=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdCaDjuJ/inputs/consensuscore_1.1.1+dfsg-9+b2_amd64.buildinfo Source: consensuscore Version: 1.1.1+dfsg-9 rebuilderd-worker node: osuosl41-amd64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 11 Sep 2026 12:05:12 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [60.7 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [229 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [1,840 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [219 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [307 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,412 B] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,876 B] Get:18 https://deb.debian.org/debian forky/main Sources [11.2 MB] Get:19 https://deb.debian.org/debian sid/main Sources [11.9 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.6 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [430 kB] Fetched 35.7 MB in 3s (10.3 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg-9.dsc' consensuscore_1.1.1+dfsg-9.dsc 2374 SHA256:a0bcbadeeffeec940fb157763b05a2dbba976457217dc53b04f67799f52206bf 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg.orig.tar.xz' consensuscore_1.1.1+dfsg.orig.tar.xz 363936 SHA256:47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg-9.debian.tar.xz' consensuscore_1.1.1+dfsg-9.debian.tar.xz 10340 SHA256:4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 consensuscore_1.1.1+dfsg.orig.tar.xz 4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e consensuscore_1.1.1+dfsg-9.debian.tar.xz a0bcbadeeffeec940fb157763b05a2dbba976457217dc53b04f67799f52206bf consensuscore_1.1.1+dfsg-9.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 11 Sep 2026 12:05:16 +0000 | +------------------------------------------------------------------------------+ Rebuilding consensuscore=1.1.1+dfsg-9 in /srv/rebuilderd/tmp/rebuilderdCaDjuJ/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdCaDjuJ/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdCaDjuJ/inputs/consensuscore_1.1.1+dfsg-9+b2_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdCaDjuJ/inputs/consensuscore_1.1.1+dfsg-9+b2_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/consensuscore-1.1.1+dfsg I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 Packages [10.7 MB] Fetched 21.9 MB in 2s (9914 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260904T025144Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.4.0-1 [37.1 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.6+b2 [2632 B] Get:3 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.6.0-1 [24.7 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14.2 [88.0 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.90.0.2+nmu1 [3200 B] Get:11 http://deb.debian.org/debian unstable/main amd64 libboost1.90-dev amd64 1.90.0-6.1+b1 [11.3 MB] Get:12 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Get:13 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6+b2 [39.9 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libdebconfclient0 amd64 0.283 [7572 B] Get:16 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.10-1 [3142 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11+b1 [709 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.92 [123 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.24 [93.3 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.31 [26.1 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dh-python all 7.20260623 [114 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.4-1 [130 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.8.4-1 [186 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.11.0-2 [782 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 cpp-16 amd64 16.2.0-2 [1272 B] Get:35 http://deb.debian.org/debian unstable/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-2 [76.0 MB] Get:36 http://deb.debian.org/debian unstable/main amd64 g++-16 amd64 16.2.0-2 [35.2 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-2 [82.0 MB] Get:38 http://deb.debian.org/debian unstable/main amd64 gcc-16 amd64 16.2.0-2 [535 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 gcc-16-base amd64 16.2.0-2 [38.4 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-2 [87.1 MB] Get:41 http://deb.debian.org/debian unstable/main amd64 libasan8 amd64 16.2.0-2 [2889 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libatomic1 amd64 16.2.0-2 [10.4 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libcc1-0 amd64 16.2.0-2 [46.1 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libgcc-16-dev amd64 16.2.0-2 [2782 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libgcc-s1 amd64 16.2.0-2 [74.1 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.2.0-2 [878 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libgomp1 amd64 16.2.0-2 [151 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libhwasan0 amd64 16.2.0-2 [1580 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libitm1 amd64 16.2.0-2 [27.0 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 liblsan0 amd64 16.2.0-2 [1281 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:52 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:53 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:54 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:55 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:56 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:57 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b2 [560 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.14-1 [149 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69+nmu1 [37.1 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libcrypt1 amd64 1:4.5.2+20251210-1 [100 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 9.1.0-7 [46.1 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:75 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.3-1 [102 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 2.42.3-1 [185 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.3-1 [332 kB] Get:79 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libaudit1 amd64 1:4.1.2-1+b1 [60.2 kB] Get:80 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 bash amd64 5.3-3+b1 [1582 kB] Get:81 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 binutils amd64 2.47-2 [282 kB] Get:82 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 binutils-common amd64 2.47-2 [2685 kB] Get:83 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.47-2 [1072 kB] Get:84 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libbinutils amd64 2.47-2 [536 kB] Get:85 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libctf-nobfd0 amd64 2.47-2 [160 kB] Get:86 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libctf0 amd64 2.47-2 [91.7 kB] Get:87 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libgprofng0 amd64 2.47-2 [820 kB] Get:88 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:89 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 dpkg amd64 1.23.7 [1531 kB] Get:90 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 dpkg-dev all 1.23.7 [1318 kB] Get:91 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libdpkg-perl all 1.23.7 [669 kB] Get:92 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:93 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:94 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:95 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc-bin amd64 2.43-4 [620 kB] Get:96 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc-dev-bin amd64 2.43-4 [38.9 kB] Get:97 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc-gconv-modules-extra amd64 2.43-4 [1101 kB] Get:98 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc6 amd64 2.43-4 [1866 kB] Get:99 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libc6-dev amd64 2.43-4 [2067 kB] Get:100 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libcap-ng0 amd64 0.9.5-1 [18.5 kB] Fetched 303 MB in 2s (136 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/dwz_0.17-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/dh-python_7.20260623_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/binutils_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libctf0_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/g++-16-x86-64-linux-gnu_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libexpat1_2.8.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libdpkg-perl_1.23.7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libgcc-16-dev_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/grep_3.12-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/base-files_14.2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/groff-base_1.24.1-1_amd64.deb' dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/libmagic-mgc_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libasan8_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/gettext-base_1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/bash_5.3-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libc-bin_2.43-4_amd64.deb' dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/libaudit-common_4.1.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/build-essential_12.12_amd64.deb' dpkg-name: info: moved 'file_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/file_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libcc1-0_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/autopoint_1.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libisl23_0.28-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/autotools-dev_20240727.1+nmu1_all.deb' dpkg-name: info: moved 'cpp_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/cpp_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libblas3_3.12.1-8_amd64.deb' dpkg-name: info: moved 'g++_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/g++_16.1.0-3_amd64.deb' dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/libgmp10_6.3.0+dfsg-5+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libc6-dev_2.43-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/bsdextrautils_2.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/dash_0.5.12-12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libbz2-1.0_1.0.8-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libacl1_2.4.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libgdbm-compat4t64_1.26-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libbinutils_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/coreutils_9.10-1_amd64.deb' dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/cpp-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: info: moved 'libattr1_1%3a2.6.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/libattr1_2.6.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libdb5.3t64_5.3.28+dfsg2-11+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/dpkg_1.23.7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libatomic1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libc-gconv-modules-extra_2.43-4_amd64.deb' dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/g++-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libboost1.90-dev_1.90.0-6.1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/init-system-helpers_1.69+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libjs-sphinxdoc_9.1.0-7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/dh-autoreconf_22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/findutils_4.11.