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-xyz] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-xyz.gz] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-lammpstrj] PASSED [ 53%] tests/test_trajectory.py::test_read_write[nc-lh5] PASSED [ 53%] tests/test_trajectory.py::test_read_write[nc-pdb] PASSED [ 53%] tests/test_trajectory.py::test_read_write[nc-pdb.gz] PASSED [ 53%] tests/test_trajectory.py::test_read_write[nc-ncrst] SKIPPED (ncrst c...) [ 53%] tests/test_trajectory.py::test_read_write[nc-rst7] SKIPPED (rst7 can...) [ 53%] tests/test_trajectory.py::test_read_write[nc-gro] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-nc] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-h5] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-xtc] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-trr] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-dcd] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-mdcrd] SKIPPED (mdcrd c...) [ 54%] tests/test_trajectory.py::test_read_write[h5-dtr] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-xyz] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-xyz.gz] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-lammpstrj] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-lh5] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-pdb] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-pdb.gz] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-ncrst] SKIPPED (ncrst c...) [ 54%] tests/test_trajectory.py::test_read_write[h5-rst7] SKIPPED (rst7 can...) [ 54%] tests/test_trajectory.py::test_read_write[h5-gro] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-nc] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-h5] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-xtc] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-trr] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-dcd] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-mdcrd] SKIPPED (mdcrd ...) [ 55%] tests/test_trajectory.py::test_read_write[xtc-dtr] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-xyz] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-xyz.gz] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-lammpstrj] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-lh5] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-pdb] PASSED [ 56%] tests/test_trajectory.py::test_read_write[xtc-pdb.gz] PASSED [ 56%] tests/test_trajectory.py::test_read_write[xtc-ncrst] SKIPPED (ncrst ...) [ 56%] tests/test_trajectory.py::test_read_write[xtc-rst7] SKIPPED (rst7 ca...) [ 56%] tests/test_trajectory.py::test_read_write[xtc-gro] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-nc] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-h5] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-xtc] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-trr] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-dcd] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-mdcrd] SKIPPED (mdcrd ...) [ 56%] tests/test_trajectory.py::test_read_write[trr-dtr] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-xyz] PASSED [ 57%] tests/test_trajectory.py::test_read_write[trr-xyz.gz] PASSED [ 57%] tests/test_trajectory.py::test_read_write[trr-lammpstrj] PASSED [ 57%] tests/test_trajectory.py::test_read_write[trr-lh5] PASSED [ 57%] tests/test_trajectory.py::test_read_write[trr-pdb] PASSED [ 57%] tests/test_trajectory.py::test_read_write[trr-pdb.gz] PASSED [ 57%] tests/test_trajectory.py::test_read_write[trr-ncrst] SKIPPED (ncrst ...) [ 57%] tests/test_trajectory.py::test_read_write[trr-rst7] SKIPPED (rst7 ca...) [ 57%] tests/test_trajectory.py::test_read_write[trr-gro] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-nc] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-h5] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-xtc] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-trr] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-dcd] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-mdcrd] SKIPPED (mdcrd ...) [ 58%] tests/test_trajectory.py::test_read_write[dcd-dtr] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-xyz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-xyz.gz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-lammpstrj] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-lh5] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-pdb] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-pdb.gz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-ncrst] SKIPPED (ncrst ...) [ 58%] tests/test_trajectory.py::test_read_write[dcd-rst7] SKIPPED (rst7 ca...) [ 59%] tests/test_trajectory.py::test_read_write[dcd-gro] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-nc] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-h5] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-xtc] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-trr] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-dcd] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-mdcrd] SKIPPED (mdcr...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-dtr] SKIPPED (dtr ne...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-xyz] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-xyz.gz] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-lammpstrj] SKIPPED (...) [ 60%] tests/test_trajectory.py::test_read_write[mdcrd-lh5] PASSED [ 60%] tests/test_trajectory.py::test_read_write[mdcrd-pdb] PASSED [ 60%] tests/test_trajectory.py::test_read_write[mdcrd-pdb.gz] PASSED [ 60%] tests/test_trajectory.py::test_read_write[mdcrd-ncrst] SKIPPED (ncrs...) [ 60%] tests/test_trajectory.py::test_read_write[mdcrd-rst7] SKIPPED (rst7 ...) [ 60%] tests/test_trajectory.py::test_read_write[mdcrd-gro] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-nc] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-h5] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-xtc] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-trr] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-dcd] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-mdcrd] SKIPPED (mdcrd ...) [ 61%] tests/test_trajectory.py::test_read_write[dtr-dtr] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-xyz] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-xyz.gz] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-lammpstrj] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-lh5] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-pdb] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-pdb.gz] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-ncrst] SKIPPED (ncrst ...) [ 61%] tests/test_trajectory.py::test_read_write[dtr-rst7] SKIPPED (rst7 ca...) [ 61%] tests/test_trajectory.py::test_read_write[dtr-gro] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-nc] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-h5] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-xtc] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-trr] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-dcd] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-mdcrd] SKIPPED (mdcrd ...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-dtr] SKIPPED (dtr need...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-xyz] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-xyz.gz] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-lammpstrj] SKIPPED (la...