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libgfortran5_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/bzip2_1.0.8-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/binutils-x86-64-linux-gnu_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/binutils-common_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/liblzma5_5.8.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libgdbm6t64_1.26-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/gcc-16-base_16.2.0-2_amd64.deb' dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/gcc-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libexpat1-dev_2.8.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/debhelper_14.3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libitm1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libc-dev-bin_2.43-4_amd64.deb' dpkg-name: info: moved 'gcc_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/gcc_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/gzip_1.14-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/debconf_1.5.92_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: info: moved 'diffutils_1%3a3.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/diffutils_3.12-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/cpp-16_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libc6_2.43-4_amd64.deb' dpkg-name: info: moved 'libmagic1t64_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/libmagic1t64_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libgcc-s1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libdebhelper-perl_14.3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libhwasan0_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/debianutils_5.24_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/gcc-16_16.2.0-2_amd64.deb' dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/libaudit1_4.1.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/liblapack3_3.12.1-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/dh-exec_0.31_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libctf-nobfd0_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/liblsan0_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libblkid1_2.42.3-1_amd64.deb' dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/automake_1.18.1-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/hostname_3.25_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/dpkg-dev_1.23.7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/cpp-16-x86-64-linux-gnu_16.2.0-2_amd64.deb' dpkg-name: info: moved 'libcrypt1_1%3a4.5.2+20251210-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp40r8xdvd/libcrypt1_4.5.2+20251210-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libboost-dev_1.90.0.2+nmu1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/gcc-16-x86-64-linux-gnu_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libgprofng0_2.47-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/architecture-properties_0.2.6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libjansson4_2.15.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/dh-strip-nondeterminism_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libdebconfclient0_0.283_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libcap-ng0_0.9.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libelf1t64_0.196-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/g++-16_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libffi8_3.8.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/base-passwd_3.6.8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libfile-stripnondeterminism-perl_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/libgomp1_16.2.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/gettext_1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40r8xdvd/autoconf_2.73-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 16.2.0-2 [147 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libstdc++-16-dev amd64 16.2.0-2 [2754 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 16.2.0-2 [823 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libtsan2 amd64 16.2.0-2 [2574 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libubsan1 amd64 16.2.0-2 [1136 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Get:7 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.2.0-2 [43.2 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libselinux1 amd64 3.11-2 [87.3 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libtool all 2.6.2-2 [553 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-4 [304 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 linux-libc-dev all 7.1.12-1 [2062 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 make amd64 4.4.1-3 [463 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 mawk amd64 1.3.4.20260302-1 [142 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 11.1.0-2 [74.5 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.6+20260608-2 [353 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.6+20260608-2 [276 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.6+20260608-2 [445 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.6.4-1 [2614 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.6.4-1 [326 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-8 [168 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-8 [46.3 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-8 [246 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-8 [66.9 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 patch amd64 2.8-2 [134 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.48-2 [312 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 perl amd64 5.42.3-1 [266 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 perl-base amd64 5.42.3-1 [1878 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-2 [32.8 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-3 [37.1 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.14.7-3 [1012 B] Get:48 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.14.7-3 [8492 B] Get:49 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:50 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.14.7-3 [984 B] Get:52 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.14.7-3 [1008 B] Get:53 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.14.7-3 [26.7 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-3 [331 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 80.9.0-2 [224 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.5.0-3 [1597 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 sysvinit-utils amd64 3.18-1 [29.7 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-5 [825 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026c-1 [260 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.42.3-1 [230 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 2.42.3-1 [152 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 2.42.3-1 [34.4 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 2.42.3-1 [1246 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.3-1 [740 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:74 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libsframe3 amd64 2.47-2 [84.8 kB] Get:75 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libseccomp2 amd64 2.6.1-1 [49.9 kB] Get:76 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1+b1 [682 kB] Get:77 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-numpy amd64 1:2.4.6+ds-4 [7509 kB] Get:78 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-4 [137 kB] Get:79 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libpython3.14 amd64 3.14.7-1 [2522 kB] Get:80 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libpython3.14-dev amd64 3.14.7-1 [5818 kB] Get:81 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libpython3.14-minimal amd64 3.14.7-1 [899 kB] Get:82 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libpython3.14-stdlib amd64 3.14.7-1 [2356 kB] Get:83 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3.14 amd64 3.14.7-1 [861 kB] Get:84 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3.14-dev amd64 3.14.7-1 [508 kB] Get:85 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3.14-minimal amd64 3.14.7-1 [2714 kB] Get:86 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 python3-setuptools all 80.9.0-2 [698 kB] Get:87 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libsystemd0 amd64 262~rc1-2 [511 kB] Get:88 http://snapshot.debian.org/archive/debian/20260904T025144Z unstable/main amd64 libudev1 amd64 262~rc1-2 [148 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'/srv/rebuilderd/tmp/tmpnrte2kta/libpcre2-8-0_10.48-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrte2kta/mawk_1.3.4.20260302-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrte2kta/libpam-modules_1.7.0-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrte2kta/python3-jaraco.text_4.0.0-1_all.deb' dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpnrte2kta/zlib1g_1.3.dfsg+really1.3.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrte2kta/libpam-modules-bin_1.7.0-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrte2kta/patch_2.8-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrte2kta/python3-jaraco.context_6.0.1-2_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp1f9eincf/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.QIKXCpFMID as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.QIKXCpFMID 127.0.0.1 - - [11/Sep/2026 12:05:33] code 404, message File not found 127.0.0.1 - - [11/Sep/2026 12:05:33] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39873 ./ InRelease 127.0.0.1 - - [11/Sep/2026 12:05:33] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:39873 ./ Release [462 B] 127.0.0.1 - - [11/Sep/2026 12:05:33] code 404, message File not found 127.0.0.1 - - [11/Sep/2026 12:05:33] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39873 ./ Release.gpg 127.0.0.1 - - [11/Sep/2026 12:05:33] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:39873 ./ Packages [227 kB] Fetched 227 kB in 0s (15.6 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.QIKXCpFMID 127.0.0.1 - - [11/Sep/2026 12:05:35] code 404, message File not found 127.0.0.1 - - [11/Sep/2026 12:05:35] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39873 ./ InRelease 127.0.0.1 - - [11/Sep/2026 12:05:35] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:39873 ./ Release 127.0.0.1 - - [11/Sep/2026 12:05:35] code 404, message File not found 127.0.0.1 - - [11/Sep/2026 12:05:35] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39873 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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Building dependency tree... Reading state information... cpp-x86-64-linux-gnu is already the newest version (4:16.1.0-3). cpp-x86-64-linux-gnu set to manually installed. dwz is already the newest version (0.17-1). dwz set to manually installed. dh-python is already the newest version (7.20260623). dh-python set to manually installed. binutils is already the newest version (2.47-2). binutils set to manually installed. libctf0 is already the newest version (2.47-2). libctf0 set to manually installed. g++-16-x86-64-linux-gnu is already the newest version (16.2.0-2). g++-16-x86-64-linux-gnu set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). libcrypt1 is already the newest version (1:4.5.2+20251210-1). libexpat1 is already the newest version (2.8.4-1). libexpat1 set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libgcc-16-dev is already the newest version (16.2.0-2). libgcc-16-dev set to manually installed. grep is already the newest version (3.12-1). base-files is already the newest version (14.2). groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. libasan8 is already the newest version (16.2.0-2). libasan8 set to manually installed. gettext-base is already the newest version (1.0-3). gettext-base set to manually installed. bash is already the newest version (5.3-3+b1). libc-bin is already the newest version (2.43-4). build-essential is already the newest version (12.12). build-essential set to manually installed. libcc1-0 is already the newest version (16.2.0-2). libcc1-0 set to manually installed. autopoint is already the newest version (1.0-3). autopoint set to manually installed. libisl23 is already the newest version (0.28-1). libisl23 set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:16.1.0-3). gcc-x86-64-linux-gnu set to manually installed. libblas3 is already the newest version (3.12.1-8). libblas3 set to manually installed. libc6-dev is already the newest version (2.43-4). libc6-dev set to manually installed. bsdextrautils is already the newest version (2.42.3-1). bsdextrautils set to manually installed. dash is already the newest version (0.5.12-12). libbz2-1.0 is already the newest version (1.0.8-6+b2). libacl1 is already the newest version (2.4.0-1). libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. libbinutils is already the newest version (2.47-2). libbinutils set to manually installed. coreutils is already the newest version (9.10-1). libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). dpkg is already the newest version (1.23.7). g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. libatomic1 is already the newest version (16.2.0-2). libatomic1 set to manually installed. libc-gconv-modules-extra is already the newest version (2.43-4). libboost1.90-dev is already the newest version (1.90.0-6.1+b1). libboost1.90-dev set to manually installed. init-system-helpers is already the newest version (1.69+nmu1). automake is already the newest version (1:1.18.1-4). automake set to manually installed. libjs-sphinxdoc is already the newest version (9.1.0-7). libjs-sphinxdoc set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. findutils is already the newest version (4.11.0-2). libgfortran5 is already the newest version (16.2.0-2). libgfortran5 set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.47-2). binutils-x86-64-linux-gnu set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). binutils-common is already the newest version (2.47-2). binutils-common set to manually installed. diffutils is already the newest version (1:3.12-1). liblzma5 is already the newest version (5.8.3-1). file is already the newest version (1:5.47-4). file set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. gcc-16-base is already the newest version (16.2.0-2). libexpat1-dev is already the newest version (2.8.4-1). libexpat1-dev set to manually installed. libmagic-mgc is already the newest version (1:5.47-4). libmagic-mgc set to manually installed. debhelper is already the newest version (14.3). debhelper set to manually installed. libitm1 is already the newest version (16.2.0-2). libitm1 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). libc-dev-bin is already the newest version (2.43-4). libc-dev-bin set to manually installed. gzip is already the newest version (1.14-1). debconf is already the newest version (1.5.92). libmagic1t64 is already the newest version (1:5.47-4). libmagic1t64 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. cpp-16 is already the newest version (16.2.0-2). cpp-16 set to manually installed. libc6 is already the newest version (2.43-4). libgcc-s1 is already the newest version (16.2.0-2). libdebhelper-perl is already the newest version (14.3). libdebhelper-perl set to manually installed. libhwasan0 is already the newest version (16.2.0-2). libhwasan0 set to manually installed. debianutils is already the newest version (5.24). gcc-16 is already the newest version (16.2.0-2). gcc-16 set to manually installed. liblapack3 is already the newest version (3.12.1-8). liblapack3 set to manually installed. dh-exec is already the newest version (0.31). dh-exec set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:16.1.0-3). g++-x86-64-linux-gnu set to manually installed. libctf-nobfd0 is already the newest version (2.47-2). libctf-nobfd0 set to manually installed. liblsan0 is already the newest version (16.2.0-2). liblsan0 set to manually installed. libblkid1 is already the newest version (2.42.3-1). hostname is already the newest version (3.25). dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. cpp-16-x86-64-linux-gnu is already the newest version (16.2.0-2). cpp-16-x86-64-linux-gnu set to manually installed. libboost-dev is already the newest version (1.90.0.2+nmu1). libboost-dev set to manually installed. gcc-16-x86-64-linux-gnu is already the newest version (16.2.0-2). gcc-16-x86-64-linux-gnu set to manually installed. libgprofng0 is already the newest version (2.47-2). libgprofng0 set to manually installed. architecture-properties is already the newest version (0.2.6+b2). architecture-properties set to manually installed. libjansson4 is already the newest version (2.15.1-1). libjansson4 set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. libdebconfclient0 is already the newest version (0.283). libcap-ng0 is already the newest version (0.9.5-1). libelf1t64 is already the newest version (0.196-1). libelf1t64 set to manually installed. libattr1 is already the newest version (1:2.6.0-1). g++-16 is already the newest version (16.2.0-2). g++-16 set to manually installed. libffi8 is already the newest version (3.8.0-2). libffi8 set to manually installed. base-passwd is already the newest version (3.6.8). libfile-stripnondeterminism-perl is already the newest version (1.15.1-1). libfile-stripnondeterminism-perl set to manually installed. libgomp1 is already the newest version (16.2.0-2). libgomp1 set to manually installed. gettext is already the newest version (1.0-3). gettext set to manually installed. autoconf is already the newest version (2.73-2). autoconf set to manually installed. perl is already the newest version (5.42.3-1). perl set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. libtsan2 is already the newest version (16.2.0-2). libtsan2 set to manually installed. python3-all is already the newest version (3.14.7-3). python3-all set to manually installed. util-linux is already the newest version (2.42.3-1). python3.14-minimal is already the newest version (3.14.7-1). python3.14-minimal set to manually installed. python3-more-itertools is already the newest version (11.1.0-2). python3-more-itertools set to manually installed. python3 is already the newest version (3.14.7-3). python3 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. python3-dev is already the newest version (3.14.7-3). python3-dev set to manually installed. libubsan1 is already the newest version (16.2.0-2). libubsan1 set to manually installed. sysvinit-utils is already the newest version (3.18-1). python3-setuptools is already the newest version (80.9.0-2). python3-setuptools set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. libquadmath0 is already the newest version (16.2.0-2). libquadmath0 set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. libpython3-all-dev is already the newest version (3.14.7-3). libpython3-all-dev set to manually installed. python3-minimal is already the newest version (3.14.7-3). python3-minimal set to manually installed. ncurses-base is already the newest version (6.6+20260608-2). libmount1 is already the newest version (2.42.3-1). python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. libssl3t64 is already the newest version (3.6.4-1). libpam-runtime is already the newest version (1.7.0-8). python3-numpy is already the newest version (1:2.4.6+ds-4). python3-numpy set to manually installed. python3-all-dev is already the newest version (3.14.7-3). python3-all-dev set to manually installed. libsystemd0 is already the newest version (262~rc1-2). libuuid1 is already the newest version (2.42.3-1). po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libsqlite3-0 is already the newest version (3.53.4-2). libsqlite3-0 set to manually installed. openssl-provider-legacy is already the newest version (3.6.4-1). m4 is already the newest version (1.4.21-1). m4 set to manually installed. swig is already the newest version (4.5.0-3). swig set to manually installed. python3-typeguard is already the newest version (4.4.4-3). python3-typeguard set to manually installed. python3.14-dev is already the newest version (3.14.7-1). python3.14-dev set to manually installed. sed is already the newest version (4.9-3). python3.14 is already the newest version (3.14.7-1). python3.14 set to manually installed. libsmartcols1 is already the newest version (2.42.3-1). libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libsimde-dev is already the newest version (0.8.4~rc3-5). libsimde-dev set to manually installed. perl-base is already the newest version (5.42.3-1). python3-numpy-dev is already the newest version (1:2.4.6+ds-4). python3-numpy-dev set to manually installed. libtool is already the newest version (2.6.2-2). libtool set to manually installed. libpython3.14-stdlib is already the newest version (3.14.7-1). libpython3.14-stdlib set to manually installed. xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. libtinfo6 is already the newest version (6.6+20260608-2). libperl5.42 is already the newest version (5.42.3-1). libperl5.42 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. libpython3-stdlib is already the newest version (3.14.7-3). libpython3-stdlib set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. libxml2-16 is already the newest version (2.15.3+dfsg-1+b1). libxml2-16 set to manually installed. tar is already the newest version (1.35+dfsg-5). ncurses-bin is already the newest version (6.6+20260608-2). libpam0g is already the newest version (1.7.0-8). libstdc++-16-dev is already the newest version (16.2.0-2). libstdc++-16-dev set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libmd0 is already the newest version (1.2.0-2). zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). libpython3.14-dev is