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-lh5] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-pdb] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-pdb.gz] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz-ncrst] SKIPPED (ncrst ...) [ 63%] tests/test_trajectory.py::test_read_write[xyz-rst7] SKIPPED (rst7 ca...) [ 63%] tests/test_trajectory.py::test_read_write[xyz-gro] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-nc] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-h5] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-xtc] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-trr] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-dcd] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-mdcrd] SKIPPED (mdc...) [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-dtr] SKIPPED (dtr n...) [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-xyz] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-xyz.gz] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-lammpstrj] SKIPPED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-lh5] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-pdb] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-pdb.gz] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-ncrst] SKIPPED (ncr...) [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-rst7] SKIPPED (rst7...) [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-gro] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-nc] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-h5] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-xtc] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-trr] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-dcd] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-mdcrd] SKIPPED (...) [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-dtr] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-xyz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-xyz.gz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-lammpstrj] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-lh5] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-pdb] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-pdb.gz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-ncrst] SKIPPED (...) [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-rst7] SKIPPED (r...) [ 66%] tests/test_trajectory.py::test_read_write[lammpstrj-gro] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-nc] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-h5] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-xtc] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-trr] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-dcd] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-mdcrd] SKIPPED (mdcrd ...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-dtr] SKIPPED (dtr need...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-xyz] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-xyz.gz] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-lammpstrj] SKIPPED (la...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-lh5] PASSED [ 67%] tests/test_trajectory.py::test_read_write[lh5-pdb] PASSED [ 67%] tests/test_trajectory.py::test_read_write[lh5-pdb.gz] PASSED [ 67%] tests/test_trajectory.py::test_read_write[lh5-ncrst] SKIPPED (ncrst ...) [ 67%] tests/test_trajectory.py::test_read_write[lh5-rst7] SKIPPED (rst7 ca...) [ 67%] tests/test_trajectory.py::test_read_write[lh5-gro] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-nc] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-h5] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-xtc] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-trr] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-dcd] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-mdcrd] SKIPPED (mdcrd ...) [ 68%] tests/test_trajectory.py::test_read_write[pdb-dtr] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-xyz] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-xyz.gz] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-lammpstrj] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-lh5] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-pdb] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-pdb.gz] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-ncrst] SKIPPED (ncrst ...) [ 68%] tests/test_trajectory.py::test_read_write[pdb-rst7] SKIPPED (rst7 ca...) [ 68%] tests/test_trajectory.py::test_read_write[pdb-gro] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-nc] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-h5] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-xtc] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-trr] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-dcd] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-mdcrd] SKIPPED (mdc...) [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-dtr] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-xyz] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-xyz.gz] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-lammpstrj] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-lh5] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-pdb] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-pdb.gz] PASSED [ 70%] tests/test_trajectory.py::test_read_write[pdb.gz-ncrst] SKIPPED (ncr...) [ 70%] tests/test_trajectory.py::test_read_write[pdb.gz-rst7] SKIPPED (rst7...) [ 70%] tests/test_trajectory.py::test_read_write[pdb.gz-gro] PASSED [ 70%] tests/test_trajectory.py::test_read_write[ncrst-nc] XFAIL (These ref...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-h5] XFAIL (These ref...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xtc] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-trr] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-dcd] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-mdcrd] XFAIL (These ...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-dtr] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xyz] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xyz.gz] XFAIL (These...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-lammpstrj] XFAIL (Th...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-lh5] XFAIL (These re...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-pdb] XFAIL (These re...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-pdb.gz] XFAIL (These...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-ncrst] XFAIL (These ...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-rst7] XFAIL (These r...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-gro] XFAIL (These re...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-nc] XFAIL (These refe...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-h5] XFAIL (These refe...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-xtc] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-trr] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-dcd] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-mdcrd] XFAIL (These r...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-dtr] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-xyz] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-xyz.gz] XFAIL (These ...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-lammpstrj] XFAIL (The...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-lh5] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-pdb] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-pdb.gz] XFAIL (These ...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-ncrst] XFAIL (These r...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-rst7] XFAIL (These re...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-gro] XFAIL (These ref...) [ 73%] tests/test_trajectory.py::test_read_write[gro-nc] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-h5] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-xtc] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-trr] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-dcd] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-mdcrd] SKIPPED (mdcrd ...) [ 73%] tests/test_trajectory.py::test_read_write[gro-dtr] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-xyz] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-xyz.gz] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-lammpstrj] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-lh5] PASSED [ 74%] tests/test_trajectory.py::test_read_write[gro-pdb] PASSED [ 74%] tests/test_trajectory.py::test_read_write[gro-pdb.gz] PASSED [ 74%] tests/test_trajectory.py::test_read_write[gro-ncrst] SKIPPED (ncrst ...) [ 74%] tests/test_trajectory.py::test_read_write[gro-rst7] SKIPPED (rst7 ca...) [ 74%] tests/test_trajectory.py::test_read_write[gro-gro] PASSED [ 74%] tests/test_trajectory.py::test_load[nc] PASSED [ 74%] tests/test_trajectory.py::test_load[h5] PASSED [ 74%] tests/test_trajectory.py::test_load[xtc] PASSED [ 74%] tests/test_trajectory.py::test_load[trr] PASSED [ 74%] tests/test_trajectory.py::test_load[dcd] PASSED [ 74%] tests/test_trajectory.py::test_load[mdcrd] PASSED [ 74%] tests/test_trajectory.py::test_load[dtr] PASSED [ 75%] tests/test_trajectory.py::test_load[xyz] PASSED [ 75%] tests/test_trajectory.py::test_load[xyz.gz] PASSED [ 75%] tests/test_trajectory.py::test_load[lammpstrj] PASSED [ 75%] tests/test_trajectory.py::test_load[lh5] PASSED [ 75%] tests/test_trajectory.py::test_load[pdb] PASSED [ 75%] tests/test_trajectory.py::test_load[pdb.gz] PASSED [ 75%] tests/test_trajectory.py::test_load[ncrst] XFAIL (These reference fi...) [ 75%] tests/test_trajectory.py::test_load[rst7] XFAIL (These reference fil...) [ 75%] tests/test_trajectory.py::test_load[gro] PASSED [ 75%] tests/test_trajectory.py::test_hdf5 PASSED [ 75%] tests/test_trajectory.py::test_center PASSED [ 76%] tests/test_trajectory.py::test_center_aind PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[nc] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[h5] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xtc] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[trr] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[dcd] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[mdcrd] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[dtr] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xyz] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xyz.gz] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[lammpstrj] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[lh5] PASSED [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[pdb] PASSED [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[pdb.gz] PASSED [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[ncrst] XFAIL [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[rst7] XFAIL [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[gro] PASSED [ 77%] tests/test_trajectory.py::test_restrict_atoms PASSED [ 77%] tests/test_trajectory.py::test_restrict_atoms_not_inplace PASSED [ 77%] tests/test_trajectory.py::test_array_vs_matrix PASSED [ 77%] tests/test_trajectory.py::test_pdb_unitcell_loadsave PASSED [ 77%] tests/test_trajectory.py::test_load_combination[nc] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[h5] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[xtc] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[trr] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[dcd] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[mdcrd] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[dtr] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[xyz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[xyz.gz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[lammpstrj] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[lh5] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[pdb] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[pdb.gz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[ncrst] XFAIL (These ...) [ 79%] tests/test_trajectory.py::test_load_combination[rst7] XFAIL (These r...) [ 79%] tests/test_trajectory.py::test_load_combination[gro] PASSED [ 79%] tests/test_trajectory.py::test_no_topology PASSED [ 79%] tests/test_trajectory.py::test_join PASSED [ 79%] tests/test_trajectory.py::test_md_join PASSED [ 79%] tests/test_trajectory.py::test_stack_1 PASSED [ 79%] tests/test_trajectory.py::test_stack_2 PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[nc] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[h5] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[xtc] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[trr] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[dcd] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[mdcrd] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[dtr] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[xyz] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[xyz.gz] XFAIL (This is...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[lammpstrj] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[lh5] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[pdb] XFAIL (PDB Files ...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[pdb.gz] XFAIL (PDB Fil...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[ncrst] XFAIL (These re...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[rst7] XFAIL (These ref...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[gro] XFAIL (This is br...) [ 81%] tests/test_trajectory.py::test_load_frame[nc] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[h5] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[xtc] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[trr] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[dcd] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[mdcrd] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[dtr] XFAIL (DTR doesn't lo...) [ 81%] tests/test_trajectory.py::test_load_frame[xyz] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[xyz.gz] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[lammpstrj] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[lh5] PASSED [ 82%] tests/test_trajectory.py::test_load_frame[pdb] PASSED [ 82%] tests/test_trajectory.py::test_load_frame[pdb.gz] PASSED [ 82%] tests/test_trajectory.py::test_load_frame[ncrst] XFAIL (These refere...) [ 82%] tests/test_trajectory.py::test_load_frame[rst7] XFAIL (These referen...) [ 82%] tests/test_trajectory.py::test_load_frame[gro] XFAIL (Gro doesn't im...) [ 82%] tests/test_trajectory.py::test_load_frame_2eqq PASSED [ 82%] tests/test_trajectory.py::test_iterload[nc] PASSED [ 82%] tests/test_trajectory.py::test_iterload[h5] PASSED [ 82%] tests/test_trajectory.py::test_iterload[xtc] PASSED [ 82%] tests/test_trajectory.py::test_iterload[trr] PASSED [ 82%] tests/test_trajectory.py::test_iterload[dcd] PASSED [ 82%] tests/test_trajectory.py::test_iterload[mdcrd] PASSED [ 83%] tests/test_trajectory.py::test_iterload[dtr] XFAIL (This is broken w...) [ 83%] tests/test_trajectory.py::test_iterload[xyz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[xyz.gz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[lammpstrj] PASSED [ 83%] tests/test_trajectory.py::test_iterload[lh5] PASSED [ 83%] tests/test_trajectory.py::test_iterload[pdb] PASSED [ 83%] tests/test_trajectory.py::test_iterload[pdb.gz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[ncrst] SKIPPED (Only 1 frame...) [ 83%] tests/test_trajectory.py::test_iterload[rst7] SKIPPED (Only 1 frame ...) [ 83%] tests/test_trajectory.py::test_iterload[gro] PASSED [ 83%] tests/test_trajectory.py::test_iterload_skip[nc] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[h5] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[xtc] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[trr] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[dcd] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[mdcrd] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[dtr] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[xyz] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[xyz.gz] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[lammpstrj] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[lh5] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[pdb] XFAIL (PDB Iterloa...) [ 84%] tests/test_trajectory.py::test_iterload_skip[pdb.gz] XFAIL (PDB Iter...) [ 85%] tests/test_trajectory.py::test_iterload_skip[ncrst] XFAIL (These ref...) [ 85%] tests/test_trajectory.py::test_iterload_skip[rst7] XFAIL (These refe...) [ 85%] tests/test_trajectory.py::test_iterload_skip[gro] XFAIL (Not impleme...) [ 85%] tests/test_trajectory.py::test_iterload_chunk_dcd PASSED [ 85%] tests/test_trajectory.py::test_save_load[nc] PASSED [ 85%] tests/test_trajectory.py::test_save_load[h5] PASSED [ 85%] tests/test_trajectory.py::test_save_load[xtc] PASSED [ 85%] tests/test_trajectory.py::test_save_load[trr] PASSED [ 85%] tests/test_trajectory.py::test_save_load[dcd] PASSED [ 85%] tests/test_trajectory.py::test_save_load[mdcrd] PASSED [ 85%] tests/test_trajectory.py::test_save_load[dtr] PASSED [ 86%] tests/test_trajectory.py::test_save_load[xyz] PASSED [ 86%] tests/test_trajectory.py::test_save_load[xyz.gz] PASSED [ 86%] tests/test_trajectory.py::test_save_load[lammpstrj] PASSED [ 86%] tests/test_trajectory.py::test_save_load[lh5] PASSED [ 86%] tests/test_trajectory.py::test_save_load[pdb] PASSED [ 86%] tests/test_trajectory.py::test_save_load[pdb.gz] PASSED [ 86%] tests/test_trajectory.py::test_save_load[ncrst] PASSED [ 86%] tests/test_trajectory.py::test_save_load[rst7] PASSED [ 86%] tests/test_trajectory.py::test_save_load[gro] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[nc] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[h5] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[xtc] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[trr] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[dcd] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[mdcrd] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[dtr] XFAIL (This is b...) [ 87%] tests/test_trajectory.py::test_force_overwrite[xyz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[xyz.gz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[lammpstrj] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[lh5] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[pdb] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[pdb.gz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[ncrst] PASSED [ 88%] tests/test_trajectory.py::test_force_overwrite[rst7] PASSED [ 88%] tests/test_trajectory.py::test_force_overwrite[gro] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[nc] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[h5] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xtc] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[trr] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[dcd] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[mdcrd] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[dtr] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xyz] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xyz.gz] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[lammpstrj] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[lh5] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[pdb] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[pdb.gz] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[ncrst] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[rst7] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[gro] PASSED [ 89%] tests/test_trajectory.py::test_open_and_load PASSED [ 89%] tests/test_trajectory.py::test_length PASSED [ 89%] tests/test_trajectory.py::test_unitcell[nc] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[h5] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[xtc] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[trr] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[dcd] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[mdcrd] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[dtr] XFAIL (dtr seems to nee...) [ 90%] tests/test_trajectory.py::test_unitcell[xyz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[xyz.gz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[lammpstrj] XFAIL (lammpstrj ...) [ 90%] tests/test_trajectory.py::test_unitcell[lh5] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[pdb] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[pdb.gz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[ncrst] XFAIL (ncrst seems to...) [ 90%] tests/test_trajectory.py::test_unitcell[rst7] XFAIL (rst7 seems to n...) [ 91%] tests/test_trajectory.py::test_unitcell[gro] PASSED [ 91%] tests/test_trajectory.py::test_chunk0_iterload PASSED [ 91%] tests/test_trajectory.py::test_hashing PASSED [ 91%] tests/test_trajectory.py::test_smooth PASSED [ 91%] tests/test_trajectory.py::test_make_whole PASSED [ 91%] tests/test_trajectory.py::test_load_pdb_no_standard_names PASSED [ 91%] tests/test_trajectory.py::test_load_with_atom_indices PASSED [ 91%] tests/test_trajectory.py::test_atom_slicing PASSED [ 91%] tests/test_trajectory.py::test_load_with_frame PASSED [ 91%] tests/test_trajectory.py::test_add_remove_atoms PASSED [ 91%] tests/test_trr.py::test_1 PASSED [ 92%] tests/test_trr.py::test_read_stride PASSED [ 92%] tests/test_trr.py::test_read_stride_n_frames PASSED [ 92%] tests/test_trr.py::test_read_stride_offsets PASSED [ 92%] tests/test_trr.py::test_read_stride_n_frames_offsets PASSED [ 92%] tests/test_trr.py::test_read_stride_switching PASSED [ 92%] tests/test_trr.py::test_write_read PASSED [ 92%] tests/test_trr.py::test_read_atomindices_1 PASSED [ 92%] tests/test_trr.py::test_read_atomindices_2 PASSED [ 92%] tests/test_trr.py::test_deficient_shape PASSED [ 92%] tests/test_trr.py::test_ragged_1 PASSED [ 92%] tests/test_trr.py::test_ragged_2 PASSED [ 92%] tests/test_trr.py::test_malformed PASSED [ 93%] tests/test_trr.py::test_tell PASSED [ 93%] tests/test_trr.py::test_seek PASSED [ 93%] tests/test_trr.py::test_get_velocities PASSED [ 93%] tests/test_trr.py::test_get_forces PASSED [ 93%] tests/test_trr.py::test_get_velocities_and_forces PASSED [ 93%] tests/test_trr.py::test_get_velocities_forces_atom_indices_1 PASSED [ 93%] tests/test_trr.py::test_get_velocities_forces_atom_indices_2 PASSED [ 93%] tests/test_trr.py::test_read_velocities_do_not_exist PASSED [ 93%] tests/test_trr.py::test_read_forces_do_not_exist PASSED [ 93%] tests/test_unitcell.py::Test_Unitcell::test_valid[orthogonal] PASSED [ 93%] tests/test_unitcell.py::Test_Unitcell::test_valid[triclinic] PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360[over360] PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360[close] PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_valid_array PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360_array PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_angles_close_array PASSED [ 94%] tests/test_utils.py::test_unitcell_0 PASSED [ 94%] tests/test_utils.py::test_unitcell_1 PASSED [ 94%] tests/test_utils.py::test_ensure_type_1 PASSED [ 94%] tests/test_utils.py::test_ensure_type_2 PASSED [ 94%] tests/test_utils.py::test_ensure_type_25 PASSED [ 94%] tests/test_utils.py::test_ensure_type_3 PASSED [ 94%] tests/test_utils.py::test_ensure_type_4 PASSED [ 95%] tests/test_utils.py::test_ensure_type_5 PASSED [ 95%] tests/test_utils.py::test_ensure_type_6 PASSED [ 95%] tests/test_utils.py::test_ensure_type_7 PASSED [ 95%] tests/test_utils.py::test_ensure_type_8 PASSED [ 95%] tests/test_utils.py::test_ensure_type_9 PASSED [ 95%] tests/test_utils.py::test_ensure_type_10 PASSED [ 95%] tests/test_utils.py::test_ensure_type_11 PASSED [ 95%] tests/test_utils.py::test_ensure_type_12 PASSED [ 95%] tests/test_utils.py::test_ensure_type_13 PASSED [ 95%] tests/test_utils.py::test_ensure_type_14 PASSED [ 95%] tests/test_utils.py::test_ensure_type_15 PASSED [ 96%] tests/test_utils.py::test_delay_import_fail_1 PASSED [ 96%] tests/test_utils.py::test_delay_import PASSED [ 96%] tests/test_utils.py::test_unit_0 PASSED [ 96%] tests/test_utils.py::test_unit_1 PASSED [ 96%] tests/test_utils.py::test_unit_2 PASSED [ 96%] tests/test_utils.py::test_unit_3 PASSED [ 96%] tests/test_xml.py::test_xml PASSED [ 96%] tests/test_xtc.py::test_read_chunk1 PASSED [ 96%] tests/test_xtc.py::test_read_stride PASSED [ 96%] tests/test_xtc.py::test_read_stride_n_frames PASSED [ 96%] tests/test_xtc.py::test_read_stride_offsets PASSED [ 96%] tests/test_xtc.py::test_read_stride_n_frames_offsets PASSED [ 97%] tests/test_xtc.py::test_read_stride_switching_offsets PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_1 PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_w_stride PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_2 PASSED [ 97%] tests/test_xtc.py::test_read_chunk2 PASSED [ 97%] tests/test_xtc.py::test_read_chunk3 PASSED [ 97%] tests/test_xtc.py::test_write_0 PASSED [ 97%] tests/test_xtc.py::test_write_1 PASSED [ 97%] tests/test_xtc.py::test_write_2 PASSED [ 97%] tests/test_xtc.py::test_read_error_0 PASSED [ 97%] tests/test_xtc.py::test_write_error_0 PASSED [ 98%] tests/test_xtc.py::test_read_error_1 PASSED [ 98%] tests/test_xtc.py::test_read_error_2 PASSED [ 98%] tests/test_xtc.py::test_xtc_write_wierd_0 PASSED [ 98%] tests/test_xtc.py::test_tell PASSED [ 98%] tests/test_xtc.py::test_seek PASSED [ 98%] tests/test_xtc.py::test_seek_natoms9 PASSED [ 98%] tests/test_xtc.py::test_seek_out_of_bounds PASSED [ 98%] tests/test_xtc.py::test_ragged_1 PASSED [ 98%] tests/test_xtc.py::test_ragged_2 PASSED [ 98%] tests/test_xtc.py::test_short_traj PASSED [ 98%] tests/test_xtc.py::test_flush PASSED [ 98%] tests/test_xyz.py::test_read_0 PASSED [ 99%] tests/test_xyz.py::test_read_1 PASSED [ 99%] tests/test_xyz.py::test_read_gz PASSED [ 99%] tests/test_xyz.py::test_read_write PASSED [ 99%] tests/test_xyz.py::test_mdwrite PASSED [ 99%] tests/test_xyz.py::test_multiread PASSED [ 99%] tests/test_xyz.py::test_seek PASSED [ 99%] tests/test_xyz.py::test_len PASSED [ 99%] tests/test_zipped.py::test_read_gz PASSED [ 99%] tests/test_zipped.py::test_write_gz PASSED [ 99%] tests/test_zipped.py::test_read_bz2 PASSED [ 99%] tests/test_zipped.py::test_write_bz2 PASSED [100%] =============================== warnings summary =============================== tests/test_distance.py::Test_Distance::test_6 :491: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ SKIPPED [1] tests/test_dihedral.py:56: pymol executable not found SKIPPED [1] tests/test_dihedral.py:181: pymol executable not found SKIPPED [15] tests/test_docstrings.py:38: Skip checking certain modules' docstrings SKIPPED [1] tests/test_geometry.py:300: Not doing performance testing SKIPPED [1] tests/test_geometry.py:322: Not doing performance testing SKIPPED [1] tests/test_hdf5.py:105: requires openmm.units SKIPPED [1] tests/test_hdf5.py:156: requires openmm.units SKIPPED [1] tests/test_hdf5.py:223: requires openmm.units SKIPPED [1] tests/test_mol2.py:65: Requires obabel SKIPPED [1] tests/test_netcdf.py:274: This test requires cpptraj from AmberTools to be installed (http://ambermd.org) SKIPPED [1] tests/test_nmr.py:11: SPARTA+ binary not found SKIPPED [1] tests/test_nmr.py:26: PPM binary not found SKIPPED [1] tests/test_nmr.py:42: SHIFTX2 binary not found or running on travis. SKIPPED [2] tests/test_psf.py:93: This test requires the VMD executable: http://www.ks.uiuc.edu/Research/vmd/ SKIPPED [1] tests/test_rdf.py:64: Binning does not match up with gromacs currently. SKIPPED [1] tests/test_rdf.py:200: Binning does not match up with gromacs currently. SKIPPED [1] tests/test_reporter.py:58: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_reporter.py:145: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_reporter.py:245: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_selection.py:267: failed to parse selection SKIPPED [1] tests/test_thermodynamic_properties.py:161: Thermal expansion test doesn't work. SKIPPED [1] tests/test_topology.py:66: needs OpenMM SKIPPED [1] tests/test_topology.py:83: needs OpenMM SKIPPED [1] tests/test_topology.py:93: needs OpenMM SKIPPED [1] tests/test_topology.py:102: needs OpenMM SKIPPED [1] tests/test_topology.py:112: needs OpenMM SKIPPED [1] tests/test_topology.py:119: requires openmm >= 8.2 SKIPPED [1] tests/test_topology.py:295: needs OpenMM SKIPPED [1] tests/test_trajectory.py:129: xyz does not store box information SKIPPED [1] tests/test_trajectory.py:129: xyz.gz does not store box information SKIPPED [1] tests/test_trajectory.py:129: lh5 does not store box information SKIPPED [1] tests/test_trajectory.py:129: pdb does not store box information SKIPPED [1] tests/test_trajectory.py:129: pdb.gz does not store box information SKIPPED [1] tests/test_trajectory.py:225: mdcrd can only store rectilinear boxes SKIPPED [1] tests/test_trajectory.py:223: ncrst can only store 1 frame per file SKIPPED [1] tests/test_trajectory.py:223: rst7 can only store 1 frame per file SKIPPED [14] tests/test_trajectory.py:247: mdcrd can only store rectilinear boxes SKIPPED [14] tests/test_trajectory.py:245: ncrst can only store 1 frame per file SKIPPED [14] tests/test_trajectory.py:245: rst7 can only store 1 frame per file SKIPPED [4] tests/test_trajectory.py:255: dtr needs to write unitcells SKIPPED [4] tests/test_trajectory.py:255: lammpstrj needs to write unitcells SKIPPED [2] tests/test_trajectory.py:641: Only 1 frame per file format XFAIL tests/test_trajectory.py::test_read_path[ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_path[rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-nc] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-h5] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xtc] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-trr] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-dcd] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-mdcrd] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-dtr] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xyz] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xyz.gz] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-lammpstrj] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-lh5] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-pdb] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-pdb.gz] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-gro] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-nc] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-h5] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xtc] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-trr] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-dcd] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-mdcrd] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-dtr] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xyz] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xyz.gz] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-lammpstrj] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-lh5] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-pdb] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-pdb.gz] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-gro] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load[ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load[rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_float_atom_indices_exception[ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_float_atom_indices_exception[rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_combination[ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_combination[rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[xyz.gz] - This is broken XFAIL tests/test_trajectory.py::test_seek_read_mode[pdb] - PDB Files don't support seeking XFAIL tests/test_trajectory.py::test_seek_read_mode[pdb.gz] - PDB Files don't support seeking XFAIL tests/test_trajectory.py::test_seek_read_mode[ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[gro] - This is broken XFAIL tests/test_trajectory.py::test_load_frame[dtr] - DTR doesn't load a single frame properly XFAIL tests/test_trajectory.py::test_load_frame[ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_frame[rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_frame[gro] - Gro doesn't implement seek XFAIL tests/test_trajectory.py::test_iterload[dtr] - This is broken with dtr XFAIL tests/test_trajectory.py::test_iterload_skip[pdb] - PDB Iterloads an extra frame!! XFAIL tests/test_trajectory.py::test_iterload_skip[pdb.gz] - PDB Iterloads an extra frame!! XFAIL tests/test_trajectory.py::test_iterload_skip[ncrst] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_iterload_skip[rst7] - These reference files don't exist yet XFAIL tests/test_trajectory.py::test_iterload_skip[gro] - Not implemented for some reason XFAIL tests/test_trajectory.py::test_force_overwrite[dtr] - This is broken with dtr XFAIL tests/test_trajectory.py::test_unitcell[dtr] - dtr seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[lammpstrj] - lammpstrj seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[ncrst] - ncrst seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[rst7] - rst7 seems to need unit vectors = 987 passed, 103 skipped, 24 deselected, 61 xfailed, 1 warning in 494.26s (0:08:14) = lugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) rm -fr -- /tmp/dh-xdg-rundir-ssixJ323 create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-mdtraj.substvars rm -fr -- debian/.debhelper/generated/python3-mdtraj/ debian/python3-mdtraj/ debian/tmp/ dh_auto_install -a -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/mdtraj-1.11.1.post1/debian/tmp pybuild --install -i python{version} -p 3.14 --parallel=6 I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/copyright debian/python3-mdtraj/usr/share/doc/python3-mdtraj/copyright dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.trimmed debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.binnmu debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian.amd64 dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/man/man1/ install -p -m0644 ./debian/mdconvert-mdtraj.1 debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 install -m0755 -d debian/python3-mdtraj/usr/share/man/man1/ install -p -m0644 ./debian/mdinspect.1 debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 mv debian/python3-mdtraj/usr/share/man/man1/mdinspect.