already the newest version (3.14.7-1). libpython3.14-dev set to manually installed. python3-pkg-resources is already the newest version (80.9.0-2). python3-pkg-resources set to manually installed. tzdata is already the newest version (2026c-1). tzdata set to manually installed. python3-inflect is already the newest version (7.5.0-2). python3-inflect set to manually installed. libpython3-dev is already the newest version (3.14.7-3). libpython3-dev set to manually installed. libncursesw6 is already the newest version (6.6+20260608-2). libncursesw6 set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libsframe3 is already the newest version (2.47-2). libsframe3 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libpython3.14 is already the newest version (3.14.7-1). libpython3.14 set to manually installed. python3-typing-extensions is already the newest version (4.16.0-5). python3-typing-extensions set to manually installed. libpython3.14-minimal is already the newest version (3.14.7-1). libpython3.14-minimal set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libseccomp2 is already the newest version (2.6.1-1). libseccomp2 set to manually installed. libudev1 is already the newest version (262~rc1-2). linux-libc-dev is already the newest version (7.1.12-1). linux-libc-dev set to manually installed. libselinux1 is already the newest version (3.11-2). netbase is already the newest version (6.6). netbase set to manually installed. perl-modules-5.42 is already the newest version (5.42.3-1). perl-modules-5.42 set to manually installed. libstdc++6 is already the newest version (16.2.0-2). libstdc++6 set to manually installed. libpcre2-8-0 is already the newest version (10.48-2). mawk is already the newest version (1.3.4.20260302-1). libpam-modules is already the newest version (1.7.0-8). python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libpam-modules-bin is already the newest version (1.7.0-8). patch is already the newest version (2.8-2). patch set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.QIKXCpFMID (Reading database ... 35998 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.QIKXCpFMID I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.QIKXCpFMID I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.QIKXCpFMID... I: success in 190.3739 seconds Downloading packages 1to 100 out of 188 Downloading packages 101to 188 out of 188 env --chdir=/srv/rebuilderd/tmp/rebuilderdCaDjuJ/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1767942232 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildETZRho/debrebuild.sbuildrc.DgGduuLBaWw_ sbuild --build=amd64 --host=amd64 --arch-any --no-arch-all --binNMU-changelog= consensuscore (1.1.1+dfsg-9+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild without Python 3.13 -- amd64 / i386 Build Daemon (x86-csail-01) Fri, 09 Jan 2026 07:03:52 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildETZRho/debrebuild.tar.xJIR_FvypcaQ --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=consensuscore-1.1.1+dfsg /srv/rebuilderd/tmp/rebuilderdCaDjuJ/inputs/consensuscore_1.1.1+dfsg-9.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl41-amd64.novalocal +==============================================================================+ | consensuscore 1.1.1+dfsg-9+b2 (amd64) Fri, 11 Sep 2026 12:08:44 +0000 | +==============================================================================+ Package: consensuscore Version: 1.1.1+dfsg-9+b2 Source Version: 1.1.1+dfsg-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildETZRho/debrebuild.tar.xJIR_FvypcaQ to /srv/rebuilderd/tmp/tmp.sbuild.Zwn0v1RzSO... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 11 Sep 2026 12:08:50 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdCaDjuJ/inputs/consensuscore_1.1.1+dfsg-9.dsc exists in /srv/rebuilderd/tmp/rebuilderdCaDjuJ/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 11 Sep 2026 12:08:52 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit, architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit, architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-oNrHzG/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 11 Sep 2026 12:08:55 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Fri, 11 Sep 2026 12:08:55 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47-2 dpkg-dev_1.23.7 g++-16_16.2.0-2 gcc-16_16.2.0-2 libc6-dev_2.43-4 libstdc++-16-dev_16.2.0-2 libstdc++6_16.2.0-2 linux-libc-dev_7.1.12-1 Package versions: architecture-properties_0.2.6+b2 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3+b1 binutils_2.47-2 binutils-common_2.47-2 binutils-x86-64-linux-gnu_2.47-2 bsdextrautils_2.42.3-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-2 cpp-16-x86-64-linux-gnu_16.2.0-2 cpp-x86-64-linux-gnu_4:16.1.0-3 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debianutils_5.24 dh-autoreconf_22 dh-exec_0.31 dh-python_7.20260623 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-2 g++-16-x86-64-linux-gnu_16.2.0-2 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-2 gcc-16-base_16.2.0-2 gcc-16-x86-64-linux-gnu_16.2.0-2 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-3 gettext-base_1.0-3 grep_3.12-1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu1 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libarchive-zip-perl_1.68-1 libasan8_16.2.0-2 libatomic1_16.2.0-2 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.47-2 libblas3_3.12.1-8 libblkid1_2.42.3-1 libboost-dev_1.90.0.2+nmu1 libboost1.90-dev_1.90.0-6.1+b1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-4 libc-dev-bin_2.43-4 libc-gconv-modules-extra_2.43-4 libc6_2.43-4 libc6-dev_2.43-4 libcap-ng0_0.9.5-1 libcc1-0_16.2.0-2 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-2 libctf0_2.47-2 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.7 libelf1t64_0.196-1 libexpat1_2.8.4-1 libexpat1-dev_2.8.4-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-2 libgcc-s1_16.2.0-2 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran5_16.2.0-2 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-2 libgprofng0_2.47-2 libhwasan0_16.2.0-2 libisl23_0.28-1 libitm1_16.2.0-2 libjansson4_2.15.1-1 libjs-sphinxdoc_9.1.0-7 liblapack3_3.12.1-8 liblsan0_16.2.0-2 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 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zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 11 Sep 2026 12:08:55 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: consensuscore Binary: libconsensuscore-dev, python3-pbconsensuscore Architecture: any Version: 1.1.1+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Homepage: https://github.com/PacificBiosciences/ConsensusCore Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/consensuscore Vcs-Git: https://salsa.debian.org/med-team/consensuscore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit [!i386], architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig Package-List: libconsensuscore-dev deb libdevel optional arch=any python3-pbconsensuscore deb python optional arch=any Checksums-Sha1: 06118ce273ef10180336ab071fd86dc60aea7168 363936 consensuscore_1.1.1+dfsg.orig.tar.xz ac12995d4ce310fb671f720f1229e09aef7f26c2 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz Checksums-Sha256: 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz Files: 17991299008d1c01e25ce3984b7fe7bd 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 949772e680d176bd186c5326388ebdcf 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmlgqxwRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBp7ZhAAvUnjkG3krPpq/gREqdP+b35fjw3OJN8w e0Y94gfMgaqrEBcSAtHOKjMkJQ5GchDLdu88C6OAO2OyIV58rDXaWHYq8YU5RmVK 57GZKb/B4viGxZXtcwyMPz4abCD92wk0FFvQR0h+uFpcAttSM3PF2zdzghFWyu0G 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dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting consensuscore in /build/reproducible-path/consensuscore-1.1.1+dfsg dpkg-source: info: unpacking consensuscore_1.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking consensuscore_1.1.1+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying check_boost_version.patch dpkg-source: info: applying sequence_setuptools.patch dpkg-source: info: applying portable_simd.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 1.1.1+dfsg-9+b2 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1767942232 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package consensuscore dpkg-buildpackage: info: source version 1.1.1+dfsg-9+b2 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-csail-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' ! test -f src/SWIG/numpy.i.orig || mv -v src/SWIG/numpy.i.orig src/SWIG/numpy.i make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:385: python3.14 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.14' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:385: python3.14 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config debian/rules execute_before_dh_auto_build make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' test -f src/SWIG/numpy.i.orig || mv -v src/SWIG/numpy.i src/SWIG/numpy.i.orig renamed 'src/SWIG/numpy.i' -> 'src/SWIG/numpy.i.orig' cp /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/numpy.i src/SWIG/numpy.i make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:385: /usr/bin/python3 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.5.0 PYTHON_INCLUDE = /usr/include/python3.14 NUMPY_INCLUDE = /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConfig.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/detail/RecursorBase.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MultiReadMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SimpleRecursor.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/Diploid.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationEnumerator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o -MM src/C++/Quiver/Diploid.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o -MM src/C++/Quiver/QuiverConfig.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.d src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:190:16: required from here 190 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:191:16: required from here 191 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:192:16: required from here 192 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:193:16: required from here 193 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:194:16: required from here 194 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:195:16: required from here 195 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::EdnaEvaluator]’: src/C++/Quiver/MutationScorer.cpp:196:16: required from here 196 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SseRecursor.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o -MM src/C++/Quiver/MutationEnumerator.