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 mv debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:87: version: 7.20260623 D: dh_python3 dh_python3:88: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:89: options: DHPythonOptions(O=['--buildsystem=pybuild'], accept_upstream_versions=False, arch=True, clean_dbg_pkg=True, compile_all=False, depends=[], depends_section=[], guess_deps=True, ignore_shebangs=False, no_ext_rename=False, no_package=[], no_shebang_rewrite=False, package=[], private_dir=None, recommends=[], recommends_section=[], regexpr=[], remaining_packages=False, requires=[], shebang=None, skip_private=False, suggests=[], suggests_section=[], verbose=True, vrange=None, write_log=False) D: dh_python3 dh_python3:90: supported Python versions: 3.14 (default=3.14) D: dh_python3 debhelper:229: source=mdtraj, binary packages=['python3-mdtraj'] D: dh_python3 dh_python3:117: processing package python3-mdtraj... D: dh_python3 fs:60: moving files from debian/python3-mdtraj/usr/lib/python3.14/dist-packages to debian/python3-mdtraj/usr/lib/python3/dist-packages/ D: dh_python3 fs:180: Writing INSTALLER in debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.1.post1.dist-info D: dh_python3 fs:192: Deleting WHEEL and RECORD in debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.1.post1.dist-info I: dh_python3 tools:129: replacing shebang in debian/python3-mdtraj/usr/bin/mdinspect I: dh_python3 tools:129: replacing shebang in debian/python3-mdtraj/usr/bin/mdconvert-mdtraj D: dh_python3 fs:397: package python3-mdtraj details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.1.post1.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.14')}, 'ext_stableabi': set(), 'ext_no_version': set()} D: dh_python3 depends:148: generating dependencies for package python3-mdtraj D: dh_python3 pydist:237: trying to find dependency for numpy~=2.0 (python=None) D: dh_python3 pydist:281: dependency: module numpy is known to pydist: [PyDist(name='numpy', versions={Version('3.14')}, dependency='python3-numpy', standard=None, rules=[])] D: dh_python3 pydist:358: dependency: included in build-deps with limits D: dh_python3 pydist:237: trying to find dependency for scipy (python=None) D: dh_python3 pydist:281: dependency: module scipy is known to pydist: [PyDist(name='scipy', versions={Version('3.14')}, dependency='python3-scipy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pyparsing (python=None) D: dh_python3 pydist:281: dependency: module pyparsing is known to pydist: [PyDist(name='pyparsing', versions={Version('3.14')}, dependency='python3-pyparsing', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for packaging (python=None) D: dh_python3 pydist:281: dependency: module packaging is known to pydist: [PyDist(name='packaging', versions={Version('3.14')}, dependency='python3-packaging', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 depends:330: D={'python3:any', 'python3-packaging', 'python3 (>= 3.14~)', 'python3-pyparsing', 'python3-numpy (>= 2.0.0~)', 'python3 (<< 3.15)', 'python3-scipy'}; R=[]; S=[]; E=[], B=[]; RT=[] debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.1.post1' # setup.py builds the static lib libtheobald.a for each python version # but dh_python3 can't tell the difference between the different builds, # since py3.11 compiles libtheobald.o with -fwrapv, where py3.12 uses -fno-strict-overflow # So clean up manually (assume the binary difference is not an issue) rm -f debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib/libtheobald.a for d in debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib; do if [-d $d]; then rmdir -p --ignore-fail-on-non-empty $d; fi; done /bin/sh: 1: [-d: not found make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.11.1.post1' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-mdtraj chmod a-x usr/share/doc/python3-mdtraj/changelog.Debian usr/share/doc/python3-mdtraj/changelog.Debian.amd64 usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 gzip -9nf usr/share/doc/python3-mdtraj/changelog.Debian usr/share/doc/python3-mdtraj/changelog.Debian.amd64 usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 cd '/build/reproducible-path/mdtraj-1.11.1.post1' dh_fixperms -a -O--buildsystem=pybuild find debian/python3-mdtraj ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-mdtraj/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-mdtraj/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-mdtraj/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-mdtraj/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug -- debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-314-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug chmod 0644 -- debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/51/7aa40f7d6fdb8a6b4449a6c5bbd6f3341908f4.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/51/7aa40f7d6fdb8a6b4449a6c5bbd6f3341908f4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/51/7aa40f7d6fdb8a6b4449a6c5bbd6f3341908f4.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/09/5d3606a39ac25c9be78703e27150e6c6d1c828.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/09/5d3606a39ac25c9be78703e27150e6c6d1c828.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/09/5d3606a39ac25c9be78703e27150e6c6d1c828.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/13 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/13/102c923f08b394c94b746d5f97645c9b75ed24.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/13/102c923f08b394c94b746d5f97645c9b75ed24.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/13/102c923f08b394c94b746d5f97645c9b75ed24.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/ce/48ec2ec440cf1e71e0940f6d7fa67295355011.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/ce/48ec2ec440cf1e71e0940f6d7fa67295355011.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/ce/48ec2ec440cf1e71e0940f6d7fa67295355011.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/58/662e40f1c6e5197d38d9713aa1e6832594ea1c.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/58/662e40f1c6e5197d38d9713aa1e6832594ea1c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/58/662e40f1c6e5197d38d9713aa1e6832594ea1c.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/8e objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/8e/0cd0aded6ce46fd4207ccf5a8c38c6b694da86.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/8e/0cd0aded6ce46fd4207ccf5a8c38c6b694da86.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/8e/0cd0aded6ce46fd4207ccf5a8c38c6b694da86.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4f objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4f/2a953d2cbb3ccd5fbd35595e0f271d37c33c5f.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4f/2a953d2cbb3ccd5fbd35595e0f271d37c33c5f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4f/2a953d2cbb3ccd5fbd35595e0f271d37c33c5f.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/211638ba403ddb3f0787e6519e8a3c9c900e0c.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/211638ba403ddb3f0787e6519e8a3c9c900e0c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/211638ba403ddb3f0787e6519e8a3c9c900e0c.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a0 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a0/550dfebb1978b87746efa7c666ac76c62d8b6b.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a0/550dfebb1978b87746efa7c666ac76c62d8b6b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a0/550dfebb1978b87746efa7c666ac76c62d8b6b.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/77/3bd75c61c76c5b7b5b99f431ed893dae4dea9e.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/77/3bd75c61c76c5b7b5b99f431ed893dae4dea9e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/77/3bd75c61c76c5b7b5b99f431ed893dae4dea9e.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-314-x86_64-linux-gnu.so strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/core/lib/libtheobald.a install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-mdtraj/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-mdtraj/usr/lib/debug install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/share/doc ln -s python3-mdtraj debian/.debhelper/python3-mdtraj/dbgsym-root/usr/share/doc/python3-mdtraj-dbgsym install -m0755 -d debian/.debhelper/python3-mdtraj dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-mdtraj/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN dpkg-shlibdeps -Tdebian/python3-mdtraj.substvars debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-314-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-314-x86_64-linux-gnu.so dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/postinst cat debian/python3-mdtraj.postinst.debhelper >> debian/python3-mdtraj/DEBIAN/postinst chmod 0755 -- debian/python3-mdtraj/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/prerm cat debian/python3-mdtraj.prerm.debhelper >> debian/python3-mdtraj/DEBIAN/prerm chmod 0755 -- debian/python3-mdtraj/DEBIAN/prerm dh_numpy3 -a -O--buildsystem=pybuild Possible precedence problem between ! and pattern match (m//) at /usr/bin/dh_numpy3 line 68. mv debian/python3-mdtraj.substvars.new debian/python3-mdtraj.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN echo misc:Depends= >> debian/python3-mdtraj.substvars echo misc:Pre-Depends= >> debian/python3-mdtraj.substvars install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/.debhelper/python3-mdtraj/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-mdtraj-dbgsym -DDepends="python3-mdtraj (= \${binary:Version})" -DDescription="debug symbols for python3-mdtraj" -DBuild-Ids="095d3606a39ac25c9be78703e27150e6c6d1c828 13102c923f08b394c94b746d5f97645c9b75ed24 4f2a953d2cbb3ccd5fbd35595e0f271d37c33c5f 517aa40f7d6fdb8a6b4449a6c5bbd6f3341908f4 58662e40f1c6e5197d38d9713aa1e6832594ea1c 65211638ba403ddb3f0787e6519e8a3c9c900e0c 773bd75c61c76c5b7b5b99f431ed893dae4dea9e 8e0cd0aded6ce46fd4207ccf5a8c38c6b694da86 a0550dfebb1978b87746efa7c666ac76c62d8b6b ce48ec2ec440cf1e71e0940f6d7fa67295355011" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/python3-mdtraj chmod 0644 -- debian/python3-mdtraj/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN cd debian/python3-mdtraj >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-mdtraj/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN cd debian/.debhelper/python3-mdtraj/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-mdtraj .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-mdtraj/dbgsym-root .. dpkg-deb: building package 'python3-mdtraj-dbgsym' in '../python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb'. dpkg-deb: building package 'python3-mdtraj' in '../python3-mdtraj_1.11.1.post1-3+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../mdtraj_1.11.1.post1-3+b1_amd64.buildinfo dpkg-genchanges --build=any -O../mdtraj_1.11.1.post1-3+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from /build/reproducible-path/mdtraj-1.11.1.post1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-09-11T07:27:32Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 11 Sep 2026 07:27:32 +0000 | +------------------------------------------------------------------------------+ mdtraj_1.11.1.post1-3+b1_amd64.changes: --------------------------------------- Format: 1.8 Date: Tue, 03 Mar 2026 19:05:09 +0000 Source: mdtraj (1.11.1.post1-3) Binary: python3-mdtraj python3-mdtraj-dbgsym Binary-Only: yes Architecture: amd64 Version: 1.11.1.post1-3+b1 Distribution: unstable Urgency: low Maintainer: Debichem Team Changed-By: amd64 / i386 Build Daemon (x86-ubc-01) Description: python3-mdtraj - Read, write and analyze MD trajectories in Python Changes: mdtraj (1.11.1.post1-3+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild with Python 3.14 only Checksums-Sha1: 40e880f542803731d0bd3510fdebf827f3a680e0 10350 mdtraj_1.11.1.post1-3+b1_amd64.buildinfo 3fc298baa7944bc17dbc8a3e8769cc26dc7743a9 6115572 python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb daa732669ed3b6cda70925f08d710d9c5fec20b2 1047992 python3-mdtraj_1.11.1.post1-3+b1_amd64.deb Checksums-Sha256: 26e2fe87f95e8d7a66ec87efda0f6dd77bef2a870ed310e10c876a37fe7ce2e9 10350 mdtraj_1.11.1.post1-3+b1_amd64.buildinfo 5e8153e9cd2918018888a7281660d7805080c7409ef9546ade5546078d2143d2 6115572 python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb 42e9cea176d18bf305deec614338d2b31afdd7bb23910a7e084810742fc78f90 1047992 python3-mdtraj_1.11.1.post1-3+b1_amd64.deb Files: 5426e714b0d3b3c60f8727dd4c7bcf49 10350 python optional mdtraj_1.11.1.post1-3+b1_amd64.buildinfo 0a523ee7ce5e42f6baa608b1b4d0cd63 6115572 debug optional python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb 1ffb5f02b2542a8e03911ad5c72b6508 1047992 python optional python3-mdtraj_1.11.1.post1-3+b1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 11 Sep 2026 07:27:33 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mdtraj (1.11.1.post1-3) Binary: python3-mdtraj python3-mdtraj-dbgsym Architecture: amd64 Version: 1.11.1.post1-3+b1 Binary-Only-Changes: mdtraj (1.11.1.post1-3+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild with Python 3.14 only . -- amd64 / i386 Build Daemon (x86-ubc-01) Tue, 03 Mar 2026 19:05:09 +0000 Checksums-Md5: 0a523ee7ce5e42f6baa608b1b4d0cd63 6115572 python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb 1ffb5f02b2542a8e03911ad5c72b6508 1047992 python3-mdtraj_1.11.1.post1-3+b1_amd64.deb Checksums-Sha1: 3fc298baa7944bc17dbc8a3e8769cc26dc7743a9 6115572 python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb daa732669ed3b6cda70925f08d710d9c5fec20b2 1047992 python3-mdtraj_1.11.1.post1-3+b1_amd64.deb Checksums-Sha256: 5e8153e9cd2918018888a7281660d7805080c7409ef9546ade5546078d2143d2 6115572 python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb 42e9cea176d18bf305deec614338d2b31afdd7bb23910a7e084810742fc78f90 1047992 python3-mdtraj_1.11.1.post1-3+b1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 11 Sep 2026 07:27:31 +0000 Build-Path: /build/reproducible-path/mdtraj-1.11.1.post1 Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3+b1), binutils (= 2.47-2), binutils-common (= 2.47-2), binutils-x86-64-linux-gnu (= 2.47-2), bsdextrautils (= 2.42.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260816), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-2), cpp-16-x86-64-linux-gnu (= 16.2.0-2), cpp-x86-64-linux-gnu (= 4:16.1.0-3), cython3 (= 3.1.6+dfsg-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.24), dh-autoreconf (= 22), dh-python (= 7.20260623), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), docutils-common (= 0.23+dfsg-2), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-2), fonts-mathjax (= 2.7.9+dfsg-1), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-2), g++-16-x86-64-linux-gnu (= 16.2.0-2), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-2), gcc-16-base (= 16.2.0-2), gcc-16-x86-64-linux-gnu (= 16.2.0-2), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-2), libatomic1 (= 16.2.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.47-2), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.2-4), libblosc1 (= 1.21.5+ds-2+b2), libblosc2-7 (= 2.23.1+ds-2), libbrotli1 (= 1.2.0-4+b1), libbsd0 (= 0.12.2-3), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-4), libc-dev-bin (= 2.43-4), libc-gconv-modules-extra (= 2.43-4), libc6 (= 2.43-4), libc6-dev (= 2.43-4), libcap-ng0 (= 0.9.5-1), libcc1-0 (= 16.2.0-2), libcom-err2 (= 1.47.4-1+b1), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-2), libctf0 (= 2.47-2), libcurl4-gnutls (= 8.22.0-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.196-1), libexpat1 (= 2.8.4-1), libexpat1-dev (= 2.8.4-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-2), libgcc-s1 (= 16.2.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran5 (= 16.2.0-2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-2), libgprofng0 (= 2.47-2), libgssapi-krb5-2 (= 1.22.1-3), libhdf5-320 (= 2.2.0+repack-4), libhdf5-hl-320 (= 2.2.0+repack-4), libhogweed6t64 (= 3.10.2-1+b1), libhwasan0 (= 16.2.0-2), libidn2-0 (= 2.3.8-5), libisl23 (= 0.28-1), libitm1 (= 16.2.0-2), libjansson4 (= 2.15.1-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-sphinxdoc (= 9.1.0-7), libjson-perl (= 4.10000-1), libk5crypto3 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), liblapack3 (= 3.12.1-8), libldap2 (= 2.6.14+dfsg-2), liblsan0 (= 16.2.0-2), liblz4-1 (= 1.10.0-10), liblzma5 (= 5.8.3-1), liblzo2-2 (= 2.10-3+b2), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-4), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20260608-2), libnetcdf22 (= 1:4.10.1-1+b1), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libnorm1t64 (= 1.5.9+dfsg-4+b1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-2), libperl5.42 (= 5.42.3-1), libpgm-5.3-0t64 (= 5.3.128~dfsg-3), libpipeline1 (= 1.5.8-3), libpsl5t64 (= 0.23.3-1), libpython3-all-dev (= 3.14.7-3), libpython3-dev (= 3.14.7-3), libpython3-stdlib (= 3.14.7-3), libpython3.14 (= 3.14.7-1), libpython3.14-dev (= 3.14.7-1), libpython3.14-minimal (= 3.14.7-1), libpython3.14-stdlib (= 3.14.7-1), libqhull-r8.0 (= 2020.2-9), libquadmath0 (= 16.2.0-2), libreadline8t64 (= 8.3-4), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1), libselinux1 (= 3.11-2), libsframe3 (= 2.47-2), libsmartcols1 (= 2.42.2-4), libsnappy1v5 (= 1.2.2-2+b2), libsodium26 (= 1.0.22-2), libsqlite3-0 (= 3.53.4-2), libssh2-1t64 (= 1.11.1-6), libssl3t64 (= 3.6.4-1), libstdc++-16-dev (= 16.2.0-2), libstdc++6 (= 16.2.0-2), libsystemd0 (= 262~rc1-2), libsz2 (= 1.1.7-1), libtasn1-6 (= 4.21.0-2+b1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-2), libtsan2 (= 16.2.0-2), libubsan1 (= 16.2.