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.d src/C++/Quiver/detail/RecursorBase.cpp: In instantiation of ‘const ConsensusCore::PairwiseAlignment* ConsensusCore::detail::RecursorBase::Alignment(const E&, const M&) const [with M = ConsensusCore::DenseMatrix; E = ConsensusCore::QvEvaluator; C = ConsensusCore::detail::ViterbiCombiner]’: src/C++/Quiver/detail/RecursorBase.cpp:221:16: required from here 221 | template class RecursorBase; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp:94:11: warning: variable ‘pathScore’ set but not used [-Wunused-but-set-variable=] 94 | float pathScore = 0; | ^~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp: In instantiation of ‘const ConsensusCore::PairwiseAlignment* ConsensusCore::detail::RecursorBase::Alignment(const E&, const M&) const [with M = ConsensusCore::SparseMatrix; E = ConsensusCore::QvEvaluator; C = ConsensusCore::detail::ViterbiCombiner]’: src/C++/Quiver/detail/RecursorBase.cpp:222:16: required from here 222 | template class RecursorBase; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp:94:11: warning: variable ‘pathScore’ set but not used [-Wunused-but-set-variable=] 94 | float pathScore = 0; | ^~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp: In instantiation of ‘const ConsensusCore::PairwiseAlignment* ConsensusCore::detail::RecursorBase::Alignment(const E&, const M&) const [with M = ConsensusCore::SparseMatrix; E = ConsensusCore::QvEvaluator; C = ConsensusCore::detail::SumProductCombiner]’: src/C++/Quiver/detail/RecursorBase.cpp:223:16: required from here 223 | template class RecursorBase; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp:94:11: warning: variable ‘pathScore’ set but not used [-Wunused-but-set-variable=] 94 | float pathScore = 0; | ^~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp: In instantiation of ‘const ConsensusCore::PairwiseAlignment* ConsensusCore::detail::RecursorBase::Alignment(const E&, const M&) const [with M = ConsensusCore::SparseMatrix; E = ConsensusCore::EdnaEvaluator; C = ConsensusCore::detail::SumProductCombiner]’: src/C++/Quiver/detail/RecursorBase.cpp:224:16: required from here 224 | template class RecursorBase; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp:94:11: warning: variable ‘pathScore’ set but not used [-Wunused-but-set-variable=] 94 | float pathScore = 0; | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/ReadScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Utils.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o -MM src/C++/Utils.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Features.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o -MM src/C++/Quiver/ReadScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o -MM src/C++/Quiver/detail/RecursorBase.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o -MM src/C++/Features.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Version.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Read.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/DenseMatrix.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o -MM src/C++/Quiver/MutationScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/SparseMatrix.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o -MM src/C++/Matrix/DenseMatrix.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/RangeFinder.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o -MM src/C++/Quiver/QuiverConsensus.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o -MM src/C++/Matrix/SparseMatrix.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphTraversals.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o -MM src/C++/Quiver/MultiReadMutationScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphImpl.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o -MM src/C++/Version.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraph.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o -MM src/C++/Read.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Sequence.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o -MM src/C++/Poa/PoaConsensus.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o -MM src/C++/Sequence.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o -MM src/C++/Quiver/SimpleRecursor.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Checksum.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Coverage.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Statistics/Binomial.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o -MM src/C++/Coverage.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AffineAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o -MM src/C++/Poa/PoaGraph.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/LinearAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o -MM src/C++/Align/AffineAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o -MM src/C++/Poa/RangeFinder.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/PairwiseAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o -MM src/C++/Align/LinearAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AlignConfig.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o -MM src/C++/Align/AlignConfig.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Mutation.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Edna/EdnaCounts.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o src/C++/Align/PairwiseAlignment.cpp: In function ‘std::vector ConsensusCore::TargetToQueryPositions(const std::string&)’: src/C++/Align/PairwiseAlignment.cpp:198:9: warning: variable ‘targetPos’ set but not used [-Wunused-but-set-variable=] 198 | int targetPos = 0; | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o -MM src/C++/Checksum.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o -MM src/C++/Statistics/Binomial.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Feature.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Logging/Logging.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o -MM src/C++/Align/PairwiseAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o -MM src/C++/Logging/Logging.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o -MM src/C++/Edna/EdnaCounts.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o -MM src/C++/Feature.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o -MM src/C++/Poa/PoaGraphTraversals.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o -MM src/C++/Mutation.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o -MM src/C++/Poa/PoaGraphImpl.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o -MM src/C++/Quiver/SseRecursor.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.d ar crs /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o touch /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.5.0 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.14 -I /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make test make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make -f make/Cpp.mk -j8 make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutations.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutations.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/ParameterSettings.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/ParameterSettings.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestPairwiseAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPairwiseAlignment.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestDiploidQuiver.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestDiploidQuiver.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestCoverage.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestCoverage.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationScorer.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestPoaConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPoaConsensus.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestSparseVector.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestSparseVector.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMultiReadMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMultiReadMutationScorer.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestRecursors.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestRecursors.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMatrixFacades.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMatrixFacades.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestQvEvaluator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestQvEvaluator.o In file included from /usr/include/boost/bind.hpp:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestQvEvaluator.cpp:5: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutationEnumerator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationEnumerator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutations.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/ParameterSettings.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPairwiseAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestDiploidQuiver.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestCoverage.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPoaConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestSparseVector.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMultiReadMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestRecursors.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMatrixFacades.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestQvEvaluator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationEnumerator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 /build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0/gmock-gtest-all.cc /build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0/gmock_main.cc -lpthread -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/test-runner GTEST_OUTPUT="xml:tests-summary.xml" /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/test-runner Running main() from gmock_main.cc [==========] Running 158 tests from 29 test cases. [----------] Global test environment set-up. [----------] 7 tests from MutationTest [ RUN ] MutationTest.BasicTest [ OK ] MutationTest.BasicTest (0 ms) [ RUN ] MutationTest.DeleteTest [ OK ] MutationTest.DeleteTest (0 ms) [ RUN ] MutationTest.InsertTest [ OK ] MutationTest.InsertTest (0 ms) [ RUN ] MutationTest.ApplyMutationsTest [ OK ] MutationTest.ApplyMutationsTest (0 ms) [ RUN ] MutationTest.ApplyMutationsToSamePositionTest [ OK ] MutationTest.ApplyMutationsToSamePositionTest (0 ms) [ RUN ] MutationTest.MutationsToTranscript [ OK ] MutationTest.MutationsToTranscript (0 ms) [ RUN ] MutationTest.MutatedTemplatePositionsTest [ OK ] MutationTest.MutatedTemplatePositionsTest (0 ms) [----------] 7 tests from MutationTest (0 ms total) [----------] 3 tests from PairwiseAlignmentTests [ RUN ] PairwiseAlignmentTests.RepresentationTests [ OK ] PairwiseAlignmentTests.RepresentationTests (0 ms) [ RUN ] PairwiseAlignmentTests.GlobalAlignmentTests [ OK ] PairwiseAlignmentTests.GlobalAlignmentTests (0 ms) [ RUN ] PairwiseAlignmentTests.TargetPositionsInQueryTest [ OK ] PairwiseAlignmentTests.TargetPositionsInQueryTest (0 ms) [----------] 3 tests from PairwiseAlignmentTests (0 ms total) [----------] 2 tests from AffineAlignmentTests [ RUN ] AffineAlignmentTests.BasicTests [ OK ] AffineAlignmentTests.BasicTests (0 ms) [ RUN ] AffineAlignmentTests.LargeGapTest [ OK ] AffineAlignmentTests.LargeGapTest (11 ms) [----------] 2 tests from AffineAlignmentTests (11 ms total) [----------] 1 test from IupacAlignmentTests [ RUN ] IupacAlignmentTests.BasicTest [ OK ] IupacAlignmentTests.BasicTest (0 ms) [----------] 1 test from IupacAlignmentTests (0 ms total) [----------] 1 test from LinearAlignmentTests [ RUN ] LinearAlignmentTests.BasicTest [ OK ] LinearAlignmentTests.BasicTest (0 ms) [----------] 1 test from LinearAlignmentTests (0 ms total) [----------] 3 tests from CoverageTests [ RUN ] CoverageTests.CoverageInWindowTest [ OK ] CoverageTests.CoverageInWindowTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest [ OK ] CoverageTests.CoveredIntervalsTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest2 [ OK ] CoverageTests.CoveredIntervalsTest2 (0 ms) [----------] 3 tests from CoverageTests (0 ms total) [----------] 8 tests from MutationScorerTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/0.BasicTest [ OK ] MutationScorerTest/0.BasicTest (0 ms) [ RUN ] MutationScorerTest/0.CopyTest [ OK ] MutationScorerTest/0.CopyTest (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtBeginning [ OK ] MutationScorerTest/0.