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262~rc1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-4), libxml2-16 (= 2.15.3+dfsg-1+b1), libxxhash0 (= 0.8.3-2+b2), libzmq5 (= 4.3.5-1+b7), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.1.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), netbase (= 6.6), openssl (= 3.6.4-1), openssl-provider-legacy (= 3.6.4-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), po-debconf (= 1.0.22), pybuild-plugin-pyproject (= 7.20260623), python-babel-localedata (= 2.17.0-2), python-tables-data (= 3.11.1-3), python-tinycss2-common (= 1.5.1-5), python3 (= 3.14.7-3), python3-alabaster (= 1.0.0-1), python3-all (= 3.14.7-3), python3-all-dev (= 3.14.7-3), python3-attr (= 26.1.0-1), python3-autocommand (= 2.2.2-4), python3-babel (= 2.17.0-2), python3-bleach (= 6.3.0-1), python3-bs4 (= 4.15.0-1), python3-build (= 1.5.1-1), python3-certifi (= 2026.7.22+ds-1), python3-cffi-backend (= 2.1.1-1), python3-cftime (= 1.6.5-1+b1), python3-chardet (= 5.2.0+dfsg-2), python3-charset-normalizer (= 3.4.7-2), python3-cpuinfo (= 9.0.0+git20221119-3), python3-dateutil (= 2.9.0-5), python3-decorator (= 5.3.1-1), python3-defusedxml (= 0.7.1-3), python3-dev (= 3.14.7-3), python3-docutils (= 0.23+dfsg-2), python3-fastjsonschema (= 2.22.1-1), python3-gsd (= 5.0.1-2), python3-html5lib (= 1.2-4), python3-idna (= 3.19-1), python3-imagesize (= 2.0.1-1), python3-inflect (= 7.5.0-2), python3-iniconfig (= 2.1.0-2), python3-installer (= 1.0.1+dfsg1-2), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-jinja2 (= 3.1.6-3), python3-jsonschema (= 4.26.0-2), python3-jsonschema-specifications (= 2023.12.1-6), python3-jupyter-client (= 8.8.0-1), python3-jupyter-core (= 5.9.1-1), python3-jupyterlab-pygments (= 0.2.2-3), python3-markupsafe (= 3.0.3-2+b1), python3-minimal (= 3.14.7-3), python3-mistune (= 3.1.4-1), python3-more-itertools (= 11.1.0-2), python3-nbclient (= 0.11.0-1), python3-nbconvert (= 7.17.1-2), python3-nbformat (= 5.10.4-3), python3-nbsphinx (= 0.9.5+ds-3), python3-netcdf4 (= 1.7.4-1), python3-networkx (= 3.4.2-6), python3-numexpr (= 2.14.2-1), python3-numpy (= 1:2.4.6+ds-4), python3-numpy-dev (= 1:2.4.6+ds-4), python3-packaging (= 26.2-2), python3-pandas (= 2.3.3+dfsg-3), python3-pandas-lib (= 2.3.3+dfsg-3+b1), python3-pandocfilters (= 1.5.1-1), python3-pkg-resources (= 80.9.0-2), python3-platformdirs (= 4.10.0-1), python3-pluggy (= 1.6.0-2), python3-psutil (= 7.1.0-1), python3-pygments (= 2.20.0+dfsg-2), python3-pyparsing (= 3.3.2-2), python3-pyproject-hooks (= 1.2.0-2), python3-pytest (= 9.1.1-1), python3-pytest-rerunfailures (= 16.4-1), python3-pytz (= 2026.3.post1-1), python3-referencing (= 0.37.0+~2025.1.1-3), python3-requests (= 2.34.2-1), python3-roman-numerals (= 4.1.0-1), python3-rpds-py (= 0.30.0-2), python3-scipy (= 1.17.1-5), python3-setuptools (= 80.9.0-2), python3-snowballstemmer (= 3.1.1-1), python3-soupsieve (= 2.8.4-1), python3-sphinx (= 9.1.0-7), python3-tables (= 3.11.1-3), python3-tables-lib (= 3.11.1-3), python3-tinycss2 (= 1.5.1-5), python3-tornado (= 6.5.5-4), python3-traitlets (= 5.14.3+really5.14.3-5), python3-typeguard (= 4.4.4-3), python3-typing-extensions (= 4.16.0-5), python3-urllib3 (= 2.7.0-3), python3-versioneer (= 0.29-3), python3-webencodings (= 0.5.1-6), python3-wheel (= 0.47.0-1), python3-zipp (= 3.23.0-1), python3-zmq (= 27.1.0-1+b1), python3.14 (= 3.14.7-1), python3.14-dev (= 3.14.7-1), python3.14-minimal (= 3.14.7-1), readline-common (= 8.3-4), sed (= 4.9-3), sensible-utils (= 0.0.26), sgml-base (= 1.31+nmu1), sphinx-common (= 9.1.0-7), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-5), tzdata (= 2026c-1), util-linux (= 2.42.2-4), xml-core (= 0.21), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1772564709" +------------------------------------------------------------------------------+ | Package contents Fri, 11 Sep 2026 07:27:33 +0000 | +------------------------------------------------------------------------------+ python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb ------------------------------------------------- new Debian package, version 2.0. size 6115572 bytes: control archive=1060 bytes. 779 bytes, 12 lines control 1151 bytes, 11 lines md5sums Package: python3-mdtraj-dbgsym Source: mdtraj (1.11.1.post1-3) Version: 1.11.1.post1-3+b1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debichem Team Installed-Size: 6419 Depends: python3-mdtraj (= 1.11.1.post1-3+b1) Section: debug Priority: optional Description: debug symbols for python3-mdtraj Build-Ids: 095d3606a39ac25c9be78703e27150e6c6d1c828 13102c923f08b394c94b746d5f97645c9b75ed24 4f2a953d2cbb3ccd5fbd35595e0f271d37c33c5f 517aa40f7d6fdb8a6b4449a6c5bbd6f3341908f4 58662e40f1c6e5197d38d9713aa1e6832594ea1c 65211638ba403ddb3f0787e6519e8a3c9c900e0c 773bd75c61c76c5b7b5b99f431ed893dae4dea9e 8e0cd0aded6ce46fd4207ccf5a8c38c6b694da86 a0550dfebb1978b87746efa7c666ac76c62d8b6b ce48ec2ec440cf1e71e0940f6d7fa67295355011 drwxr-xr-x root/root 0 2026-03-03 19:05 ./ drwxr-xr-x root/root 0 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536752 2026-03-03 19:05 ./usr/lib/debug/.build-id/ce/48ec2ec440cf1e71e0940f6d7fa67295355011.debug drwxr-xr-x root/root 0 2026-03-03 19:05 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-03-03 19:05 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 70384 2026-03-03 19:05 ./usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug drwxr-xr-x root/root 0 2026-03-03 19:05 ./usr/share/ drwxr-xr-x root/root 0 2026-03-03 19:05 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-03-03 19:05 ./usr/share/doc/python3-mdtraj-dbgsym -> python3-mdtraj python3-mdtraj_1.11.1.post1-3+b1_amd64.deb ------------------------------------------ new Debian package, version 2.0. size 1047992 bytes: control archive=4412 bytes. 1502 bytes, 32 lines control 10556 bytes, 113 lines md5sums 283 bytes, 12 lines * postinst #!/bin/sh 421 bytes, 12 lines * prerm #!/bin/sh Package: python3-mdtraj Source: mdtraj (1.11.1.post1-3) Version: 1.11.1.post1-3+b1 Architecture: amd64 Maintainer: Debichem Team Installed-Size: 4582 Depends: python3 (<< 3.15), python3 (>= 3.14~), python3-numpy (>= 2.0.0~), python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.43), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), python3-networkx, python3-pandas, python3-tables Recommends: python3-gsd, python3-netcdf4 Suggests: python-mdtraj-doc Section: python Priority: optional Homepage: https://mdtraj.org/ Description: Read, write and analyze MD trajectories in Python Read, write and analyze MD trajectories with only a few lines of Python code. . MDTraj is a Python library that allows users to manipulate molecular dynamics (MD) trajectories. Features include: * Wide MD format support, including pdb, xtc, trr, dcd, binpos, netcdf, mdcrd, prmtop, and more. * Extremely fast RMSD calculations (4x the speed of the original Theobald QCP). * Extensive analysis functions including those that compute bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR observables. * Lightweight, Pythonic API. . MDTraj includes a command-line application, mdconvert-mdtraj, for converting trajectories between formats. . 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./usr/share/man/man1/mdconvert-mdtraj.1.gz -rw-r--r-- root/root 597 2026-03-03 19:05 ./usr/share/man/man1/mdinspect.1.gz +------------------------------------------------------------------------------+ | Post Build Fri, 11 Sep 2026 07:27:34 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 11 Sep 2026 07:27:34 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 11 Sep 2026 07:27:36 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 200788 Build-Time: 549 Distribution: unstable Host Architecture: amd64 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdBhctHn/inputs/mdtraj_1.11.1.post1-3.dsc Machine Architecture: amd64 Package: mdtraj Package-Time: 563 Source-Version: 1.11.1.post1-3 Space: 200788 Status: successful Version: 1.11.1.post1-3+b1 -------------------------------------------------------------------------------- Finished at 2026-09-11T07:27:32Z Build needed 00:09:23, 200788k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdBhctHn/out checking python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb: size differs for python3-mdtraj-dbgsym_1.11.1.post1-3+b1_amd64.deb