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtEnd [ OK ] MutationScorerTest/0.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/0.TinyTemplate [ OK ] MutationScorerTest/0.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/0.TemplateMutationWorkflow [ OK ] MutationScorerTest/0.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/0.DinucleotideInsertionTest [ OK ] MutationScorerTest/0.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/0.DinucleotideDeletionTest [ OK ] MutationScorerTest/0.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/0 (2 ms total) [----------] 8 tests from MutationScorerTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/1.BasicTest [ OK ] MutationScorerTest/1.BasicTest (0 ms) [ RUN ] MutationScorerTest/1.CopyTest [ OK ] MutationScorerTest/1.CopyTest (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtBeginning [ OK ] MutationScorerTest/1.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtEnd [ OK ] MutationScorerTest/1.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/1.TinyTemplate [ OK ] MutationScorerTest/1.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/1.TemplateMutationWorkflow [ OK ] MutationScorerTest/1.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/1.DinucleotideInsertionTest [ OK ] MutationScorerTest/1.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/1.DinucleotideDeletionTest [ OK ] MutationScorerTest/1.DinucleotideDeletionTest (0 ms) [----------] 8 tests from MutationScorerTest/1 (2 ms total) [----------] 8 tests from MutationScorerTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/2.BasicTest [ OK ] MutationScorerTest/2.BasicTest (0 ms) [ RUN ] MutationScorerTest/2.CopyTest [ OK ] MutationScorerTest/2.CopyTest (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtBeginning [ OK ] MutationScorerTest/2.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtEnd [ OK ] MutationScorerTest/2.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/2.TinyTemplate [ OK ] MutationScorerTest/2.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/2.TemplateMutationWorkflow [ OK ] MutationScorerTest/2.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/2.DinucleotideInsertionTest [ OK ] MutationScorerTest/2.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/2.DinucleotideDeletionTest [ OK ] MutationScorerTest/2.DinucleotideDeletionTest (0 ms) [----------] 8 tests from MutationScorerTest/2 (1 ms total) [----------] 8 tests from MutationScorerTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/3.BasicTest [ OK ] MutationScorerTest/3.BasicTest (0 ms) [ RUN ] MutationScorerTest/3.CopyTest [ OK ] MutationScorerTest/3.CopyTest (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtBeginning [ OK ] MutationScorerTest/3.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtEnd [ OK ] MutationScorerTest/3.MutationsAtEnd (1 ms) [ RUN ] MutationScorerTest/3.TinyTemplate [ OK ] MutationScorerTest/3.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/3.TemplateMutationWorkflow [ OK ] MutationScorerTest/3.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/3.DinucleotideInsertionTest [ OK ] MutationScorerTest/3.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/3.DinucleotideDeletionTest [ OK ] MutationScorerTest/3.DinucleotideDeletionTest (0 ms) [----------] 8 tests from MutationScorerTest/3 (2 ms total) [----------] 4 tests from PoaGraph [ RUN ] PoaGraph.SmallBasicTest [ OK ] PoaGraph.SmallBasicTest (0 ms) [ RUN ] PoaGraph.SmallExtraTests [ OK ] PoaGraph.SmallExtraTests (1 ms) [ RUN ] PoaGraph.SmallMismatchTests [ OK ] PoaGraph.SmallMismatchTests (0 ms) [ RUN ] PoaGraph.SmallDeletionTests [ OK ] PoaGraph.SmallDeletionTests (0 ms) [----------] 4 tests from PoaGraph (1 ms total) [----------] 8 tests from PoaConsensus [ RUN ] PoaConsensus.TestSimple [ OK ] PoaConsensus.TestSimple (0 ms) [ RUN ] PoaConsensus.TestOverhangSecond [ OK ] PoaConsensus.TestOverhangSecond (1 ms) [ RUN ] PoaConsensus.SmallSemiglobalTest [ OK ] PoaConsensus.SmallSemiglobalTest (0 ms) [ RUN ] PoaConsensus.SmallTilingTest [ OK ] PoaConsensus.SmallTilingTest (0 ms) [ RUN ] PoaConsensus.TestVerboseGraphVizOutput [ OK ] PoaConsensus.TestVerboseGraphVizOutput (0 ms) [ RUN ] PoaConsensus.TestLocalStaggered dot -Tpng local-staggered.dot > local-staggered.png sh: 1: dot: not found [ OK ] PoaConsensus.TestLocalStaggered (4 ms) [ RUN ] PoaConsensus.TestLongInsert [ OK ] PoaConsensus.TestLongInsert (0 ms) [ RUN ] PoaConsensus.NondeterminismRegressionTest [ OK ] PoaConsensus.NondeterminismRegressionTest (409 ms) [----------] 8 tests from PoaConsensus (414 ms total) [----------] 2 tests from SparseVectorTest [ RUN ] SparseVectorTest.BasicTest [ OK ] SparseVectorTest.BasicTest (0 ms) [ RUN ] SparseVectorTest.BasicTest2 [ OK ] SparseVectorTest.BasicTest2 (0 ms) [----------] 2 tests from SparseVectorTest (0 ms total) [----------] 1 test from SparseVector [ RUN ] SparseVector.CopyTest [ OK ] SparseVector.CopyTest (0 ms) [----------] 1 test from SparseVector (0 ms total) [----------] 1 test from QuiverConfigTableTests [ RUN ] QuiverConfigTableTests.IllegalChemistry [ OK ] QuiverConfigTableTests.IllegalChemistry (0 ms) [----------] 1 test from QuiverConfigTableTests (0 ms total) [----------] 3 tests from MutationOrientationTests [ RUN ] MutationOrientationTests.ReadScoresMutation1 [ OK ] MutationOrientationTests.ReadScoresMutation1 (0 ms) [ RUN ] MutationOrientationTests.ReadScoresMutation2 [ OK ] MutationOrientationTests.ReadScoresMutation2 (0 ms) [ RUN ] MutationOrientationTests.OrientedMutation [ OK ] MutationOrientationTests.OrientedMutation (0 ms) [----------] 3 tests from MutationOrientationTests (0 ms total) [----------] 11 tests from MultiReadMutationScorerTest/0, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MultiReadMutationScorerTest/0.Template [ OK ] MultiReadMutationScorerTest/0.Template (0 ms) [ RUN ] MultiReadMutationScorerTest/0.BasicTest [ OK ] MultiReadMutationScorerTest/0.BasicTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.ManyMutationTest [ OK ] MultiReadMutationScorerTest/0.ManyMutationTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyConstructorTest [ OK ] MultiReadMutationScorerTest/0.CopyConstructorTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.ReverseStrandTest [ OK ] MultiReadMutationScorerTest/0.ReverseStrandTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning (1 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtEnd [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtEnd (0 ms) [ RUN ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 [ OK ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 (0 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyTest [ OK ] MultiReadMutationScorerTest/0.CopyTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds (0 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds (0 ms) [----------] 11 tests from MultiReadMutationScorerTest/0 (3 ms total) [----------] 7 tests from RecursorTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/0.SmallMatchTest [ OK ] RecursorTest/0.SmallMatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMismatchTest [ OK ] RecursorTest/0.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMergeTest [ OK ] RecursorTest/0.SmallMergeTest (0 ms) [ RUN ] RecursorTest/0.MediumSizedTest [ OK ] RecursorTest/0.MediumSizedTest (0 ms) [ RUN ] RecursorTest/0.LinkTest [ OK ] RecursorTest/0.LinkTest (0 ms) [ RUN ] RecursorTest/0.ExtendAlphaTest [ OK ] RecursorTest/0.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/0.ExtendBetaTest [ OK ] RecursorTest/0.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/0 (0 ms total) [----------] 7 tests from RecursorTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/1.SmallMatchTest [ OK ] RecursorTest/1.SmallMatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMismatchTest [ OK ] RecursorTest/1.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMergeTest [ OK ] RecursorTest/1.SmallMergeTest (0 ms) [ RUN ] RecursorTest/1.MediumSizedTest [ OK ] RecursorTest/1.MediumSizedTest (1 ms) [ RUN ] RecursorTest/1.LinkTest [ OK ] RecursorTest/1.LinkTest (0 ms) [ RUN ] RecursorTest/1.ExtendAlphaTest [ OK ] RecursorTest/1.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/1.ExtendBetaTest [ OK ] RecursorTest/1.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/1 (2 ms total) [----------] 7 tests from RecursorTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/2.SmallMatchTest [ OK ] RecursorTest/2.SmallMatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMismatchTest [ OK ] RecursorTest/2.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMergeTest [ OK ] RecursorTest/2.SmallMergeTest (0 ms) [ RUN ] RecursorTest/2.MediumSizedTest [ OK ] RecursorTest/2.MediumSizedTest (2 ms) [ RUN ] RecursorTest/2.LinkTest [ OK ] RecursorTest/2.LinkTest (0 ms) [ RUN ] RecursorTest/2.ExtendAlphaTest [ OK ] RecursorTest/2.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/2.ExtendBetaTest [ OK ] RecursorTest/2.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/2 (3 ms total) [----------] 7 tests from RecursorTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/3.SmallMatchTest [ OK ] RecursorTest/3.SmallMatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMismatchTest [ OK ] RecursorTest/3.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMergeTest [ OK ] RecursorTest/3.SmallMergeTest (0 ms) [ RUN ] RecursorTest/3.MediumSizedTest [ OK ] RecursorTest/3.MediumSizedTest (1 ms) [ RUN ] RecursorTest/3.LinkTest [ OK ] RecursorTest/3.LinkTest (1 ms) [ RUN ] RecursorTest/3.ExtendAlphaTest [ OK ] RecursorTest/3.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/3.ExtendBetaTest [ OK ] RecursorTest/3.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/3 (2 ms total) [----------] 5 tests from RecursorFuzzTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/0.AlphaBetaConcordance [ OK ] RecursorFuzzTest/0.AlphaBetaConcordance (10 ms) [ RUN ] RecursorFuzzTest/0.Alignment [ OK ] RecursorFuzzTest/0.Alignment (11 ms) [ RUN ] RecursorFuzzTest/0.LinkAlphaBeta [ OK ] RecursorFuzzTest/0.LinkAlphaBeta (11 ms) [ RUN ] RecursorFuzzTest/0.ExtendAlpha [ OK ] RecursorFuzzTest/0.ExtendAlpha (16 ms) [ RUN ] RecursorFuzzTest/0.ExtendBeta [ OK ] RecursorFuzzTest/0.ExtendBeta (15 ms) [----------] 5 tests from RecursorFuzzTest/0 (63 ms total) [----------] 5 tests from RecursorFuzzTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/1.AlphaBetaConcordance [ OK ] RecursorFuzzTest/1.AlphaBetaConcordance (32 ms) [ RUN ] RecursorFuzzTest/1.Alignment [ OK ] RecursorFuzzTest/1.Alignment (33 ms) [ RUN ] RecursorFuzzTest/1.LinkAlphaBeta [ OK ] RecursorFuzzTest/1.LinkAlphaBeta (32 ms) [ RUN ] RecursorFuzzTest/1.ExtendAlpha [ OK ] RecursorFuzzTest/1.ExtendAlpha (16 ms) [ RUN ] RecursorFuzzTest/1.ExtendBeta [ OK ] RecursorFuzzTest/1.ExtendBeta (15 ms) [----------] 5 tests from RecursorFuzzTest/1 (128 ms total) [----------] 5 tests from RecursorFuzzTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/2.AlphaBetaConcordance [ OK ] RecursorFuzzTest/2.AlphaBetaConcordance (43 ms) [ RUN ] RecursorFuzzTest/2.Alignment [ OK ] RecursorFuzzTest/2.Alignment (44 ms) [ RUN ] RecursorFuzzTest/2.LinkAlphaBeta [ OK ] RecursorFuzzTest/2.LinkAlphaBeta (52 ms) [ RUN ] RecursorFuzzTest/2.ExtendAlpha [ OK ] RecursorFuzzTest/2.ExtendAlpha (13 ms) [ RUN ] RecursorFuzzTest/2.ExtendBeta [ OK ] RecursorFuzzTest/2.ExtendBeta (12 ms) [----------] 5 tests from RecursorFuzzTest/2 (164 ms total) [----------] 5 tests from RecursorFuzzTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/3.AlphaBetaConcordance [ OK ] RecursorFuzzTest/3.AlphaBetaConcordance (40 ms) [ RUN ] RecursorFuzzTest/3.Alignment [ OK ] RecursorFuzzTest/3.Alignment (41 ms) [ RUN ] RecursorFuzzTest/3.LinkAlphaBeta [ OK ] RecursorFuzzTest/3.LinkAlphaBeta (41 ms) [ RUN ] RecursorFuzzTest/3.ExtendAlpha [ OK ] RecursorFuzzTest/3.ExtendAlpha (13 ms) [ RUN ] RecursorFuzzTest/3.ExtendBeta [ OK ] RecursorFuzzTest/3.ExtendBeta (13 ms) [----------] 5 tests from RecursorFuzzTest/3 (148 ms total) [----------] 11 tests from MatrixTest/0, where TypeParam = ConsensusCore::DenseMatrix [ RUN ] MatrixTest/0.Basic [ OK ] MatrixTest/0.Basic (0 ms) [ RUN ] MatrixTest/0.Nullability [ OK ] MatrixTest/0.Nullability (0 ms) [ RUN ] MatrixTest/0.Ranges [ OK ] MatrixTest/0.Ranges (0 ms) [ RUN ] MatrixTest/0.IsColumnEmpty [ OK ] MatrixTest/0.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/0.SSE [ OK ] MatrixTest/0.SSE (0 ms) [ RUN ] MatrixTest/0.ToHostArray [ OK ] MatrixTest/0.ToHostArray (0 ms) [ RUN ] MatrixTest/0.NonSequentialAccess [ OK ] MatrixTest/0.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/0.Holes [ OK ] MatrixTest/0.Holes (0 ms) [ RUN ] MatrixTest/0.BigBandedMatrix N13ConsensusCore11DenseMatrixE : 1000000 [ OK ] MatrixTest/0.BigBandedMatrix (2 ms) [ RUN ] MatrixTest/0.BigIrregularBandedMatrix [ OK ] MatrixTest/0.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/0.CopyTest [ OK ] MatrixTest/0.CopyTest (0 ms) [----------] 11 tests from MatrixTest/0 (2 ms total) [----------] 11 tests from MatrixTest/1, where TypeParam = ConsensusCore::SparseMatrix [ RUN ] MatrixTest/1.Basic [ OK ] MatrixTest/1.Basic (0 ms) [ RUN ] MatrixTest/1.Nullability [ OK ] MatrixTest/1.Nullability (0 ms) [ RUN ] MatrixTest/1.Ranges [ OK ] MatrixTest/1.Ranges (0 ms) [ RUN ] MatrixTest/1.IsColumnEmpty [ OK ] MatrixTest/1.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/1.SSE [ OK ] MatrixTest/1.SSE (0 ms) [ RUN ] MatrixTest/1.ToHostArray [ OK ] MatrixTest/1.ToHostArray (0 ms) [ RUN ] MatrixTest/1.NonSequentialAccess [ OK ] MatrixTest/1.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/1.Holes [ OK ] MatrixTest/1.Holes (0 ms) [ RUN ] MatrixTest/1.BigBandedMatrix N13ConsensusCore12SparseMatrixE : 1001976 [ OK ] MatrixTest/1.BigBandedMatrix (5 ms) [ RUN ] MatrixTest/1.BigIrregularBandedMatrix [ OK ] MatrixTest/1.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/1.CopyTest [ OK ] MatrixTest/1.CopyTest (0 ms) [----------] 11 tests from MatrixTest/1 (6 ms total) [----------] 5 tests from QvEvaluatorTest [ RUN ] QvEvaluatorTest.IncVsInc4 [ OK ] QvEvaluatorTest.IncVsInc4 (40 ms) [ RUN ] QvEvaluatorTest.DelVsDel4 [ OK ] QvEvaluatorTest.DelVsDel4 (40 ms) [ RUN ] QvEvaluatorTest.ExtraVsExtra4 [ OK ] QvEvaluatorTest.ExtraVsExtra4 (49 ms) [ RUN ] QvEvaluatorTest.MergeVsMerge4 [ OK ] QvEvaluatorTest.MergeVsMerge4 (34 ms) [ RUN ] QvEvaluatorTest.BadTagTest [ OK ] QvEvaluatorTest.BadTagTest (2 ms) [----------] 5 tests from QvEvaluatorTest (165 ms total) [----------] 4 tests from MutationEnumerationTest [ RUN ] MutationEnumerationTest.TestAllMutations [ OK ] MutationEnumerationTest.TestAllMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueMutations [ OK ] MutationEnumerationTest.TestUniqueMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueNearbyMutations [ OK ] MutationEnumerationTest.TestUniqueNearbyMutations (1 ms) [ RUN ] MutationEnumerationTest.TestDinucleotideMutations [ OK ] MutationEnumerationTest.TestDinucleotideMutations (0 ms) [----------] 4 tests from MutationEnumerationTest (1 ms total) [----------] Global test environment tear-down [==========] 158 tests from 29 test cases ran. (1121 ms total) [ PASSED ] 158 tests. make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make test-python make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.5.0 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.14 -I /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so 1.0.2 Python3 build is OK! make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:385: /usr/bin/python3 setup.py install --root /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.5.0 PYTHON_INCLUDE = /usr/include/python3.14 NUMPY_INCLUDE = /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.5.0 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.14 -I /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib running build_py copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build copying build/Python/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build creating /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages byte-compiling /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages/ConsensusCore.py to ConsensusCore.cpython-314.pyc running install_egg_info running egg_info creating build/Python/ConsensusCore.egg-info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' adding license file 'LICENSES' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--buildsystem=pybuild debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' find debian -name meson.build -delete make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild I: dh_python3 fs:507: renaming _ConsensusCore.so to _ConsensusCore.cpython-314-x86_64-linux-gnu.so debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_numpy3 Possible precedence problem between ! and pattern match (m//) at /usr/bin/dh_numpy3 line 68. dh_numpy3: skipping binary package libconsensuscore-dev which does not depend on the NumPy C ABI make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package libconsensuscore-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'libconsensuscore-dev' in '../libconsensuscore-dev_1.1.1+dfsg-9+b2_amd64.deb'. dpkg-deb: building package 'python3-pbconsensuscore' in '../python3-pbconsensuscore_1.1.1+dfsg-9+b2_amd64.deb'. dpkg-deb: building package 'python3-pbconsensuscore-dbgsym' in '../python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b2_amd64.deb'. dpkg-genbuildinfo --build=any -O../consensuscore_1.1.1+dfsg-9+b2_amd64.buildinfo dpkg-genchanges --build=any -O../consensuscore_1.1.1+dfsg-9+b2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-09-11T12:13:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 11 Sep 2026 12:13:27 +0000 | +------------------------------------------------------------------------------+ consensuscore_1.1.1+dfsg-9+b2_amd64.changes: -------------------------------------------- Format: 1.8 Date: Fri, 09 Jan 2026 07:03:52 +0000 Source: consensuscore (1.1.1+dfsg-9) Binary: libconsensuscore-dev python3-pbconsensuscore python3-pbconsensuscore-dbgsym Binary-Only: yes Architecture: amd64 Version: 1.1.1+dfsg-9+b2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: amd64 / i386 Build Daemon (x86-csail-01) Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python3-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 3 Changes: consensuscore (1.1.1+dfsg-9+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild without Python 3.13 Checksums-Sha1: b4c21e39f84976de312bb0d61077f01ae951ac7f 7017 consensuscore_1.1.1+dfsg-9+b2_amd64.buildinfo d59884a02371543bb39462e9e422d0d9d4e0543e 489852 libconsensuscore-dev_1.1.1+dfsg-9+b2_amd64.deb 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/build/reproducible-path/consensuscore-1.1.1+dfsg Installed-Build-Depends: architecture-properties (= 0.2.6+b2), autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3+b1), binutils (= 2.47-2), binutils-common (= 2.47-2), binutils-x86-64-linux-gnu (= 2.47-2), bsdextrautils (= 2.42.3-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-2), cpp-16-x86-64-linux-gnu (= 16.2.0-2), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.24), dh-autoreconf (= 22), dh-exec (= 0.31), dh-python (= 7.20260623), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-2), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-2), g++-16-x86-64-linux-gnu (= 16.2.0-2), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-2), gcc-16-base (= 16.2.0-2), gcc-16-x86-64-linux-gnu (= 16.2.0-2), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-2), libatomic1 (= 16.2.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.47-2), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.3-1), libboost-dev (= 1.90.0.2+nmu1), libboost1.90-dev (= 1.90.0-6.1+b1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-4), libc-dev-bin (= 2.43-4), libc-gconv-modules-extra (= 2.43-4), libc6 (= 2.43-4), libc6-dev (= 2.43-4), libcap-ng0 (= 0.9.5-1), libcc1-0 (= 16.2.0-2), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-2), libctf0 (= 2.47-2), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.196-1), libexpat1 (= 2.8.4-1), libexpat1-dev (= 2.8.4-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-2), libgcc-s1 (= 16.2.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran5 (= 16.2.0-2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-2), libgprofng0 (= 2.47-2), libhwasan0 (= 16.2.0-2), libisl23 (= 0.28-1), libitm1 (= 16.2.0-2), libjansson4 (= 2.15.1-1), libjs-sphinxdoc (= 9.1.0-7), liblapack3 (= 3.12.1-8), liblsan0 (= 16.2.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.3-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20260608-2), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-2), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpython3-all-dev (= 3.14.7-3), libpython3-dev (= 3.14.7-3), libpython3-stdlib (= 3.14.7-3), libpython3.14 (= 3.14.7-1), libpython3.14-dev (= 3.14.7-1), libpython3.14-minimal (= 3.14.7-1), libpython3.14-stdlib (= 3.14.7-1), libquadmath0 (= 16.2.0-2), libreadline8t64 (= 8.3-4), libseccomp2 (= 2.6.1-1), libselinux1 (= 3.11-2), libsframe3 (= 2.47-2), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.42.3-1), libsqlite3-0 (= 3.53.4-2), libssl3t64 (= 3.6.4-1), libstdc++-16-dev (= 16.2.0-2), libstdc++6 (= 16.2.0-2), libsystemd0 (= 262~rc1-2), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-2), libtsan2 (= 16.2.0-2), libubsan1 (= 16.2.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262~rc1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.3-1), libxml2-16 (= 2.15.3+dfsg-1+b1), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.1.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 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2026c-1), util-linux (= 2.42.3-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1767942232" +------------------------------------------------------------------------------+ | Package contents Fri, 11 Sep 2026 12:13:27 +0000 | +------------------------------------------------------------------------------+ libconsensuscore-dev_1.1.1+dfsg-9+b2_amd64.deb ---------------------------------------------- new Debian package, version 2.0. size 489852 bytes: control archive=2224 bytes. 769 bytes, 18 lines control 4416 bytes, 54 lines md5sums Package: libconsensuscore-dev Source: consensuscore (1.1.1+dfsg-9) Version: 1.1.1+dfsg-9+b2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3400 Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- development files ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the header files and static library. drwxr-xr-x root/root 0 2026-01-09 07:03 ./ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/include/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/include/ConsensusCore/ drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/ -rw-r--r-- root/root 1214 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/AffineAlignment.hpp -rw-r--r-- root/root 775 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/AlignConfig.hpp -rw-r--r-- root/root 565 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/LinearAlignment.hpp -rw-r--r-- root/root 1956 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/PairwiseAlignment.hpp -rw-r--r-- root/root 196 2018-08-14 14:23 ./usr/include/ConsensusCore/Checksum.hpp -rw-r--r-- root/root 653 2018-08-14 14:23 ./usr/include/ConsensusCore/Coverage.hpp drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/include/ConsensusCore/Edna/ -rw-r--r-- root/root 792 2018-08-14 14:23 ./usr/include/ConsensusCore/Edna/EdnaConfig.hpp -rw-r--r-- root/root 513 2018-08-14 14:23 ./usr/include/ConsensusCore/Edna/EdnaCounts.hpp -rw-r--r-- root/root 5876 2026-01-09 07:03 ./usr/include/ConsensusCore/Edna/EdnaEvaluator.hpp -rw-r--r-- root/root 2788 2018-08-14 14:23 ./usr/include/ConsensusCore/Feature.hpp -rw-r--r-- root/root 2051 2018-08-14 14:23 ./usr/include/ConsensusCore/Features.hpp -rw-r--r-- root/root 1517 2018-08-14 14:23 ./usr/include/ConsensusCore/Interval.hpp -rw-r--r-- root/root 838 2026-01-09 07:03 ./usr/include/ConsensusCore/LFloat.hpp -rw-r--r-- root/root 510 2018-08-14 14:23 ./usr/include/ConsensusCore/Logging.hpp drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/include/ConsensusCore/Matrix/ -rw-r--r-- root/root 734 2018-08-14 14:23 ./usr/include/ConsensusCore/Matrix/AbstractMatrix.hpp -rw-r--r-- root/root 3113 2018-08-14 14:23 ./usr/include/ConsensusCore/Matrix/DenseMatrix-inl.hpp -rw-r--r-- root/root 2549 2026-01-09 07:03 ./usr/include/ConsensusCore/Matrix/DenseMatrix.hpp -rw-r--r-- root/root 2697 2018-08-14 14:23 ./usr/include/ConsensusCore/Matrix/SparseMatrix-inl.hpp -rw-r--r-- root/root 1918 2026-01-09 07:03 ./usr/include/ConsensusCore/Matrix/SparseMatrix.hpp -rw-r--r-- root/root 5885 2018-08-14 14:23 ./usr/include/ConsensusCore/Matrix/SparseVector-inl.hpp -rw-r--r-- root/root 1619 2026-01-09 07:03 ./usr/include/ConsensusCore/Matrix/SparseVector.hpp -rw-r--r-- root/root 1812 2018-08-14 14:23 ./usr/include/ConsensusCore/Matrix/VectorL.hpp -rw-r--r-- root/root 2663 2018-08-14 14:23 ./usr/include/ConsensusCore/Mutation-inl.hpp -rw-r--r-- root/root 2399 2018-08-14 14:23 ./usr/include/ConsensusCore/Mutation.hpp drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ConsensusCore/Poa/ -rw-r--r-- root/root 1801 2018-08-14 14:23 ./usr/include/ConsensusCore/Poa/PoaConsensus.hpp -rw-r--r-- root/root 1915 2018-08-14 14:23 ./usr/include/ConsensusCore/Poa/PoaGraph.hpp -rw-r--r-- root/root 1555 2018-08-14 14:23 ./usr/include/ConsensusCore/Poa/RangeFinder.hpp drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/include/ConsensusCore/Quiver/ -rw-r--r-- root/root 531 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/Diploid.hpp -rw-r--r-- root/root 7338 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MultiReadMutationScorer.hpp -rw-r--r-- root/root 1178 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationEnumerator-inl.hpp -rw-r--r-- root/root 1776 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationEnumerator.hpp -rw-r--r-- root/root 1924 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationScorer.hpp -rw-r--r-- root/root 5260 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/QuiverConfig.hpp -rw-r--r-- root/root 933 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/QuiverConsensus.hpp -rw-r--r-- root/root 6723 2026-01-09 07:03 ./usr/include/ConsensusCore/Quiver/QvEvaluator.hpp -rw-r--r-- root/root 773 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/ReadScorer.hpp -rw-r--r-- root/root 1474 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/SimpleRecursor.hpp -rw-r--r-- root/root 1771 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/SseRecursor.hpp drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/include/ConsensusCore/Quiver/detail/ -rw-r--r-- root/root 856 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/detail/Combiner.hpp -rw-r--r-- root/root 1715 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/detail/RecursorBase-inl.hpp -rw-r--r-- root/root 2535 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/detail/RecursorBase.hpp -rw-r--r-- root/root 1306 2026-01-09 07:03 ./usr/include/ConsensusCore/Quiver/detail/SseMath.hpp -rw-r--r-- root/root 29211 2026-01-09 07:03 ./usr/include/ConsensusCore/Quiver/detail/sse_mathfun.h -rw-r--r-- root/root 891 2018-08-14 14:23 ./usr/include/ConsensusCore/Read.hpp -rw-r--r-- root/root 278 2018-08-14 14:23 ./usr/include/ConsensusCore/Sequence.hpp drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ConsensusCore/Statistics/ -rw-r--r-- root/root 378 2018-08-14 14:23 ./usr/include/ConsensusCore/Statistics/Binomial.hpp -rw-r--r-- root/root 2483 2018-08-14 14:23 ./usr/include/ConsensusCore/Types.hpp -rw-r--r-- root/root 1093 2018-08-14 14:23 ./usr/include/ConsensusCore/Utils.hpp -rw-r--r-- root/root 433 2018-08-14 14:23 ./usr/include/ConsensusCore/Version.hpp drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 3310528 2026-01-09 07:03 ./usr/lib/x86_64-linux-gnu/libConsensusCore.a drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/doc/libconsensuscore-dev/ -rw-r--r-- root/root 234 2026-01-09 07:03 ./usr/share/doc/libconsensuscore-dev/changelog.Debian.amd64.gz -rw-r--r-- root/root 821 2026-01-09 07:03 ./usr/share/doc/libconsensuscore-dev/changelog.Debian.gz -rw-r--r-- root/root 420 2018-08-14 14:23 ./usr/share/doc/libconsensuscore-dev/changelog.gz -rw-r--r-- root/root 5866 2026-01-09 07:01 ./usr/share/doc/libconsensuscore-dev/copyright python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b2_amd64.deb -------------------------------------------------------- new Debian package, version 2.0. size 9366576 bytes: control archive=564 bytes. 456 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: python3-pbconsensuscore-dbgsym Source: consensuscore (1.1.1+dfsg-9) Version: 1.1.1+dfsg-9+b2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 9574 Depends: python3-pbconsensuscore (= 1.1.1+dfsg-9+b2) Section: debug Priority: optional Description: debug symbols for python3-pbconsensuscore Build-Ids: 1c9bb4eccf47b5682a476e475f2123386a1f7149 drwxr-xr-x root/root 0 2026-01-09 07:03 ./ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/debug/.build-id/1c/ -rw-r--r-- root/root 9793240 2026-01-09 07:03 ./usr/lib/debug/.build-id/1c/9bb4eccf47b5682a476e475f2123386a1f7149.debug drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-01-09 07:03 ./usr/share/doc/python3-pbconsensuscore-dbgsym -> python3-pbconsensuscore python3-pbconsensuscore_1.1.1+dfsg-9+b2_amd64.deb ------------------------------------------------- new Debian package, version 2.0. size 770196 bytes: control archive=1408 bytes. 890 bytes, 18 lines control 872 bytes, 9 lines md5sums 301 bytes, 12 lines * postinst #!/bin/sh 439 bytes, 12 lines * prerm #!/bin/sh Package: python3-pbconsensuscore Source: consensuscore (1.1.1+dfsg-9) Version: 1.1.1+dfsg-9+b2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3153 Depends: python3 (<< 3.15), python3 (>= 3.14~), python3-numpy2-abi0 | python3-numpy-abi9, python3:any, libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 13.1) Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- Python 3 ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the Python3 bindings. drwxr-xr-x root/root 0 2026-01-09 07:03 ./ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/python3/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/ -rw-r--r-- root/root 2354 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/dependency_links.txt -rw-r--r-- root/root 15 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/top_level.txt -rw-r--r-- root/root 442 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore.py -rw-r--r-- root/root 3200632 2026-01-09 07:03 ./usr/lib/python3/dist-packages/_ConsensusCore.cpython-314-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/doc/python3-pbconsensuscore/ -rw-r--r-- root/root 234 2026-01-09 07:03 ./usr/share/doc/python3-pbconsensuscore/changelog.Debian.amd64.gz -rw-r--r-- root/root 821 2026-01-09 07:03 ./usr/share/doc/python3-pbconsensuscore/changelog.Debian.gz -rw-r--r-- root/root 420 2018-08-14 14:23 ./usr/share/doc/python3-pbconsensuscore/changelog.gz -rw-r--r-- root/root 5866 2026-01-09 07:01 ./usr/share/doc/python3-pbconsensuscore/copyright +------------------------------------------------------------------------------+ | Post Build Fri, 11 Sep 2026 12:13:29 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 11 Sep 2026 12:13:29 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 11 Sep 2026 12:13:30 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 232520 Build-Time: 270 Distribution: unstable Host Architecture: amd64 Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdCaDjuJ/inputs/consensuscore_1.1.1+dfsg-9.dsc Machine Architecture: amd64 Package: consensuscore Package-Time: 282 Source-Version: 1.1.1+dfsg-9 Space: 232520 Status: successful Version: 1.1.1+dfsg-9+b2 -------------------------------------------------------------------------------- Finished at 2026-09-11T12:13:26Z Build needed 00:04:42, 232520k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdCaDjuJ/out checking libconsensuscore-dev_1.1.1+dfsg-9+b2_amd64.deb: size differs for libconsensuscore-dev_1.1.1+dfsg-9+b2_amd64.deb